<86>Sep 10 11:20:21 userdel[111918]: delete user 'rooter'
<86>Sep 10 11:20:21 userdel[111918]: removed group 'rooter' owned by 'rooter'
<86>Sep 10 11:20:21 userdel[111918]: removed shadow group 'rooter' owned by 'rooter'
<86>Sep 10 11:20:21 groupadd[111939]: group added to /etc/group: name=rooter, GID=525
<86>Sep 10 11:20:21 groupadd[111939]: group added to /etc/gshadow: name=rooter
<86>Sep 10 11:20:21 groupadd[111939]: new group: name=rooter, GID=525
<86>Sep 10 11:20:21 useradd[111952]: new user: name=rooter, UID=525, GID=525, home=/root, shell=/bin/bash
<86>Sep 10 11:20:21 userdel[111981]: delete user 'builder'
<86>Sep 10 11:20:21 userdel[111981]: removed group 'builder' owned by 'builder'
<86>Sep 10 11:20:21 userdel[111981]: removed shadow group 'builder' owned by 'builder'
<86>Sep 10 11:20:21 groupadd[111994]: group added to /etc/group: name=builder, GID=526
<86>Sep 10 11:20:21 groupadd[111994]: group added to /etc/gshadow: name=builder
<86>Sep 10 11:20:21 groupadd[111994]: new group: name=builder, GID=526
<86>Sep 10 11:20:21 useradd[112004]: new user: name=builder, UID=526, GID=526, home=/usr/src, shell=/bin/bash
<13>Sep 10 11:20:25 rpmi: xorg-proto-devel-2019.1-alt1 sisyphus+232786.100.1.1 1561106722 installed
<13>Sep 10 11:20:25 rpmi: libfftw3-common-3.3.8-alt1 sisyphus+226899.100.1.1 1554782385 installed
<13>Sep 10 11:20:25 rpmi: libgomp1-8.3.1-alt5 sisyphus+235477.100.1.1 1565022025 installed
<13>Sep 10 11:20:25 rpmi: libnl3-3.4.0-alt2 1507570088 installed
<13>Sep 10 11:20:25 rpmi: libibverbs-24.0-alt3 sisyphus+233653.100.1.1 1562118436 installed
<13>Sep 10 11:20:25 rpmi: libXau-1.0.9-alt1 sisyphus+223149.200.2.1 1551268152 installed
<13>Sep 10 11:20:25 rpmi: libICE-1.0.9-alt1 1409902721 installed
<13>Sep 10 11:20:25 rpmi: libquadmath0-8.3.1-alt5 sisyphus+235477.100.1.1 1565022025 installed
<13>Sep 10 11:20:25 rpmi: udev-rules-1:243-alt1 sisyphus+237134.300.3.1 1567642568 installed
<13>Sep 10 11:20:25 rpmi: libquadmath8-devel-8.3.1-alt5 sisyphus+235477.100.1.1 1565022025 installed
<13>Sep 10 11:20:25 rpmi: libgfortran5-8.3.1-alt5 sisyphus+235477.100.1.1 1565022025 installed
<13>Sep 10 11:20:25 rpmi: libSM-1.2.3-alt1 sisyphus+226734.100.2.1 1554586158 installed
<13>Sep 10 11:20:25 rpmi: librdmacm-24.0-alt3 sisyphus+233653.100.1.1 1562118436 installed
<13>Sep 10 11:20:25 rpmi: libnuma-2.0.11-alt1 1450022594 installed
<13>Sep 10 11:20:25 rpmi: libopenblas-0.2.20-alt2 sisyphus+229410.100.1.1 1557920019 installed
<13>Sep 10 11:20:25 rpmi: libmnl-1.0.4-alt2 sisyphus+220683.100.1.1 1549335457 installed
<13>Sep 10 11:20:25 rpmi: libpng16-1.6.37-alt1 sisyphus+236677.100.2.1 1566917998 installed
<13>Sep 10 11:20:26 rpmi: libicu64-1:6.4.2-alt1 sisyphus+227580.100.1.2 1555784329 installed
<13>Sep 10 11:20:26 rpmi: libgraphite2-1.3.13-alt2 sisyphus+226799.100.1.1 1554648241 installed
<13>Sep 10 11:20:26 rpmi: libharfbuzz-2.6.1-alt1 sisyphus+236500.100.1.1 1566557851 installed
<13>Sep 10 11:20:26 rpmi: libfreetype-2.10.0-alt2 sisyphus+226881.100.2.1 1555676286 installed
<13>Sep 10 11:20:26 rpmi: libexpat-2.2.4-alt1 1503305345 installed
<13>Sep 10 11:20:26 rpmi: fontconfig-2.13.1-alt1 sisyphus+226691.100.2.2 1554598726 installed
Updating fonts cache: <29>Sep 10 11:20:27 fontconfig: Updating fonts cache: succeeded
[ DONE ]
<13>Sep 10 11:20:27 rpmi: liblz4-1:1.9.1-alt1 sisyphus+228057.100.1.1 1556059318 installed
<13>Sep 10 11:20:27 rpmi: libiptables-1.8.3-alt2 sisyphus+230708.100.1.1 1559139623 installed
<13>Sep 10 11:20:27 rpmi: libidn2-2.2.0-alt1 sisyphus+229970.100.1.1 1558625600 installed
<13>Sep 10 11:20:27 rpmi: libdevmapper-1.02.163-alt1 sisyphus+235860.260.6.1 1565551898 installed
<13>Sep 10 11:20:27 rpmi: msulogin-1.0-alt1 1366288515 installed
<13>Sep 10 11:20:27 rpmi: mount-2.33.2-alt1 sisyphus+227076.100.1.1 1555076789 installed
<13>Sep 10 11:20:28 rpmi: sysvinit-2.88-alt5 1424350686 installed
<13>Sep 10 11:20:28 rpmi: libharfbuzz-icu-2.6.1-alt1 sisyphus+236500.100.1.1 1566557851 installed
<13>Sep 10 11:20:28 rpmi: libgraphite2-devel-1.3.13-alt2 sisyphus+226799.100.1.1 1554648241 installed
<13>Sep 10 11:20:28 rpmi: icu-utils-1:6.4.2-alt1 sisyphus+227580.100.1.2 1555784329 installed
<13>Sep 10 11:20:28 rpmi: libicu-devel-1:6.4.2-alt1 sisyphus+227580.100.1.2 1555784329 installed
<13>Sep 10 11:20:28 rpmi: libnetlink-5.2.0-alt1 sisyphus+234078.100.2.1 1563472659 installed
<13>Sep 10 11:20:28 rpmi: libopenblas-devel-0.2.20-alt2 sisyphus+229410.100.1.1 1557920019 installed
<13>Sep 10 11:20:28 rpmi: libnuma-devel-2.0.11-alt1 1450022594 installed
<13>Sep 10 11:20:28 rpmi: libfftw3q-3.3.8-alt1 sisyphus+226899.100.1.1 1554783258 installed
<13>Sep 10 11:20:28 rpmi: libICE-devel-1.0.9-alt1 1409902721 installed
<13>Sep 10 11:20:28 rpmi: libSM-devel-1.2.3-alt1 sisyphus+226734.100.2.1 1554586158 installed
<13>Sep 10 11:20:28 rpmi: libXau-devel-1.0.9-alt1 sisyphus+223149.200.2.1 1551268152 installed
<13>Sep 10 11:20:28 rpmi: xorg-printproto-devel-1.0.5-alt1 1303466042 installed
<13>Sep 10 11:20:28 rpmi: libfftw3-3.3.8-alt1 sisyphus+226899.100.1.1 1554783258 installed
<13>Sep 10 11:20:28 rpmi: libfftw3f-3.3.8-alt1 sisyphus+226899.100.1.1 1554783258 installed
<13>Sep 10 11:20:28 rpmi: libfftw3l-3.3.8-alt1 sisyphus+226899.100.1.1 1554783258 installed
<13>Sep 10 11:20:28 rpmi: pciids-20190902-alt1 sisyphus+237049.100.1.1 1567490275 installed
<13>Sep 10 11:20:28 rpmi: tcsh-6.20.00-alt2 1503603381 installed
<13>Sep 10 11:20:28 rpmi: rpm-macros-mpi-selector-1.0.3-alt3 1504498675 installed
<13>Sep 10 11:20:28 rpmi: mpi-selector-1.0.3-alt3 1504498675 installed
<13>Sep 10 11:20:28 rpmi: openmpi-2.0.1-alt8 sisyphus+229856.100.1.1 1558540200 installed
<13>Sep 10 11:20:28 rpmi: libpci-3.6.2-alt2 sisyphus+225907.100.1.1 1553930304 installed
<13>Sep 10 11:20:28 rpmi: pciutils-3.6.2-alt2 sisyphus+225907.100.1.1 1553930304 installed
<13>Sep 10 11:20:28 rpmi: libxblas-1.0.248-alt1.3 sisyphus+229150.100.1.1 1557388786 installed
<13>Sep 10 11:20:29 rpmi: liblapack-1:3.8.0-alt3 sisyphus+221521.100.1.1 1550134903 installed
<13>Sep 10 11:20:29 rpmi: libjpeg-2:2.0.2-alt1 sisyphus+226996.100.1.1 1554902907 installed
<13>Sep 10 11:20:29 rpmi: libibumad-24.0-alt3 sisyphus+233653.100.1.1 1562118436 installed
<13>Sep 10 11:20:29 rpmi: libgsl-2.5-alt1 sisyphus.212796.100 1536590919 installed
<13>Sep 10 11:20:29 rpmi: libX11-locales-3:1.6.8-alt1 sisyphus+232786.200.1.1 1561106874 installed
<13>Sep 10 11:20:29 rpmi: libXdmcp-1.1.3-alt1 sisyphus+225206.600.1.2 1552949353 installed
<13>Sep 10 11:20:29 rpmi: libxcb-1.13.1-alt1 sisyphus+226527.100.2.2 1554593801 installed
<13>Sep 10 11:20:29 rpmi: libX11-3:1.6.8-alt1 sisyphus+232786.200.1.1 1561106876 installed
<13>Sep 10 11:20:29 rpmi: libXext-1.3.4-alt1 sisyphus+225206.700.1.2 1552949429 installed
<13>Sep 10 11:20:29 rpmi: libXt-1.1.4-alt1 1369984722 installed
<13>Sep 10 11:20:29 rpmi: libXrender-0.9.8-alt1 1371312112 installed
<13>Sep 10 11:20:29 rpmi: libXft-2.3.3-alt1 sisyphus+225206.1000.3.2 1552987708 installed
<13>Sep 10 11:20:29 rpmi: libXmu-1.1.3-alt1 sisyphus+225206.1200.1.2 1552949641 installed
<13>Sep 10 11:20:29 rpmi: libXp-1.0.2-alt1 1370421432 installed
<13>Sep 10 11:20:29 rpmi: libopenmotif4-2.3.8-alt1 sisyphus+222959.100.1.1 1551299718 installed
<13>Sep 10 11:20:30 rpmi: libxcb-devel-1.13.1-alt1 sisyphus+226527.100.2.2 1554593801 installed
<13>Sep 10 11:20:30 rpmi: libX11-devel-3:1.6.8-alt1 sisyphus+232786.200.1.1 1561106876 installed
<13>Sep 10 11:20:30 rpmi: libXrender-devel-0.9.8-alt1 1371312112 installed
<13>Sep 10 11:20:30 rpmi: libXt-devel-1.1.4-alt1 1369984722 installed
<13>Sep 10 11:20:30 rpmi: libatm-2.5.1-alt6 sisyphus+234093.100.1.1 1562575889 installed
<13>Sep 10 11:20:30 rpmi: chrooted-0.3.9-alt1 1524554183 installed
<13>Sep 10 11:20:30 rpmi: chrooted-resolv-0.3.1-alt2 1176155250 installed
<13>Sep 10 11:20:31 rpmi: gcc-fortran-common-1.4.23-alt1 sisyphus+221902.2500.4.1 1550596716 installed
<13>Sep 10 11:20:31 rpmi: libgfortran8-devel-8.3.1-alt5 sisyphus+235477.100.1.1 1565022025 installed
<13>Sep 10 11:20:32 rpmi: gcc8-fortran-8.3.1-alt5 sisyphus+235477.100.1.1 1565022025 installed
<13>Sep 10 11:20:32 rpmi: gcc-fortran-8-alt2 sisyphus+235723.100.1.1 1565191484 installed
<13>Sep 10 11:20:32 rpmi: gcc-c++-common-1.4.23-alt1 sisyphus+221902.2500.4.1 1550596716 installed
<13>Sep 10 11:20:32 rpmi: libstdc++8-devel-8.3.1-alt5 sisyphus+235477.100.1.1 1565022025 installed
<13>Sep 10 11:20:33 rpmi: gcc8-c++-8.3.1-alt5 sisyphus+235477.100.1.1 1565022025 installed
<13>Sep 10 11:20:33 rpmi: gcc-c++-8-alt2 sisyphus+235723.100.1.1 1565191484 installed
<13>Sep 10 11:20:33 rpmi: libgdbm-1.8.3-alt10 1454943334 installed
<13>Sep 10 11:20:33 rpmi: xml-utils-1:2.9.9.0.52.f824-alt1 sisyphus+229881.200.3.1 1558978749 installed
<13>Sep 10 11:20:33 rpmi: rpm-build-gir-0.7.3-alt2 sisyphus+234037.40.2.1 1562495133 installed
<13>Sep 10 11:20:33 rpmi: udev-hwdb-1:243-alt1 sisyphus+237134.300.3.1 1567642568 installed
<13>Sep 10 11:20:33 rpmi: libseccomp-2.4.1-alt1 sisyphus+228056.100.1.1 1556057321 installed
<13>Sep 10 11:20:33 rpmi: libpcre2-10.33-alt1.1 sisyphus+227856.100.1.2 1555786378 installed
<13>Sep 10 11:20:33 rpmi: libjson-c4-0.13.1-alt1 sisyphus+226468.100.8.1 1554723266 installed
<13>Sep 10 11:20:33 rpmi: libargon2-20190702-alt1 sisyphus+235300.100.1.1 1564606540 installed
<13>Sep 10 11:20:33 rpmi: libgpg-error-1.36-alt1 sisyphus+225621.300.1.1 1553521082 installed
<13>Sep 10 11:20:33 rpmi: libgcrypt20-1.8.5-alt1 sisyphus+236872.100.1.1 1567111980 installed
<13>Sep 10 11:20:33 rpmi: libsystemd-1:243-alt1 sisyphus+237134.300.3.1 1567642540 installed
<13>Sep 10 11:20:33 rpmi: hwclock-1:2.33.2-alt1 sisyphus+227076.100.1.1 1555076789 installed
<13>Sep 10 11:20:33 rpmi: hashalot-0.3-alt1.qa1 1366323553 installed
<13>Sep 10 11:20:33 rpmi: losetup-2.33.2-alt1 sisyphus+227076.100.1.1 1555076789 installed
<13>Sep 10 11:20:33 rpmi: lsblk-2.33.2-alt1 sisyphus+227076.100.1.1 1555076789 installed
<13>Sep 10 11:20:33 rpmi: libp11-kit-0.23.15-alt1 sisyphus+226408.100.2.1 1554288204 installed
<13>Sep 10 11:20:33 rpmi: libtasn1-4.14-alt1 sisyphus+235791.100.1.1 1565282372 installed
<13>Sep 10 11:20:33 rpmi: rpm-macros-alternatives-0.5.1-alt1 sisyphus+226946.100.1.1 1554830426 installed
<13>Sep 10 11:20:33 rpmi: alternatives-0.5.1-alt1 sisyphus+226946.100.1.1 1554830426 installed
<13>Sep 10 11:20:33 rpmi: ca-certificates-2019.07.11-alt1 sisyphus+234280.200.1.1 1562839906 installed
<13>Sep 10 11:20:33 rpmi: ca-trust-0.1.2-alt1 sisyphus+233348.100.1.1 1561653823 installed
<13>Sep 10 11:20:33 rpmi: p11-kit-trust-0.23.15-alt1 sisyphus+226408.100.2.1 1554288204 installed
<13>Sep 10 11:20:33 rpmi: libcrypto1.1-1.1.1b-alt2 sisyphus+227249.100.2.1 1555667822 installed
<13>Sep 10 11:20:33 rpmi: libkmod-26-alt1 sisyphus+226359.100.1.1 1554129990 installed
<13>Sep 10 11:20:33 rpmi: kmod-26-alt1 sisyphus+226359.100.1.1 1554129990 installed
<13>Sep 10 11:20:33 rpmi: libcryptsetup-2.2.0-alt1 sisyphus+236388.100.1.1 1566341912 installed
<13>Sep 10 11:20:33 rpmi: startup-0.9.9.6-alt1 sisyphus.215964.200 1542884274 installed
<13>Sep 10 11:20:34 rpmi: systemd-utils-1:243-alt1 sisyphus+237134.300.3.1 1567642540 installed
<13>Sep 10 11:20:34 rpmi: dmsetup-1.02.163-alt1 sisyphus+235860.260.6.1 1565551898 installed
<86>Sep 10 11:20:34 groupadd[7671]: group added to /etc/group: name=tape, GID=499
<86>Sep 10 11:20:34 groupadd[7671]: group added to /etc/gshadow: name=tape
<86>Sep 10 11:20:34 groupadd[7671]: new group: name=tape, GID=499
<86>Sep 10 11:20:34 groupadd[7686]: group added to /etc/group: name=dialout, GID=498
<86>Sep 10 11:20:34 groupadd[7686]: group added to /etc/gshadow: name=dialout
<86>Sep 10 11:20:34 groupadd[7686]: new group: name=dialout, GID=498
<86>Sep 10 11:20:34 groupadd[7696]: group added to /etc/group: name=input, GID=497
<86>Sep 10 11:20:34 groupadd[7696]: group added to /etc/gshadow: name=input
<86>Sep 10 11:20:34 groupadd[7696]: new group: name=input, GID=497
<86>Sep 10 11:20:34 groupadd[7709]: group added to /etc/group: name=video, GID=496
<86>Sep 10 11:20:34 groupadd[7709]: group added to /etc/gshadow: name=video
<86>Sep 10 11:20:34 groupadd[7709]: new group: name=video, GID=496
<86>Sep 10 11:20:34 groupadd[7725]: group added to /etc/group: name=render, GID=495
<86>Sep 10 11:20:34 groupadd[7725]: group added to /etc/gshadow: name=render
<86>Sep 10 11:20:34 groupadd[7725]: new group: name=render, GID=495
<13>Sep 10 11:20:34 rpmi: udev-1:243-alt1 sisyphus+237134.300.3.1 1567642540 installed
<13>Sep 10 11:20:34 rpmi: libssl1.1-1.1.1b-alt2 sisyphus+227249.100.2.1 1555667822 installed
<13>Sep 10 11:20:34 rpmi: libpython3-3.7.4-alt1 sisyphus+236519.100.1.1 1566575438 installed
<13>Sep 10 11:20:34 rpmi: python3-3.7.4-alt1 sisyphus+236519.100.1.1 1566575438 installed
<13>Sep 10 11:20:34 rpmi: python3-base-3.7.4-alt1 sisyphus+236519.100.1.1 1566575438 installed
<13>Sep 10 11:20:35 rpmi: glib2-devel-2.60.7-alt1 sisyphus+237086.100.1.1 1567540868 installed
<13>Sep 10 11:20:35 rpmi: libharfbuzz-devel-2.6.1-alt1 sisyphus+236500.100.1.1 1566557851 installed
<13>Sep 10 11:20:35 rpmi: libfreetype-devel-2.10.0-alt2 sisyphus+226881.100.2.1 1555676286 installed
<13>Sep 10 11:20:35 rpmi: fontconfig-devel-2.13.1-alt1 sisyphus+226691.100.2.2 1554598726 installed
<13>Sep 10 11:20:35 rpmi: libXft-devel-2.3.3-alt1 sisyphus+225206.1000.3.2 1552987708 installed
<86>Sep 10 11:20:35 groupadd[9932]: group added to /etc/group: name=iputils, GID=494
<86>Sep 10 11:20:35 groupadd[9932]: group added to /etc/gshadow: name=iputils
<86>Sep 10 11:20:35 groupadd[9932]: new group: name=iputils, GID=494
<86>Sep 10 11:20:35 useradd[9942]: new user: name=iputils, UID=499, GID=494, home=/dev/null, shell=/dev/null
<86>Sep 10 11:20:35 groupadd[9965]: group added to /etc/group: name=netadmin, GID=493
<86>Sep 10 11:20:35 groupadd[9965]: group added to /etc/gshadow: name=netadmin
<86>Sep 10 11:20:35 groupadd[9965]: new group: name=netadmin, GID=493
<13>Sep 10 11:20:35 rpmi: iputils-20190709-alt1 sisyphus+236473.100.1.1 1566493579 installed
sysctl: cannot stat /proc/sys/net/ipv4/ping_group_range: No such file or directory
<13>Sep 10 11:20:35 rpmi: iproute2-5.2.0-alt1 sisyphus+234078.100.2.1 1563472659 installed
<13>Sep 10 11:20:35 rpmi: rdma-core-24.0-alt3 sisyphus+233653.100.1.1 1562118436 installed
<13>Sep 10 11:20:35 rpmi: ibacm-24.0-alt3 sisyphus+233653.100.1.1 1562118436 installed
<13>Sep 10 11:20:35 rpmi: rdma-core-devel-24.0-alt3 sisyphus+233653.100.1.1 1562118436 installed
<13>Sep 10 11:20:35 rpmi: openmpi-devel-2.0.1-alt8 sisyphus+229856.100.1.1 1558540200 installed
<13>Sep 10 11:20:35 rpmi: libopenmotif-devel-2.3.8-alt1 sisyphus+222959.100.1.1 1551299718 installed
<13>Sep 10 11:20:35 rpmi: libgsl-devel-2.5-alt1 sisyphus.212796.100 1536590919 installed
<13>Sep 10 11:20:35 rpmi: liblapack-devel-1:3.8.0-alt3 sisyphus+221521.100.1.1 1550134903 installed
<13>Sep 10 11:20:35 rpmi: libfftw3-devel-3.3.8-alt1 sisyphus+226899.100.1.1 1554783258 installed
<13>Sep 10 11:20:35 rpmi: xorg-cf-files-1.0.6-alt1 1453137637 installed
<13>Sep 10 11:20:35 rpmi: imake-1.0.7-alt3 1518797773 installed
<13>Sep 10 11:20:35 rpmi: chrpath-0.16-alt1 1453066316 installed
Building target platforms: i586
Building for target i586
Wrote: /usr/src/in/nosrpm/gromacs-4.0.7-alt8.nosrc.rpm
<13>Sep 10 11:20:43 rpmi: libtool_1.5-3:1.5.26-alt12 1533413591 installed
Installing gromacs-4.0.7-alt8.src.rpm
Building target platforms: i586
Building for target i586
Executing(%prep): /bin/sh -e /usr/src/tmp/rpm-tmp.20586
+ umask 022
+ /bin/mkdir -p /usr/src/RPM/BUILD
+ cd /usr/src/RPM/BUILD
+ cd /usr/src/RPM/BUILD
+ rm -rf gromacs-4.0.7
+ echo 'Source #0 (gromacs-4.0.7.tar.gz):'
Source #0 (gromacs-4.0.7.tar.gz):
+ /bin/gzip -dc /usr/src/RPM/SOURCES/gromacs-4.0.7.tar.gz
+ /bin/tar -xf -
+ cd gromacs-4.0.7
+ /bin/chmod -c -Rf u+rwX,go-w .
+ echo 'Patch #0 (gromacs-4.0.3-alt-LIBS-LDADD.patch):'
Patch #0 (gromacs-4.0.3-alt-LIBS-LDADD.patch):
+ /usr/bin/patch -p0
patching file configure.ac
patching file src/tools/Makefile.am
++ find ./ -name Makefile.am
+ sed -i 's|^\(AM_CPPFLAGS.*\)|\1 -g|' ./src/tools/Makefile.am ./src/ngmx/Makefile.am ./src/mdlib/Makefile.am ./src/kernel/Makefile.am ./src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/Makefile.am ./src/gmxlib/nonbonded/nb_kernel_x86_64_sse/Makefile.am ./src/gmxlib/nonbonded/nb_kernel_ppc_altivec/Makefile.am ./src/gmxlib/nonbonded/nb_kernel_ia64_single/Makefile.am ./src/gmxlib/nonbonded/nb_kernel_ia64_double/Makefile.am ./src/gmxlib/nonbonded/nb_kernel_ia32_sse2/Makefile.am ./src/gmxlib/nonbonded/nb_kernel_ia32_sse/Makefile.am ./src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/Makefile.am ./src/gmxlib/nonbonded/nb_kernel_bluegene/Makefile.am ./src/gmxlib/nonbonded/nb_kernel/Makefile.am ./src/gmxlib/nonbonded/Makefile.am ./src/gmxlib/gmx_lapack/Makefile.am ./src/gmxlib/gmx_blas/Makefile.am ./src/gmxlib/Makefile.am ./src/contrib/Makefile.am ./src/Makefile.am ./share/tutor/water/Makefile.am ./share/tutor/speptide/Makefile.am ./share/tutor/nmr2/Makefile.am ./share/tutor/nmr1/Makefile.am ./share/tutor/mixed/Makefile.am ./share/tutor/methanol/Makefile.am ./share/tutor/gmxdemo/Makefile.am ./share/tutor/Makefile.am ./share/top/Makefile.am ./share/template/Makefile.am ./share/html/online/Makefile.am ./share/html/images/Makefile.am ./share/html/Makefile.am ./share/Makefile.am ./scripts/Makefile.am ./man/man1/Makefile.am ./man/Makefile.am ./include/types/Makefile.am ./include/Makefile.am ./admin/Makefile.am ./Makefile.am
+ exit 0
Executing(%build): /bin/sh -e /usr/src/tmp/rpm-tmp.83805
+ umask 022
+ /bin/mkdir -p /usr/src/RPM/BUILD
+ cd /usr/src/RPM/BUILD
+ cd gromacs-4.0.7
++ mpi-selector --list
++ grep openmpi
+ mpi-selector --set openmpi
+ source /etc/profile.d/mpi-selector.sh
++ mpi_selector_dir=/var/lib/mpi-selector/data
++ mpi_selector_homefile=/usr/src/.mpi-selector
++ mpi_selector_sysfile=/etc/sysconfig/mpi-selector
++ mpi_selection=
++ test -f /usr/src/.mpi-selector
+++ cat /usr/src/.mpi-selector
++ mpi_selection=openmpi
++ test openmpi '!=' '' -a -f /var/lib/mpi-selector/data/openmpi.sh
++ . /var/lib/mpi-selector/data/openmpi.sh
+++ echo /usr/src/bin:/bin:/usr/bin:/usr/X11R6/bin:/usr/games
+++ grep -q /usr/lib/openmpi/bin
+++ PATH=/usr/lib/openmpi/bin:/usr/src/bin:/bin:/usr/bin:/usr/X11R6/bin:/usr/games
+++ export PATH
+++ echo
+++ grep -q /usr/lib/openmpi/lib
+++ LD_LIBRARY_PATH=/usr/lib/openmpi/lib
+++ export LD_LIBRARY_PATH
+++ echo
+++ grep -q /usr/lib/openmpi/man
+++ MANPATH=/usr/lib/openmpi/man:
+++ export MANPATH
+ export 'OMPI_LDFLAGS=-Wl,--as-needed,-rpath,/usr/lib/openmpi/lib -L/usr/lib/openmpi/lib'
+ OMPI_LDFLAGS='-Wl,--as-needed,-rpath,/usr/lib/openmpi/lib -L/usr/lib/openmpi/lib'
+ sed -i 's|^runpath_var=LD_RUN_PATH|runpath_var=|g' acinclude.m4
+ autoreconf -fisv
autoreconf-default: Entering directory `.'
autoreconf-default: configure.ac: not using Gettext
autoreconf-default: running: aclocal --force 
configure.ac:419: warning: AC_CACHE_VAL(ac_o3, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_faltivec, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_maltivec, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_mabialtivec, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_fno_schedule_insns, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_m_cpu_7450, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_m_tune_970, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_m_cpu_powerpc, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_funroll_all_loops, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_guessed_cflags, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_guessed_fflags, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:507: ACX_CHECK_F77_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:455: warning: AC_CACHE_VAL(acx_float_format, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:164: ACX_FLOAT_FORMAT is expanded from...
configure.ac:455: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:3942: _LT_AC_LANG_C_CONFIG is expanded from...
acinclude.m4:3941: AC_LIBTOOL_LANG_C_CONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:3942: _LT_AC_LANG_C_CONFIG is expanded from...
acinclude.m4:3941: AC_LIBTOOL_LANG_C_CONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from...
acinclude.m4:1580: _LT_AC_SYS_LIBPATH_AIX is expanded from...
acinclude.m4:6633: AC_LIBTOOL_PROG_LD_SHLIBS is expanded from...
acinclude.m4:3942: _LT_AC_LANG_C_CONFIG is expanded from...
acinclude.m4:3941: AC_LIBTOOL_LANG_C_CONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from...
acinclude.m4:1580: _LT_AC_SYS_LIBPATH_AIX is expanded from...
acinclude.m4:4023: _LT_AC_LANG_CXX_CONFIG is expanded from...
acinclude.m4:4022: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_CXX, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:4023: _LT_AC_LANG_CXX_CONFIG is expanded from...
acinclude.m4:4022: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_CXX, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:4023: _LT_AC_LANG_CXX_CONFIG is expanded from...
acinclude.m4:4022: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_F77, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:5190: _LT_AC_LANG_F77_CONFIG is expanded from...
acinclude.m4:5189: AC_LIBTOOL_LANG_F77_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_F77, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:5190: _LT_AC_LANG_F77_CONFIG is expanded from...
acinclude.m4:5189: AC_LIBTOOL_LANG_F77_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_GCJ, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:5292: _LT_AC_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:5291: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_GCJ, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:5292: _LT_AC_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:5291: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from...
acinclude.m4:1580: _LT_AC_SYS_LIBPATH_AIX is expanded from...
acinclude.m4:6633: AC_LIBTOOL_PROG_LD_SHLIBS is expanded from...
acinclude.m4:5292: _LT_AC_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:5291: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
autoreconf-default: configure.ac: tracing
configure.ac:419: warning: AC_CACHE_VAL(ac_o3, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_faltivec, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_maltivec, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_mabialtivec, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_fno_schedule_insns, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_m_cpu_7450, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_m_tune_970, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_m_cpu_powerpc, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_funroll_all_loops, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_guessed_cflags, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_guessed_fflags, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:507: ACX_CHECK_F77_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:455: warning: AC_CACHE_VAL(acx_float_format, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:164: ACX_FLOAT_FORMAT is expanded from...
configure.ac:455: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:3942: _LT_AC_LANG_C_CONFIG is expanded from...
acinclude.m4:3941: AC_LIBTOOL_LANG_C_CONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:3942: _LT_AC_LANG_C_CONFIG is expanded from...
acinclude.m4:3941: AC_LIBTOOL_LANG_C_CONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from...
acinclude.m4:1580: _LT_AC_SYS_LIBPATH_AIX is expanded from...
acinclude.m4:6633: AC_LIBTOOL_PROG_LD_SHLIBS is expanded from...
acinclude.m4:3942: _LT_AC_LANG_C_CONFIG is expanded from...
acinclude.m4:3941: AC_LIBTOOL_LANG_C_CONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from...
acinclude.m4:1580: _LT_AC_SYS_LIBPATH_AIX is expanded from...
acinclude.m4:4023: _LT_AC_LANG_CXX_CONFIG is expanded from...
acinclude.m4:4022: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_CXX, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:4023: _LT_AC_LANG_CXX_CONFIG is expanded from...
acinclude.m4:4022: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_CXX, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:4023: _LT_AC_LANG_CXX_CONFIG is expanded from...
acinclude.m4:4022: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_F77, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:5190: _LT_AC_LANG_F77_CONFIG is expanded from...
acinclude.m4:5189: AC_LIBTOOL_LANG_F77_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_F77, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:5190: _LT_AC_LANG_F77_CONFIG is expanded from...
acinclude.m4:5189: AC_LIBTOOL_LANG_F77_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_GCJ, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:5292: _LT_AC_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:5291: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_GCJ, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:5292: _LT_AC_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:5291: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from...
acinclude.m4:1580: _LT_AC_SYS_LIBPATH_AIX is expanded from...
acinclude.m4:6633: AC_LIBTOOL_PROG_LD_SHLIBS is expanded from...
acinclude.m4:5292: _LT_AC_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:5291: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
autoreconf-default: running: libtoolize --force
You should update your `aclocal.m4' by running aclocal.
Putting files in AC_CONFIG_AUX_DIR, `config'.
autoreconf-default: configure.ac: not using Intltool
autoreconf-default: configure.ac: not using gtk-doc
configure.ac:419: warning: AC_CACHE_VAL(ac_o3, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_faltivec, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_maltivec, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_mabialtivec, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_fno_schedule_insns, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_m_cpu_7450, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_m_tune_970, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_m_cpu_powerpc, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_funroll_all_loops, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_guessed_cflags, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_guessed_fflags, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:507: ACX_CHECK_F77_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:455: warning: AC_CACHE_VAL(acx_float_format, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:164: ACX_FLOAT_FORMAT is expanded from...
configure.ac:455: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:3942: _LT_AC_LANG_C_CONFIG is expanded from...
acinclude.m4:3941: AC_LIBTOOL_LANG_C_CONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:3942: _LT_AC_LANG_C_CONFIG is expanded from...
acinclude.m4:3941: AC_LIBTOOL_LANG_C_CONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from...
acinclude.m4:1580: _LT_AC_SYS_LIBPATH_AIX is expanded from...
acinclude.m4:6633: AC_LIBTOOL_PROG_LD_SHLIBS is expanded from...
acinclude.m4:3942: _LT_AC_LANG_C_CONFIG is expanded from...
acinclude.m4:3941: AC_LIBTOOL_LANG_C_CONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from...
acinclude.m4:1580: _LT_AC_SYS_LIBPATH_AIX is expanded from...
acinclude.m4:4023: _LT_AC_LANG_CXX_CONFIG is expanded from...
acinclude.m4:4022: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_CXX, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:4023: _LT_AC_LANG_CXX_CONFIG is expanded from...
acinclude.m4:4022: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_CXX, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:4023: _LT_AC_LANG_CXX_CONFIG is expanded from...
acinclude.m4:4022: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_F77, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:5190: _LT_AC_LANG_F77_CONFIG is expanded from...
acinclude.m4:5189: AC_LIBTOOL_LANG_F77_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_F77, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:5190: _LT_AC_LANG_F77_CONFIG is expanded from...
acinclude.m4:5189: AC_LIBTOOL_LANG_F77_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_GCJ, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:5292: _LT_AC_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:5291: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_GCJ, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:5292: _LT_AC_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:5291: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from...
acinclude.m4:1580: _LT_AC_SYS_LIBPATH_AIX is expanded from...
acinclude.m4:6633: AC_LIBTOOL_PROG_LD_SHLIBS is expanded from...
acinclude.m4:5292: _LT_AC_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:5291: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
autoreconf-default: running: /usr/bin/autoconf-2.60 --force
configure.ac:419: warning: AC_CACHE_VAL(ac_o3, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_faltivec, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_maltivec, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_mabialtivec, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_fno_schedule_insns, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_m_cpu_7450, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_m_tune_970, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_m_cpu_powerpc, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_funroll_all_loops, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_guessed_cflags, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_guessed_fflags, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:507: ACX_CHECK_F77_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:455: warning: AC_CACHE_VAL(acx_float_format, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:164: ACX_FLOAT_FORMAT is expanded from...
configure.ac:455: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:3942: _LT_AC_LANG_C_CONFIG is expanded from...
acinclude.m4:3941: AC_LIBTOOL_LANG_C_CONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:3942: _LT_AC_LANG_C_CONFIG is expanded from...
acinclude.m4:3941: AC_LIBTOOL_LANG_C_CONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from...
acinclude.m4:1580: _LT_AC_SYS_LIBPATH_AIX is expanded from...
acinclude.m4:6633: AC_LIBTOOL_PROG_LD_SHLIBS is expanded from...
acinclude.m4:3942: _LT_AC_LANG_C_CONFIG is expanded from...
acinclude.m4:3941: AC_LIBTOOL_LANG_C_CONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from...
acinclude.m4:1580: _LT_AC_SYS_LIBPATH_AIX is expanded from...
acinclude.m4:4023: _LT_AC_LANG_CXX_CONFIG is expanded from...
acinclude.m4:4022: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_CXX, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:4023: _LT_AC_LANG_CXX_CONFIG is expanded from...
acinclude.m4:4022: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_CXX, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:4023: _LT_AC_LANG_CXX_CONFIG is expanded from...
acinclude.m4:4022: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_F77, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:5190: _LT_AC_LANG_F77_CONFIG is expanded from...
acinclude.m4:5189: AC_LIBTOOL_LANG_F77_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_F77, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:5190: _LT_AC_LANG_F77_CONFIG is expanded from...
acinclude.m4:5189: AC_LIBTOOL_LANG_F77_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_GCJ, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:5292: _LT_AC_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:5291: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_GCJ, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:5292: _LT_AC_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:5291: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from...
acinclude.m4:1580: _LT_AC_SYS_LIBPATH_AIX is expanded from...
acinclude.m4:6633: AC_LIBTOOL_PROG_LD_SHLIBS is expanded from...
acinclude.m4:5292: _LT_AC_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:5291: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
autoreconf-default: running: /usr/bin/autoheader-2.60 --force
configure.ac:419: warning: AC_CACHE_VAL(ac_o3, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_faltivec, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_maltivec, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_mabialtivec, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_fno_schedule_insns, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_m_cpu_7450, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_m_tune_970, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_m_cpu_powerpc, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_funroll_all_loops, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_guessed_cflags, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_guessed_fflags, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:507: ACX_CHECK_F77_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:455: warning: AC_CACHE_VAL(acx_float_format, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:164: ACX_FLOAT_FORMAT is expanded from...
configure.ac:455: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:3942: _LT_AC_LANG_C_CONFIG is expanded from...
acinclude.m4:3941: AC_LIBTOOL_LANG_C_CONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:3942: _LT_AC_LANG_C_CONFIG is expanded from...
acinclude.m4:3941: AC_LIBTOOL_LANG_C_CONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from...
acinclude.m4:1580: _LT_AC_SYS_LIBPATH_AIX is expanded from...
acinclude.m4:6633: AC_LIBTOOL_PROG_LD_SHLIBS is expanded from...
acinclude.m4:3942: _LT_AC_LANG_C_CONFIG is expanded from...
acinclude.m4:3941: AC_LIBTOOL_LANG_C_CONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from...
acinclude.m4:1580: _LT_AC_SYS_LIBPATH_AIX is expanded from...
acinclude.m4:4023: _LT_AC_LANG_CXX_CONFIG is expanded from...
acinclude.m4:4022: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_CXX, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:4023: _LT_AC_LANG_CXX_CONFIG is expanded from...
acinclude.m4:4022: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_CXX, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:4023: _LT_AC_LANG_CXX_CONFIG is expanded from...
acinclude.m4:4022: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_F77, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:5190: _LT_AC_LANG_F77_CONFIG is expanded from...
acinclude.m4:5189: AC_LIBTOOL_LANG_F77_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_F77, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:5190: _LT_AC_LANG_F77_CONFIG is expanded from...
acinclude.m4:5189: AC_LIBTOOL_LANG_F77_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_GCJ, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:5292: _LT_AC_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:5291: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_GCJ, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:5292: _LT_AC_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:5291: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from...
acinclude.m4:1580: _LT_AC_SYS_LIBPATH_AIX is expanded from...
acinclude.m4:6633: AC_LIBTOOL_PROG_LD_SHLIBS is expanded from...
acinclude.m4:5292: _LT_AC_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:5291: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
autoreconf-default: running: automake --add-missing --force-missing
configure.ac:419: warning: AC_CACHE_VAL(ac_o3, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_faltivec, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_maltivec, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_mabialtivec, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_fno_schedule_insns, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_m_cpu_7450, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_m_tune_970, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_m_cpu_powerpc, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_funroll_all_loops, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_guessed_cflags, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_guessed_fflags, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:507: ACX_CHECK_F77_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:455: warning: AC_CACHE_VAL(acx_float_format, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:164: ACX_FLOAT_FORMAT is expanded from...
configure.ac:455: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:3942: _LT_AC_LANG_C_CONFIG is expanded from...
acinclude.m4:3941: AC_LIBTOOL_LANG_C_CONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:3942: _LT_AC_LANG_C_CONFIG is expanded from...
acinclude.m4:3941: AC_LIBTOOL_LANG_C_CONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from...
acinclude.m4:1580: _LT_AC_SYS_LIBPATH_AIX is expanded from...
acinclude.m4:6633: AC_LIBTOOL_PROG_LD_SHLIBS is expanded from...
acinclude.m4:3942: _LT_AC_LANG_C_CONFIG is expanded from...
acinclude.m4:3941: AC_LIBTOOL_LANG_C_CONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from...
acinclude.m4:1580: _LT_AC_SYS_LIBPATH_AIX is expanded from...
acinclude.m4:4023: _LT_AC_LANG_CXX_CONFIG is expanded from...
acinclude.m4:4022: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_CXX, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:4023: _LT_AC_LANG_CXX_CONFIG is expanded from...
acinclude.m4:4022: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_CXX, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:4023: _LT_AC_LANG_CXX_CONFIG is expanded from...
acinclude.m4:4022: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_F77, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:5190: _LT_AC_LANG_F77_CONFIG is expanded from...
acinclude.m4:5189: AC_LIBTOOL_LANG_F77_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_F77, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:5190: _LT_AC_LANG_F77_CONFIG is expanded from...
acinclude.m4:5189: AC_LIBTOOL_LANG_F77_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_GCJ, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:5292: _LT_AC_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:5291: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_GCJ, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:5292: _LT_AC_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:5291: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from...
acinclude.m4:1580: _LT_AC_SYS_LIBPATH_AIX is expanded from...
acinclude.m4:6633: AC_LIBTOOL_PROG_LD_SHLIBS is expanded from...
acinclude.m4:5292: _LT_AC_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:5291: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:331: installing 'config/compile'
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
src/tools/Makefile.am:68: warning: 'LDFLAGS' is a user variable, you should not override it;
src/tools/Makefile.am:68: use 'AM_LDFLAGS' instead
autoreconf-default: Leaving directory `.'
+ mkdir single
+ pushd single
~/RPM/BUILD/gromacs-4.0.7/single ~/RPM/BUILD/gromacs-4.0.7
+ buildThis float disable
+ ln -s ../configure .
+ CFLAGS='-pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic'
+ export CFLAGS
+ CXXFLAGS='-pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic'
+ export CXXFLAGS
+ FFLAGS='-pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic'
+ export FFLAGS
+ '[' -n '' ']'
++ printf %s '-pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic'
++ sed -r 's/(^|[[:space:]]+)-[^m][^[:space:]]*//g'
+ ASFLAGS=' -march=i586 -mtune=generic'
+ export ASFLAGS
+ export lt_cv_prog_cc_static_works=no
+ lt_cv_prog_cc_static_works=no
+ export lt_cv_deplibs_check_method=pass_all
+ lt_cv_deplibs_check_method=pass_all
+ readlink -e -- ./configure
+ xargs -ri dirname -- '{}'
+ xargs -ri find '{}' -type f '(' -name config.sub -or -name config.guess ')' -printf '%h/\n'
+ sort -u
+ xargs -rn1 install -pm755 -- /usr/share/gnu-config/config.sub /usr/share/gnu-config/config.guess
+ ./configure --build=i586-alt-linux --host=i586-alt-linux --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib --libexecdir=/usr/lib --localstatedir=/var/lib --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info --disable-dependency-tracking --disable-silent-rules --without-included-gettext --disable-rpath --enable-static=no --enable-shared --enable-float --enable-mpi --enable-prefetch-forces --enable-fortran --with-gnu-ld --with-fft=fftw3 --with-x --with-gsl --disable-mpi --program-suffix= --with-external-blas=-lopenblas
configure: WARNING: unrecognized options: --without-included-gettext, --disable-rpath, --enable-prefetch-forces
checking build system type... i586-alt-linux-gnu
checking host system type... i586-alt-linux-gnu
checking for a BSD-compatible install... /bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking whether UID '526' is supported by ustar format... yes
checking whether GID '526' is supported by ustar format... yes
checking how to create a ustar tar archive... gnutar
checking for i586-alt-linux-cc... no
checking for i586-alt-linux-icc... no
checking for i586-alt-linux-xlc... no
checking for i586-alt-linux-gcc... i586-alt-linux-gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether i586-alt-linux-gcc accepts -g... yes
checking for i586-alt-linux-gcc option to accept ISO C89... none needed
checking whether i586-alt-linux-gcc understands -c and -o together... yes
checking whether make supports the include directive... yes (GNU style)
checking dependency style of i586-alt-linux-gcc... none
checking for i586-alt-linux-f77... no
checking for i586-alt-linux-ifort... no
checking for i586-alt-linux-xlf... no
checking for i586-alt-linux-xlf77... no
checking for i586-alt-linux-cf77... no
checking for i586-alt-linux-fl32... no
checking for i586-alt-linux-g77... no
checking for i586-alt-linux-fort77... no
checking for i586-alt-linux-f90... no
checking for i586-alt-linux-xlf90... no
checking for i586-alt-linux-pgf77... no
checking for i586-alt-linux-cf77... no
checking for i586-alt-linux-fort... no
checking for i586-alt-linux-fort77... no
checking for i586-alt-linux-pgf90... no
checking for f77... f77
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether f77 accepts -g... yes
checking dependency style of i586-alt-linux-gcc... none
checking how to get verbose linking output from f77... -v
checking for Fortran 77 libraries of f77...  -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
checking for dummy main to link with Fortran 77 libraries... none
checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore
checking how to run the C preprocessor... i586-alt-linux-gcc -E
checking whether i586-alt-linux-gcc accepts -O3... yes
checking whether i586-alt-linux-gcc accepts -funroll-all-loops... yes
******************************************
* Using CFLAGS from environment variable *
******************************************
******************************************
* Using FFLAGS from environment variable *
******************************************
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking whether byte ordering is bigendian... no
checking size of int... 4
checking size of long int... 4
checking size of long long int... 8
checking size of off_t... 4
checking that size_t can hold pointers... yes
checking floating-point format... IEEE754 (little-endian byte and word order)
checking whether ln -s works... yes
checking whether make sets $(MAKE)... (cached) yes
checking for a sed that does not truncate output... /bin/sed
checking for ld used by i586-alt-linux-gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for /usr/bin/ld option to reload object files... -r
checking for BSD-compatible nm... /usr/bin/nm -B
checking how to recognise dependent libraries... (cached) pass_all
checking dlfcn.h usability... yes
checking dlfcn.h presence... yes
checking for dlfcn.h... yes
checking for i586-alt-linux-g++... i586-alt-linux-g++
checking whether we are using the GNU C++ compiler... yes
checking whether i586-alt-linux-g++ accepts -g... yes
checking dependency style of i586-alt-linux-g++... none
checking how to run the C++ preprocessor... i586-alt-linux-g++ -E
checking the maximum length of command line arguments... 32768
checking command to parse /usr/bin/nm -B output from i586-alt-linux-gcc object... ok
checking for objdir... .libs
checking for i586-alt-linux-ar... no
checking for ar... ar
checking for i586-alt-linux-ranlib... no
checking for ranlib... ranlib
checking for i586-alt-linux-strip... no
checking for strip... strip
checking if i586-alt-linux-gcc supports -fno-rtti -fno-exceptions... no
checking for i586-alt-linux-gcc option to produce PIC... -fPIC
checking if i586-alt-linux-gcc PIC flag -fPIC works... yes
checking if i586-alt-linux-gcc static flag -static works... no
checking if i586-alt-linux-gcc supports -c -o file.o... yes
checking whether the i586-alt-linux-gcc linker (/usr/bin/ld) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... cat: '/etc/ld.so.conf.d/*.conf': No such file or directory
GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
configure: creating libtool
appending configuration tag "CXX" to libtool
checking for ld used by i586-alt-linux-g++... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking whether the i586-alt-linux-g++ linker (/usr/bin/ld) supports shared libraries... yes
checking for i586-alt-linux-g++ option to produce PIC... -fPIC
checking if i586-alt-linux-g++ PIC flag -fPIC works... yes
checking if i586-alt-linux-g++ static flag -static works... no
checking if i586-alt-linux-g++ supports -c -o file.o... yes
checking whether the i586-alt-linux-g++ linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... cat: '/etc/ld.so.conf.d/*.conf': No such file or directory
GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
appending configuration tag "F77" to libtool
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking for f77 option to produce PIC... -fPIC
checking if f77 PIC flag -fPIC works... yes
checking if f77 static flag -static works... no
checking if f77 supports -c -o file.o... yes
checking whether the f77 linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... cat: '/etc/ld.so.conf.d/*.conf': No such file or directory
GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... 64
checking for _LARGEFILE_SOURCE value needed for large files... no
checking for sqrt in -lm... yes
checking for fftw3.h... yes
checking for main in -lfftw3f... yes
checking rpc/rpc.h usability... yes
checking rpc/rpc.h presence... yes
checking for rpc/rpc.h... yes
checking for rpc/xdr.h... yes
checking for xdr_float in -lnsl... no
checking for working memcmp... yes
checking return type of signal handlers... void
checking for off_t... yes
checking for vprintf... yes
checking for _doprnt... no
checking if malloc debugging is wanted... no
checking for strcasecmp... yes
checking for strdup... yes
checking for bool... no
checking size of int... (cached) 4
checking size of long int... (cached) 4
checking size of long long int... (cached) 8
checking size of off_t... (cached) 4
checking size of void*... 4
checking for X... libraries , headers 
checking for gethostbyname... yes
checking for connect... yes
checking for remove... yes
checking for shmat... yes
checking for IceConnectionNumber in -lICE... yes
checking gsl/gsl_version.h usability... yes
checking gsl/gsl_version.h presence... yes
checking for gsl/gsl_version.h... yes
checking for main in -lgslcblas... yes
checking for main in -lgsl... yes
checking libxml/parser.h usability... no
checking libxml/parser.h presence... no
checking for libxml/parser.h... no
checking limits.h usability... yes
checking limits.h presence... yes
checking for limits.h... yes
checking for strings.h... (cached) yes
checking for unistd.h... (cached) yes
checking for unistd.h... (cached) yes
checking for an ANSI C-conforming const... yes
checking for size_t... yes
checking whether struct tm is in sys/time.h or time.h... time.h
checking for uid_t in sys/types.h... yes
checking for inline... inline
checking whether your compiler can handle assembly files (*.s)... yes
checking whether as fully supports ia32 SSE... yes
checking whether as fully supports ia32 3DNow! instructions... yes
checking whether byte ordering is bigendian... (cached) no
checking if the compiler supports gcc inline assembly... yes
checking if the compiler supports MSVC inline assembly... no
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating src/gmxlib/Makefile
config.status: creating src/gmxlib/gmx_blas/Makefile
config.status: creating src/gmxlib/gmx_lapack/Makefile
config.status: creating src/gmxlib/nonbonded/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_ia32_sse/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_ia32_sse2/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_x86_64_sse/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_ppc_altivec/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_ia64_single/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_ia64_double/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_bluegene/Makefile
config.status: creating include/Makefile
config.status: creating include/types/Makefile
config.status: creating src/mdlib/Makefile
config.status: creating src/kernel/Makefile
config.status: creating src/tools/Makefile
config.status: creating src/ngmx/Makefile
config.status: creating src/contrib/Makefile
config.status: creating scripts/Makefile
config.status: creating admin/Makefile
config.status: creating share/Makefile
config.status: creating share/tutor/Makefile
config.status: creating share/tutor/gmxdemo/Makefile
config.status: creating share/tutor/nmr1/Makefile
config.status: creating share/tutor/nmr2/Makefile
config.status: creating share/tutor/water/Makefile
config.status: creating share/tutor/mixed/Makefile
config.status: creating share/tutor/methanol/Makefile
config.status: creating share/tutor/speptide/Makefile
config.status: creating share/template/Makefile
config.status: creating share/top/Makefile
config.status: creating share/html/Makefile
config.status: creating share/html/images/Makefile
config.status: creating share/html/online/Makefile
config.status: creating man/Makefile
config.status: creating man/man1/Makefile
config.status: creating src/config.h
config.status: executing depfiles commands
configure: WARNING: unrecognized options: --without-included-gettext, --disable-rpath, --enable-prefetch-forces

+ sed -i 's|^hardcode_libdir_flag_spec=.*|hardcode_libdir_flag_spec=""|g' libtool
+ sed -i 's|^runpath_var=LD_RUN_PATH|runpath_var=DIE_RPATH_DIE|g' libtool
+ make -j8
Making all in include
Making all in .
make[2]: Nothing to be done for 'all-am'.
Making all in types
make[2]: Nothing to be done for 'all'.
Making all in src
make  all-recursive
Making all in gmxlib
Making all in nonbonded
Making all in nb_kernel_ia32_sse
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
/bin/sh ../../../../libtool    --mode=compile i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel110_ia32_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel110_ia32_sse.s
mkdir .libs
 i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel110_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel110_ia32_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
/bin/sh ../../../../libtool    --mode=compile i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel100_ia32_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel100_ia32_sse.s
 i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel100_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel100_ia32_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
/bin/sh ../../../../libtool    --mode=compile i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel010_ia32_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel010_ia32_sse.s
 i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel010_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel010_ia32_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
/bin/sh ../../../../libtool    --mode=compile i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel101_ia32_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel101_ia32_sse.s
 i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel101_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel101_ia32_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
/bin/sh ../../../../libtool    --mode=compile i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel104_ia32_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel104_ia32_sse.s
 i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel104_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel104_ia32_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
/bin/sh ../../../../libtool    --mode=compile i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel113_ia32_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel113_ia32_sse.s
 i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel113_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel113_ia32_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
/bin/sh ../../../../libtool    --mode=compile i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel114_ia32_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel114_ia32_sse.s
 i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel114_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel114_ia32_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
/bin/sh ../../../../libtool    --mode=compile i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel111_ia32_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel111_ia32_sse.s
 i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel111_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel111_ia32_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
/bin/sh ../../../../libtool    --mode=compile i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel112_ia32_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel112_ia32_sse.s
 i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel112_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel112_ia32_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
/bin/sh ../../../../libtool    --mode=compile i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel103_ia32_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel103_ia32_sse.s
 i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel103_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel103_ia32_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
/bin/sh ../../../../libtool    --mode=compile i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel030_ia32_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel030_ia32_sse.s
 i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel030_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel030_ia32_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
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 i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel304_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel304_ia32_sse.o
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/bin/sh ../../../../libtool    --mode=compile i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel310_ia32_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel310_ia32_sse.s
 i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel310_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel310_ia32_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
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/bin/sh ../../../../libtool    --mode=compile i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel311_ia32_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel311_ia32_sse.s
 i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel311_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel311_ia32_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
/bin/sh ../../../../libtool    --mode=compile i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel331_ia32_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel331_ia32_sse.s
 i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel331_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel331_ia32_sse.o
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/bin/sh ../../../../libtool    --mode=compile i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel333_ia32_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel333_ia32_sse.s
 i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel333_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel333_ia32_sse.o
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/bin/sh ../../../../libtool    --mode=compile i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel330_ia32_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel330_ia32_sse.s
 i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel330_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel330_ia32_sse.o
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/bin/sh ../../../../libtool    --mode=compile i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel332_ia32_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel332_ia32_sse.s
 i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel332_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel332_ia32_sse.o
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make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
/bin/sh ../../../../libtool    --mode=compile i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel313_ia32_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel313_ia32_sse.s
 i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel313_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel313_ia32_sse.o
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/bin/sh ../../../../libtool    --mode=compile i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel334_ia32_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel334_ia32_sse.s
 i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel334_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel334_ia32_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
/bin/sh ../../../../libtool    --mode=compile i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel312_ia32_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel312_ia32_sse.s
 i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel312_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel312_ia32_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
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/bin/sh ../../../../libtool    --mode=compile i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel410_ia32_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel410_ia32_sse.s
 i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel410_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel410_ia32_sse.o
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/bin/sh ../../../../libtool    --mode=compile i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel314_ia32_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel314_ia32_sse.s
 i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel314_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel314_ia32_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
/bin/sh ../../../../libtool    --mode=compile i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel430_ia32_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel430_ia32_sse.s
 i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel430_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel430_ia32_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
/bin/sh ../../../../libtool    --mode=compile i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel_ia32_sse_test_asm.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel_ia32_sse_test_asm.s
 i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel_ia32_sse_test_asm.s  -fPIC -DPIC -o .libs/nb_kernel_ia32_sse_test_asm.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
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/bin/sh ../../../../libtool    --mode=compile i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel400_ia32_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel400_ia32_sse.s
 i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel400_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel400_ia32_sse.o
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/bin/sh ../../../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse -I../../../../src  -I../../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel_ia32_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel_ia32_sse.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse -I../../../../src -I../../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel_ia32_sse.c  -fPIC -DPIC -o .libs/nb_kernel_ia32_sse.o
../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel_ia32_sse.c: In function 'nb_kernel_ia32_sse_test':
../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel_ia32_sse.c:210:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
     if(log)
     ^~
../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel_ia32_sse.c:213:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
  nb_kernel_ia32_sse_present = TRUE;
  ^~~~~~~~~~~~~~~~~~~~~~~~~~
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
/bin/sh ../../../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o libnb_kernel_ia32_sse.la  nb_kernel010_ia32_sse.lo nb_kernel030_ia32_sse.lo nb_kernel100_ia32_sse.lo nb_kernel101_ia32_sse.lo nb_kernel102_ia32_sse.lo nb_kernel103_ia32_sse.lo nb_kernel104_ia32_sse.lo nb_kernel110_ia32_sse.lo nb_kernel111_ia32_sse.lo nb_kernel112_ia32_sse.lo nb_kernel113_ia32_sse.lo nb_kernel114_ia32_sse.lo nb_kernel130_ia32_sse.lo nb_kernel131_ia32_sse.lo nb_kernel132_ia32_sse.lo nb_kernel133_ia32_sse.lo nb_kernel134_ia32_sse.lo nb_kernel200_ia32_sse.lo nb_kernel201_ia32_sse.lo nb_kernel202_ia32_sse.lo nb_kernel203_ia32_sse.lo nb_kernel204_ia32_sse.lo nb_kernel210_ia32_sse.lo nb_kernel211_ia32_sse.lo nb_kernel212_ia32_sse.lo nb_kernel213_ia32_sse.lo nb_kernel214_ia32_sse.lo nb_kernel230_ia32_sse.lo nb_kernel231_ia32_sse.lo nb_kernel232_ia32_sse.lo nb_kernel233_ia32_sse.lo nb_kernel234_ia32_sse.lo nb_kernel300_ia32_sse.lo nb_kernel301_ia32_sse.lo nb_kernel302_ia32_sse.lo nb_kernel303_ia32_sse.lo nb_kernel304_ia32_sse.lo nb_kernel310_ia32_sse.lo nb_kernel311_ia32_sse.lo nb_kernel312_ia32_sse.lo nb_kernel313_ia32_sse.lo nb_kernel314_ia32_sse.lo nb_kernel330_ia32_sse.lo nb_kernel331_ia32_sse.lo nb_kernel332_ia32_sse.lo nb_kernel333_ia32_sse.lo nb_kernel334_ia32_sse.lo nb_kernel400_ia32_sse.lo nb_kernel410_ia32_sse.lo nb_kernel430_ia32_sse.lo nb_kernel_ia32_sse_test_asm.lo nb_kernel_ia32_sse.lo  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
ar cru .libs/libnb_kernel_ia32_sse.a .libs/nb_kernel010_ia32_sse.o .libs/nb_kernel030_ia32_sse.o .libs/nb_kernel100_ia32_sse.o .libs/nb_kernel101_ia32_sse.o .libs/nb_kernel102_ia32_sse.o .libs/nb_kernel103_ia32_sse.o .libs/nb_kernel104_ia32_sse.o .libs/nb_kernel110_ia32_sse.o .libs/nb_kernel111_ia32_sse.o .libs/nb_kernel112_ia32_sse.o .libs/nb_kernel113_ia32_sse.o .libs/nb_kernel114_ia32_sse.o .libs/nb_kernel130_ia32_sse.o .libs/nb_kernel131_ia32_sse.o .libs/nb_kernel132_ia32_sse.o .libs/nb_kernel133_ia32_sse.o .libs/nb_kernel134_ia32_sse.o .libs/nb_kernel200_ia32_sse.o .libs/nb_kernel201_ia32_sse.o .libs/nb_kernel202_ia32_sse.o .libs/nb_kernel203_ia32_sse.o .libs/nb_kernel204_ia32_sse.o .libs/nb_kernel210_ia32_sse.o .libs/nb_kernel211_ia32_sse.o .libs/nb_kernel212_ia32_sse.o .libs/nb_kernel213_ia32_sse.o .libs/nb_kernel214_ia32_sse.o .libs/nb_kernel230_ia32_sse.o .libs/nb_kernel231_ia32_sse.o .libs/nb_kernel232_ia32_sse.o .libs/nb_kernel233_ia32_sse.o .libs/nb_kernel234_ia32_sse.o .libs/nb_kernel300_ia32_sse.o .libs/nb_kernel301_ia32_sse.o .libs/nb_kernel302_ia32_sse.o .libs/nb_kernel303_ia32_sse.o .libs/nb_kernel304_ia32_sse.o .libs/nb_kernel310_ia32_sse.o .libs/nb_kernel311_ia32_sse.o .libs/nb_kernel312_ia32_sse.o .libs/nb_kernel313_ia32_sse.o .libs/nb_kernel314_ia32_sse.o .libs/nb_kernel330_ia32_sse.o .libs/nb_kernel331_ia32_sse.o .libs/nb_kernel332_ia32_sse.o .libs/nb_kernel333_ia32_sse.o .libs/nb_kernel334_ia32_sse.o .libs/nb_kernel400_ia32_sse.o .libs/nb_kernel410_ia32_sse.o .libs/nb_kernel430_ia32_sse.o .libs/nb_kernel_ia32_sse_test_asm.o .libs/nb_kernel_ia32_sse.o
ranlib .libs/libnb_kernel_ia32_sse.a
creating libnb_kernel_ia32_sse.la
(cd .libs && rm -f libnb_kernel_ia32_sse.la && ln -s ../libnb_kernel_ia32_sse.la libnb_kernel_ia32_sse.la)
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
Making all in nb_kernel_ia32_3dnow
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow'
/bin/sh ../../../../libtool    --mode=compile i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel010_ia32_3dnow.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel010_ia32_3dnow.s
 i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel010_ia32_3dnow.s  -fPIC -DPIC -o .libs/nb_kernel010_ia32_3dnow.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow'
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/bin/sh ../../../../libtool    --mode=compile i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel101_ia32_3dnow.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel101_ia32_3dnow.s
mkdir .libs
 i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel101_ia32_3dnow.s  -fPIC -DPIC -o .libs/nb_kernel101_ia32_3dnow.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow'
/bin/sh ../../../../libtool    --mode=compile i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel110_ia32_3dnow.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel110_ia32_3dnow.s
 i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel110_ia32_3dnow.s  -fPIC -DPIC -o .libs/nb_kernel110_ia32_3dnow.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow'
/bin/sh ../../../../libtool    --mode=compile i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel030_ia32_3dnow.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel030_ia32_3dnow.s
 i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel030_ia32_3dnow.s  -fPIC -DPIC -o .libs/nb_kernel030_ia32_3dnow.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow'
/bin/sh ../../../../libtool    --mode=compile i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel112_ia32_3dnow.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel112_ia32_3dnow.s
 i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel112_ia32_3dnow.s  -fPIC -DPIC -o .libs/nb_kernel112_ia32_3dnow.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow'
/bin/sh ../../../../libtool    --mode=compile i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel102_ia32_3dnow.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel102_ia32_3dnow.s
 i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel102_ia32_3dnow.s  -fPIC -DPIC -o .libs/nb_kernel102_ia32_3dnow.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow'
/bin/sh ../../../../libtool    --mode=compile i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel300_ia32_3dnow.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel300_ia32_3dnow.s
 i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel300_ia32_3dnow.s  -fPIC -DPIC -o .libs/nb_kernel300_ia32_3dnow.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow'
/bin/sh ../../../../libtool    --mode=compile i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel100_ia32_3dnow.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel100_ia32_3dnow.s
 i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel100_ia32_3dnow.s  -fPIC -DPIC -o .libs/nb_kernel100_ia32_3dnow.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow'
/bin/sh ../../../../libtool    --mode=compile i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel301_ia32_3dnow.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel301_ia32_3dnow.s
 i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel301_ia32_3dnow.s  -fPIC -DPIC -o .libs/nb_kernel301_ia32_3dnow.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow'
/bin/sh ../../../../libtool    --mode=compile i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel111_ia32_3dnow.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel111_ia32_3dnow.s
 i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel111_ia32_3dnow.s  -fPIC -DPIC -o .libs/nb_kernel111_ia32_3dnow.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow'
/bin/sh ../../../../libtool    --mode=compile i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel310_ia32_3dnow.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel310_ia32_3dnow.s
 i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel310_ia32_3dnow.s  -fPIC -DPIC -o .libs/nb_kernel310_ia32_3dnow.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow'
/bin/sh ../../../../libtool    --mode=compile i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel302_ia32_3dnow.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel302_ia32_3dnow.s
 i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel302_ia32_3dnow.s  -fPIC -DPIC -o .libs/nb_kernel302_ia32_3dnow.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow'
/bin/sh ../../../../libtool    --mode=compile i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel311_ia32_3dnow.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel311_ia32_3dnow.s
 i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel311_ia32_3dnow.s  -fPIC -DPIC -o .libs/nb_kernel311_ia32_3dnow.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow'
/bin/sh ../../../../libtool    --mode=compile i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel312_ia32_3dnow.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel312_ia32_3dnow.s
 i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel312_ia32_3dnow.s  -fPIC -DPIC -o .libs/nb_kernel312_ia32_3dnow.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow'
/bin/sh ../../../../libtool    --mode=compile i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel330_ia32_3dnow.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel330_ia32_3dnow.s
 i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel330_ia32_3dnow.s  -fPIC -DPIC -o .libs/nb_kernel330_ia32_3dnow.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow'
/bin/sh ../../../../libtool    --mode=compile i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel332_ia32_3dnow.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel332_ia32_3dnow.s
 i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel332_ia32_3dnow.s  -fPIC -DPIC -o .libs/nb_kernel332_ia32_3dnow.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow'
/bin/sh ../../../../libtool    --mode=compile i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel331_ia32_3dnow.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel331_ia32_3dnow.s
 i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel331_ia32_3dnow.s  -fPIC -DPIC -o .libs/nb_kernel331_ia32_3dnow.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow'
/bin/sh ../../../../libtool    --mode=compile i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel_ia32_3dnow_test_asm.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel_ia32_3dnow_test_asm.s
 i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel_ia32_3dnow_test_asm.s  -fPIC -DPIC -o .libs/nb_kernel_ia32_3dnow_test_asm.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow'
/bin/sh ../../../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_3dnow -I../../../../src  -I../../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel_ia32_3dnow.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel_ia32_3dnow.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_3dnow -I../../../../src -I../../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel_ia32_3dnow.c  -fPIC -DPIC -o .libs/nb_kernel_ia32_3dnow.o
../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel_ia32_3dnow.c: In function 'nb_kernel_ia32_3dnow_test':
../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel_ia32_3dnow.c:174:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
     if(log)
     ^~
../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel_ia32_3dnow.c:177:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
  nb_kernel_ia32_3dnow_present = TRUE;
  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow'
/bin/sh ../../../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o libnb_kernel_ia32_3dnow.la  nb_kernel010_ia32_3dnow.lo nb_kernel030_ia32_3dnow.lo nb_kernel100_ia32_3dnow.lo nb_kernel101_ia32_3dnow.lo nb_kernel102_ia32_3dnow.lo nb_kernel110_ia32_3dnow.lo nb_kernel111_ia32_3dnow.lo nb_kernel112_ia32_3dnow.lo nb_kernel300_ia32_3dnow.lo nb_kernel301_ia32_3dnow.lo nb_kernel302_ia32_3dnow.lo nb_kernel310_ia32_3dnow.lo nb_kernel311_ia32_3dnow.lo nb_kernel312_ia32_3dnow.lo nb_kernel330_ia32_3dnow.lo nb_kernel331_ia32_3dnow.lo nb_kernel332_ia32_3dnow.lo nb_kernel_ia32_3dnow_test_asm.lo nb_kernel_ia32_3dnow.lo  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
ar cru .libs/libnb_kernel_ia32_3dnow.a .libs/nb_kernel010_ia32_3dnow.o .libs/nb_kernel030_ia32_3dnow.o .libs/nb_kernel100_ia32_3dnow.o .libs/nb_kernel101_ia32_3dnow.o .libs/nb_kernel102_ia32_3dnow.o .libs/nb_kernel110_ia32_3dnow.o .libs/nb_kernel111_ia32_3dnow.o .libs/nb_kernel112_ia32_3dnow.o .libs/nb_kernel300_ia32_3dnow.o .libs/nb_kernel301_ia32_3dnow.o .libs/nb_kernel302_ia32_3dnow.o .libs/nb_kernel310_ia32_3dnow.o .libs/nb_kernel311_ia32_3dnow.o .libs/nb_kernel312_ia32_3dnow.o .libs/nb_kernel330_ia32_3dnow.o .libs/nb_kernel331_ia32_3dnow.o .libs/nb_kernel332_ia32_3dnow.o .libs/nb_kernel_ia32_3dnow_test_asm.o .libs/nb_kernel_ia32_3dnow.o
ranlib .libs/libnb_kernel_ia32_3dnow.a
creating libnb_kernel_ia32_3dnow.la
(cd .libs && rm -f libnb_kernel_ia32_3dnow.la && ln -s ../libnb_kernel_ia32_3dnow.la libnb_kernel_ia32_3dnow.la)
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow'
Making all in nb_kernel
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb_common.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb_common.c
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb.c
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb_innerloop.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb_innerloop.c
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb_outerloop.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb_outerloop.c
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb_interactions.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb_interactions.c
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb_declarations.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb_declarations.c
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb_metacode.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb_metacode.c
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -o mknb mknb.o mknb_metacode.o mknb_common.o mknb_declarations.o mknb_outerloop.o mknb_innerloop.o mknb_interactions.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
rm -f kernel-stamp
./mknb  -software_invsqrt   -fortran
>>> Gromacs nonbonded kernel generator (-h for help)
>>> Generating single precision functions in Fortran77.
>>> Using Gromacs software version of 1/sqrt(x).

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make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make  all-am
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel101_f.lo nb_kernel101_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel101_f.f  -fPIC -o .libs/nb_kernel101_f.o
nb_kernel101_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:278:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:265:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:274:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:261:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:258:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:276:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:275:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:273:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:264:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:279:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:277:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:268:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:271:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:267:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:269:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:272:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:270:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:282:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel020_f.lo nb_kernel020_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel020_f.f  -fPIC -o .libs/nb_kernel020_f.o
nb_kernel020_f.f:36:38:

      &                          charge,
                                      1
Warning: Unused dummy argument 'charge' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:37:37:

      &                          facel,
                                     1
Warning: Unused dummy argument 'facel' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:40:34:

      &                          Vc,
                                  1
Warning: Unused dummy argument 'vc' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:196:38:

      &                          charge,
                                      1
Warning: Unused dummy argument 'charge' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:212:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:199:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:208:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:197:37:

      &                          facel,
                                     1
Warning: Unused dummy argument 'facel' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:195:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:192:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:210:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:209:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:207:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:198:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:213:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:211:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:205:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:200:34:

      &                          Vc,
                                  1
Warning: Unused dummy argument 'vc' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:206:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:216:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel102_f.lo nb_kernel102_f.f
mkdir .libs
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel102_f.f  -fPIC -o .libs/nb_kernel102_f.o
nb_kernel102_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:444:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:431:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:440:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:427:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:424:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:442:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:441:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:439:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:430:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:445:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:443:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:434:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:437:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:433:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:435:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:438:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:436:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:448:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel110_f.lo nb_kernel110_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel110_f.f  -fPIC -o .libs/nb_kernel110_f.o
nb_kernel110_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:218:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:205:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:214:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:201:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:198:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:216:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:215:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:213:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:204:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:219:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:217:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:211:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:212:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:222:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src  -I../../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel.lo ../../../../../src/gmxlib/nonbonded/nb_kernel/nb_kernel.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -I../../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel/nb_kernel.c  -fPIC -DPIC -o .libs/nb_kernel.o
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel112_f.lo nb_kernel112_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel112_f.f  -fPIC -o .libs/nb_kernel112_f.o
nb_kernel112_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:458:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:445:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:454:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:441:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:438:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:456:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:455:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:453:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:444:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:459:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:457:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:451:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:452:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:462:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel111_f.lo nb_kernel111_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel111_f.f  -fPIC -o .libs/nb_kernel111_f.o
nb_kernel111_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:294:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:281:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:290:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:277:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:274:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:292:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:291:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:289:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:280:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:295:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:293:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:287:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:288:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:298:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel010_f.lo nb_kernel010_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel010_f.f  -fPIC -o .libs/nb_kernel010_f.o
nb_kernel010_f.f:36:38:

      &                          charge,
                                      1
Warning: Unused dummy argument 'charge' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:37:37:

      &                          facel,
                                     1
Warning: Unused dummy argument 'facel' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:40:34:

      &                          Vc,
                                  1
Warning: Unused dummy argument 'vc' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:169:38:

      &                          charge,
                                      1
Warning: Unused dummy argument 'charge' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:185:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:172:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:181:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:170:37:

      &                          facel,
                                     1
Warning: Unused dummy argument 'facel' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:168:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:165:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:183:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:182:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:180:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:171:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:186:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:184:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:178:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:173:34:

      &                          Vc,
                                  1
Warning: Unused dummy argument 'vc' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:179:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:189:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel100_f.lo nb_kernel100_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel100_f.f  -fPIC -o .libs/nb_kernel100_f.o
nb_kernel100_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:202:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:189:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:198:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:185:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:182:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:200:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:199:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:197:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:188:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:203:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:201:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:192:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:195:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:191:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:193:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:196:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:194:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:206:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel114_f.lo nb_kernel114_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel114_f.f  -fPIC -o .libs/nb_kernel114_f.o
nb_kernel114_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:488:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:475:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:484:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:471:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:468:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:486:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:485:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:483:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:474:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:489:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:487:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:481:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:482:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:492:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel030_f.lo nb_kernel030_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel030_f.f  -fPIC -o .libs/nb_kernel030_f.o
nb_kernel030_f.f:144:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel030_f.f:320:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel030_f.f:36:38:

      &                          charge,
                                      1
Warning: Unused dummy argument 'charge' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:37:37:

      &                          facel,
                                     1
Warning: Unused dummy argument 'facel' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:40:34:

      &                          Vc,
                                  1
Warning: Unused dummy argument 'vc' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:218:38:

      &                          charge,
                                      1
Warning: Unused dummy argument 'charge' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:234:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:221:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:230:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:219:37:

      &                          facel,
                                     1
Warning: Unused dummy argument 'facel' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:217:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:214:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:232:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:231:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:229:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:220:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:235:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:233:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:222:34:

      &                          Vc,
                                  1
Warning: Unused dummy argument 'vc' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:238:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel120_f.lo nb_kernel120_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel120_f.f  -fPIC -o .libs/nb_kernel120_f.o
nb_kernel120_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:220:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:207:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:216:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:203:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:200:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:218:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:217:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:215:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:206:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:221:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:219:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:213:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:214:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:224:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel121_f.lo nb_kernel121_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel121_f.f  -fPIC -o .libs/nb_kernel121_f.o
nb_kernel121_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:296:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:283:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:292:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:279:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:276:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:294:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:293:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:291:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:282:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:297:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:295:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:289:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:290:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:300:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel103_f.lo nb_kernel103_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel103_f.f  -fPIC -o .libs/nb_kernel103_f.o
nb_kernel103_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:278:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:265:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:274:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:261:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:258:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:276:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:275:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:273:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:264:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:279:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:277:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:268:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:271:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:267:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:269:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:272:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:270:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:282:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel132_f.lo nb_kernel132_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel132_f.f  -fPIC -o .libs/nb_kernel132_f.o
nb_kernel132_f.f:275:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel132_f.f:694:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel132_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:485:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:472:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:481:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:468:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:465:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:483:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:482:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:480:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:471:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:486:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:484:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:489:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel123_f.lo nb_kernel123_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel123_f.f  -fPIC -o .libs/nb_kernel123_f.o
nb_kernel123_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:329:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:316:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:325:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:312:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:309:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:327:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:326:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:324:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:315:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:330:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:328:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:322:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:323:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:333:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel133_f.lo nb_kernel133_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel133_f.f  -fPIC -o .libs/nb_kernel133_f.o
nb_kernel133_f.f:210:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel133_f.f:494:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel133_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:352:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:339:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:348:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:335:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:332:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:350:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:349:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:347:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:338:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:353:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:351:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:356:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel124_f.lo nb_kernel124_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel124_f.f  -fPIC -o .libs/nb_kernel124_f.o
nb_kernel124_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:497:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:484:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:493:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:480:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:477:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:495:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:494:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:492:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:483:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:498:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:496:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:490:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:491:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:501:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel200_f.lo nb_kernel200_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel200_f.f  -fPIC -o .libs/nb_kernel200_f.o
nb_kernel200_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:204:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:200:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:187:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:184:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:202:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:201:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:199:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:205:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:203:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:194:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:197:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:193:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:195:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:198:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:196:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:208:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel134_f.lo nb_kernel134_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel134_f.f  -fPIC -o .libs/nb_kernel134_f.o
nb_kernel134_f.f:294:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel134_f.f:746:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel134_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:520:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:507:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:516:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:503:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:500:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:518:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:517:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:515:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:506:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:521:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:519:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:524:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel113_f.lo nb_kernel113_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel113_f.f  -fPIC -o .libs/nb_kernel113_f.o
nb_kernel113_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:320:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:307:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:316:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:303:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:300:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:318:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:317:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:315:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:306:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:321:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:319:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:313:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:314:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:324:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel201_f.lo nb_kernel201_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel201_f.f  -fPIC -o .libs/nb_kernel201_f.o
nb_kernel201_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:282:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:278:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:265:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:262:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:280:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:279:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:277:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:283:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:281:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:272:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:275:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:271:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:273:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:276:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:274:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:286:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel130_f.lo nb_kernel130_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel130_f.f  -fPIC -o .libs/nb_kernel130_f.o
nb_kernel130_f.f:153:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel130_f.f:338:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel130_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:245:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:232:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:241:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:228:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:225:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:243:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:242:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:240:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:231:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:246:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:244:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:249:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel202_f.lo nb_kernel202_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel202_f.f  -fPIC -o .libs/nb_kernel202_f.o
nb_kernel202_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:454:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:450:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:437:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:434:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:452:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:451:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:449:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:455:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:453:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:444:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:447:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:443:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:445:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:448:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:446:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:458:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel104_f.lo nb_kernel104_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel104_f.f  -fPIC -o .libs/nb_kernel104_f.o
nb_kernel104_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:444:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:431:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:440:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:427:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:424:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:442:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:441:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:439:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:430:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:445:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:443:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:434:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:437:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:433:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:435:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:438:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:436:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:448:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel210_f.lo nb_kernel210_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel210_f.f  -fPIC -o .libs/nb_kernel210_f.o
nb_kernel210_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:221:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:217:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:204:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:201:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:219:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:218:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:216:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:222:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:220:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:214:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:215:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:225:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel203_f.lo nb_kernel203_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel203_f.f  -fPIC -o .libs/nb_kernel203_f.o
nb_kernel203_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:282:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:278:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:265:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:262:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:280:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:279:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:277:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:283:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:281:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:272:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:275:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:271:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:273:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:276:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:274:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:286:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel131_f.lo nb_kernel131_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel131_f.f  -fPIC -o .libs/nb_kernel131_f.o
nb_kernel131_f.f:196:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel131_f.f:451:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel131_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:321:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:308:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:317:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:304:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:301:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:319:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:318:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:316:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:307:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:322:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:320:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:325:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel211_f.lo nb_kernel211_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel211_f.f  -fPIC -o .libs/nb_kernel211_f.o
nb_kernel211_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:299:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:295:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:282:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:279:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:297:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:296:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:294:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:300:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:298:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:292:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:293:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:303:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel213_f.lo nb_kernel213_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel213_f.f  -fPIC -o .libs/nb_kernel213_f.o
nb_kernel213_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:324:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:320:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:307:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:304:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:322:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:321:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:319:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:325:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:323:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:317:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:318:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:328:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel220_f.lo nb_kernel220_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel220_f.f  -fPIC -o .libs/nb_kernel220_f.o
nb_kernel220_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:223:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:219:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:206:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:203:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:221:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:220:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:218:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:224:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:222:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:216:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:217:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:227:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel204_f.lo nb_kernel204_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel204_f.f  -fPIC -o .libs/nb_kernel204_f.o
nb_kernel204_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:454:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:450:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:437:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:434:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:452:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:451:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:449:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:455:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:453:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:444:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:447:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:443:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:445:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:448:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:446:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:458:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel221_f.lo nb_kernel221_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel221_f.f  -fPIC -o .libs/nb_kernel221_f.o
nb_kernel221_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:301:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:297:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:284:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:281:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:299:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:298:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:296:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:302:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:300:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:294:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:295:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:305:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel212_f.lo nb_kernel212_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel212_f.f  -fPIC -o .libs/nb_kernel212_f.o
nb_kernel212_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:469:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:465:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:452:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:449:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:467:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:466:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:464:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:470:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:468:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:462:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:463:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:473:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel230_f.lo nb_kernel230_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel230_f.f  -fPIC -o .libs/nb_kernel230_f.o
nb_kernel230_f.f:155:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel230_f.f:342:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel230_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:247:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:243:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:230:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:227:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:245:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:244:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:242:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:248:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:246:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:251:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel122_f.lo nb_kernel122_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel122_f.f  -fPIC -o .libs/nb_kernel122_f.o
nb_kernel122_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:460:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:447:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:456:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:443:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:440:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:458:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:457:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:455:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:446:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:461:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:459:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:453:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:454:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:464:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel222_f.lo nb_kernel222_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel222_f.f  -fPIC -o .libs/nb_kernel222_f.o
nb_kernel222_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:471:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:467:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:454:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:451:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:469:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:468:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:466:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:472:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:470:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:464:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:465:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:475:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel300_f.lo nb_kernel300_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel300_f.f  -fPIC -o .libs/nb_kernel300_f.o
nb_kernel300_f.f:139:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel300_f.f:300:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel300_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:219:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:206:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:215:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:202:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:199:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:217:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:216:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:214:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:205:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:220:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:218:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:209:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:208:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:210:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:211:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:223:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel233_f.lo nb_kernel233_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel233_f.f  -fPIC -o .libs/nb_kernel233_f.o
nb_kernel233_f.f:211:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel233_f.f:499:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel233_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:356:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:352:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:339:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:336:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:354:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:353:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:351:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:357:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:355:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:360:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel234_f.lo nb_kernel234_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel234_f.f  -fPIC -o .libs/nb_kernel234_f.o
nb_kernel234_f.f:295:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel234_f.f:757:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel234_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:530:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:526:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:513:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:510:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:528:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:527:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:525:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:531:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:529:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:534:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel223_f.lo nb_kernel223_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel223_f.f  -fPIC -o .libs/nb_kernel223_f.o
nb_kernel223_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:333:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:329:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:316:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:313:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:331:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:330:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:328:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:334:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:332:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:326:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:327:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:337:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel301_f.lo nb_kernel301_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel301_f.f  -fPIC -o .libs/nb_kernel301_f.o
nb_kernel301_f.f:182:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel301_f.f:209:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel301_f.f:235:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel301_f.f:439:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel301_f.f:454:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel301_f.f:468:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel301_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:321:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:308:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:317:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:304:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:301:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:319:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:318:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:316:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:307:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:322:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:320:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:311:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:310:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:312:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:313:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:325:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel231_f.lo nb_kernel231_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel231_f.f  -fPIC -o .libs/nb_kernel231_f.o
nb_kernel231_f.f:198:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel231_f.f:457:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel231_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:325:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:321:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:308:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:305:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:323:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:322:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:320:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:326:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:324:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:329:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel214_f.lo nb_kernel214_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel214_f.f  -fPIC -o .libs/nb_kernel214_f.o
nb_kernel214_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:498:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:494:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:481:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:478:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:496:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:495:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:493:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:499:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:497:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:491:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:492:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:502:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel303_f.lo nb_kernel303_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel303_f.f  -fPIC -o .libs/nb_kernel303_f.o
nb_kernel303_f.f:182:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel303_f.f:208:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel303_f.f:235:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel303_f.f:439:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel303_f.f:453:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel303_f.f:468:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel303_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:321:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:308:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:317:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:304:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:301:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:319:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:318:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:316:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:307:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:322:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:320:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:311:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:310:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:312:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:313:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:325:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel310_f.lo nb_kernel310_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel310_f.f  -fPIC -o .libs/nb_kernel310_f.o
nb_kernel310_f.f:152:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel310_f.f:332:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel310_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:238:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:225:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:234:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:221:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:218:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:236:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:235:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:233:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:224:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:239:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:237:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:242:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel302_f.lo nb_kernel302_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel302_f.f  -fPIC -o .libs/nb_kernel302_f.o
nb_kernel302_f.f:263:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:290:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:317:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:344:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:371:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:398:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:425:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:452:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:479:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:764:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:779:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:794:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:809:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:824:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:839:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:854:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:869:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:884:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:565:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:552:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:561:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:548:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:545:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:563:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:562:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:560:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:551:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:566:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:564:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:555:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:554:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:556:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:557:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:569:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel311_f.lo nb_kernel311_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel311_f.f  -fPIC -o .libs/nb_kernel311_f.o
nb_kernel311_f.f:195:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel311_f.f:227:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel311_f.f:253:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel311_f.f:471:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel311_f.f:490:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel311_f.f:504:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel311_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:340:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:327:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:336:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:323:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:320:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:338:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:337:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:335:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:326:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:341:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:339:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:344:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel224_f.lo nb_kernel224_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel224_f.f  -fPIC -o .libs/nb_kernel224_f.o
nb_kernel224_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:507:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:503:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:490:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:487:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:505:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:504:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:502:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:508:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:506:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:500:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:501:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:511:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel232_f.lo nb_kernel232_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel232_f.f  -fPIC -o .libs/nb_kernel232_f.o
nb_kernel232_f.f:277:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel232_f.f:706:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel232_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:495:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:491:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:478:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:475:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:493:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:492:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:490:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:496:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:494:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:499:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel313_f.lo nb_kernel313_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel313_f.f  -fPIC -o .libs/nb_kernel313_f.o
nb_kernel313_f.f:221:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel313_f.f:247:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel313_f.f:274:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel313_f.f:508:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel313_f.f:522:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel313_f.f:537:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel313_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:364:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:351:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:360:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:347:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:344:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:362:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:361:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:359:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:350:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:365:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:363:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:368:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel320_f.lo nb_kernel320_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel320_f.f  -fPIC -o .libs/nb_kernel320_f.o
nb_kernel320_f.f:153:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel320_f.f:335:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel320_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:240:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:227:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:236:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:223:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:220:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:238:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:237:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:235:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:226:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:241:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:239:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:244:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel321_f.lo nb_kernel321_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel321_f.f  -fPIC -o .libs/nb_kernel321_f.o
nb_kernel321_f.f:196:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel321_f.f:229:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel321_f.f:255:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel321_f.f:474:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel321_f.f:494:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel321_f.f:508:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel321_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:342:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:329:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:338:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:325:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:322:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:340:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:339:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:337:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:328:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:343:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:341:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:346:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel314_f.lo nb_kernel314_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel314_f.f  -fPIC -o .libs/nb_kernel314_f.o
nb_kernel314_f.f:304:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:331:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:358:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:385:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:412:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:439:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:466:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:493:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:520:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:837:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:852:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:867:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:882:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:897:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:912:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:927:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:942:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:957:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:610:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:597:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:606:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:593:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:590:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:608:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:607:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:605:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:596:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:611:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:609:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:614:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel323_f.lo nb_kernel323_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel323_f.f  -fPIC -o .libs/nb_kernel323_f.o
nb_kernel323_f.f:230:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel323_f.f:256:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel323_f.f:283:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel323_f.f:526:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel323_f.f:540:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel323_f.f:555:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel323_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:373:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:360:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:369:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:356:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:353:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:371:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:370:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:368:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:359:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:374:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:372:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:377:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel330_f.lo nb_kernel330_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel330_f.f  -fPIC -o .libs/nb_kernel330_f.o
nb_kernel330_f.f:150:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel330_f.f:343:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel330_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:252:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:239:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:248:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:235:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:232:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:250:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:249:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:247:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:238:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:253:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:251:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:256:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel331_f.lo nb_kernel331_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel331_f.f  -fPIC -o .libs/nb_kernel331_f.o
nb_kernel331_f.f:193:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel331_f.f:241:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel331_f.f:267:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel331_f.f:482:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel331_f.f:514:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel331_f.f:528:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel331_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:354:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:341:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:350:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:337:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:334:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:352:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:351:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:349:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:340:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:355:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:353:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:358:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel322_f.lo nb_kernel322_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel322_f.f  -fPIC -o .libs/nb_kernel322_f.o
nb_kernel322_f.f:275:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:308:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:335:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:362:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:389:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:416:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:443:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:470:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:497:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:795:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:815:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:830:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:845:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:860:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:875:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:890:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:905:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:920:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:584:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:571:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:580:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:567:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:564:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:582:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:581:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:579:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:570:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:585:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:583:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:588:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel324_f.lo nb_kernel324_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel324_f.f  -fPIC -o .libs/nb_kernel324_f.o
nb_kernel324_f.f:313:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:340:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:367:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:394:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:421:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:448:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:475:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:502:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:529:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:855:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:870:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:885:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:900:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:915:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:930:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:945:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:960:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:975:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:619:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:606:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:615:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:602:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:599:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:617:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:616:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:614:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:605:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:620:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:618:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:623:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel332_f.lo nb_kernel332_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel332_f.f  -fPIC -o .libs/nb_kernel332_f.o
nb_kernel332_f.f:272:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:320:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:347:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:374:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:401:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:428:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:455:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:482:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:509:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:803:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:835:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:850:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:865:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:880:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:895:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:910:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:925:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:940:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:596:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:583:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:592:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:579:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:576:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:594:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:593:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:591:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:582:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:597:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:595:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:600:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel304_f.lo nb_kernel304_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel304_f.f  -fPIC -o .libs/nb_kernel304_f.o
nb_kernel304_f.f:263:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:290:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:317:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:344:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:371:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:398:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:425:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:452:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:479:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:764:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:779:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:794:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:809:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:824:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:839:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:854:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:869:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:884:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:565:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:552:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:561:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:548:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:545:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:563:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:562:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:560:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:551:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:566:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:564:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:555:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:554:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:556:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:557:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:569:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel312_f.lo nb_kernel312_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel312_f.f  -fPIC -o .libs/nb_kernel312_f.o
nb_kernel312_f.f:274:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:306:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:333:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:360:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:387:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:414:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:441:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:468:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:495:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:792:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:811:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:826:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:841:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:856:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:871:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:886:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:901:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:916:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:582:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:569:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:578:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:565:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:562:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:580:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:579:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:577:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:568:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:583:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:581:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:586:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel420_f.lo nb_kernel420_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel420_f.f  -fPIC -o .libs/nb_kernel420_f.o
nb_kernel420_f.f:161:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel420_f.f:352:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel420_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:252:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:239:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:248:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:235:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:232:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:238:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:253:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:251:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:245:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:246:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:256:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel333_f.lo nb_kernel333_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel333_f.f  -fPIC -o .libs/nb_kernel333_f.o
nb_kernel333_f.f:210:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel333_f.f:249:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel333_f.f:275:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel333_f.f:302:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel333_f.f:534:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel333_f.f:559:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel333_f.f:573:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel333_f.f:588:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel333_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:392:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:379:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:388:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:375:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:372:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:390:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:389:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:387:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:378:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:393:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:391:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:396:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel410_f.lo nb_kernel410_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel410_f.f  -fPIC -o .libs/nb_kernel410_f.o
nb_kernel410_f.f:160:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel410_f.f:349:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel410_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:250:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:237:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:246:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:233:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:230:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:236:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:251:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:249:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:243:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:244:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:254:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src  -I../../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel_f77sync.lo ../../../../../src/gmxlib/nonbonded/nb_kernel/nb_kernel_f77sync.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -I../../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel/nb_kernel_f77sync.c  -fPIC -DPIC -o .libs/nb_kernel_f77sync.o
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel430_f.lo nb_kernel430_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel430_f.f  -fPIC -o .libs/nb_kernel430_f.o
nb_kernel430_f.f:158:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel430_f.f:177:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel430_f.f:365:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel430_f.f:379:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel430_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:269:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:256:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:265:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:252:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:249:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:255:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:270:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:268:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:273:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel400_f.lo nb_kernel400_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel400_f.f  -fPIC -o .libs/nb_kernel400_f.o
nb_kernel400_f.f:147:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel400_f.f:317:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel400_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:231:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:218:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:227:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:214:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:211:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:217:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:232:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:230:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:221:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:224:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:220:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:222:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:225:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:223:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:235:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel334_f.lo nb_kernel334_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel334_f.f  -fPIC -o .libs/nb_kernel334_f.o
nb_kernel334_f.f:294:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:332:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:359:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:386:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:413:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:440:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:467:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:494:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:521:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:548:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:864:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:888:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:903:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:918:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:933:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:948:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:963:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:978:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:993:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:1008:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:638:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:625:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:634:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:621:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:618:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:636:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:635:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:633:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:624:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:639:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:637:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:642:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o libnb_kernel.la  nb_kernel.lo nb_kernel010_f.lo nb_kernel020_f.lo nb_kernel030_f.lo nb_kernel100_f.lo nb_kernel101_f.lo nb_kernel102_f.lo nb_kernel103_f.lo nb_kernel104_f.lo nb_kernel110_f.lo nb_kernel111_f.lo nb_kernel112_f.lo nb_kernel113_f.lo nb_kernel114_f.lo nb_kernel120_f.lo nb_kernel121_f.lo nb_kernel122_f.lo nb_kernel123_f.lo nb_kernel124_f.lo nb_kernel130_f.lo nb_kernel131_f.lo nb_kernel132_f.lo nb_kernel133_f.lo nb_kernel134_f.lo nb_kernel200_f.lo nb_kernel201_f.lo nb_kernel202_f.lo nb_kernel203_f.lo nb_kernel204_f.lo nb_kernel210_f.lo nb_kernel211_f.lo nb_kernel212_f.lo nb_kernel213_f.lo nb_kernel214_f.lo nb_kernel220_f.lo nb_kernel221_f.lo nb_kernel222_f.lo nb_kernel223_f.lo nb_kernel224_f.lo nb_kernel230_f.lo nb_kernel231_f.lo nb_kernel232_f.lo nb_kernel233_f.lo nb_kernel234_f.lo nb_kernel300_f.lo nb_kernel301_f.lo nb_kernel302_f.lo nb_kernel303_f.lo nb_kernel304_f.lo nb_kernel310_f.lo nb_kernel311_f.lo nb_kernel312_f.lo nb_kernel313_f.lo nb_kernel314_f.lo nb_kernel320_f.lo nb_kernel321_f.lo nb_kernel322_f.lo nb_kernel323_f.lo nb_kernel324_f.lo nb_kernel330_f.lo nb_kernel331_f.lo nb_kernel332_f.lo nb_kernel333_f.lo nb_kernel334_f.lo nb_kernel400_f.lo nb_kernel410_f.lo nb_kernel420_f.lo nb_kernel430_f.lo  nb_kernel_f77sync.lo -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
ar cru .libs/libnb_kernel.a .libs/nb_kernel.o .libs/nb_kernel010_f.o .libs/nb_kernel020_f.o .libs/nb_kernel030_f.o .libs/nb_kernel100_f.o .libs/nb_kernel101_f.o .libs/nb_kernel102_f.o .libs/nb_kernel103_f.o .libs/nb_kernel104_f.o .libs/nb_kernel110_f.o .libs/nb_kernel111_f.o .libs/nb_kernel112_f.o .libs/nb_kernel113_f.o .libs/nb_kernel114_f.o .libs/nb_kernel120_f.o .libs/nb_kernel121_f.o .libs/nb_kernel122_f.o .libs/nb_kernel123_f.o .libs/nb_kernel124_f.o .libs/nb_kernel130_f.o .libs/nb_kernel131_f.o .libs/nb_kernel132_f.o .libs/nb_kernel133_f.o .libs/nb_kernel134_f.o .libs/nb_kernel200_f.o .libs/nb_kernel201_f.o .libs/nb_kernel202_f.o .libs/nb_kernel203_f.o .libs/nb_kernel204_f.o .libs/nb_kernel210_f.o .libs/nb_kernel211_f.o .libs/nb_kernel212_f.o .libs/nb_kernel213_f.o .libs/nb_kernel214_f.o .libs/nb_kernel220_f.o .libs/nb_kernel221_f.o .libs/nb_kernel222_f.o .libs/nb_kernel223_f.o .libs/nb_kernel224_f.o .libs/nb_kernel230_f.o .libs/nb_kernel231_f.o .libs/nb_kernel232_f.o .libs/nb_kernel233_f.o .libs/nb_kernel234_f.o .libs/nb_kernel300_f.o .libs/nb_kernel301_f.o .libs/nb_kernel302_f.o .libs/nb_kernel303_f.o .libs/nb_kernel304_f.o .libs/nb_kernel310_f.o .libs/nb_kernel311_f.o .libs/nb_kernel312_f.o .libs/nb_kernel313_f.o .libs/nb_kernel314_f.o .libs/nb_kernel320_f.o .libs/nb_kernel321_f.o .libs/nb_kernel322_f.o .libs/nb_kernel323_f.o .libs/nb_kernel324_f.o .libs/nb_kernel330_f.o .libs/nb_kernel331_f.o .libs/nb_kernel332_f.o .libs/nb_kernel333_f.o .libs/nb_kernel334_f.o .libs/nb_kernel400_f.o .libs/nb_kernel410_f.o .libs/nb_kernel420_f.o .libs/nb_kernel430_f.o .libs/nb_kernel_f77sync.o
ranlib .libs/libnb_kernel.a
creating libnb_kernel.la
(cd .libs && rm -f libnb_kernel.la && ln -s ../libnb_kernel.la libnb_kernel.la)
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded'
/bin/sh ../../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/nonbonded -I../../../src  -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_generic.lo ../../../../src/gmxlib/nonbonded/nb_generic.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/nonbonded -I../../../src -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/nonbonded/nb_generic.c  -fPIC -DPIC -o .libs/nb_generic.o
../../../../src/gmxlib/nonbonded/nb_generic.c: In function 'gmx_nb_generic_kernel':
../../../../src/gmxlib/nonbonded/nb_generic.c:82:16: warning: unused variable 'shift' [-Wunused-variable]
  int *         shift;
                ^~~~~
../../../../src/gmxlib/nonbonded/nb_generic.c:62:25: warning: unused variable 'gbtabscale' [-Wunused-variable]
     real          facel,gbtabscale;
                         ^~~~~~~~~~
../../../../src/gmxlib/nonbonded/nb_generic.c:61:19: warning: unused variable 'nri' [-Wunused-variable]
     int           nri,ntype,table_nelements,icoul,ivdw;
                   ^~~
In file included from ../../../../src/gmxlib/nonbonded/nb_generic.c:43:
At top level:
../../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../../include/vec.h:121,
                 from ../../../../src/gmxlib/nonbonded/nb_generic.c:43:
../../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded'
/bin/sh ../../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/nonbonded -I../../../src  -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_free_energy.lo ../../../../src/gmxlib/nonbonded/nb_free_energy.c
mkdir .libs
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/nonbonded -I../../../src -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/nonbonded/nb_free_energy.c  -fPIC -DPIC -o .libs/nb_free_energy.o
../../../../src/gmxlib/nonbonded/nb_free_energy.c: In function 'gmx_nb_free_energy_kernel':
../../../../src/gmxlib/nonbonded/nb_free_energy.c:100:25: warning: unused variable 'H' [-Wunused-variable]
     real          Y,F,G,H,Fp,Geps,Heps2,eps,eps2,VV,FF;
                         ^
../../../../src/gmxlib/nonbonded/nb_free_energy.c:100:23: warning: unused variable 'G' [-Wunused-variable]
     real          Y,F,G,H,Fp,Geps,Heps2,eps,eps2,VV,FF;
                       ^
../../../../src/gmxlib/nonbonded/nb_free_energy.c:89:19: warning: unused variable 'rinvsix' [-Wunused-variable]
     real          rinvsix;
                   ^~~~~~~
../../../../src/gmxlib/nonbonded/nb_free_energy.c:86:27: warning: unused variable 'vcoul' [-Wunused-variable]
     real          qqA,qqB,vcoul,vctot,krsq;
                           ^~~~~
In file included from ../../../../src/gmxlib/nonbonded/nb_free_energy.c:42:
At top level:
../../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../../include/vec.h:121,
                 from ../../../../src/gmxlib/nonbonded/nb_free_energy.c:42:
../../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded'
/bin/sh ../../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/nonbonded -I../../../src  -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nonbonded.lo ../../../../src/gmxlib/nonbonded/nonbonded.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/nonbonded -I../../../src -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/nonbonded/nonbonded.c  -fPIC -DPIC -o .libs/nonbonded.o
../../../../src/gmxlib/nonbonded/nonbonded.c: In function 'do_nonbonded':
../../../../src/gmxlib/nonbonded/nonbonded.c:283:18: warning: unused variable 'fp' [-Wunused-variable]
  FILE *          fp;
                  ^~
../../../../src/gmxlib/nonbonded/nonbonded.c:281:18: warning: unused variable 'bWater' [-Wunused-variable]
  bool            bWater;
                  ^~~~~~
../../../../src/gmxlib/nonbonded/nonbonded.c:279:43: warning: unused variable 'sz' [-Wunused-variable]
  int             n,n0,n1,i,i0,i1,nrnb_ind,sz;
                                           ^~
../../../../src/gmxlib/nonbonded/nonbonded.c: In function 'do_listed_vdw_q':
../../../../src/gmxlib/nonbonded/nonbonded.c:547:15: warning: unused variable 'tmplist' [-Wunused-variable]
     t_nblist  tmplist;
               ^~~~~~~
../../../../src/gmxlib/nonbonded/nonbonded.c:538:25: warning: unused variable 'i2' [-Wunused-variable]
     int       i0=0,i1=1,i2=2;
                         ^~
In file included from ../../../../src/gmxlib/nonbonded/nonbonded.c:53:
At top level:
../../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../../src/gmxlib/nonbonded/nonbonded.c:50:
../../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../../include/vec.h:121,
                 from ../../../../src/gmxlib/nonbonded/nonbonded.c:50:
../../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded'
/bin/sh ../../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o libnonbonded.la  nonbonded.lo nb_free_energy.lo nb_generic.lo nb_kernel_ia32_sse/libnb_kernel_ia32_sse.la                 nb_kernel_ia32_3dnow/libnb_kernel_ia32_3dnow.la                     	 nb_kernel/libnb_kernel.la			 -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
rm -fr .libs/libnonbonded.lax
mkdir .libs/libnonbonded.lax
rm -fr .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a
mkdir .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a
(cd .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a && ar x /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_ia32_sse/.libs/libnb_kernel_ia32_sse.a)
rm -fr .libs/libnonbonded.lax/libnb_kernel_ia32_3dnow.a
mkdir .libs/libnonbonded.lax/libnb_kernel_ia32_3dnow.a
(cd .libs/libnonbonded.lax/libnb_kernel_ia32_3dnow.a && ar x /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/.libs/libnb_kernel_ia32_3dnow.a)
rm -fr .libs/libnonbonded.lax/libnb_kernel.a
mkdir .libs/libnonbonded.lax/libnb_kernel.a
(cd .libs/libnonbonded.lax/libnb_kernel.a && ar x /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel/.libs/libnb_kernel.a)
ar cru .libs/libnonbonded.a .libs/nonbonded.o .libs/nb_free_energy.o .libs/nb_generic.o  .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel_ia32_sse_test_asm.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel430_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel410_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel400_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel334_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel333_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel332_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel331_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel330_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel314_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel313_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel312_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel311_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel310_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel304_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel303_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel302_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel301_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel300_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel234_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel233_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel232_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel231_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel230_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel214_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel213_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel212_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel211_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel210_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel204_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel203_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel202_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel201_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel200_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel134_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel133_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel132_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel131_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel130_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel114_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel113_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel112_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel111_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel110_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel104_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel103_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel102_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel101_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel100_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel030_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel010_ia32_sse.o  .libs/libnonbonded.lax/libnb_kernel_ia32_3dnow.a/nb_kernel_ia32_3dnow.o .libs/libnonbonded.lax/libnb_kernel_ia32_3dnow.a/nb_kernel_ia32_3dnow_test_asm.o .libs/libnonbonded.lax/libnb_kernel_ia32_3dnow.a/nb_kernel332_ia32_3dnow.o .libs/libnonbonded.lax/libnb_kernel_ia32_3dnow.a/nb_kernel331_ia32_3dnow.o .libs/libnonbonded.lax/libnb_kernel_ia32_3dnow.a/nb_kernel330_ia32_3dnow.o .libs/libnonbonded.lax/libnb_kernel_ia32_3dnow.a/nb_kernel312_ia32_3dnow.o .libs/libnonbonded.lax/libnb_kernel_ia32_3dnow.a/nb_kernel311_ia32_3dnow.o .libs/libnonbonded.lax/libnb_kernel_ia32_3dnow.a/nb_kernel310_ia32_3dnow.o .libs/libnonbonded.lax/libnb_kernel_ia32_3dnow.a/nb_kernel302_ia32_3dnow.o .libs/libnonbonded.lax/libnb_kernel_ia32_3dnow.a/nb_kernel301_ia32_3dnow.o .libs/libnonbonded.lax/libnb_kernel_ia32_3dnow.a/nb_kernel300_ia32_3dnow.o .libs/libnonbonded.lax/libnb_kernel_ia32_3dnow.a/nb_kernel112_ia32_3dnow.o .libs/libnonbonded.lax/libnb_kernel_ia32_3dnow.a/nb_kernel111_ia32_3dnow.o .libs/libnonbonded.lax/libnb_kernel_ia32_3dnow.a/nb_kernel110_ia32_3dnow.o .libs/libnonbonded.lax/libnb_kernel_ia32_3dnow.a/nb_kernel102_ia32_3dnow.o .libs/libnonbonded.lax/libnb_kernel_ia32_3dnow.a/nb_kernel101_ia32_3dnow.o .libs/libnonbonded.lax/libnb_kernel_ia32_3dnow.a/nb_kernel100_ia32_3dnow.o .libs/libnonbonded.lax/libnb_kernel_ia32_3dnow.a/nb_kernel030_ia32_3dnow.o .libs/libnonbonded.lax/libnb_kernel_ia32_3dnow.a/nb_kernel010_ia32_3dnow.o  .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel_f77sync.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel430_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel420_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel410_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel400_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel334_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel333_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel332_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel331_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel330_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel324_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel323_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel322_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel321_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel320_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel314_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel313_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel312_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel311_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel310_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel304_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel303_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel302_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel301_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel300_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel234_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel233_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel232_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel231_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel230_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel224_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel223_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel222_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel221_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel220_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel214_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel213_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel212_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel211_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel210_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel204_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel203_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel202_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel201_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel200_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel134_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel133_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel132_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel131_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel130_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel124_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel123_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel122_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel121_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel120_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel114_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel113_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel112_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel111_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel110_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel104_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel103_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel102_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel101_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel100_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel030_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel020_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel010_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel.o 
ranlib .libs/libnonbonded.a
rm -fr .libs/libnonbonded.lax
creating libnonbonded.la
(cd .libs && rm -f libnonbonded.la && ln -s ../libnonbonded.la libnonbonded.la)
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded'
Making all in gmx_blas
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas'
/bin/sh ../../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dasum.lo ../../../../src/gmxlib/gmx_blas/dasum.c
mkdir .libs
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dasum.c  -fPIC -DPIC -o .libs/dasum.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas'
/bin/sh ../../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o drot.lo ../../../../src/gmxlib/gmx_blas/drot.c
mkdir .libs
mkdir: cannot create directory '.libs': File exists
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/drot.c  -fPIC -DPIC -o .libs/drot.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dger.lo ../../../../src/gmxlib/gmx_blas/dger.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dger.c  -fPIC -DPIC -o .libs/dger.o
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 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dswap.c  -fPIC -DPIC -o .libs/dswap.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dgemm.lo ../../../../src/gmxlib/gmx_blas/dgemm.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dgemm.c  -fPIC -DPIC -o .libs/dgemm.o
../../../../src/gmxlib/gmx_blas/dgemm.c: In function 'dgemm_':
../../../../src/gmxlib/gmx_blas/dgemm.c:27:19: warning: variable 'nrowb' set but not used [-Wunused-but-set-variable]
   int nrowa,ncola,nrowb;
                   ^~~~~
../../../../src/gmxlib/gmx_blas/dgemm.c:27:13: warning: variable 'ncola' set but not used [-Wunused-but-set-variable]
   int nrowa,ncola,nrowb;
             ^~~~~
../../../../src/gmxlib/gmx_blas/dgemm.c:27:7: warning: variable 'nrowa' set but not used [-Wunused-but-set-variable]
   int nrowa,ncola,nrowb;
       ^~~~~
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 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dtrmm.c  -fPIC -DPIC -o .libs/dtrmm.o
../../../../src/gmxlib/gmx_blas/dtrmm.c: In function 'dtrmm_':
../../../../src/gmxlib/gmx_blas/dtrmm.c:32:9: warning: variable 'nrowa' set but not used [-Wunused-but-set-variable]
     int nrowa;
         ^~~~~
../../../../src/gmxlib/gmx_blas/dtrmm.c:29:20: warning: variable 'info' set but not used [-Wunused-but-set-variable]
     int i__, j, k, info;
                    ^~~~
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../../../../src/gmxlib/gmx_blas/dtrmv.c: In function 'dtrmv_':
../../../../src/gmxlib/gmx_blas/dtrmv.c:18:29: warning: variable 'info' set but not used [-Wunused-but-set-variable]
     int i__, j, ix, jx, kx, info;
                             ^~~~
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../../../../src/gmxlib/gmx_blas/sgemm.c: In function 'sgemm_':
../../../../src/gmxlib/gmx_blas/sgemm.c:26:19: warning: variable 'nrowb' set but not used [-Wunused-but-set-variable]
   int nrowa,ncola,nrowb;
                   ^~~~~
../../../../src/gmxlib/gmx_blas/sgemm.c:26:13: warning: variable 'ncola' set but not used [-Wunused-but-set-variable]
   int nrowa,ncola,nrowb;
             ^~~~~
../../../../src/gmxlib/gmx_blas/sgemm.c:26:7: warning: variable 'nrowa' set but not used [-Wunused-but-set-variable]
   int nrowa,ncola,nrowb;
       ^~~~~
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/bin/sh ../../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o strmm.lo ../../../../src/gmxlib/gmx_blas/strmm.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/strmm.c  -fPIC -DPIC -o .libs/strmm.o
../../../../src/gmxlib/gmx_blas/strmm.c: In function 'strmm_':
../../../../src/gmxlib/gmx_blas/strmm.c:31:9: warning: variable 'nrowa' set but not used [-Wunused-but-set-variable]
     int nrowa;
         ^~~~~
../../../../src/gmxlib/gmx_blas/strmm.c:28:20: warning: variable 'info' set but not used [-Wunused-but-set-variable]
     int i__, j, k, info;
                    ^~~~
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/bin/sh ../../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o ssyr2k.lo ../../../../src/gmxlib/gmx_blas/ssyr2k.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/ssyr2k.c  -fPIC -DPIC -o .libs/ssyr2k.o
../../../../src/gmxlib/gmx_blas/ssyr2k.c: In function 'ssyr2k_':
../../../../src/gmxlib/gmx_blas/ssyr2k.c:22:7: warning: variable 'nrowa' set but not used [-Wunused-but-set-variable]
   int nrowa;
       ^~~~~
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../../../../src/gmxlib/gmx_blas/strmv.c: In function 'strmv_':
../../../../src/gmxlib/gmx_blas/strmv.c:18:29: warning: variable 'info' set but not used [-Wunused-but-set-variable]
     int i__, j, ix, jx, kx, info;
                             ^~~~
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 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dsyr2k.c  -fPIC -DPIC -o .libs/dsyr2k.o
../../../../src/gmxlib/gmx_blas/dsyr2k.c: In function 'dsyr2k_':
../../../../src/gmxlib/gmx_blas/dsyr2k.c:23:7: warning: variable 'nrowa' set but not used [-Wunused-but-set-variable]
   int nrowa;
       ^~~~~
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ar cru .libs/libblas.a .libs/dasum.o .libs/dcopy.o .libs/dgemm.o .libs/dger.o .libs/drot.o .libs/dswap.o .libs/dsyr2.o .libs/dtrmm.o .libs/dtrsm.o .libs/daxpy.o .libs/ddot.o .libs/dgemv.o .libs/dnrm2.o .libs/dscal.o .libs/dsymv.o .libs/dsyr2k.o .libs/dtrmv.o .libs/idamax.o .libs/sasum.o .libs/scopy.o .libs/sgemm.o .libs/sger.o .libs/srot.o .libs/sswap.o .libs/ssyr2.o .libs/strmm.o .libs/strsm.o .libs/saxpy.o .libs/sdot.o .libs/sgemv.o .libs/snrm2.o .libs/sscal.o .libs/ssymv.o .libs/ssyr2k.o .libs/strmv.o .libs/isamax.o
ranlib .libs/libblas.a
creating libblas.la
(cd .libs && rm -f libblas.la && ln -s ../libblas.la libblas.la)
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Making all in gmx_lapack
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mkdir .libs
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../../../../src/gmxlib/gmx_lapack/dgetf2.c: In function 'dgetf2_':
../../../../src/gmxlib/gmx_lapack/dgetf2.c:17:10: warning: variable 'one' set but not used [-Wunused-but-set-variable]
   double one,minusone;
          ^~~
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../../../../src/gmxlib/gmx_lapack/dlasr.c: In function 'dlasr_':
../../../../src/gmxlib/gmx_lapack/dlasr.c:21:17: warning: variable 'info' set but not used [-Wunused-but-set-variable]
     int i__, j, info;
                 ^~~~
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../../../../src/gmxlib/gmx_lapack/dbdsqr.c: In function 'dbdsqr_':
../../../../src/gmxlib/gmx_lapack/dbdsqr.c:61:12: warning: unused variable 'ftmp' [-Wunused-variable]
     double ftmp;
            ^~~~
../../../../src/gmxlib/gmx_lapack/dbdsqr.c:59:12: warning: variable 'sminlo' set but not used [-Wunused-but-set-variable]
     double sminlo, tolmul;
            ^~~~~~
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../../../../src/gmxlib/gmx_lapack/dorm2r.c: In function 'dorm2r_':
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     int i__, i1, i2, i3, ic, jc, mi, ni, nq;
                                          ^~
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../../../../src/gmxlib/gmx_lapack/dgesdd.c: In function 'dgesdd_':
../../../../src/gmxlib/gmx_lapack/dgesdd.c:40:9: warning: variable 'wntqas' set but not used [-Wunused-but-set-variable]
     int wntqas, lquery;
         ^~~~~~
../../../../src/gmxlib/gmx_lapack/dgesdd.c:38:9: warning: variable 'minwrk' set but not used [-Wunused-but-set-variable]
     int minwrk, ldwrku, maxwrk, ldwkvt;
         ^~~~~~
../../../../src/gmxlib/gmx_lapack/dgesdd.c:35:16: warning: variable 'wntqo' set but not used [-Wunused-but-set-variable]
     int wntqn, wntqo, wntqs;
                ^~~~~
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 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sgetf2.c  -fPIC -DPIC -o .libs/sgetf2.o
../../../../src/gmxlib/gmx_lapack/sgetf2.c: In function 'sgetf2_':
../../../../src/gmxlib/gmx_lapack/sgetf2.c:17:9: warning: variable 'one' set but not used [-Wunused-but-set-variable]
   float one,minusone;
         ^~~
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 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dsyevr.c  -fPIC -DPIC -o .libs/dsyevr.o
../../../../src/gmxlib/gmx_lapack/dsyevr.c: In function 'dsyevr_':
../../../../src/gmxlib/gmx_lapack/dsyevr.c:36:12: warning: variable 'abstll' set but not used [-Wunused-but-set-variable]
     double abstll, bignum;
            ^~~~~~
../../../../src/gmxlib/gmx_lapack/dsyevr.c:33:17: warning: variable 'ieeeok' set but not used [-Wunused-but-set-variable]
     int iscale, ieeeok, indibl, indifl;
                 ^~~~~~
../../../../src/gmxlib/gmx_lapack/dsyevr.c:21:22: warning: variable 'vuu' set but not used [-Wunused-but-set-variable]
     double eps, vll, vuu, tmp1;
                      ^~~
../../../../src/gmxlib/gmx_lapack/dsyevr.c:21:17: warning: variable 'vll' set but not used [-Wunused-but-set-variable]
     double eps, vll, vuu, tmp1;
                 ^~~
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 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlarrbx.c  -fPIC -DPIC -o .libs/dlarrbx.o
../../../../src/gmxlib/gmx_lapack/dlarrbx.c: In function 'dlarrbx_':
../../../../src/gmxlib/gmx_lapack/dlarrbx.c:36:33: warning: variable 'error' set but not used [-Wunused-but-set-variable]
     double right, width, dplus, error;
                                 ^~~~~
../../../../src/gmxlib/gmx_lapack/dlarrbx.c:34:12: warning: variable 'eps' set but not used [-Wunused-but-set-variable]
     double eps, tmp, left;
            ^~~
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../../../../src/gmxlib/gmx_lapack/sbdsqr.c: In function 'sbdsqr_':
../../../../src/gmxlib/gmx_lapack/sbdsqr.c:61:11: warning: unused variable 'ftmp' [-Wunused-variable]
     float ftmp;
           ^~~~
../../../../src/gmxlib/gmx_lapack/sbdsqr.c:59:11: warning: variable 'sminlo' set but not used [-Wunused-but-set-variable]
     float sminlo, tolmul;
           ^~~~~~
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../../../../src/gmxlib/gmx_lapack/slasr.c: In function 'slasr_':
../../../../src/gmxlib/gmx_lapack/slasr.c:21:17: warning: variable 'info' set but not used [-Wunused-but-set-variable]
     int i__, j, info;
                 ^~~~
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../../../../src/gmxlib/gmx_lapack/sorm2r.c: In function 'sorm2r_':
../../../../src/gmxlib/gmx_lapack/sorm2r.c:19:42: warning: variable 'nq' set but not used [-Wunused-but-set-variable]
     int i__, i1, i2, i3, ic, jc, mi, ni, nq;
                                          ^~
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../../../../src/gmxlib/gmx_lapack/sgesdd.c: In function 'sgesdd_':
../../../../src/gmxlib/gmx_lapack/sgesdd.c:40:9: warning: variable 'wntqas' set but not used [-Wunused-but-set-variable]
     int wntqas, lquery;
         ^~~~~~
../../../../src/gmxlib/gmx_lapack/sgesdd.c:38:9: warning: variable 'minwrk' set but not used [-Wunused-but-set-variable]
     int minwrk, ldwrku, maxwrk, ldwkvt;
         ^~~~~~
../../../../src/gmxlib/gmx_lapack/sgesdd.c:35:16: warning: variable 'wntqo' set but not used [-Wunused-but-set-variable]
     int wntqn, wntqo, wntqs;
                ^~~~~
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make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack'
/bin/sh ../../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o ssteqr.lo ../../../../src/gmxlib/gmx_lapack/ssteqr.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/ssteqr.c  -fPIC -DPIC -o .libs/ssteqr.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack'
/bin/sh ../../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o slansy.lo ../../../../src/gmxlib/gmx_lapack/slansy.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slansy.c  -fPIC -DPIC -o .libs/slansy.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack'
/bin/sh ../../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o slar1vx.lo ../../../../src/gmxlib/gmx_lapack/slar1vx.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slar1vx.c  -fPIC -DPIC -o .libs/slar1vx.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack'
/bin/sh ../../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o ilasrt2.lo ../../../../src/gmxlib/gmx_lapack/ilasrt2.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/ilasrt2.c  -fPIC -DPIC -o .libs/ilasrt2.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack'
/bin/sh ../../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o ssyevr.lo ../../../../src/gmxlib/gmx_lapack/ssyevr.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/ssyevr.c  -fPIC -DPIC -o .libs/ssyevr.o
../../../../src/gmxlib/gmx_lapack/ssyevr.c: In function 'ssyevr_':
../../../../src/gmxlib/gmx_lapack/ssyevr.c:36:11: warning: variable 'abstll' set but not used [-Wunused-but-set-variable]
     float abstll, bignum;
           ^~~~~~
../../../../src/gmxlib/gmx_lapack/ssyevr.c:33:17: warning: variable 'ieeeok' set but not used [-Wunused-but-set-variable]
     int iscale, ieeeok, indibl, indifl;
                 ^~~~~~
../../../../src/gmxlib/gmx_lapack/ssyevr.c:21:21: warning: variable 'vuu' set but not used [-Wunused-but-set-variable]
     float eps, vll, vuu, tmp1;
                     ^~~
../../../../src/gmxlib/gmx_lapack/ssyevr.c:21:16: warning: variable 'vll' set but not used [-Wunused-but-set-variable]
     float eps, vll, vuu, tmp1;
                ^~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack'
/bin/sh ../../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o slarrfx.lo ../../../../src/gmxlib/gmx_lapack/slarrfx.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slarrfx.c  -fPIC -DPIC -o .libs/slarrfx.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack'
/bin/sh ../../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o slarrbx.lo ../../../../src/gmxlib/gmx_lapack/slarrbx.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slarrbx.c  -fPIC -DPIC -o .libs/slarrbx.o
../../../../src/gmxlib/gmx_lapack/slarrbx.c: In function 'slarrbx_':
../../../../src/gmxlib/gmx_lapack/slarrbx.c:36:32: warning: variable 'error' set but not used [-Wunused-but-set-variable]
     float right, width, dplus, error;
                                ^~~~~
../../../../src/gmxlib/gmx_lapack/slarrbx.c:34:11: warning: variable 'eps' set but not used [-Wunused-but-set-variable]
     float eps, tmp, left;
           ^~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack'
/bin/sh ../../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o slarrvx.lo ../../../../src/gmxlib/gmx_lapack/slarrvx.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slarrvx.c  -fPIC -DPIC -o .libs/slarrvx.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack'
/bin/sh ../../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o slarrex.lo ../../../../src/gmxlib/gmx_lapack/slarrex.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slarrex.c  -fPIC -DPIC -o .libs/slarrex.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack'
/bin/sh ../../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o liblapack.la  dbdsdc.lo dgetf2.lo dlamrg.lo dlarnv.lo dlasd0.lo dlasda.lo dlasq6.lo dorgl2.lo dormqr.lo dbdsqr.lo dgetrf.lo dlange.lo dlasd1.lo dtrtri.lo dlasdq.lo dlasr.lo dorglq.lo dormtr.lo dgebd2.lo dlabrd.lo dlanst.lo dlasd2.lo dlasdt.lo dlasrt.lo dorgqr.lo dstebz.lo dgebrd.lo dsytrd.lo dlacpy.lo dlapy2.lo dlasd3.lo dlaset.lo dlassq.lo dorm2l.lo dgetrs.lo dstegr.lo dgelq2.lo dlae2.lo dlasd4.lo dlasq1.lo dtrti2.lo dgetri.lo dlasv2.lo dorm2r.lo dstein.lo dgelqf.lo dlaebz.lo dlarf.lo dlartg.lo dlasd5.lo dlasq2.lo dlaswp.lo dormbr.lo dsterf.lo dgeqr2.lo dlaed6.lo dlarfb.lo dlaruv.lo dlasd6.lo dlasq3.lo dlatrd.lo dorml2.lo dstevr.lo dgeqrf.lo dlagtf.lo dlarfg.lo dlas2.lo dlasd7.lo dlasq4.lo dorg2r.lo dormlq.lo dsytd2.lo dgesdd.lo dlagts.lo dlarft.lo dlascl.lo dlasd8.lo dlasq5.lo dorgbr.lo dormql.lo dlaev2.lo dsteqr.lo dsyevr.lo dlasrt2.lo dlansy.lo dlar1vx.lo dlarrbx.lo dlarrex.lo dlarrfx.lo dlarrvx.lo sbdsdc.lo sgetf2.lo slamrg.lo slarnv.lo slasd0.lo slasda.lo slasq6.lo sorgl2.lo sormqr.lo sbdsqr.lo sgetrf.lo slange.lo slasd1.lo ssytrd.lo slasdq.lo slasr.lo sorglq.lo sormtr.lo sgebd2.lo slabrd.lo slanst.lo slasd2.lo slasdt.lo slasrt.lo sorgqr.lo sstebz.lo sgebrd.lo sgetrs.lo slacpy.lo slapy2.lo slasd3.lo slaset.lo slassq.lo sorm2l.lo sgetri.lo sstegr.lo sgelq2.lo slae2.lo slasd4.lo slasq1.lo strti2.lo strtri.lo slasv2.lo sorm2r.lo sstein.lo sgelqf.lo slaebz.lo slarf.lo slartg.lo slasd5.lo slasq2.lo slaswp.lo sormbr.lo ssterf.lo sgeqr2.lo slaed6.lo slarfb.lo slaruv.lo slasd6.lo slasq3.lo slatrd.lo sorml2.lo sstevr.lo sgeqrf.lo slagtf.lo slarfg.lo slas2.lo slasd7.lo slasq4.lo sorg2r.lo sormlq.lo ssytd2.lo sgesdd.lo slagts.lo slarft.lo slascl.lo slasd8.lo slasq5.lo sorgbr.lo sormql.lo slaev2.lo ssteqr.lo ssyevr.lo slasrt2.lo slansy.lo slar1vx.lo slarrbx.lo slarrex.lo slarrfx.lo slarrvx.lo ilasrt2.lo  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
ar cru .libs/liblapack.a .libs/dbdsdc.o .libs/dgetf2.o .libs/dlamrg.o .libs/dlarnv.o .libs/dlasd0.o .libs/dlasda.o .libs/dlasq6.o .libs/dorgl2.o .libs/dormqr.o .libs/dbdsqr.o .libs/dgetrf.o .libs/dlange.o .libs/dlasd1.o .libs/dtrtri.o .libs/dlasdq.o .libs/dlasr.o .libs/dorglq.o .libs/dormtr.o .libs/dgebd2.o .libs/dlabrd.o .libs/dlanst.o .libs/dlasd2.o .libs/dlasdt.o .libs/dlasrt.o .libs/dorgqr.o .libs/dstebz.o .libs/dgebrd.o .libs/dsytrd.o .libs/dlacpy.o .libs/dlapy2.o .libs/dlasd3.o .libs/dlaset.o .libs/dlassq.o .libs/dorm2l.o .libs/dgetrs.o .libs/dstegr.o .libs/dgelq2.o .libs/dlae2.o .libs/dlasd4.o .libs/dlasq1.o .libs/dtrti2.o .libs/dgetri.o .libs/dlasv2.o .libs/dorm2r.o .libs/dstein.o .libs/dgelqf.o .libs/dlaebz.o .libs/dlarf.o .libs/dlartg.o .libs/dlasd5.o .libs/dlasq2.o .libs/dlaswp.o .libs/dormbr.o .libs/dsterf.o .libs/dgeqr2.o .libs/dlaed6.o .libs/dlarfb.o .libs/dlaruv.o .libs/dlasd6.o .libs/dlasq3.o .libs/dlatrd.o .libs/dorml2.o .libs/dstevr.o .libs/dgeqrf.o .libs/dlagtf.o .libs/dlarfg.o .libs/dlas2.o .libs/dlasd7.o .libs/dlasq4.o .libs/dorg2r.o .libs/dormlq.o .libs/dsytd2.o .libs/dgesdd.o .libs/dlagts.o .libs/dlarft.o .libs/dlascl.o .libs/dlasd8.o .libs/dlasq5.o .libs/dorgbr.o .libs/dormql.o .libs/dlaev2.o .libs/dsteqr.o .libs/dsyevr.o .libs/dlasrt2.o .libs/dlansy.o .libs/dlar1vx.o .libs/dlarrbx.o .libs/dlarrex.o .libs/dlarrfx.o .libs/dlarrvx.o .libs/sbdsdc.o .libs/sgetf2.o .libs/slamrg.o .libs/slarnv.o .libs/slasd0.o .libs/slasda.o .libs/slasq6.o .libs/sorgl2.o .libs/sormqr.o .libs/sbdsqr.o .libs/sgetrf.o .libs/slange.o .libs/slasd1.o .libs/ssytrd.o .libs/slasdq.o .libs/slasr.o .libs/sorglq.o .libs/sormtr.o .libs/sgebd2.o .libs/slabrd.o .libs/slanst.o .libs/slasd2.o .libs/slasdt.o .libs/slasrt.o .libs/sorgqr.o .libs/sstebz.o .libs/sgebrd.o .libs/sgetrs.o .libs/slacpy.o .libs/slapy2.o .libs/slasd3.o .libs/slaset.o .libs/slassq.o .libs/sorm2l.o .libs/sgetri.o .libs/sstegr.o .libs/sgelq2.o .libs/slae2.o .libs/slasd4.o .libs/slasq1.o .libs/strti2.o .libs/strtri.o .libs/slasv2.o .libs/sorm2r.o .libs/sstein.o .libs/sgelqf.o .libs/slaebz.o .libs/slarf.o .libs/slartg.o .libs/slasd5.o .libs/slasq2.o .libs/slaswp.o .libs/sormbr.o .libs/ssterf.o .libs/sgeqr2.o .libs/slaed6.o .libs/slarfb.o .libs/slaruv.o .libs/slasd6.o .libs/slasq3.o .libs/slatrd.o .libs/sorml2.o .libs/sstevr.o .libs/sgeqrf.o .libs/slagtf.o .libs/slarfg.o .libs/slas2.o .libs/slasd7.o .libs/slasq4.o .libs/sorg2r.o .libs/sormlq.o .libs/ssytd2.o .libs/sgesdd.o .libs/slagts.o .libs/slarft.o .libs/slascl.o .libs/slasd8.o .libs/slasq5.o .libs/sorgbr.o .libs/sormql.o .libs/slaev2.o .libs/ssteqr.o .libs/ssyevr.o .libs/slasrt2.o .libs/slansy.o .libs/slar1vx.o .libs/slarrbx.o .libs/slarrex.o .libs/slarrfx.o .libs/slarrvx.o .libs/ilasrt2.o
ranlib .libs/liblapack.a
creating liblapack.la
(cd .libs && rm -f liblapack.la && ln -s ../liblapack.la liblapack.la)
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o calcgrid.lo ../../../src/gmxlib/calcgrid.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/calcgrid.c  -fPIC -DPIC -o .libs/calcgrid.o
../../../src/gmxlib/calcgrid.c: In function 'calc_grid':
../../../src/gmxlib/calcgrid.c:89:8: warning: unused variable 'tmp' [-Wunused-variable]
   real tmp[3];
        ^~~
../../../src/gmxlib/calcgrid.c:86:10: warning: unused variable 'j' [-Wunused-variable]
   int  i,j,nmin[DIM];
          ^
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o 3dview.lo ../../../src/gmxlib/3dview.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/3dview.c  -fPIC -DPIC -o .libs/3dview.o
../../../src/gmxlib/3dview.c: In function 'reset_view':
../../../src/gmxlib/3dview.c:282:8: warning: unused variable 'i' [-Wunused-variable]
   int  i;
        ^
In file included from ../../../src/gmxlib/3dview.c:47:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/3dview.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o atomprop.lo ../../../src/gmxlib/atomprop.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/atomprop.c  -fPIC -DPIC -o .libs/atomprop.o
In file included from ../../../src/gmxlib/atomprop.c:52:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/gmxlib/atomprop.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o do_fit.lo ../../../src/gmxlib/do_fit.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/do_fit.c  -fPIC -DPIC -o .libs/do_fit.o
../../../src/gmxlib/do_fit.c: In function 'calc_fit_R':
../../../src/gmxlib/do_fit.c:103:18: warning: unused variable 'm' [-Wunused-variable]
   int    c,r,n,j,m,i,irot,s;
                  ^
../../../src/gmxlib/do_fit.c: In function 'do_fit_ndim':
../../../src/gmxlib/do_fit.c:214:10: warning: unused variable 'i' [-Wunused-variable]
   int    i,j,m,r,c;
          ^
In file included from ../../../src/gmxlib/do_fit.c:44:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/gmxlib/do_fit.c:40:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o copyrite.lo ../../../src/gmxlib/copyrite.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/copyrite.c  -fPIC -DPIC -o .libs/copyrite.o
../../../src/gmxlib/copyrite.c: In function 'cool_quote':
../../../src/gmxlib/copyrite.c:181:9: warning: unused variable 's' [-Wunused-variable]
   char *s,*ptr;
         ^
../../../src/gmxlib/copyrite.c: In function 'please_cite':
../../../src/gmxlib/copyrite.c:469:8: warning: unused variable 'j' [-Wunused-variable]
   int  j,index;
        ^
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/copyrite.c:53:
At top level:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o calch.lo ../../../src/gmxlib/calch.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/calch.c  -fPIC -DPIC -o .libs/calch.o
../../../src/gmxlib/calch.c: In function 'gen_waterhydrogen':
../../../src/gmxlib/calch.c:81:14: warning: unused variable 'kkk' [-Wunused-variable]
   rvec       kkk;
              ^~~
In file included from ../../../src/gmxlib/calch.c:43:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/gmxlib/calch.c:42:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o ffscanf.lo ../../../src/gmxlib/ffscanf.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/ffscanf.c  -fPIC -DPIC -o .libs/ffscanf.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o bondfree.lo ../../../src/gmxlib/bondfree.c
mkdir .libs
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/bondfree.c  -fPIC -DPIC -o .libs/bondfree.o
../../../src/gmxlib/bondfree.c: In function 'FENE_bonds':
../../../src/gmxlib/bondfree.c:220:9: warning: unused variable 'dr' [-Wunused-variable]
   real  dr,dr2,bm2,omdr2obm2,fbond,vbond,fij,vtot;
         ^~
../../../src/gmxlib/bondfree.c: In function 'do_1_thole':
../../../src/gmxlib/bondfree.c:534:20: warning: unused variable 'r12n' [-Wunused-variable]
   real r12sq,r12_1,r12n,r12bar,v0,v1,fscal,ebar,fff;
                    ^~~~
../../../src/gmxlib/bondfree.c: In function 'posres':
../../../src/gmxlib/bondfree.c:1136:19: warning: unused variable 'fc' [-Wunused-variable]
   real v,vtot,fm,*fc;
                   ^~
../../../src/gmxlib/bondfree.c:1134:22: warning: unused variable 'ki' [-Wunused-variable]
   int  i,ai,m,d,type,ki,npbcdim=0;
                      ^~
../../../src/gmxlib/bondfree.c: In function 'cross_bond_angle':
../../../src/gmxlib/bondfree.c:1687:32: warning: variable 't3' set but not used [-Wunused-but-set-variable]
   int  i,ai,aj,ak,type,m,t1,t2,t3;
                                ^~
../../../src/gmxlib/bondfree.c: In function 'bonded_tab':
../../../src/gmxlib/bondfree.c:1762:10: warning: unused variable 'f' [-Wunused-variable]
   real v,f,dvdl;
          ^
../../../src/gmxlib/bondfree.c:1762:8: warning: unused variable 'v' [-Wunused-variable]
   real v,f,dvdl;
        ^
../../../src/gmxlib/bondfree.c: In function 'tab_angles':
../../../src/gmxlib/bondfree.c:1887:12: warning: unused variable 'snt' [-Wunused-variable]
       real snt,st,sth;
            ^~~
In file included from ../../../src/gmxlib/bondfree.c:56:
At top level:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/gmxlib/bondfree.c:42:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/bondfree.c:42:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o checkpoint.lo ../../../src/gmxlib/checkpoint.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/checkpoint.c  -fPIC -DPIC -o .libs/checkpoint.o
../../../src/gmxlib/checkpoint.c: In function 'do_cpte_ints':
../../../src/gmxlib/checkpoint.c:305:16: warning: unused variable 'i' [-Wunused-variable]
     int  nf,dt,i;
                ^
../../../src/gmxlib/checkpoint.c: In function 'do_cpte_doubles':
../../../src/gmxlib/checkpoint.c:371:16: warning: unused variable 'i' [-Wunused-variable]
     int  nf,dt,i;
                ^
../../../src/gmxlib/checkpoint.c: In function 'do_cpt_header':
../../../src/gmxlib/checkpoint.c:534:10: warning: unused variable 'i' [-Wunused-variable]
     int  i;
          ^
../../../src/gmxlib/checkpoint.c: In function 'do_cpt_files':
../../../src/gmxlib/checkpoint.c:743:9: warning: unused variable 'mask' [-Wunused-variable]
  off_t  mask = 0xFFFFFFFFL;
         ^~~~
../../../src/gmxlib/checkpoint.c: In function 'write_checkpoint':
../../../src/gmxlib/checkpoint.c:837:30: warning: unused variable 'i' [-Wunused-variable]
     int  flags_eks,flags_enh,i;
                              ^
../../../src/gmxlib/checkpoint.c:833:29: warning: unused variable 'flag_64bit' [-Wunused-variable]
     int  nppnodes,npmenodes,flag_64bit;
                             ^~~~~~~~~~
../../../src/gmxlib/checkpoint.c: In function 'read_checkpoint':
../../../src/gmxlib/checkpoint.c:1254:40: warning: left-hand operand of comma expression has no effect [-Wunused-value]
             if (outputfiles[i].filename,outputfiles[i].offset < 0)
                                        ^
../../../src/gmxlib/checkpoint.c:1036:7: warning: unused variable 'filename' [-Wunused-variable]
  char filename[STRLEN];
       ^~~~~~~~
../../../src/gmxlib/checkpoint.c:1033:15: warning: unused variable 'j' [-Wunused-variable]
     int  fp,i,j;
               ^
../../../src/gmxlib/checkpoint.c: In function 'list_checkpoint':
../../../src/gmxlib/checkpoint.c:1421:12: warning: unused variable 'j' [-Wunused-variable]
     int  i,j;
            ^
../../../src/gmxlib/checkpoint.c:1421:10: warning: unused variable 'i' [-Wunused-variable]
     int  i,j;
          ^
../../../src/gmxlib/checkpoint.c:1420:10: warning: unused variable 'indent' [-Wunused-variable]
     int  indent;
          ^~~~~~
In file included from ../../../src/gmxlib/checkpoint.c:34:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/checkpoint.c:34:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/checkpoint.c:32:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o ewald_util.lo ../../../src/gmxlib/ewald_util.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/ewald_util.c  -fPIC -DPIC -o .libs/ewald_util.o
In file included from ../../../src/gmxlib/ewald_util.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/ewald_util.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o enxio.lo ../../../src/gmxlib/enxio.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/enxio.c  -fPIC -DPIC -o .libs/enxio.o
../../../src/gmxlib/enxio.c: In function 'empty_file':
../../../src/gmxlib/enxio.c:220:8: warning: variable 'ret' set but not used [-Wunused-but-set-variable]
   int  ret;
        ^~~
../../../src/gmxlib/enxio.c: In function 'get_enx_state':
../../../src/gmxlib/enxio.c:443:16: warning: unused variable 'pcouplmu_nm' [-Wunused-variable]
   static char *pcouplmu_nm[] = {
                ^~~~~~~~~~~
At top level:
../../../src/gmxlib/enxio.c:443:16: warning: 'pcouplmu_nm' defined but not used [-Wunused-variable]
In file included from ../../../src/gmxlib/enxio.c:46:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/enxio.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o futil.lo ../../../src/gmxlib/futil.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/futil.c  -fPIC -DPIC -o .libs/futil.o
../../../src/gmxlib/futil.c: In function 'ffopen':
../../../src/gmxlib/futil.c:287:18: warning: unused variable 'bf' [-Wunused-variable]
   char buf[256],*bf,*bufsize=0,*ptr;
                  ^~
../../../src/gmxlib/futil.c: In function 'get_libdir':
../../../src/gmxlib/futil.c:397:22: warning: variable 'pdum' set but not used [-Wunused-but-set-variable]
   char *dir,*ptr,*s,*pdum;
                      ^~~~
../../../src/gmxlib/futil.c:395:8: warning: unused variable 'test_file' [-Wunused-variable]
   char test_file[MAX_PATHBUF];
        ^~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/futil.c:53:
At top level:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
../../../src/gmxlib/futil.c: In function 'ffopen':
../../../src/gmxlib/futil.c:187:28: warning: '%s' directive writing up to 255 bytes into a region of size 244 [-Wformat-overflow=]
   sprintf(buf,"gunzip -c < %s",fn);
                            ^~
../../../src/gmxlib/futil.c:329:12:
  ff=gunzip(buf,mode);
            ~~~              
In file included from /usr/include/stdio.h:862,
                 from ../../../src/gmxlib/futil.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 13 and 268 bytes into a destination of size 256
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/gmxlib/futil.c:173:32: warning: '%s' directive writing up to 255 bytes into a region of size 240 [-Wformat-overflow=]
   sprintf(buf,"uncompress -c < %s",fn);
                                ^~
../../../src/gmxlib/futil.c:324:21:
       ff=uncompress(buf,mode);
                     ~~~         
In file included from /usr/include/stdio.h:862,
                 from ../../../src/gmxlib/futil.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 17 and 272 bytes into a destination of size 256
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o ifunc.lo ../../../src/gmxlib/ifunc.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/ifunc.c  -fPIC -DPIC -o .libs/ifunc.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o disre.lo ../../../src/gmxlib/disre.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/disre.c  -fPIC -DPIC -o .libs/disre.o
../../../src/gmxlib/disre.c: In function 'init_disres':
../../../src/gmxlib/disre.c:62:19: warning: variable 'ip' set but not used [-Wunused-but-set-variable]
     t_iparams    *ip;
                   ^~
../../../src/gmxlib/disre.c:61:26: warning: unused variable 'i' [-Wunused-variable]
     int          fa,nmol,i,npair,np;
                          ^
../../../src/gmxlib/disre.c: In function 'calc_disres_R_6':
../../../src/gmxlib/disre.c:217:23: warning: unused variable 'dt' [-Wunused-variable]
     ivec        it,jt,dt;
                       ^~
../../../src/gmxlib/disre.c:217:20: warning: unused variable 'jt' [-Wunused-variable]
     ivec        it,jt,dt;
                    ^~
../../../src/gmxlib/disre.c:217:17: warning: unused variable 'it' [-Wunused-variable]
     ivec        it,jt,dt;
                 ^~
../../../src/gmxlib/disre.c:212:37: warning: unused variable 'm' [-Wunused-variable]
     int         fa,res,i,pair,ki,kj,m;
                                     ^
../../../src/gmxlib/disre.c:212:34: warning: unused variable 'kj' [-Wunused-variable]
     int         fa,res,i,pair,ki,kj,m;
                                  ^~
../../../src/gmxlib/disre.c:212:31: warning: unused variable 'ki' [-Wunused-variable]
     int         fa,res,i,pair,ki,kj,m;
                               ^~
../../../src/gmxlib/disre.c:212:24: warning: unused variable 'i' [-Wunused-variable]
     int         fa,res,i,pair,ki,kj,m;
                        ^
../../../src/gmxlib/disre.c: In function 'ta_disres':
../../../src/gmxlib/disre.c:338:20: warning: unused variable 'jt' [-Wunused-variable]
     ivec        it,jt,dt;
                    ^~
../../../src/gmxlib/disre.c:338:17: warning: unused variable 'it' [-Wunused-variable]
     ivec        it,jt,dt;
                 ^~
In file included from ../../../src/gmxlib/disre.c:52:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/gmxlib/disre.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/disre.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o cinvsqrtdata.lo ../../../src/gmxlib/cinvsqrtdata.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/cinvsqrtdata.c  -fPIC -DPIC -o .libs/cinvsqrtdata.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmxfio.lo ../../../src/gmxlib/gmxfio.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/gmxfio.c  -fPIC -DPIC -o .libs/gmxfio.o
../../../src/gmxlib/gmxfio.c: In function 'gmx_fio_fopen':
../../../src/gmxlib/gmxfio.c:803:8: warning: unused variable 'fp' [-Wunused-variable]
  FILE *fp;
        ^~
../../../src/gmxlib/gmxfio.c: In function 'gmx_fio_get_output_file_positions':
../../../src/gmxlib/gmxfio.c:885:27: warning: unused variable 'pos' [-Wunused-variable]
  long                     pos;
                           ^~~
../../../src/gmxlib/gmxfio.c:884:34: warning: unused variable 'pos_lo' [-Wunused-variable]
  int                      pos_hi,pos_lo;
                                  ^~~~~~
../../../src/gmxlib/gmxfio.c:884:27: warning: unused variable 'pos_hi' [-Wunused-variable]
  int                      pos_hi,pos_lo;
                           ^~~~~~
../../../src/gmxlib/gmxfio.c:883:36: warning: unused variable 'rc' [-Wunused-variable]
  int                      i,nfiles,rc,nalloc;
                                    ^~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gbutil.lo ../../../src/gmxlib/gbutil.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/gbutil.c  -fPIC -DPIC -o .libs/gbutil.o
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/gmxlib/gbutil.c:45:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/gmxlib/gbutil.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/gbutil.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o macros.lo ../../../src/gmxlib/macros.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/macros.c  -fPIC -DPIC -o .libs/macros.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o invblock.lo ../../../src/gmxlib/invblock.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/invblock.c  -fPIC -DPIC -o .libs/invblock.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o sparsematrix.lo ../../../src/gmxlib/sparsematrix.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/sparsematrix.c  -fPIC -DPIC -o .libs/sparsematrix.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o maths.lo ../../../src/gmxlib/maths.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/maths.c  -fPIC -DPIC -o .libs/maths.o
In file included from ../../../src/gmxlib/maths.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o index.lo ../../../src/gmxlib/index.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/index.c  -fPIC -DPIC -o .libs/index.o
../../../src/gmxlib/index.c: In function 'analyse_prot':
../../../src/gmxlib/index.c:298:15: warning: unused variable 'nnpres' [-Wunused-variable]
   int     nra,nnpres,npres;
               ^~~~~~
../../../src/gmxlib/index.c: In function 'init_index':
../../../src/gmxlib/index.c:532:19: warning: variable 'nread' set but not used [-Wunused-but-set-variable]
   int      i,j,ng,nread;
                   ^~~~~
In file included from ../../../src/gmxlib/index.c:51:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/index.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o main.lo ../../../src/gmxlib/main.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/main.c  -fPIC -DPIC -o .libs/main.o
../../../src/gmxlib/main.c: In function 'par_fn':
../../../src/gmxlib/main.c:68:7: warning: unused variable 'n' [-Wunused-variable]
   int n;
       ^
../../../src/gmxlib/main.c: In function 'gmx_log_open':
../../../src/gmxlib/main.c:124:12: warning: unused variable 'testlen' [-Wunused-variable]
   int  len,testlen,pid;
            ^~~~~~~
../../../src/gmxlib/main.c: In function 'init_multisystem':
../../../src/gmxlib/main.c:235:8: warning: unused variable 'rank' [-Wunused-variable]
   int *rank;
        ^~~~
../../../src/gmxlib/main.c: In function 'init_par':
../../../src/gmxlib/main.c:309:13: warning: unused variable 'i' [-Wunused-variable]
   int       i;
             ^
../../../src/gmxlib/main.c:308:15: warning: variable 'argv' set but not used [-Wunused-but-set-variable]
   char      **argv;
               ^~~~
In file included from ../../../include/pull.h:44,
                 from ../../../include/mdrun.h:56,
                 from ../../../src/gmxlib/main.c:52:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../include/pull.h:44,
                 from ../../../include/mdrun.h:56,
                 from ../../../src/gmxlib/main.c:52:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/mdrun.h:50,
                 from ../../../src/gmxlib/main.c:52:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o matio.lo ../../../src/gmxlib/matio.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/matio.c  -fPIC -DPIC -o .libs/matio.o
../../../src/gmxlib/matio.c: In function 'write_xpm_map_split':
../../../src/gmxlib/matio.c:636:16: warning: unused variable 'fac' [-Wunused-variable]
   real   r,g,b,fac;
                ^~~
../../../src/gmxlib/matio.c:636:14: warning: unused variable 'b' [-Wunused-variable]
   real   r,g,b,fac;
              ^
../../../src/gmxlib/matio.c:636:12: warning: unused variable 'g' [-Wunused-variable]
   real   r,g,b,fac;
            ^
../../../src/gmxlib/matio.c:636:10: warning: unused variable 'r' [-Wunused-variable]
   real   r,g,b,fac;
          ^
../../../src/gmxlib/matio.c:635:10: warning: unused variable 'i' [-Wunused-variable]
   int    i,ntot;
          ^
In file included from ../../../src/gmxlib/matio.c:50:
At top level:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/matio.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_fatal.lo ../../../src/gmxlib/gmx_fatal.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/gmx_fatal.c  -fPIC -DPIC -o .libs/gmx_fatal.o
../../../src/gmxlib/gmx_fatal.c:226:13: warning: 'fatal_error' defined but not used [-Wunused-function]
 static void fatal_error(int f_errno,const char *fmt,...)
             ^~~~~~~~~~~
../../../src/gmxlib/gmx_fatal.c:115:13: warning: 'bputi' defined but not used [-Wunused-function]
 static void bputi(char *msg,int *len,int val,int radix,int fld,bool bNeg)
             ^~~~~
In file included from ../../../src/gmxlib/gmx_fatal.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/gmx_fatal.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o filenm.lo ../../../src/gmxlib/filenm.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/filenm.c  -fPIC -DPIC -o .libs/filenm.o
../../../src/gmxlib/filenm.c: In function 'add_suffix_to_output_names':
../../../src/gmxlib/filenm.c:811:12: warning: unused variable 'pos' [-Wunused-variable]
  int   i,j,pos;
            ^~~
In file included from ../../../include/wman.h:44,
                 from ../../../src/gmxlib/filenm.c:48:
At top level:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
../../../src/gmxlib/filenm.c: In function 'add_suffix_to_output_names':
../../../src/gmxlib/filenm.c:825:27: warning: '.' directive writing 1 byte into a region of size between 0 and 4095 [-Wformat-overflow=]
     sprintf(newname,"%s.%s.%s",buf,suffix,extpos+1);
                           ^
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/gmxlib/filenm.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 3 or more bytes (assuming 4098) into a destination of size 4096
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o names.lo ../../../src/gmxlib/names.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/names.c  -fPIC -DPIC -o .libs/names.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o mshift.lo ../../../src/gmxlib/mshift.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/mshift.c  -fPIC -DPIC -o .libs/mshift.o
../../../src/gmxlib/mshift.c: In function 'compact_graph':
../../../src/gmxlib/mshift.c:243:12: warning: unused variable 'e' [-Wunused-variable]
   atom_id *e;
            ^
../../../src/gmxlib/mshift.c:242:9: warning: unused variable 'j' [-Wunused-variable]
   int i,j,n,max_nedge;
         ^
../../../src/gmxlib/mshift.c: In function 'mk_graph_ilist':
../../../src/gmxlib/mshift.c:307:13: warning: variable 'nbtot' set but not used [-Wunused-but-set-variable]
   int     i,nbtot;
             ^~~~~
In file included from ../../../src/gmxlib/mshift.c:46:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/gmxlib/mshift.c:44:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/mshift.c:44:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o network.lo ../../../src/gmxlib/network.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/network.c  -fPIC -DPIC -o .libs/network.o
../../../src/gmxlib/network.c: In function 'gmx_mpi_initialized':
../../../src/gmxlib/network.c:57:7: warning: unused variable 'n' [-Wunused-variable]
   int n;
       ^
../../../src/gmxlib/network.c: In function 'gmx_setup_nodecomm':
../../../src/gmxlib/network.c:245:40: warning: unused variable 'ni' [-Wunused-variable]
   int  n,rank,resultlen,hostnum,i,j,ng,ni;
                                        ^~
../../../src/gmxlib/network.c:245:37: warning: unused variable 'ng' [-Wunused-variable]
   int  n,rank,resultlen,hostnum,i,j,ng,ni;
                                     ^~
../../../src/gmxlib/network.c:245:35: warning: unused variable 'j' [-Wunused-variable]
   int  n,rank,resultlen,hostnum,i,j,ng,ni;
                                   ^
../../../src/gmxlib/network.c:245:33: warning: unused variable 'i' [-Wunused-variable]
   int  n,rank,resultlen,hostnum,i,j,ng,ni;
                                 ^
../../../src/gmxlib/network.c:245:25: warning: unused variable 'hostnum' [-Wunused-variable]
   int  n,rank,resultlen,hostnum,i,j,ng,ni;
                         ^~~~~~~
../../../src/gmxlib/network.c:245:15: warning: unused variable 'resultlen' [-Wunused-variable]
   int  n,rank,resultlen,hostnum,i,j,ng,ni;
               ^~~~~~~~~
../../../src/gmxlib/network.c:245:10: warning: unused variable 'rank' [-Wunused-variable]
   int  n,rank,resultlen,hostnum,i,j,ng,ni;
          ^~~~
../../../src/gmxlib/network.c:245:8: warning: unused variable 'n' [-Wunused-variable]
   int  n,rank,resultlen,hostnum,i,j,ng,ni;
        ^
../../../src/gmxlib/network.c: In function 'gmx_finalize':
../../../src/gmxlib/network.c:522:7: warning: unused variable 'ret' [-Wunused-variable]
   int ret;
       ^~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/network.c:46:
At top level:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/gmxlib/network.c:45:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o orires.lo ../../../src/gmxlib/orires.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/orires.c  -fPIC -DPIC -o .libs/orires.o
../../../src/gmxlib/orires.c: In function 'init_orires':
../../../src/gmxlib/orires.c:59:26: warning: unused variable 'nr' [-Wunused-variable]
     int    i,j,d,ex,nmol,nr,*nr_ex;
                          ^~
In file included from ../../../src/gmxlib/orires.c:49:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/gmxlib/orires.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/orires.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nrnb.lo ../../../src/gmxlib/nrnb.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/nrnb.c  -fPIC -DPIC -o .libs/nrnb.o
../../../src/gmxlib/nrnb.c: In function 'pr_load':
../../../src/gmxlib/nrnb.c:473:3: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
   for(j=0; (j<eNRNB); j++)
   ^~~
../../../src/gmxlib/nrnb.c:476:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
     fprintf(log,"\nDetailed load balancing info in percentage of average\n");
     ^~~~~~~
In file included from ../../../src/gmxlib/nrnb.c:48:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nrjac.lo ../../../src/gmxlib/nrjac.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/nrjac.c  -fPIC -DPIC -o .libs/nrjac.o
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/gmxlib/nrjac.c:44:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o mtxio.lo ../../../src/gmxlib/mtxio.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/mtxio.c  -fPIC -DPIC -o .libs/mtxio.o
../../../src/gmxlib/mtxio.c: In function 'gmx_mtxio_write':
../../../src/gmxlib/mtxio.c:90:13: warning: variable 'xd' set but not used [-Wunused-but-set-variable]
     XDR *   xd;
             ^~
../../../src/gmxlib/mtxio.c: In function 'gmx_mtxio_read':
../../../src/gmxlib/mtxio.c:164:13: warning: variable 'xd' set but not used [-Wunused-but-set-variable]
     XDR *   xd;
             ^~
In file included from ../../../src/gmxlib/mtxio.c:48:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o pargs.lo ../../../src/gmxlib/pargs.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/pargs.c  -fPIC -DPIC -o .libs/pargs.o
../../../src/gmxlib/pargs.c: In function 'print_pargs':
../../../src/gmxlib/pargs.c:306:26: warning: unused variable 'tmp' [-Wunused-variable]
   char buf[32],buf2[256],tmp[256];
                          ^~~
../../../src/gmxlib/pargs.c:306:16: warning: unused variable 'buf2' [-Wunused-variable]
   char buf[32],buf2[256],tmp[256];
                ^~~~
../../../src/gmxlib/pargs.c:306:8: warning: unused variable 'buf' [-Wunused-variable]
   char buf[32],buf2[256],tmp[256];
        ^~~
In file included from ../../../src/gmxlib/pargs.c:51:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/pargs.c:51:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o rando.lo ../../../src/gmxlib/rando.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/rando.c  -fPIC -DPIC -o .libs/rando.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o pdbio.lo ../../../src/gmxlib/pdbio.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/pdbio.c  -fPIC -DPIC -o .libs/pdbio.o
In file included from ../../../src/gmxlib/pdbio.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/gmxlib/pdbio.c:44:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/pdbio.c:44:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
../../../src/gmxlib/pdbio.c: In function 'read_pdbfile':
../../../src/gmxlib/pdbio.c:570:23: warning: 'd' directive writing 1 byte into a region of size between 0 and 31 [-Wformat-overflow=]
   sprintf(format,"%s%%d",form2);
                       ^
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/gmxlib/pdbio.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 3 and 34 bytes into a destination of size 32
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/gmxlib/pdbio.c:574:27: warning: 'd' directive writing 1 byte into a region of size between 0 and 31 [-Wformat-overflow=]
       sprintf(format,"%s%%d",form2);
                           ^
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/gmxlib/pdbio.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 3 and 34 bytes into a destination of size 32
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o pbc.lo ../../../src/gmxlib/pbc.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/pbc.c  -fPIC -DPIC -o .libs/pbc.o
../../../src/gmxlib/pbc.c: In function 'low_set_pbc':
../../../src/gmxlib/pbc.c:272:8: warning: unused variable 'bXY' [-Wunused-variable]
   bool bXY,bUse;
        ^~~
../../../src/gmxlib/pbc.c: In function 'put_atom_in_box':
../../../src/gmxlib/pbc.c:1300:7: warning: unused variable 'i' [-Wunused-variable]
   int i,m,d;
       ^
../../../src/gmxlib/pbc.c: In function 'put_atoms_in_box':
../../../src/gmxlib/pbc.c:1314:11: warning: unused variable 'd' [-Wunused-variable]
   int i,m,d;
           ^
../../../src/gmxlib/pbc.c:1314:9: warning: unused variable 'm' [-Wunused-variable]
   int i,m,d;
         ^
In file included from ../../../src/gmxlib/pbc.c:43:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/pbc.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o random.lo ../../../src/gmxlib/random.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/random.c  -fPIC -DPIC -o .libs/random.o
../../../src/gmxlib/random.c: In function 'maxwell_speed':
../../../src/gmxlib/random.c:94:11: warning: unused variable 'i' [-Wunused-variable]
   int     i;
           ^
../../../src/gmxlib/random.c:93:12: warning: unused variable 'dummy' [-Wunused-variable]
   atom_id *dummy;
            ^~~~~
In file included from ../../../src/gmxlib/random.c:45:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/random.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nrama.lo ../../../src/gmxlib/nrama.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/nrama.c  -fPIC -DPIC -o .libs/nrama.o
../../../src/gmxlib/nrama.c: In function 'get_dih2':
../../../src/gmxlib/nrama.c:179:11: warning: unused variable 'found' [-Wunused-variable]
   int     found,**ff,thisff[NPP];
           ^~~~~
../../../src/gmxlib/nrama.c: In function 'init_rama':
../../../src/gmxlib/nrama.c:307:10: warning: unused variable 'ePBC' [-Wunused-variable]
   int    ePBC;
          ^~~~
At top level:
../../../src/gmxlib/nrama.c:176:13: warning: 'get_dih2' defined but not used [-Wunused-function]
 static void get_dih2(t_xrama *xr,t_functype functype[],
             ^~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/nrama.h:45,
                 from ../../../src/gmxlib/nrama.c:49:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
../../../src/gmxlib/nrama.c: In function 'init_rama':
../../../src/gmxlib/nrama.c:125:21: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=]
   sprintf(buf,"%s-%d",*atoms->resname[atoms->atom[ff[1]].resnr],
                     ^
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/gmxlib/nrama.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 3 or more bytes (assuming 13) into a destination of size 12
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o confio.lo ../../../src/gmxlib/confio.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/confio.c  -fPIC -DPIC -o .libs/confio.o
../../../src/gmxlib/confio.c: In function 'read_espresso_conf':
../../../src/gmxlib/confio.c:448:21: warning: unused variable 'npar' [-Wunused-variable]
   int  natoms,level,npar,r,nprop,p,i,m;
                     ^~~~
../../../src/gmxlib/confio.c:448:8: warning: unused variable 'natoms' [-Wunused-variable]
   int  natoms,level,npar,r,nprop,p,i,m;
        ^~~~~~
../../../src/gmxlib/confio.c: In function 'read_stx_conf':
../../../src/gmxlib/confio.c:1298:14: warning: unused variable 'd' [-Wunused-variable]
   real       d,r1,r2;
              ^
../../../src/gmxlib/confio.c:1293:14: warning: unused variable 'buf' [-Wunused-variable]
   char       buf[256];
              ^~~
At top level:
../../../src/gmxlib/confio.c:864:13: warning: 'get_conf' defined but not used [-Wunused-function]
 static void get_conf(FILE *in, char *title, int *natoms,
             ^~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/confio.c:59:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/gmxlib/confio.c:57:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/gmxlib/confio.c:54:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/gmxlib/confio.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/confio.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
../../../src/gmxlib/confio.c: In function 'write_hconf_box':
../../../src/gmxlib/confio.c:983:20: warning: '%d' directive writing between 2 and 10 bytes into a region of size between 7 and 75 [-Wformat-overflow=]
     sprintf(format,"%%%d.%df%%%d.%df%%%d.%df"
                    ^~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/gmxlib/confio.c:984:17: note: format string is defined here
      "%%%d.%df%%%d.%df%%%d.%df%%%d.%df%%%d.%df%%%d.%df\n",
                 ^~
../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [10, 2147483647]
     sprintf(format,"%%%d.%df%%%d.%df%%%d.%df"
                    ^~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [5, 2147483647]
../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [10, 2147483647]
../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [5, 2147483647]
../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [10, 2147483647]
../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [5, 2147483647]
../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [10, 2147483647]
../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [5, 2147483647]
../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [10, 2147483647]
../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [5, 2147483647]
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/gmxlib/confio.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 56 and 209 bytes into a destination of size 100
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_random.lo ../../../src/gmxlib/gmx_random.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/gmx_random.c  -fPIC -DPIC -o .libs/gmx_random.o
../../../src/gmxlib/gmx_random.c: In function 'gmx_rng_make_seed':
../../../src/gmxlib/gmx_random.c:146:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable]
   int ret;
       ^~~
../../../src/gmxlib/gmx_random.c: In function 'gmx_rng_update':
../../../src/gmxlib/gmx_random.c:168:7: warning: variable 'mti' set but not used [-Wunused-but-set-variable]
   int mti,k;
       ^~~
../../../src/gmxlib/gmx_random.c:167:16: warning: unused variable 'lastx' [-Wunused-variable]
   unsigned int lastx,x1,x2,y,*mt;
                ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o rbin.lo ../../../src/gmxlib/rbin.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/rbin.c  -fPIC -DPIC -o .libs/rbin.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o rmpbc.lo ../../../src/gmxlib/rmpbc.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/rmpbc.c  -fPIC -DPIC -o .libs/rmpbc.o
In file included from ../../../src/gmxlib/rmpbc.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/rmpbc.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/gmxlib/rmpbc.c:45:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o replace.lo ../../../src/gmxlib/replace.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/replace.c  -fPIC -DPIC -o .libs/replace.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o readinp.lo ../../../src/gmxlib/readinp.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/readinp.c  -fPIC -DPIC -o .libs/readinp.o
In file included from ../../../src/gmxlib/readinp.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o shift_util.lo ../../../src/gmxlib/shift_util.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/shift_util.c  -fPIC -DPIC -o .libs/shift_util.o
../../../src/gmxlib/shift_util.c: In function 'shift_LRcorrection':
../../../src/gmxlib/shift_util.c:257:10: warning: unused variable 'shift' [-Wunused-variable]
   ivec   shift;
          ^~~~~
../../../src/gmxlib/shift_util.c:253:42: warning: unused variable 'qtot' [-Wunused-variable]
   real   qi,dr,dr2,dr_1,dr_3,fscal,Vexcl,qtot=0;
                                          ^~~~
../../../src/gmxlib/shift_util.c:252:10: warning: unused variable 'isp' [-Wunused-variable]
   double isp=0.564189583547756;
          ^~~
At top level:
../../../src/gmxlib/shift_util.c:370:13: warning: 'rgbset' defined but not used [-Wunused-function]
 static real rgbset(real col)
             ^~~~~~
In file included from ../../../src/gmxlib/shift_util.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/shift_util.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o smalloc.lo ../../../src/gmxlib/smalloc.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/smalloc.c  -fPIC -DPIC -o .libs/smalloc.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o strdb.lo ../../../src/gmxlib/strdb.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/strdb.c  -fPIC -DPIC -o .libs/strdb.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o statutil.lo ../../../src/gmxlib/statutil.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/statutil.c  -fPIC -DPIC -o .libs/statutil.o
../../../src/gmxlib/statutil.c: In function 'check_times2':
../../../src/gmxlib/statutil.c:152:8: warning: variable 'margin' set but not used [-Wunused-but-set-variable]
   real margin;
        ^~~~~~
../../../src/gmxlib/statutil.c: In function 'parse_common_args':
../../../src/gmxlib/statutil.c:528:14: warning: unused variable 'newdesc' [-Wunused-variable]
   char *ptr,*newdesc;
              ^~~~~~~
../../../src/gmxlib/statutil.c:528:9: warning: unused variable 'ptr' [-Wunused-variable]
   char *ptr,*newdesc;
         ^~~
../../../src/gmxlib/statutil.c:491:11: warning: unused variable 'npri_pa' [-Wunused-variable]
   t_pargs npri_pa   = { "-npri", FALSE, etINT,   {&npri},
           ^~~~~~~
../../../src/gmxlib/statutil.c:485:27: warning: unused variable 'mantp' [-Wunused-variable]
   static int  nicelevel=0,mantp=0,npri=0,debug_level=0;
                           ^~~~~
At top level:
../../../src/gmxlib/statutil.c:485:27: warning: 'mantp' defined but not used [-Wunused-variable]
../../../src/gmxlib/statutil.c:361:13: warning: 'pdesc' defined but not used [-Wunused-function]
 static void pdesc(char *desc)
             ^~~~~
../../../src/gmxlib/statutil.c:73:14: warning: 'timelabel' defined but not used [-Wunused-variable]
 static char *timelabel     = NULL;
              ^~~~~~~~~
In file included from ../../../src/gmxlib/statutil.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/statutil.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/statutil.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o mtop_util.lo ../../../src/gmxlib/mtop_util.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/mtop_util.c  -fPIC -DPIC -o .libs/mtop_util.o
../../../src/gmxlib/mtop_util.c: In function 'gmx_mtop_atomnr_to_molblock_ind':
../../../src/gmxlib/mtop_util.c:105:14: warning: unused variable 'atoms' [-Wunused-variable]
     t_atoms *atoms;
              ^~~~~
../../../src/gmxlib/mtop_util.c: In function 'gmx_mtop_atominfo_global':
../../../src/gmxlib/mtop_util.c:132:21: warning: unused variable 'molb' [-Wunused-variable]
     gmx_molblock_t *molb;
                     ^~~~
../../../src/gmxlib/mtop_util.c: In function 'gmx_mtop_ilistloop_all_next':
../../../src/gmxlib/mtop_util.c:384:21: warning: unused variable 'molb' [-Wunused-variable]
     gmx_molblock_t *molb;
                     ^~~~
../../../src/gmxlib/mtop_util.c: In function 'gmx_mtop_global_cgs':
../../../src/gmxlib/mtop_util.c:438:14: warning: unused variable 'atoms' [-Wunused-variable]
     t_atoms *atoms;
              ^~~~~
../../../src/gmxlib/mtop_util.c: In function 'gen_local_top':
../../../src/gmxlib/mtop_util.c:669:31: warning: unused variable 'mt' [-Wunused-variable]
     int mb,srcnr,destnr,ftype,mt,natoms,nposre_old;
                               ^~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o symtab.lo ../../../src/gmxlib/symtab.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/symtab.c  -fPIC -DPIC -o .libs/symtab.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o topsort.lo ../../../src/gmxlib/topsort.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/topsort.c  -fPIC -DPIC -o .libs/topsort.o
../../../src/gmxlib/topsort.c: In function 'gmx_sort_ilist_fe':
../../../src/gmxlib/topsort.c:142:10: warning: unused variable 'bPert' [-Wunused-variable]
     bool bPert;
          ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o princ.lo ../../../src/gmxlib/princ.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/princ.c  -fPIC -DPIC -o .libs/princ.o
../../../src/gmxlib/princ.c:249:13: warning: 'dump_shit' defined but not used [-Wunused-function]
 static void dump_shit(FILE *out,matrix trans,rvec prcomp,real totmass)
             ^~~~~~~~~
../../../src/gmxlib/princ.c:48:13: warning: 'm_op' defined but not used [-Wunused-function]
 static void m_op(matrix mat,rvec x)
             ^~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/gmxlib/princ.c:44:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/gmxlib/princ.c:42:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/princ.c:42:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o mvdata.lo ../../../src/gmxlib/mvdata.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/mvdata.c  -fPIC -DPIC -o .libs/mvdata.o
../../../src/gmxlib/mvdata.c: In function 'bc_atoms':
../../../src/gmxlib/mvdata.c:147:7: warning: unused variable 'dummy' [-Wunused-variable]
   int dummy;
       ^~~~~
../../../src/gmxlib/mvdata.c: In function 'bc_groups':
../../../src/gmxlib/mvdata.c:162:7: warning: unused variable 'dummy' [-Wunused-variable]
   int dummy;
       ^~~~~
../../../src/gmxlib/mvdata.c: In function 'bc_ffparams':
../../../src/gmxlib/mvdata.c:290:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/gmxlib/mvdata.c: In function 'bc_molblock':
../../../src/gmxlib/mvdata.c:427:8: warning: unused variable 'bAlloc' [-Wunused-variable]
   bool bAlloc=TRUE;
        ^~~~~~
At top level:
../../../src/gmxlib/mvdata.c:275:13: warning: 'bc_idef' defined but not used [-Wunused-function]
 static void bc_idef(const t_commrec *cr,t_idef *idef)
             ^~~~~~~
In file included from ../../../src/gmxlib/mvdata.c:50:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/mvdata.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o trxio.lo ../../../src/gmxlib/trxio.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/trxio.c  -fPIC -DPIC -o .libs/trxio.o
In file included from ../../../src/gmxlib/trxio.c:53:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/gmxlib/trxio.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/trxio.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/trxio.c:45:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o typedefs.lo ../../../src/gmxlib/typedefs.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/typedefs.c  -fPIC -DPIC -o .libs/typedefs.o
../../../src/gmxlib/typedefs.c: In function 'init_block':
../../../src/gmxlib/typedefs.c:64:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/gmxlib/typedefs.c: In function 'init_blocka':
../../../src/gmxlib/typedefs.c:74:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/gmxlib/typedefs.c: In function 'init_atom':
../../../src/gmxlib/typedefs.c:87:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/gmxlib/typedefs.c: In function 'init_top':
../../../src/gmxlib/typedefs.c:135:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/gmxlib/typedefs.c: In function 'done_top':
../../../src/gmxlib/typedefs.c:284:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/gmxlib/typedefs.c: In function 'init_state':
../../../src/gmxlib/typedefs.c:386:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
In file included from ../../../src/gmxlib/typedefs.c:43:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/typedefs.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o sortwater.lo ../../../src/gmxlib/sortwater.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/sortwater.c  -fPIC -DPIC -o .libs/sortwater.o
In file included from ../../../src/gmxlib/sortwater.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/sortwater.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o viewit.lo ../../../src/gmxlib/viewit.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/viewit.c  -fPIC -DPIC -o .libs/viewit.o
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/viewit.c:42:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o xdrd.lo ../../../src/gmxlib/xdrd.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/xdrd.c  -fPIC -DPIC -o .libs/xdrd.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o writeps.lo ../../../src/gmxlib/writeps.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/writeps.c  -fPIC -DPIC -o .libs/writeps.o
In file included from ../../../src/gmxlib/writeps.c:43:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o wgms.lo ../../../src/gmxlib/wgms.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/wgms.c  -fPIC -DPIC -o .libs/wgms.o
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/gmxlib/wgms.c:41:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o string2.lo ../../../src/gmxlib/string2.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/string2.c  -fPIC -DPIC -o .libs/string2.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o trnio.lo ../../../src/gmxlib/trnio.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/trnio.c  -fPIC -DPIC -o .libs/trnio.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o xtcio.lo ../../../src/gmxlib/xtcio.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/xtcio.c  -fPIC -DPIC -o .libs/xtcio.o
In file included from ../../../src/gmxlib/xtcio.c:46:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/xtcio.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o xvgr.lo ../../../src/gmxlib/xvgr.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/xvgr.c  -fPIC -DPIC -o .libs/xvgr.o
../../../src/gmxlib/xvgr.c: In function 'use_xmgr':
../../../src/gmxlib/xvgr.c:56:8: warning: unused variable 'bXMGR' [-Wunused-variable]
   bool bXMGR;
        ^~~~~
../../../src/gmxlib/xvgr.c: In function 'read_xvg_time':
../../../src/gmxlib/xvgr.c:402:14: warning: unused variable 'tend' [-Wunused-variable]
   double dbl,tend=0;
              ^~~~
In file included from ../../../src/gmxlib/xvgr.c:50:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/xvgr.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/gmxlib/xvgr.c:46:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/xvgr.c:45:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dihres.lo ../../../src/gmxlib/dihres.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/dihres.c  -fPIC -DPIC -o .libs/dihres.o
../../../src/gmxlib/dihres.c: In function 'ta_dihres':
../../../src/gmxlib/dihres.c:77:30: warning: unused variable 'dp2' [-Wunused-variable]
   real phi0,phi,ddphi,ddp,dp,dp2,dphi,kfac,cos_phi,sign,d2r,fc;
                              ^~~
../../../src/gmxlib/dihres.c:76:29: warning: unused variable 'typep' [-Wunused-variable]
   int  ai,aj,ak,al,i,k,type,typep,label,power,t1,t2,t3;
                             ^~~~~
In file included from ../../../src/gmxlib/dihres.c:51:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/gmxlib/dihres.c:46:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/dihres.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o txtdump.lo ../../../src/gmxlib/txtdump.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/txtdump.c  -fPIC -DPIC -o .libs/txtdump.o
../../../src/gmxlib/txtdump.c: In function 'pr_qm_opts':
../../../src/gmxlib/txtdump.c:339:11: warning: unused variable 'j' [-Wunused-variable]
   int i,m,j;
           ^
../../../src/gmxlib/txtdump.c:339:9: warning: unused variable 'm' [-Wunused-variable]
   int i,m,j;
         ^
../../../src/gmxlib/txtdump.c:339:7: warning: unused variable 'i' [-Wunused-variable]
   int i,m,j;
       ^
../../../src/gmxlib/txtdump.c: In function 'pr_ffparams':
../../../src/gmxlib/txtdump.c:906:9: warning: unused variable 'j' [-Wunused-variable]
   int i,j;
         ^
../../../src/gmxlib/txtdump.c: In function 'pr_block_title':
../../../src/gmxlib/txtdump.c:950:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/gmxlib/txtdump.c: In function 'pr_blocka_title':
../../../src/gmxlib/txtdump.c:963:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/gmxlib/txtdump.c: In function 'pr_block':
../../../src/gmxlib/txtdump.c:1016:9: warning: unused variable 'j' [-Wunused-variable]
   int i,j,ok,size,start,end;
         ^
../../../src/gmxlib/txtdump.c: In function 'pr_atom':
../../../src/gmxlib/txtdump.c:1120:9: warning: unused variable 'j' [-Wunused-variable]
   int i,j;
         ^
../../../src/gmxlib/txtdump.c: In function 'pr_groups':
../../../src/gmxlib/txtdump.c:1151:9: warning: unused variable 'grpnr' [-Wunused-variable]
     int grpnr[egcNR];
         ^~~~~
At top level:
../../../src/gmxlib/txtdump.c:976:13: warning: 'low_pr_block' defined but not used [-Wunused-function]
 static void low_pr_block(FILE *fp,int indent,const char *title,t_block *block, bool bShowNumbers)
             ^~~~~~~~~~~~
In file included from ../../../src/gmxlib/txtdump.c:51:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/txtdump.c:51:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o tcontrol.lo ../../../src/gmxlib/tcontrol.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/tcontrol.c  -fPIC -DPIC -o .libs/tcontrol.o
../../../src/gmxlib/tcontrol.c:61:22: warning: 'timeconvert' defined but not used [-Wunused-variable]
 static t_timeconvert timeconvert[] = {
                      ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/tcontrol.c:41:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_cyclecounter.lo ../../../src/gmxlib/gmx_cyclecounter.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/gmx_cyclecounter.c  -fPIC -DPIC -o .libs/gmx_cyclecounter.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o wman.lo ../../../src/gmxlib/wman.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/wman.c  -fPIC -DPIC -o .libs/wman.o
../../../src/gmxlib/wman.c: In function 'mydate':
../../../src/gmxlib/wman.c:168:15: warning: unused variable 'num' [-Wunused-variable]
   const char *num[] = { "01", "02", "03", "04", "05", "06","07", "08", "09" };
               ^~~
../../../src/gmxlib/wman.c: In function 'print_tty_formatted':
../../../src/gmxlib/wman.c:510:16: warning: unused variable 'j' [-Wunused-variable]
   int buflen,i,j;
                ^
../../../src/gmxlib/wman.c: In function 'write_wikiman':
../../../src/gmxlib/wman.c:631:14: warning: unused variable 'tmp2' [-Wunused-variable]
   char *tmp,*tmp2;
              ^~~~
../../../src/gmxlib/wman.c:630:17: warning: unused variable 'link' [-Wunused-variable]
   char buf[256],link[10];
                 ^~~~
../../../src/gmxlib/wman.c: In function 'write_htmlman':
../../../src/gmxlib/wman.c:682:8: warning: unused variable 'link' [-Wunused-variable]
   char link[10],tmp[255];
        ^~~~
../../../src/gmxlib/wman.c: In function 'write_xmlman':
../../../src/gmxlib/wman.c:788:7: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
       if (strcmp(link,"???")==0)
       ^~
../../../src/gmxlib/wman.c:790:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
         if (fnm[i].opt[0]=='-') strcpy(opt,fnm[i].opt+1);
         ^~
../../../src/gmxlib/wman.c: In function 'write_py':
../../../src/gmxlib/wman.c:925:8: warning: unused variable 'bHidden' [-Wunused-variable]
   bool bHidden;
        ^~~~~~~
In file included from ../../../src/gmxlib/wman.c:48:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o tpxio.lo ../../../src/gmxlib/tpxio.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/tpxio.c  -fPIC -DPIC -o .libs/tpxio.o
../../../src/gmxlib/tpxio.c: In function 'do_ilist':
../../../src/gmxlib/tpxio.c:987:10: warning: unused variable 'k' [-Wunused-variable]
   int  i,k,idum;
          ^
../../../src/gmxlib/tpxio.c: In function 'do_ffparams':
../../../src/gmxlib/tpxio.c:1008:15: warning: unused variable 'j' [-Wunused-variable]
   int  idum,i,j,k;
               ^
../../../src/gmxlib/tpxio.c: In function 'do_ilists':
../../../src/gmxlib/tpxio.c:1061:8: warning: unused variable 'bDum' [-Wunused-variable]
   bool bDum=TRUE,bClear;
        ^~~~
../../../src/gmxlib/tpxio.c:1060:13: warning: unused variable 'renum' [-Wunused-variable]
   int i,j,k,renum[F_NRE];
             ^~~~~
../../../src/gmxlib/tpxio.c:1060:7: warning: unused variable 'i' [-Wunused-variable]
   int i,j,k,renum[F_NRE];
       ^
../../../src/gmxlib/tpxio.c: In function 'do_groups':
../../../src/gmxlib/tpxio.c:1276:10: warning: unused variable 'n' [-Wunused-variable]
   int  g,n,i;
          ^
../../../src/gmxlib/tpxio.c: In function 'do_moltype':
../../../src/gmxlib/tpxio.c:1393:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/gmxlib/tpxio.c: In function 'do_molblock':
../../../src/gmxlib/tpxio.c:1420:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/gmxlib/tpxio.c: In function 'do_mtop':
../../../src/gmxlib/tpxio.c:1547:14: warning: unused variable 'i' [-Wunused-variable]
   int  mt,mb,i;
              ^
../../../src/gmxlib/tpxio.c: In function 'read_tpx_top':
../../../src/gmxlib/tpxio.c:2005:15: warning: unused variable 'ltop' [-Wunused-variable]
   t_topology *ltop;
               ^~~~
../../../src/gmxlib/tpxio.c: In function 'read_tps_conf':
../../../src/gmxlib/tpxio.c:2035:17: warning: unused variable 'topconv' [-Wunused-variable]
   t_topology   *topconv;
                 ^~~~~~~
In file included from ../../../src/gmxlib/tpxio.c:61:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/tpxio.c:61:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/gmxlib/tpxio.c:60:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o splitter.lo ../../../src/gmxlib/splitter.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/splitter.c  -fPIC -DPIC -o .libs/splitter.o
../../../src/gmxlib/splitter.c: In function 'split_force2':
../../../src/gmxlib/splitter.c:112:17: warning: variable 'type' set but not used [-Wunused-but-set-variable]
   int     i,j,k,type,nodeid,nratoms,tnr;
                 ^~~~
../../../src/gmxlib/splitter.c:112:13: warning: unused variable 'j' [-Wunused-variable]
   int     i,j,k,type,nodeid,nratoms,tnr;
             ^
../../../src/gmxlib/splitter.c: In function 'mk_border':
../../../src/gmxlib/splitter.c:244:14: warning: unused variable 'j' [-Wunused-variable]
   int      i,j,is,ic,ns,nc,nbor;
              ^
../../../src/gmxlib/splitter.c: In function 'split_blocks':
../../../src/gmxlib/splitter.c:316:11: warning: unused variable 'bSHK' [-Wunused-variable]
   bool    bSHK;
           ^~~~
../../../src/gmxlib/splitter.c:312:19: warning: unused variable 'last_shk' [-Wunused-variable]
   int      nodeid,last_shk,nbor;
                   ^~~~~~~~
../../../src/gmxlib/splitter.c:311:17: warning: unused variable 'ai' [-Wunused-variable]
   int      i,ii,ai,b0,b1;
                 ^~
../../../src/gmxlib/splitter.c:311:14: warning: unused variable 'ii' [-Wunused-variable]
   int      i,ii,ai,b0,b1;
              ^~
../../../src/gmxlib/splitter.c: In function 'merge_sid':
../../../src/gmxlib/splitter.c:556:8: warning: unused variable 'nChanged' [-Wunused-variable]
   int  nChanged;
        ^~~~~~~~
../../../src/gmxlib/splitter.c: In function 'gen_sblocks':
../../../src/gmxlib/splitter.c:654:11: warning: unused variable 'isid' [-Wunused-variable]
   int     isid,nsid;
           ^~~~
../../../src/gmxlib/splitter.c:652:27: warning: unused variable 'n' [-Wunused-variable]
   int     i,i0,j,k,istart,n;
                           ^
../../../src/gmxlib/splitter.c:652:20: warning: unused variable 'istart' [-Wunused-variable]
   int     i,i0,j,k,istart,n;
                    ^~~~~~
../../../src/gmxlib/splitter.c:652:18: warning: unused variable 'k' [-Wunused-variable]
   int     i,i0,j,k,istart,n;
                  ^
../../../src/gmxlib/splitter.c:652:16: warning: unused variable 'j' [-Wunused-variable]
   int     i,i0,j,k,istart,n;
                ^
../../../src/gmxlib/splitter.c: In function 'split_top':
../../../src/gmxlib/splitter.c:755:21: warning: unused variable 'minidx' [-Wunused-variable]
   int minhome,ihome,minidx;
                     ^~~~~~
../../../src/gmxlib/splitter.c:755:15: warning: unused variable 'ihome' [-Wunused-variable]
   int minhome,ihome,minidx;
               ^~~~~
../../../src/gmxlib/splitter.c:755:7: warning: unused variable 'minhome' [-Wunused-variable]
   int minhome,ihome,minidx;
       ^~~~~~~
../../../src/gmxlib/splitter.c:754:14: warning: unused variable 'ia' [-Wunused-variable]
   t_iatom   *ia;
              ^~
../../../src/gmxlib/splitter.c:753:31: warning: unused variable 'nrd' [-Wunused-variable]
   int ftype,nvsite_constr,nra,nrd;
                               ^~~
../../../src/gmxlib/splitter.c:753:27: warning: unused variable 'nra' [-Wunused-variable]
   int ftype,nvsite_constr,nra,nrd;
                           ^~~
../../../src/gmxlib/splitter.c:753:13: warning: unused variable 'nvsite_constr' [-Wunused-variable]
   int ftype,nvsite_constr,nra,nrd;
             ^~~~~~~~~~~~~
../../../src/gmxlib/splitter.c:753:7: warning: unused variable 'ftype' [-Wunused-variable]
   int ftype,nvsite_constr,nra,nrd;
       ^~~~~
../../../src/gmxlib/splitter.c:748:59: warning: unused variable 'nodeid' [-Wunused-variable]
   int     natoms,i,j,k,mj,atom,maxatom,sstart,send,bstart,nodeid;
                                                           ^~~~~~
../../../src/gmxlib/splitter.c:748:52: warning: unused variable 'bstart' [-Wunused-variable]
   int     natoms,i,j,k,mj,atom,maxatom,sstart,send,bstart,nodeid;
                                                    ^~~~~~
../../../src/gmxlib/splitter.c:748:47: warning: unused variable 'send' [-Wunused-variable]
   int     natoms,i,j,k,mj,atom,maxatom,sstart,send,bstart,nodeid;
                                               ^~~~
../../../src/gmxlib/splitter.c:748:40: warning: unused variable 'sstart' [-Wunused-variable]
   int     natoms,i,j,k,mj,atom,maxatom,sstart,send,bstart,nodeid;
                                        ^~~~~~
../../../src/gmxlib/splitter.c:748:32: warning: unused variable 'maxatom' [-Wunused-variable]
   int     natoms,i,j,k,mj,atom,maxatom,sstart,send,bstart,nodeid;
                                ^~~~~~~
../../../src/gmxlib/splitter.c:748:18: warning: unused variable 'i' [-Wunused-variable]
   int     natoms,i,j,k,mj,atom,maxatom,sstart,send,bstart,nodeid;
                  ^
At top level:
../../../src/gmxlib/splitter.c:726:17: warning: 'block2blocka' defined but not used [-Wunused-function]
 static t_blocka block2blocka(t_block *block)
                 ^~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o libxdrf.lo ../../../src/gmxlib/libxdrf.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/libxdrf.c  -fPIC -DPIC -o .libs/libxdrf.o
In file included from ../../../include/xdrf.h:41,
                 from ../../../src/gmxlib/libxdrf.c:46:
../../../src/gmxlib/libxdrf.c:145:10: warning: return type defaults to 'int' [-Wimplicit-int]
 F77_FUNC(xdrfshort,XDRFSHORT)(int *xdrid, short *sp, int *ret)
          ^~~~~~~~~
../../src/config.h:28:29: note: in definition of macro 'F77_FUNC'
 #define F77_FUNC(name,NAME) name ## _
                             ^~~~
../../../src/gmxlib/libxdrf.c: In function 'xdr3dfcoord':
../../../src/gmxlib/libxdrf.c:705:9: warning: unused variable 'rc' [-Wunused-variable]
     int rc;
         ^~
../../../src/gmxlib/libxdrf.c: In function 'xtc_get_next_frame_start':
../../../src/gmxlib/libxdrf.c:1374:9: warning: unused variable 'inp' [-Wunused-variable]
     int inp;
         ^~~
../../../src/gmxlib/libxdrf.c: In function 'xdr_xtc_seek_time':
../../../src/gmxlib/libxdrf.c:1522:9: warning: unused variable 'res' [-Wunused-variable]
     int res;
         ^~~
../../../src/gmxlib/libxdrf.c: In function 'xtc_get_last_frame_number':
../../../src/gmxlib/libxdrf.c:1691:9: warning: unused variable 'res' [-Wunused-variable]
     int res;
         ^~~
../../../src/gmxlib/libxdrf.c: In function 'xdrfshort_':
../../../src/gmxlib/libxdrf.c:149:1: warning: control reaches end of non-void function [-Wreturn-type]
 }
 ^
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/libxdrf.c:45:
At top level:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_arpack.lo ../../../src/gmxlib/gmx_arpack.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/gmx_arpack.c  -fPIC -DPIC -o .libs/gmx_arpack.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -version-info 5:0:0 -lgslcblas  -o libgmx.la -rpath /usr/lib 3dview.lo atomprop.lo bondfree.lo calcgrid.lo calch.lo checkpoint.lo confio.lo copyrite.lo disre.lo do_fit.lo enxio.lo ewald_util.lo gmx_fatal.lo ffscanf.lo filenm.lo futil.lo gbutil.lo gmxfio.lo ifunc.lo index.lo cinvsqrtdata.lo invblock.lo macros.lo orires.lo sparsematrix.lo main.lo maths.lo matio.lo mshift.lo mtop_util.lo mtxio.lo mvdata.lo names.lo network.lo nrama.lo nrjac.lo nrnb.lo pargs.lo pbc.lo pdbio.lo princ.lo rando.lo random.lo gmx_random.lo rbin.lo readinp.lo replace.lo rmpbc.lo shift_util.lo sortwater.lo smalloc.lo statutil.lo strdb.lo string2.lo symtab.lo topsort.lo tpxio.lo trnio.lo trxio.lo txtdump.lo typedefs.lo viewit.lo wgms.lo wman.lo writeps.lo xdrd.lo xtcio.lo xvgr.lo libxdrf.lo gmx_arpack.lo dihres.lo tcontrol.lo splitter.lo gmx_cyclecounter.lo nonbonded/libnonbonded.la gmx_blas/libblas.la        gmx_lapack/liblapack.la -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
i586-alt-linux-gcc -shared  .libs/3dview.o .libs/atomprop.o .libs/bondfree.o .libs/calcgrid.o .libs/calch.o .libs/checkpoint.o .libs/confio.o .libs/copyrite.o .libs/disre.o .libs/do_fit.o .libs/enxio.o .libs/ewald_util.o .libs/gmx_fatal.o .libs/ffscanf.o .libs/filenm.o .libs/futil.o .libs/gbutil.o .libs/gmxfio.o .libs/ifunc.o .libs/index.o .libs/cinvsqrtdata.o .libs/invblock.o .libs/macros.o .libs/orires.o .libs/sparsematrix.o .libs/main.o .libs/maths.o .libs/matio.o .libs/mshift.o .libs/mtop_util.o .libs/mtxio.o .libs/mvdata.o .libs/names.o .libs/network.o .libs/nrama.o .libs/nrjac.o .libs/nrnb.o .libs/pargs.o .libs/pbc.o .libs/pdbio.o .libs/princ.o .libs/rando.o .libs/random.o .libs/gmx_random.o .libs/rbin.o .libs/readinp.o .libs/replace.o .libs/rmpbc.o .libs/shift_util.o .libs/sortwater.o .libs/smalloc.o .libs/statutil.o .libs/strdb.o .libs/string2.o .libs/symtab.o .libs/topsort.o .libs/tpxio.o .libs/trnio.o .libs/trxio.o .libs/txtdump.o .libs/typedefs.o .libs/viewit.o .libs/wgms.o .libs/wman.o .libs/writeps.o .libs/xdrd.o .libs/xtcio.o .libs/xvgr.o .libs/libxdrf.o .libs/gmx_arpack.o .libs/dihres.o .libs/tcontrol.o .libs/splitter.o .libs/gmx_cyclecounter.o -Wl,--whole-archive nonbonded/.libs/libnonbonded.a gmx_blas/.libs/libblas.a gmx_lapack/.libs/liblapack.a -Wl,--no-whole-archive  -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lgslcblas -lgsl -lfftw3f -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath  -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wl,-soname -Wl,libgmx.so.5 -o .libs/libgmx.so.5.0.0
(cd .libs && rm -f libgmx.so.5 && ln -s libgmx.so.5.0.0 libgmx.so.5)
(cd .libs && rm -f libgmx.so && ln -s libgmx.so.5.0.0 libgmx.so)
creating libgmx.la
(cd .libs && rm -f libgmx.la && ln -s ../libgmx.la libgmx.la)
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
Making all in mdlib
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o domdec_network.lo ../../../src/mdlib/domdec_network.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/domdec_network.c  -fPIC -DPIC -o .libs/domdec_network.o
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o calcvir.lo ../../../src/mdlib/calcvir.c
mkdir .libs
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/calcvir.c  -fPIC -DPIC -o .libs/calcvir.o
../../../src/mdlib/calcvir.c:160:13: warning: 'lo_fcv2' defined but not used [-Wunused-function]
 static void lo_fcv2(int i0,int i1,
             ^~~~~~~
../../../src/mdlib/calcvir.c:47:13: warning: 'dprod1' defined but not used [-Wunused-function]
 static void dprod1(rvec vir,real x,rvec f)
             ^~~~~~
In file included from ../../../src/mdlib/calcvir.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/calcvir.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/mdlib/calcvir.c:42:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o calcmu.lo ../../../src/mdlib/calcmu.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/calcmu.c  -fPIC -DPIC -o .libs/calcmu.o
In file included from ../../../src/mdlib/calcmu.c:45:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/calcmu.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o ebin.lo ../../../src/mdlib/ebin.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/ebin.c  -fPIC -DPIC -o .libs/ebin.o
../../../src/mdlib/ebin.c: In function 'add_ebin':
../../../src/mdlib/ebin.c:89:18: warning: unused variable 'sigma' [-Wunused-variable]
   double   e,sum,sigma,invmm,diff;
                  ^~~~~
../../../src/mdlib/ebin.c:89:14: warning: unused variable 'sum' [-Wunused-variable]
   double   e,sum,sigma,invmm,diff;
              ^~~
In file included from ../../../src/mdlib/ebin.c:51:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/mdlib/ebin.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o domdec_setup.lo ../../../src/mdlib/domdec_setup.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/domdec_setup.c  -fPIC -DPIC -o .libs/domdec_setup.o
../../../src/mdlib/domdec_setup.c: In function 'guess_npme':
../../../src/mdlib/domdec_setup.c:83:13: warning: unused variable 'try' [-Wunused-variable]
  t_inputrec try;
             ^~~
../../../src/mdlib/domdec_setup.c:82:16: warning: unused variable 'nky' [-Wunused-variable]
  int  npme,nkx,nky,ndiv,*div,*mdiv,ldiv;
                ^~~
../../../src/mdlib/domdec_setup.c:82:12: warning: unused variable 'nkx' [-Wunused-variable]
  int  npme,nkx,nky,ndiv,*div,*mdiv,ldiv;
            ^~~
../../../src/mdlib/domdec_setup.c: In function 'assign_factors':
../../../src/mdlib/domdec_setup.c:329:13: warning: unused variable 'z' [-Wunused-variable]
     int x,y,z,i;
             ^
../../../src/mdlib/domdec_setup.c: In function 'dd_choose_grid':
../../../src/mdlib/domdec_setup.c:493:19: warning: unused variable 'nky' [-Wunused-variable]
     int  npme,nkx,nky;
                   ^~~
../../../src/mdlib/domdec_setup.c:493:15: warning: unused variable 'nkx' [-Wunused-variable]
     int  npme,nkx,nky;
               ^~~
../../../src/mdlib/domdec_setup.c:493:10: warning: unused variable 'npme' [-Wunused-variable]
     int  npme,nkx,nky;
          ^~~~
In file included from ../../../src/mdlib/domdec_setup.c:32:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/domdec_setup.c:32:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/pme.h:46,
                 from ../../../src/mdlib/domdec_setup.c:29:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o fftgrid.lo ../../../src/mdlib/fftgrid.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/fftgrid.c  -fPIC -DPIC -o .libs/fftgrid.o
../../../src/mdlib/fftgrid.c: In function 'mk_fftgrid':
../../../src/mdlib/fftgrid.c:97:25: warning: unused variable 'maxlocalsize' [-Wunused-variable]
     int           x1,y1,maxlocalsize;
                         ^~~~~~~~~~~~
In file included from ../../../include/fftgrid.h:46,
                 from ../../../src/mdlib/fftgrid.c:51:
At top level:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o coupling.lo ../../../src/mdlib/coupling.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/coupling.c  -fPIC -DPIC -o .libs/coupling.o
../../../src/mdlib/coupling.c: In function 'berendsen_pcoupl':
../../../src/mdlib/coupling.c:267:11: warning: unused variable 'ptr' [-Wunused-variable]
   char   *ptr,buf[STRLEN];
           ^~~
In file included from ../../../include/pull.h:44,
                 from ../../../include/update.h:49,
                 from ../../../src/mdlib/coupling.c:42:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../include/pull.h:44,
                 from ../../../include/update.h:49,
                 from ../../../src/mdlib/coupling.c:42:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/update.h:48,
                 from ../../../src/mdlib/coupling.c:42:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o domdec_top.lo ../../../src/mdlib/domdec_top.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/domdec_top.c  -fPIC -DPIC -o .libs/domdec_top.o
../../../src/mdlib/domdec_top.c: In function 'print_missing_interactions_mb':
../../../src/mdlib/domdec_top.c:113:56: warning: unused variable 'a_gl' [-Wunused-variable]
     int ftype,ftype_j,nral,i,j_mol,j,k,a0,a0_mol,mol,a,a_gl;
                                                        ^~~~
../../../src/mdlib/domdec_top.c:113:38: warning: unused variable 'k' [-Wunused-variable]
     int ftype,ftype_j,nral,i,j_mol,j,k,a0,a0_mol,mol,a,a_gl;
                                      ^
../../../src/mdlib/domdec_top.c: In function 'global_atomnr_to_moltype_ind':
../../../src/mdlib/domdec_top.c:349:7: warning: unused variable 'molb' [-Wunused-variable]
   int molb;
       ^~~~
../../../src/mdlib/domdec_top.c: In function 'count_excls':
../../../src/mdlib/domdec_top.c:364:11: warning: unused variable 'n_inter' [-Wunused-variable]
     int n,n_inter,cg,at0,at1,at,excl,atj;
           ^~~~~~~
../../../src/mdlib/domdec_top.c: In function 'dd_make_reverse_top':
../../../src/mdlib/domdec_top.c:611:19: warning: unused variable 'n_recursive_vsite' [-Wunused-variable]
     int mb,natoms,n_recursive_vsite,nexcl,nexcl_icg,a;
                   ^~~~~~~~~~~~~~~~~
../../../src/mdlib/domdec_top.c: In function 'add_vsite':
../../../src/mdlib/domdec_top.c:760:37: warning: unused variable 'iatoms_r' [-Wunused-variable]
     t_iatom tiatoms[1+MAXATOMLIST],*iatoms_r;
                                     ^~~~~~~~
../../../src/mdlib/domdec_top.c: In function 'dd_make_local_top':
../../../src/mdlib/domdec_top.c:1408:10: warning: unused variable 'bUniqueExcl' [-Wunused-variable]
     bool bUniqueExcl,bRCheckMB,bRCheck2B,bRCheckExcl;
          ^~~~~~~~~~~
../../../src/mdlib/domdec_top.c: In function 'check_link':
../../../src/mdlib/domdec_top.c:1590:12: warning: unused variable 'aj' [-Wunused-variable]
     int  k,aj;
            ^~
In file included from ../../../src/mdlib/domdec_top.c:31:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/domdec_top.c:31:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o ewald.lo ../../../src/mdlib/ewald.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/ewald.c  -fPIC -DPIC -o .libs/ewald.o
In file included from ../../../src/mdlib/ewald.c:44:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/mdlib/ewald.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/ewald.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o constr.lo ../../../src/mdlib/constr.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/constr.c  -fPIC -DPIC -o .libs/constr.o
../../../src/mdlib/constr.c: In function 'too_many_constraint_warnings':
../../../src/mdlib/constr.c:132:9: warning: unused variable 'abort' [-Wunused-variable]
   char *abort="- aborting to avoid logfile runaway.\n"
         ^~~~~
../../../src/mdlib/constr.c: In function 'constrain':
../../../src/mdlib/constr.c:234:11: warning: unused variable 'ncons' [-Wunused-variable]
   int     ncons,error;
           ^~~~~
../../../src/mdlib/constr.c: In function 'init_constraints':
../../../src/mdlib/constr.c:772:37: warning: unused variable 'natoms' [-Wunused-variable]
   int  ncon,nset,nmol,settle_type,i,natoms,mt,nflexcon;
                                     ^~~~~~
../../../src/mdlib/constr.c: In function 'inter_charge_group_constraints':
../../../src/mdlib/constr.c:903:8: warning: unused variable 'nat' [-Wunused-variable]
   int  nat,*at2cg,cg,a,i;
        ^~~
At top level:
../../../src/mdlib/constr.c:110:12: warning: 'icomp' defined but not used [-Wunused-function]
 static int icomp(const void *p1, const void *p2)
            ^~~~~
In file included from ../../../src/mdlib/constr.c:53:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
In file included from ../../../include/pull.h:44,
                 from ../../../include/mdrun.h:56,
                 from ../../../src/mdlib/constr.c:45:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../include/pull.h:44,
                 from ../../../include/mdrun.h:56,
                 from ../../../src/mdlib/constr.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/mdrun.h:50,
                 from ../../../src/mdlib/constr.c:45:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/constr.c:42:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o ghat.lo ../../../src/mdlib/ghat.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/ghat.c  -fPIC -DPIC -o .libs/ghat.o
In file included from ../../../include/pppm.h:46,
                 from ../../../src/mdlib/ghat.c:47:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/mdlib/ghat.c:44:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/ghat.c:44:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o domdec_con.lo ../../../src/mdlib/domdec_con.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/domdec_con.c  -fPIC -DPIC -o .libs/domdec_con.o
../../../src/mdlib/domdec_con.c: In function 'dd_make_local_vsites':
../../../src/mdlib/domdec_con.c:925:25: warning: unused variable 'gat' [-Wunused-variable]
     int  ftype,nral,i,j,gat,a;
                         ^~~
../../../src/mdlib/domdec_con.c: In function 'init_domdec_vsites':
../../../src/mdlib/domdec_con.c:1047:31: warning: unused variable 'dc' [-Wunused-variable]
     gmx_domdec_constraints_t *dc;
                               ^~
In file included from ../../../src/mdlib/domdec_con.c:25:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/domdec_con.c:25:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o mdatom.lo ../../../src/mdlib/mdatom.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/mdatom.c  -fPIC -DPIC -o .libs/mdatom.o
../../../src/mdlib/mdatom.c: In function 'init_mdatoms':
../../../src/mdlib/mdatom.c:56:12: warning: unused variable 'ilist' [-Wunused-variable]
   t_ilist *ilist;
            ^~~~~
../../../src/mdlib/mdatom.c:51:17: warning: unused variable 'nmol' [-Wunused-variable]
   int    mb,a,g,nmol;
                 ^~~~
../../../src/mdlib/mdatom.c:51:15: warning: unused variable 'g' [-Wunused-variable]
   int    mb,a,g,nmol;
               ^
../../../src/mdlib/mdatom.c:51:10: warning: unused variable 'mb' [-Wunused-variable]
   int    mb,a,g,nmol;
          ^~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o init.lo ../../../src/mdlib/init.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/init.c  -fPIC -DPIC -o .libs/init.o
In file included from ../../../include/statutil.h:51,
                 from ../../../src/mdlib/init.c:52:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../include/mdrun.h:50,
                 from ../../../src/mdlib/init.c:51:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/init.c:44:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/init.c:44:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o mvxvf.lo ../../../src/mdlib/mvxvf.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/mvxvf.c  -fPIC -DPIC -o .libs/mvxvf.o
In file included from ../../../src/mdlib/mvxvf.c:52:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/mvxvf.c:52:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o edsam.lo ../../../src/mdlib/edsam.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/edsam.c  -fPIC -DPIC -o .libs/edsam.o
../../../src/mdlib/edsam.c:983:13: warning: 'get_flood_energies' defined but not used [-Wunused-function]
 static void get_flood_energies(t_edpar *edi, real Vfl[],int nnames)
             ^~~~~~~~~~~~~~~~~~
../../../src/mdlib/edsam.c:964:13: warning: 'get_flood_enx_names' defined but not used [-Wunused-function]
 static void get_flood_enx_names(t_edpar *edi, char** names, int *nnames)  /* get header of energies */
             ^~~~~~~~~~~~~~~~~~~
../../../src/mdlib/edsam.c:459:13: warning: 'dump_mat' defined but not used [-Wunused-function]
 static void dump_mat(FILE* out, int dim, double** mat)
             ^~~~~~~~
../../../src/mdlib/edsam.c:448:13: warning: 'dump_rvec' defined but not used [-Wunused-function]
 static void dump_rvec(FILE *out, int dim, rvec *x)
             ^~~~~~~~~
../../../src/mdlib/edsam.c:439:13: warning: 'dump_rotmat' defined but not used [-Wunused-function]
 static void dump_rotmat(FILE* out,matrix rotmat)
             ^~~~~~~~~~~
../../../src/mdlib/edsam.c:387:13: warning: 'dump_edi' defined but not used [-Wunused-function]
 static void dump_edi(t_edpar *edpars, t_commrec *cr, int nr_edi)
             ^~~~~~~~
../../../src/mdlib/edsam.c:316:13: warning: 'dump_xcoll' defined but not used [-Wunused-function]
 static void dump_xcoll(t_edpar *edi, struct t_do_edsam *buf, t_commrec *cr, int step)
             ^~~~~~~~~~
In file included from ../../../include/mdrun.h:50,
                 from ../../../src/mdlib/edsam.c:53:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/edsam.c:49:
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/edsam.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nsgrid.lo ../../../src/mdlib/nsgrid.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/nsgrid.c  -fPIC -DPIC -o .libs/nsgrid.o
../../../src/mdlib/nsgrid.c: In function 'init_grid':
../../../src/mdlib/nsgrid.c:181:10: warning: unused variable 'm' [-Wunused-variable]
   int  d,m;
          ^
../../../src/mdlib/nsgrid.c:181:8: warning: unused variable 'd' [-Wunused-variable]
   int  d,m;
        ^
../../../src/mdlib/nsgrid.c: In function 'grid_first':
../../../src/mdlib/nsgrid.c:278:10: warning: unused variable 'cx' [-Wunused-variable]
   ivec   cx;
          ^~
../../../src/mdlib/nsgrid.c: In function 'fill_grid':
../../../src/mdlib/nsgrid.c:421:10: warning: variable 'nrx' set but not used [-Wunused-but-set-variable]
   int    nrx,nry,nrz;
          ^~~
In file included from ../../../src/mdlib/nsgrid.c:47:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/nsgrid.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o perf_est.lo ../../../src/mdlib/perf_est.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/perf_est.c  -fPIC -DPIC -o .libs/perf_est.o
../../../src/mdlib/perf_est.c: In function 'n_bonded_dx':
../../../src/mdlib/perf_est.c:62:2: warning: label 'F_CONNBONDS' defined but not used [-Wunused-label]
  F_CONNBONDS: ndxb = 0; break;
  ^~~~~~~~~~~
../../../src/mdlib/perf_est.c:61:2: warning: label 'F_POSRES' defined but not used [-Wunused-label]
  F_POSRES:    ndxb = 1; break;
  ^~~~~~~~
../../../src/mdlib/perf_est.c: In function 'pme_load_estimate':
../../../src/mdlib/perf_est.c:89:21: warning: unused variable 'fljtab' [-Wunused-variable]
   float fq,fqlj,flj,fljtab,fqljw,fqw,fqspread,ffft,fbond;
                     ^~~~~~
In file included from ../../../src/mdlib/perf_est.c:41:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/perf_est.c:41:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o mdebin.lo ../../../src/mdlib/mdebin.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/mdebin.c  -fPIC -DPIC -o .libs/mdebin.o
../../../src/mdlib/mdebin.c: In function 'print_ebin':
../../../src/mdlib/mdebin.c:530:31: warning: unused variable 'nor' [-Wunused-variable]
   int         i,j,n,ni,nj,ndr,nor;
                               ^~~
../../../src/mdlib/mdebin.c:530:27: warning: unused variable 'ndr' [-Wunused-variable]
   int         i,j,n,ni,nj,ndr,nor;
                           ^~~
In file included from ../../../src/mdlib/mdebin.c:48:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/mdebin.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o force.lo ../../../src/mdlib/force.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/force.c  -fPIC -DPIC -o .libs/force.o
../../../src/mdlib/force.c: In function 'check_solvent_cg':
../../../src/mdlib/force.c:162:23: warning: unused variable 'excl' [-Wunused-variable]
     const t_blocka *  excl;
                       ^~~~
../../../src/mdlib/force.c: In function 'check_solvent':
../../../src/mdlib/force.c:406:23: warning: variable 'mols' set but not used [-Wunused-but-set-variable]
     const t_block *   mols;
                       ^~~~
../../../src/mdlib/force.c: In function 'set_avcsixtwelve':
../../../src/mdlib/force.c:687:46: warning: unused variable 'n' [-Wunused-variable]
     int    mb,nmol,nmolc,i,j,tpi,tpj,j1,j2,k,n,nexcl,q;
                                              ^
../../../src/mdlib/force.c: In function 'init_forcerec':
../../../src/mdlib/force.c:1048:16: warning: variable 'nbl' set but not used [-Wunused-but-set-variable]
     t_nblists *nbl;
                ^~~
../../../src/mdlib/force.c:1043:26: warning: unused variable 'ngrp' [-Wunused-variable]
     int     i,j,m,natoms,ngrp,negp_pp,negptable,egi,egj;
                          ^~~~
../../../src/mdlib/force.c:1043:15: warning: unused variable 'j' [-Wunused-variable]
     int     i,j,m,natoms,ngrp,negp_pp,negptable,egi,egj;
               ^
../../../src/mdlib/force.c: In function 'do_force_lowlevel':
../../../src/mdlib/force.c:1549:20: warning: unused variable 'timesteps' [-Wunused-variable]
     static int     timesteps=0;
                    ^~~~~~~~~
../../../src/mdlib/force.c:1548:32: warning: unused variable 't_wait' [-Wunused-variable]
     static double  t_fnbf=0.0, t_wait=0.0;
                                ^~~~~~
../../../src/mdlib/force.c:1548:20: warning: unused variable 't_fnbf' [-Wunused-variable]
     static double  t_fnbf=0.0, t_wait=0.0;
                    ^~~~~~
../../../src/mdlib/force.c:1540:13: warning: unused variable 'bDoEpot' [-Wunused-variable]
     bool    bDoEpot,bSepDVDL,bSB;
             ^~~~~~~
../../../src/mdlib/force.c:1539:15: warning: unused variable 'nit' [-Wunused-variable]
     int     i,nit,status;
               ^~~
At top level:
../../../src/mdlib/force.c:1548:20: warning: 't_fnbf' defined but not used [-Wunused-variable]
     static double  t_fnbf=0.0, t_wait=0.0;
                    ^~~~~~
../../../src/mdlib/force.c:1548:32: warning: 't_wait' defined but not used [-Wunused-variable]
     static double  t_fnbf=0.0, t_wait=0.0;
                                ^~~~~~
../../../src/mdlib/force.c:1549:20: warning: 'timesteps' defined but not used [-Wunused-variable]
     static int     timesteps=0;
                    ^~~~~~~~~
In file included from ../../../src/mdlib/force.c:69:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/pull.h:44,
                 from ../../../include/mdrun.h:56,
                 from ../../../src/mdlib/force.c:64:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../include/pull.h:44,
                 from ../../../include/mdrun.h:56,
                 from ../../../src/mdlib/force.c:64:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/pppm.h:46,
                 from ../../../src/mdlib/force.c:62:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o pme_pp.lo ../../../src/mdlib/pme_pp.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/pme_pp.c  -fPIC -DPIC -o .libs/pme_pp.o
../../../src/mdlib/pme_pp.c: In function 'gmx_pme_pp_init':
../../../src/mdlib/pme_pp.c:112:7: warning: unused variable 'rank' [-Wunused-variable]
   int rank;
       ^~~~
../../../src/mdlib/pme_pp.c: In function 'gmx_pme_recv_q_x':
../../../src/mdlib/pme_pp.c:261:9: warning: unused variable 'charge_pp' [-Wunused-variable]
   real *charge_pp;
         ^~~~~~~~~
../../../src/mdlib/pme_pp.c:260:25: warning: unused variable 'sender' [-Wunused-variable]
   int  nat=0,q,messages,sender;
                         ^~~~~~
../../../src/mdlib/pme_pp.c:260:16: warning: variable 'messages' set but not used [-Wunused-but-set-variable]
   int  nat=0,q,messages,sender;
                ^~~~~~~~
../../../src/mdlib/pme_pp.c:260:14: warning: unused variable 'q' [-Wunused-variable]
   int  nat=0,q,messages,sender;
              ^
../../../src/mdlib/pme_pp.c: In function 'gmx_pme_send_force_vir_ener':
../../../src/mdlib/pme_pp.c:446:7: warning: variable 'messages' set but not used [-Wunused-but-set-variable]
   int messages,ind_start,ind_end,receiver;
       ^~~~~~~~
At top level:
../../../src/mdlib/pme_pp.c:133:13: warning: 'gmx_pme_send_q_x_wait' defined but not used [-Wunused-function]
 static void gmx_pme_send_q_x_wait(gmx_domdec_t *dd)
             ^~~~~~~~~~~~~~~~~~~~~
In file included from ../../../include/pme.h:46,
                 from ../../../src/mdlib/pme_pp.c:49:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/mdlib/pme_pp.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/pme_pp.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o pppm.lo ../../../src/mdlib/pppm.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/pppm.c  -fPIC -DPIC -o .libs/pppm.o
../../../src/mdlib/pppm.c: In function 'convolution':
../../../src/mdlib/pppm.c:384:14: warning: unused variable 'jend' [-Wunused-variable]
   int jstart,jend;
              ^~~~
../../../src/mdlib/pppm.c:384:7: warning: unused variable 'jstart' [-Wunused-variable]
   int jstart,jend;
       ^~~~~~
At top level:
../../../src/mdlib/pppm.c:616:12: warning: 'gmx_pppm_opt_do' defined but not used [-Wunused-function]
 static int gmx_pppm_opt_do(FILE *log,       gmx_pme_t pme,
            ^~~~~~~~~~~~~~~
In file included from ../../../include/mdrun.h:50,
                 from ../../../src/mdlib/pppm.c:53:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../include/pppm.h:46,
                 from ../../../src/mdlib/pppm.c:51:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/mdlib/pppm.c:45:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/pppm.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o partdec.lo ../../../src/mdlib/partdec.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/partdec.c  -fPIC -DPIC -o .libs/partdec.o
../../../src/mdlib/partdec.c: In function 'pr_idef_division':
../../../src/mdlib/partdec.c:343:15: warning: variable 'nr' set but not used [-Wunused-but-set-variable]
   int i,ftype,nr,nra,m0,m1;
               ^~
../../../src/mdlib/partdec.c: In function 'create_vsitelist':
../../../src/mdlib/partdec.c:477:7: warning: unused variable 'minidx' [-Wunused-variable]
   int minidx;
       ^~~~~~
../../../src/mdlib/partdec.c: In function 'setup_parallel_vsites':
../../../src/mdlib/partdec.c:511:15: warning: unused variable 'k' [-Wunused-variable]
   int i,inr,j,k,ftype;
               ^
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o pullutil.lo ../../../src/mdlib/pullutil.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/pullutil.c  -fPIC -DPIC -o .libs/pullutil.o
../../../src/mdlib/pullutil.c: In function 'pull_set_pbcatom':
../../../src/mdlib/pullutil.c:85:9: warning: unused variable 'm' [-Wunused-variable]
   int a,m;
         ^
../../../src/mdlib/pullutil.c: In function 'pull_calc_coms':
../../../src/mdlib/pullutil.c:278:9: warning: unused variable 'xx' [-Wunused-variable]
   rvec *xx[2],x_pbc={0,0,0},dx;
         ^~
In file included from ../../../src/mdlib/pullutil.c:46:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/pullutil.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/mdlib/pullutil.c:45:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o rf_util.lo ../../../src/mdlib/rf_util.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/rf_util.c  -fPIC -DPIC -o .libs/rf_util.o
../../../src/mdlib/rf_util.c: In function 'RF_excl_correction':
../../../src/mdlib/rf_util.c:59:10: warning: unused variable 'top' [-Wunused-variable]
   int    top,i,j,j1,j2,k,ki;
          ^~~
In file included from ../../../src/mdlib/rf_util.c:46:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/rf_util.c:44:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/rf_util.c:44:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/mdlib/rf_util.c:42:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o shakef.lo ../../../src/mdlib/shakef.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/shakef.c  -fPIC -DPIC -o .libs/shakef.o
../../../src/mdlib/shakef.c: In function 'cshake':
../../../src/mdlib/shakef.c:79:19: warning: unused variable 'tjz' [-Wunused-variable]
   real    tjx,tjy,tjz;
                   ^~~
../../../src/mdlib/shakef.c:79:15: warning: unused variable 'tjy' [-Wunused-variable]
   real    tjx,tjy,tjz;
               ^~~
../../../src/mdlib/shakef.c:79:11: warning: unused variable 'tjx' [-Wunused-variable]
   real    tjx,tjy,tjz;
           ^~~
../../../src/mdlib/shakef.c:78:19: warning: unused variable 'tiz' [-Wunused-variable]
   real    tix,tiy,tiz;
                   ^~~
../../../src/mdlib/shakef.c:78:15: warning: unused variable 'tiy' [-Wunused-variable]
   real    tix,tiy,tiz;
               ^~~
../../../src/mdlib/shakef.c:78:11: warning: unused variable 'tix' [-Wunused-variable]
   real    tix,tiy,tiz;
           ^~~
At top level:
../../../src/mdlib/shakef.c:51:13: warning: 'pv' defined but not used [-Wunused-function]
 static void pv(FILE *log,char *s,rvec x)
             ^~
In file included from ../../../src/mdlib/shakef.c:46:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/shakef.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o pme.lo ../../../src/mdlib/pme.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/pme.c  -fPIC -DPIC -o .libs/pme.o
../../../src/mdlib/pme.c: In function 'pmeredist':
../../../src/mdlib/pme.c:380:12: warning: unused variable 'ii' [-Wunused-variable]
     int i, ii;
            ^~
../../../src/mdlib/pme.c:380:9: warning: unused variable 'i' [-Wunused-variable]
     int i, ii;
         ^
../../../src/mdlib/pme.c:379:10: warning: variable 'idxa' set but not used [-Wunused-but-set-variable]
     int *idxa;
          ^~~~
../../../src/mdlib/pme.c: In function 'gmx_sum_qgrid_dd':
../../../src/mdlib/pme.c:660:18: warning: unused variable 'to' [-Wunused-variable]
     real *from, *to;
                  ^~
../../../src/mdlib/pme.c:660:11: warning: unused variable 'from' [-Wunused-variable]
     real *from, *to;
           ^~~~
../../../src/mdlib/pme.c:659:22: warning: unused variable 'pgc' [-Wunused-variable]
     pme_grid_comm_t *pgc;
                      ^~~
../../../src/mdlib/pme.c:658:15: warning: unused variable 'localsize' [-Wunused-variable]
     int la12r,localsize;
               ^~~~~~~~~
../../../src/mdlib/pme.c:658:9: warning: unused variable 'la12r' [-Wunused-variable]
     int la12r,localsize;
         ^~~~~
../../../src/mdlib/pme.c:657:11: warning: unused variable 'i' [-Wunused-variable]
     int b,i;
           ^
../../../src/mdlib/pme.c:657:9: warning: unused variable 'b' [-Wunused-variable]
     int b,i;
         ^
../../../src/mdlib/pme.c:656:18: warning: unused variable 'tmp' [-Wunused-variable]
     static real *tmp=NULL;
                  ^~~
../../../src/mdlib/pme.c: In function 'gmx_sum_qgrid':
../../../src/mdlib/pme.c:756:16: warning: unused variable 'maxproc' [-Wunused-variable]
     static int maxproc;
                ^~~~~~~
../../../src/mdlib/pme.c:755:16: warning: unused variable 'localsize' [-Wunused-variable]
     static int localsize;
                ^~~~~~~~~
../../../src/mdlib/pme.c:754:9: warning: unused variable 'i' [-Wunused-variable]
     int i;
         ^
../../../src/mdlib/pme.c:753:18: warning: unused variable 'tmp' [-Wunused-variable]
     static real *tmp;
                  ^~~
../../../src/mdlib/pme.c:752:17: warning: unused variable 'bFirst' [-Wunused-variable]
     static bool bFirst=TRUE;
                 ^~~~~~
../../../src/mdlib/pme.c: In function 'spread_q_bsplines':
../../../src/mdlib/pme.c:840:20: warning: unused variable 'bndsize' [-Wunused-variable]
     int localsize, bndsize;
                    ^~~~~~~
../../../src/mdlib/pme.c:840:9: warning: unused variable 'localsize' [-Wunused-variable]
     int localsize, bndsize;
         ^~~~~~~~~
../../../src/mdlib/pme.c:835:16: warning: unused variable 'i' [-Wunused-variable]
     int      b,i,nn,n,*i0,*j0,*k0,*ii0,*jj0,*kk0,ithx,ithy,ithz;
                ^
../../../src/mdlib/pme.c:835:14: warning: unused variable 'b' [-Wunused-variable]
     int      b,i,nn,n,*i0,*j0,*k0,*ii0,*jj0,*kk0,ithx,ithy,ithz;
              ^
../../../src/mdlib/pme.c:834:20: warning: unused variable 'ol' [-Wunused-variable]
     pme_overlap_t *ol;
                    ^~
../../../src/mdlib/pme.c: In function 'init_atomcomm':
../../../src/mdlib/pme.c:1441:22: warning: unused variable 'pgc' [-Wunused-variable]
     pme_grid_comm_t *pgc;
                      ^~~
../../../src/mdlib/pme.c:1440:12: warning: unused variable 'nk' [-Wunused-variable]
     int nn,nk;
            ^~
../../../src/mdlib/pme.c:1440:9: warning: unused variable 'nn' [-Wunused-variable]
     int nn,nk;
         ^~
../../../src/mdlib/pme.c:1439:27: warning: unused variable 'i' [-Wunused-variable]
     int lbnd,rbnd,maxlr,b,i;
                           ^
../../../src/mdlib/pme.c:1439:25: warning: unused variable 'b' [-Wunused-variable]
     int lbnd,rbnd,maxlr,b,i;
                         ^
../../../src/mdlib/pme.c:1439:19: warning: unused variable 'maxlr' [-Wunused-variable]
     int lbnd,rbnd,maxlr,b,i;
                   ^~~~~
../../../src/mdlib/pme.c:1439:14: warning: unused variable 'rbnd' [-Wunused-variable]
     int lbnd,rbnd,maxlr,b,i;
              ^~~~
../../../src/mdlib/pme.c:1439:9: warning: unused variable 'lbnd' [-Wunused-variable]
     int lbnd,rbnd,maxlr,b,i;
         ^~~~
../../../src/mdlib/pme.c: In function 'gmx_pme_init':
../../../src/mdlib/pme.c:1541:25: warning: unused variable 'maxlr' [-Wunused-variable]
     int b,d,i,lbnd,rbnd,maxlr;
                         ^~~~~
../../../src/mdlib/pme.c:1541:20: warning: unused variable 'rbnd' [-Wunused-variable]
     int b,d,i,lbnd,rbnd,maxlr;
                    ^~~~
../../../src/mdlib/pme.c:1541:15: warning: unused variable 'lbnd' [-Wunused-variable]
     int b,d,i,lbnd,rbnd,maxlr;
               ^~~~
../../../src/mdlib/pme.c:1541:11: warning: unused variable 'd' [-Wunused-variable]
     int b,d,i,lbnd,rbnd,maxlr;
           ^
../../../src/mdlib/pme.c:1541:9: warning: unused variable 'b' [-Wunused-variable]
     int b,d,i,lbnd,rbnd,maxlr;
         ^
At top level:
../../../src/mdlib/pme.c:656:18: warning: 'tmp' defined but not used [-Wunused-variable]
     static real *tmp=NULL;
                  ^~~
../../../src/mdlib/pme.c:752:17: warning: 'bFirst' defined but not used [-Wunused-variable]
     static bool bFirst=TRUE;
                 ^~~~~~
../../../src/mdlib/pme.c:753:18: warning: 'tmp' defined but not used [-Wunused-variable]
     static real *tmp;
                  ^~~
../../../src/mdlib/pme.c:755:16: warning: 'localsize' defined but not used [-Wunused-variable]
     static int localsize;
                ^~~~~~~~~
../../../src/mdlib/pme.c:756:16: warning: 'maxproc' defined but not used [-Wunused-variable]
     static int maxproc;
                ^~~~~~~
../../../src/mdlib/pme.c:198:13: warning: 'pr_grid_dist' defined but not used [-Wunused-function]
 static void pr_grid_dist(FILE *fp,char *title,t_fftgrid *grid)
             ^~~~~~~~~~~~
In file included from ../../../src/mdlib/pme.c:81:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/pme.c:71:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/mdlib/pme.c:70:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/pme.c:70:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o ns.lo ../../../src/mdlib/ns.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/ns.c  -fPIC -DPIC -o .libs/ns.o
../../../src/mdlib/ns.c: In function 'new_i_nblist':
../../../src/mdlib/ns.c:394:20: warning: unused variable 'nshift' [-Wunused-variable]
     int    i,k,nri,nshift;
                    ^~~~~~
../../../src/mdlib/ns.c:394:14: warning: unused variable 'k' [-Wunused-variable]
     int    i,k,nri,nshift;
              ^
../../../src/mdlib/ns.c:394:12: warning: unused variable 'i' [-Wunused-variable]
     int    i,k,nri,nshift;
            ^
../../../src/mdlib/ns.c: In function 'put_in_list':
../../../src/mdlib/ns.c:546:25: warning: unused variable 'rlj' [-Wunused-variable]
     real      qi,qiB,qq,rlj;
                         ^~~
../../../src/mdlib/ns.c:546:22: warning: unused variable 'qq' [-Wunused-variable]
     real      qi,qiB,qq,rlj;
                      ^~
../../../src/mdlib/ns.c:541:23: warning: unused variable 'len' [-Wunused-variable]
     int       i0,nicg,len;
                       ^~~
../../../src/mdlib/ns.c:539:39: warning: unused variable 'ind_ij' [-Wunused-variable]
     int      i,j,jcg,igid,gid,nbl_ind,ind_ij;
                                       ^~~~~~
../../../src/mdlib/ns.c: In function 'ns_inner_tric':
../../../src/mdlib/ns.c:1283:15: warning: unused variable 'nsbuf' [-Wunused-variable]
     t_ns_buf *nsbuf;
               ^~~~~
../../../src/mdlib/ns.c: In function 'ns_inner_rect':
../../../src/mdlib/ns.c:1314:15: warning: unused variable 'nsbuf' [-Wunused-variable]
     t_ns_buf *nsbuf;
               ^~~~~
../../../src/mdlib/ns.c: In function 'ns_simple_core':
../../../src/mdlib/ns.c:1365:38: warning: unused variable 'nri' [-Wunused-variable]
     int      nsearch,icg,jcg,igid,i0,nri,nn;
                                      ^~~
../../../src/mdlib/ns.c:1365:35: warning: unused variable 'i0' [-Wunused-variable]
     int      nsearch,icg,jcg,igid,i0,nri,nn;
                                   ^~
../../../src/mdlib/ns.c:1365:26: warning: unused variable 'jcg' [-Wunused-variable]
     int      nsearch,icg,jcg,igid,i0,nri,nn;
                          ^~~
../../../src/mdlib/ns.c: In function 'nsgrid_core':
../../../src/mdlib/ns.c:1674:58: warning: unused variable 'dcz' [-Wunused-variable]
     real    r2,rs2,rvdw2,rcoul2,rm2,rl2,XI,YI,ZI,dcx,dcy,dcz,tmp1,tmp2;
                                                          ^~~
../../../src/mdlib/ns.c:1674:54: warning: unused variable 'dcy' [-Wunused-variable]
     real    r2,rs2,rvdw2,rcoul2,rm2,rl2,XI,YI,ZI,dcx,dcy,dcz,tmp1,tmp2;
                                                      ^~~
../../../src/mdlib/ns.c:1674:50: warning: unused variable 'dcx' [-Wunused-variable]
     real    r2,rs2,rvdw2,rcoul2,rm2,rl2,XI,YI,ZI,dcx,dcy,dcz,tmp1,tmp2;
                                                  ^~~
../../../src/mdlib/ns.c:1673:13: warning: unused variable 'xi' [-Wunused-variable]
     rvec    xi,*cgcm,grid_offset;
             ^~
../../../src/mdlib/ns.c:1669:42: warning: unused variable 'nri' [-Wunused-variable]
     int     cg0,cg1,icg=-1,cgsnr,i0,igid,nri,naaj,max_jcg;
                                          ^~~
../../../src/mdlib/ns.c:1666:45: warning: variable 'grid_z' set but not used [-Wunused-but-set-variable]
     real    gridx,gridy,gridz,grid_x,grid_y,grid_z;
                                             ^~~~~~
../../../src/mdlib/ns.c: In function 'init_ns':
../../../src/mdlib/ns.c:2177:11: warning: unused variable 'ptr' [-Wunused-variable]
     char *ptr;
           ^~~
../../../src/mdlib/ns.c: In function 'search_neighbours':
../../../src/mdlib/ns.c:2280:23: warning: unused variable 'cg_end' [-Wunused-variable]
     int      cg_start,cg_end,start,end;
                       ^~~~~~
../../../src/mdlib/ns.c:2280:14: warning: unused variable 'cg_start' [-Wunused-variable]
     int      cg_start,cg_end,start,end;
              ^~~~~~~~
../../../src/mdlib/ns.c:2279:15: warning: unused variable 'i_egp_flags' [-Wunused-variable]
     bool     *i_egp_flags;
               ^~~~~~~~~~~
../../../src/mdlib/ns.c:2278:15: warning: unused variable 'ptr' [-Wunused-variable]
     char     *ptr;
               ^~~
../../../src/mdlib/ns.c:2274:16: warning: unused variable 'j' [-Wunused-variable]
     int      i,j,m,ngid;
                ^
../../../src/mdlib/ns.c:2274:14: warning: unused variable 'i' [-Wunused-variable]
     int      i,j,m,ngid;
              ^
In file included from ../../../src/mdlib/ns.c:54:
At top level:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/ns.c:51:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/mdlib/ns.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o domdec.lo ../../../src/mdlib/domdec.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/domdec.c  -fPIC -DPIC -o .libs/domdec.o
../../../src/mdlib/domdec.c: In function 'dd_move_cellx':
../../../src/mdlib/domdec.c:785:41: warning: unused variable 'k' [-Wunused-variable]
     int  d,d1,dim,dim1,pos,buf_size,i,j,k,p,npulse;
                                         ^
../../../src/mdlib/domdec.c:785:19: warning: unused variable 'dim1' [-Wunused-variable]
     int  d,d1,dim,dim1,pos,buf_size,i,j,k,p,npulse;
                   ^~~~
../../../src/mdlib/domdec.c: In function 'dd_collect_vec':
../../../src/mdlib/domdec.c:1212:11: warning: unused variable 'buf' [-Wunused-variable]
     rvec *buf=NULL;
           ^~~
../../../src/mdlib/domdec.c:1211:18: warning: unused variable 'nalloc' [-Wunused-variable]
     int  n,i,c,a,nalloc=0;
                  ^~~~~~
../../../src/mdlib/domdec.c:1211:16: warning: unused variable 'a' [-Wunused-variable]
     int  n,i,c,a,nalloc=0;
                ^
../../../src/mdlib/domdec.c:1211:14: warning: unused variable 'c' [-Wunused-variable]
     int  n,i,c,a,nalloc=0;
              ^
../../../src/mdlib/domdec.c:1211:12: warning: unused variable 'i' [-Wunused-variable]
     int  n,i,c,a,nalloc=0;
            ^
../../../src/mdlib/domdec.c:1211:10: warning: unused variable 'n' [-Wunused-variable]
     int  n,i,c,a,nalloc=0;
          ^
../../../src/mdlib/domdec.c:1210:26: warning: unused variable 'ma' [-Wunused-variable]
     gmx_domdec_master_t *ma;
                          ^~
../../../src/mdlib/domdec.c: In function 'dd_distribute_vec_scatterv':
../../../src/mdlib/domdec.c:1427:18: warning: unused variable 'nalloc' [-Wunused-variable]
     int  n,i,c,a,nalloc=0;
                  ^~~~~~
../../../src/mdlib/domdec.c: In function 'gmx_ddcoord2pmeindex':
../../../src/mdlib/domdec.c:1805:28: warning: unused variable 'nc' [-Wunused-variable]
     ivec coords,coords_pme,nc;
                            ^~
../../../src/mdlib/domdec.c:1805:17: warning: unused variable 'coords_pme' [-Wunused-variable]
     ivec coords,coords_pme,nc;
                 ^~~~~~~~~~
../../../src/mdlib/domdec.c: In function 'dd_simnode2pmenode':
../../../src/mdlib/domdec.c:1874:16: warning: unused variable 'coord_pme' [-Wunused-variable]
     ivec coord,coord_pme;
                ^~~~~~~~~
../../../src/mdlib/domdec.c:1874:10: warning: unused variable 'coord' [-Wunused-variable]
     ivec coord,coord_pme;
          ^~~~~
../../../src/mdlib/domdec.c: In function 'receive_vir_ener':
../../../src/mdlib/domdec.c:2005:30: warning: unused variable 'rank' [-Wunused-variable]
     int  pmenode,coords[DIM],rank;
                              ^~~~
../../../src/mdlib/domdec.c:2005:18: warning: unused variable 'coords' [-Wunused-variable]
     int  pmenode,coords[DIM],rank;
                  ^~~~~~
../../../src/mdlib/domdec.c: In function 'make_dd_indices':
../../../src/mdlib/domdec.c:2107:11: warning: variable 'bLocalCG' set but not used [-Wunused-but-set-variable]
     char *bLocalCG;
           ^~~~~~~~
../../../src/mdlib/domdec.c: In function 'check_bLocalCG':
../../../src/mdlib/domdec.c:2162:9: warning: unused variable 'ncg' [-Wunused-variable]
     int ncg,i,ngl,nerr;
         ^~~
../../../src/mdlib/domdec.c: In function 'dd_redistribute_cg':
../../../src/mdlib/domdec.c:3706:49: warning: unused variable 'cell_d' [-Wunused-variable]
     int  c,i,cg,k,k0,k1,d,dim,dim2,dir,d2,d3,d4,cell_d;
                                                 ^~~~~~
../../../src/mdlib/domdec.c:3706:46: warning: unused variable 'd4' [-Wunused-variable]
     int  c,i,cg,k,k0,k1,d,dim,dim2,dir,d2,d3,d4,cell_d;
                                              ^~
../../../src/mdlib/domdec.c: In function 'get_load_distribution':
../../../src/mdlib/domdec.c:4326:16: warning: unused variable 'cid' [-Wunused-variable]
     int  d,dim,cid,i,pos;
                ^~~
../../../src/mdlib/domdec.c: In function 'setup_dd_grid':
../../../src/mdlib/domdec.c:4781:10: warning: unused variable 'bZYX' [-Wunused-variable]
     bool bZYX;
          ^~~~
../../../src/mdlib/domdec.c: In function 'make_pp_communicator':
../../../src/mdlib/domdec.c:4944:10: warning: unused variable 'periods' [-Wunused-variable]
     ivec periods;
          ^~~~~~~
../../../src/mdlib/domdec.c:4943:18: warning: unused variable 'buf' [-Wunused-variable]
     int  i,rank,*buf;
                  ^~~
../../../src/mdlib/domdec.c:4943:12: warning: unused variable 'rank' [-Wunused-variable]
     int  i,rank,*buf;
            ^~~~
../../../src/mdlib/domdec.c:4943:10: warning: unused variable 'i' [-Wunused-variable]
     int  i,rank,*buf;
          ^
../../../src/mdlib/domdec.c:4942:24: warning: variable 'comm' set but not used [-Wunused-but-set-variable]
     gmx_domdec_comm_t *comm;
                        ^~~~
../../../src/mdlib/domdec.c: In function 'receive_ddindex2simnodeid':
../../../src/mdlib/domdec.c:5069:11: warning: unused variable 'buf' [-Wunused-variable]
     int  *buf;
           ^~~
../../../src/mdlib/domdec.c:5068:24: warning: variable 'comm' set but not used [-Wunused-but-set-variable]
     gmx_domdec_comm_t *comm;
                        ^~~~
../../../src/mdlib/domdec.c: In function 'split_communicator':
../../../src/mdlib/domdec.c:5131:10: warning: unused variable 'periods' [-Wunused-variable]
     ivec periods;
          ^~~~~~~
../../../src/mdlib/domdec.c:5129:12: warning: unused variable 'rank' [-Wunused-variable]
     int  i,rank;
            ^~~~
../../../src/mdlib/domdec.c: In function 'check_dlb_support':
../../../src/mdlib/domdec.c:5598:9: warning: label 'edlbYES' defined but not used [-Wunused-label]
         edlbYES:
         ^~~~~~~
../../../src/mdlib/domdec.c:5594:9: warning: label 'edlbAUTO' defined but not used [-Wunused-label]
         edlbAUTO:
         ^~~~~~~~
../../../src/mdlib/domdec.c:5592:9: warning: label 'edlbNO' defined but not used [-Wunused-label]
         edlbNO:
         ^~~~~~
../../../src/mdlib/domdec.c:5553:19: warning: unused variable 'dd' [-Wunused-variable]
     gmx_domdec_t *dd;
                   ^~
../../../src/mdlib/domdec.c: In function 'init_domain_decomposition':
../../../src/mdlib/domdec.c:5652:14: warning: unused variable 'j' [-Wunused-variable]
     int  d,i,j;
              ^
../../../src/mdlib/domdec.c:5652:12: warning: unused variable 'i' [-Wunused-variable]
     int  d,i,j;
            ^
../../../src/mdlib/domdec.c:5652:10: warning: unused variable 'd' [-Wunused-variable]
     int  d,i,j;
          ^
../../../src/mdlib/domdec.c: In function 'turn_on_dlb':
../../../src/mdlib/domdec.c:6010:10: warning: unused variable 'buf' [-Wunused-variable]
     char buf[STRLEN];
          ^~~
../../../src/mdlib/domdec.c: In function 'dd_init_bondeds':
../../../src/mdlib/domdec.c:6086:10: warning: unused variable 'd' [-Wunused-variable]
     int  d;
          ^
../../../src/mdlib/domdec.c:6085:10: warning: unused variable 'bBondComm' [-Wunused-variable]
     bool bBondComm;
          ^~~~~~~~~
../../../src/mdlib/domdec.c: In function 'setup_dd_communication':
../../../src/mdlib/domdec.c:6486:64: warning: unused variable 'inv_ncg' [-Wunused-variable]
     real r_mb,r_comm2,r_scomm2,r_bcomm2,r,r_0,r_1,r2,rb2,r2inc,inv_ncg,tric_sh;
                                                                ^~~~~~~
../../../src/mdlib/domdec.c:6486:58: warning: unused variable 'r2inc' [-Wunused-variable]
     real r_mb,r_comm2,r_scomm2,r_bcomm2,r,r_0,r_1,r2,rb2,r2inc,inv_ncg,tric_sh;
                                                          ^~~~~
../../../src/mdlib/domdec.c:6486:47: warning: unused variable 'r_1' [-Wunused-variable]
     real r_mb,r_comm2,r_scomm2,r_bcomm2,r,r_0,r_1,r2,rb2,r2inc,inv_ncg,tric_sh;
                                               ^~~
../../../src/mdlib/domdec.c:6486:43: warning: unused variable 'r_0' [-Wunused-variable]
     real r_mb,r_comm2,r_scomm2,r_bcomm2,r,r_0,r_1,r2,rb2,r2inc,inv_ncg,tric_sh;
                                           ^~~
../../../src/mdlib/domdec.c:6486:23: warning: unused variable 'r_scomm2' [-Wunused-variable]
     real r_mb,r_comm2,r_scomm2,r_bcomm2,r,r_0,r_1,r2,rb2,r2inc,inv_ncg,tric_sh;
                       ^~~~~~~~
../../../src/mdlib/domdec.c:6486:10: warning: unused variable 'r_mb' [-Wunused-variable]
     real r_mb,r_comm2,r_scomm2,r_bcomm2,r,r_0,r_1,r2,rb2,r2inc,inv_ncg,tric_sh;
          ^~~~
../../../src/mdlib/domdec.c: In function 'dd_partition_system':
../../../src/mdlib/domdec.c:7481:12: warning: unused variable 'j' [-Wunused-variable]
     int  i,j,n,cg0=0,ncg_home_old=-1;
            ^
At top level:
../../../src/mdlib/domdec.c:1781:13: warning: 'dd_pmenodes' defined but not used [-Wunused-function]
 static int *dd_pmenodes(t_commrec *cr)
             ^~~~~~~~~~~
In file included from ../../../include/mdrun.h:50,
                 from ../../../src/mdlib/domdec.c:44:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../include/pme.h:46,
                 from ../../../src/mdlib/domdec.c:41:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/mdlib/domdec.c:31:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/domdec.c:31:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o tgroup.lo ../../../src/mdlib/tgroup.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/tgroup.c  -fPIC -DPIC -o .libs/tgroup.o
../../../src/mdlib/tgroup.c: In function 'init_grptcstat':
../../../src/mdlib/tgroup.c:57:9: warning: unused variable 'j' [-Wunused-variable]
   int i,j;
         ^
At top level:
../../../src/mdlib/tgroup.c:141:13: warning: 'accumulate_ekin' defined but not used [-Wunused-function]
 static void accumulate_ekin(t_commrec *cr,t_grpopts *opts,
             ^~~~~~~~~~~~~~~
In file included from ../../../include/update.h:48,
                 from ../../../src/mdlib/tgroup.c:51:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/tgroup.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/tgroup.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o stat.lo ../../../src/mdlib/stat.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/stat.c  -fPIC -DPIC -o .libs/stat.o
In file included from ../../../include/statutil.h:51,
                 from ../../../src/mdlib/stat.c:63:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/mdlib/stat.c:53:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/stat.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/stat.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o minimize.lo ../../../src/mdlib/minimize.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/minimize.c  -fPIC -DPIC -o .libs/minimize.o
../../../src/mdlib/minimize.c: In function 'get_f_norm_max':
../../../src/mdlib/minimize.c:153:14: warning: unused variable 'fmax2_0' [-Wunused-variable]
   real fmax2,fmax2_0,fam;
              ^~~~~~~
../../../src/mdlib/minimize.c: In function 'evaluate_energy':
../../../src/mdlib/minimize.c:573:12: warning: unused variable 'state' [-Wunused-variable]
   t_state *state;
            ^~~~~
../../../src/mdlib/minimize.c: In function 'do_cg':
../../../src/mdlib/minimize.c:813:10: warning: unused variable 'terminate' [-Wunused-variable]
   real   terminate=0;
          ^~~~~~~~~
../../../src/mdlib/minimize.c:798:26: warning: unused variable 'sum' [-Wunused-variable]
   double gpa,gpb,gpc,tmp,sum[2],minstep;
                          ^~~
../../../src/mdlib/minimize.c:797:28: warning: unused variable 'sfm' [-Wunused-variable]
   rvec   *f_global,*p,*sf,*sfm;
                            ^~~
../../../src/mdlib/minimize.c: In function 'do_lbfgs':
../../../src/mdlib/minimize.c:1329:10: warning: unused variable 'terminate' [-Wunused-variable]
   real   terminate;
          ^~~~~~~~~
../../../src/mdlib/minimize.c:1320:20: warning: variable 'first' set but not used [-Wunused-but-set-variable]
   bool   converged,first;
                    ^~~~~
../../../src/mdlib/minimize.c: In function 'do_steep':
../../../src/mdlib/minimize.c:1957:10: warning: unused variable 'terminate' [-Wunused-variable]
   real   terminate=0;
          ^~~~~~~~~
../../../src/mdlib/minimize.c:1946:16: warning: unused variable 'dvdlambda' [-Wunused-variable]
   real   ustep,dvdlambda,fnormn;
                ^~~~~~~~~
../../../src/mdlib/minimize.c:1945:19: warning: unused variable 'constepsize' [-Wunused-variable]
   real   stepsize,constepsize;
                   ^~~~~~~~~~~
../../../src/mdlib/minimize.c: In function 'do_nm':
../../../src/mdlib/minimize.c:2163:22: warning: unused variable 'fmax' [-Wunused-variable]
     real       fnorm,fmax;
                      ^~~~
../../../src/mdlib/minimize.c:2163:16: warning: unused variable 'fnorm' [-Wunused-variable]
     real       fnorm,fmax;
                ^~~~~
../../../src/mdlib/minimize.c:2151:16: warning: unused variable 'nfmax' [-Wunused-variable]
     int        nfmax,count;
                ^~~~~
../../../src/mdlib/minimize.c:2149:16: warning: unused variable 'bNS' [-Wunused-variable]
     bool       bNS;
                ^~~
../../../src/mdlib/minimize.c:2148:18: warning: variable 'lambda' set but not used [-Wunused-but-set-variable]
     real       t,lambda,t0,lam0;
                  ^~~~~~
../../../src/mdlib/minimize.c: In function 'do_tpi':
../../../src/mdlib/minimize.c:2419:18: warning: unused variable 'end' [-Wunused-variable]
   int    i,start,end;
                  ^~~
../../../src/mdlib/minimize.c:2419:12: warning: unused variable 'start' [-Wunused-variable]
   int    i,start,end;
            ^~~~~
../../../src/mdlib/minimize.c:2404:15: warning: unused variable 'TPI' [-Wunused-variable]
   const char *TPI="Test Particle Insertion";
               ^~~
At top level:
../../../src/mdlib/minimize.c:515:13: warning: 'do_x_sub' defined but not used [-Wunused-function]
 static void do_x_sub(t_commrec *cr,int n,rvec *x1,rvec *x2,real a,rvec *f)
             ^~~~~~~~
../../../src/mdlib/minimize.c:493:13: warning: 'do_x_step' defined but not used [-Wunused-function]
 static void do_x_step(t_commrec *cr,int n,rvec *x1,real a,rvec *f,rvec *x2)
             ^~~~~~~~~
In file included from ../../../include/pme.h:46,
                 from ../../../src/mdlib/minimize.c:83:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/mdlib/minimize.c:63:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../include/pull.h:44,
                 from ../../../include/update.h:49,
                 from ../../../src/mdlib/minimize.c:59:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../include/pull.h:44,
                 from ../../../include/update.h:49,
                 from ../../../src/mdlib/minimize.c:59:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/mdlib/minimize.c:47:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o vcm.lo ../../../src/mdlib/vcm.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/vcm.c  -fPIC -DPIC -o .libs/vcm.o
../../../src/mdlib/vcm.c: In function 'calc_vcm_grp':
../../../src/mdlib/vcm.c:122:28: warning: unused variable 'zz' [-Wunused-variable]
   real   m0,xx,xy,xz,yy,yz,zz;
                            ^~
../../../src/mdlib/vcm.c:122:25: warning: unused variable 'yz' [-Wunused-variable]
   real   m0,xx,xy,xz,yy,yz,zz;
                         ^~
../../../src/mdlib/vcm.c:122:22: warning: unused variable 'yy' [-Wunused-variable]
   real   m0,xx,xy,xz,yy,yz,zz;
                      ^~
../../../src/mdlib/vcm.c:122:19: warning: unused variable 'xz' [-Wunused-variable]
   real   m0,xx,xy,xz,yy,yz,zz;
                   ^~
../../../src/mdlib/vcm.c:122:16: warning: unused variable 'xy' [-Wunused-variable]
   real   m0,xx,xy,xz,yy,yz,zz;
                ^~
../../../src/mdlib/vcm.c:122:13: warning: unused variable 'xx' [-Wunused-variable]
   real   m0,xx,xy,xz,yy,yz,zz;
             ^~
../../../src/mdlib/vcm.c: In function 'do_stopcm_grp':
../../../src/mdlib/vcm.c:171:11: warning: unused variable 'tm_1' [-Wunused-variable]
   real tm,tm_1;
           ^~~~
../../../src/mdlib/vcm.c:171:8: warning: unused variable 'tm' [-Wunused-variable]
   real tm,tm_1;
        ^~
../../../src/mdlib/vcm.c:170:12: warning: unused variable 'm' [-Wunused-variable]
   int  i,g,m;
            ^
../../../src/mdlib/vcm.c: In function 'check_cm_grp':
../../../src/mdlib/vcm.c:250:14: warning: unused variable 'Tcm' [-Wunused-variable]
   tensor Icm,Tcm;
              ^~~
In file included from ../../../src/mdlib/vcm.c:43:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/vcm.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o update.lo ../../../src/mdlib/update.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/update.c  -fPIC -DPIC -o .libs/update.o
../../../src/mdlib/update.c: In function 'update':
../../../src/mdlib/update.c:771:39: warning: unused variable 'g' [-Wunused-variable]
   int              start,homenr,i,n,m,g;
                                       ^
../../../src/mdlib/update.c:770:20: warning: variable 'dt_1' set but not used [-Wunused-but-set-variable]
   real             dt_1;
                    ^~~~
In file included from ../../../src/mdlib/update.c:62:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/update.h:48,
                 from ../../../src/mdlib/update.c:53:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/update.c:50:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/update.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o wnblist.lo ../../../src/mdlib/wnblist.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/wnblist.c  -fPIC -DPIC -o .libs/wnblist.o
../../../src/mdlib/wnblist.c: In function 'read_nblist':
../../../src/mdlib/wnblist.c:135:27: warning: unused variable 'icmp' [-Wunused-variable]
     int  i,ii,j,nnbl,full,icmp,nri,isolv;
                           ^~~~
../../../src/mdlib/wnblist.c:135:22: warning: unused variable 'full' [-Wunused-variable]
     int  i,ii,j,nnbl,full,icmp,nri,isolv;
                      ^~~~
../../../src/mdlib/wnblist.c:135:17: warning: unused variable 'nnbl' [-Wunused-variable]
     int  i,ii,j,nnbl,full,icmp,nri,isolv;
                 ^~~~
../../../src/mdlib/wnblist.c:134:26: warning: unused variable 'b2' [-Wunused-variable]
     char buf[256],b1[32],b2[32],solv[256],il_code[256];
                          ^~
../../../src/mdlib/wnblist.c:134:19: warning: unused variable 'b1' [-Wunused-variable]
     char buf[256],b1[32],b2[32],solv[256],il_code[256];
                   ^~
../../../src/mdlib/wnblist.c:133:10: warning: unused variable 'bNL' [-Wunused-variable]
     bool bNL;
          ^~~
In file included from ../../../src/mdlib/wnblist.c:44:
At top level:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o pull.lo ../../../src/mdlib/pull.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/pull.c  -fPIC -DPIC -o .libs/pull.o
../../../src/mdlib/pull.c: In function 'apply_forces_grp':
../../../src/mdlib/pull.c:155:20: warning: variable 'end' set but not used [-Wunused-but-set-variable]
   int i,ii,m,start,end;
                    ^~~
../../../src/mdlib/pull.c: In function 'do_constraint':
../../../src/mdlib/pull.c:283:22: warning: unused variable 'mass' [-Wunused-variable]
   double lambda, rm, mass, invdt=0;
                      ^~~~
../../../src/mdlib/pull.c:282:10: warning: unused variable 'd0' [-Wunused-variable]
   double d0,inpr;
          ^~
../../../src/mdlib/pull.c: In function 'init_pull_group_index':
../../../src/mdlib/pull.c:779:16: warning: variable 'ga2la' set but not used [-Wunused-but-set-variable]
   gmx_ga2la_t *ga2la=NULL;
                ^~~~~
In file included from ../../../include/mdrun.h:50,
                 from ../../../src/mdlib/pull.c:60:
At top level:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/pull.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/pull.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/mdlib/pull.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
../../../src/mdlib/pull.c: In function 'open_pull_out.part.3':
../../../src/mdlib/pull.c:134:19: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=]
    sprintf(buf,"%d",g);
                   ^
In file included from /usr/include/stdio.h:862,
                 from ../../../src/mdlib/pull.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 2 and 11 bytes into a destination of size 10
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/mdlib/pull.c:128:23: warning: ' ' directive writing 1 byte into a region of size between 0 and 9 [-Wformat-overflow=]
        sprintf(buf,"%d %s%c",g,(bCoord && g > 0)?"d":"",'X'+m);
                       ^
In file included from /usr/include/stdio.h:862,
                 from ../../../src/mdlib/pull.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 4 and 14 bytes into a destination of size 10
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o csettle.lo ../../../src/mdlib/csettle.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/csettle.c  -fPIC -DPIC -o .libs/csettle.o
../../../src/mdlib/csettle.c: In function 'xshake':
../../../src/mdlib/csettle.c:183:39: warning: unused variable 'conv' [-Wunused-variable]
   int i,ll,ii,jj,l3,ix,iy,iz,jx,jy,jz,conv;
                                       ^~~~
../../../src/mdlib/csettle.c: In function 'csettle':
../../../src/mdlib/csettle.c:298:10: warning: unused variable 'shakeret' [-Wunused-variable]
   int i, shakeret, ow1, hw2, hw3;
          ^~~~~~~~
In file included from ../../../src/mdlib/csettle.c:42:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/csettle.c:42:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o tables.lo ../../../src/mdlib/tables.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/tables.c  -fPIC -DPIC -o .libs/tables.o
../../../src/mdlib/tables.c: In function 'done_tabledata':
../../../src/mdlib/tables.c:470:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/mdlib/tables.c: In function 'make_tables':
../../../src/mdlib/tables.c:835:17: warning: unused variable 'j' [-Wunused-variable]
   int         i,j,k,nx,nx0,tabsel[etiNR];
                 ^
../../../src/mdlib/tables.c: In function 'make_bonded_table':
../../../src/mdlib/tables.c:950:10: warning: variable 'start' set but not used [-Wunused-but-set-variable]
   double start;
          ^~~~~
At top level:
../../../src/mdlib/tables.c:155:13: warning: 'splint' defined but not used [-Wunused-function]
 static void splint(real xa[],real ya[],real y2a[],
             ^~~~~~
In file included from ../../../src/mdlib/tables.c:51:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/tables.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/tables.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o wall.lo ../../../src/mdlib/wall.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/wall.c  -fPIC -DPIC -o .libs/wall.o
../../../src/mdlib/wall.c: In function 'do_walls':
../../../src/mdlib/wall.c:107:47: warning: unused variable 'Heps' [-Wunused-variable]
   real tabscale,*VFtab,rt,eps,eps2,Yt,Ft,Geps,Heps,Heps2,Fp,VV,FF;
                                               ^~~~
../../../src/mdlib/wall.c:103:50: warning: variable 'Fwall' set but not used [-Wunused-but-set-variable]
   real *nbfp,lamfac,fac_d[2],fac_r[2],Cd,Cr,Vtot,Fwall[2];
                                                  ^~~~~
In file included from ../../../src/mdlib/wall.c:48:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/wall.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/mdlib/wall.c:45:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o qmmm.lo ../../../src/mdlib/qmmm.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/qmmm.c  -fPIC -DPIC -o .libs/qmmm.o
../../../src/mdlib/qmmm.c: In function 'update_QMMMrec':
../../../src/mdlib/qmmm.c:725:6: warning: unused variable 'MMatoms' [-Wunused-variable]
     *MMatoms;
      ^~~~~~~
../../../src/mdlib/qmmm.c:721:17: warning: variable 'QMMMlist_lr' set but not used [-Wunused-but-set-variable]
     QMMMlist_sr,QMMMlist_lr;
                 ^~~~~~~~~~~
At top level:
../../../src/mdlib/qmmm.c:131:12: warning: 'int_comp' defined but not used [-Wunused-function]
 static int int_comp(const void *a,const void *b){
            ^~~~~~~~
In file included from ../../../src/mdlib/qmmm.c:60:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/qmmm.c:49:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/qmmm.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/qmmm.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_parallel_3dfft.lo ../../../src/mdlib/gmx_parallel_3dfft.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/gmx_parallel_3dfft.c  -fPIC -DPIC -o .libs/gmx_parallel_3dfft.o
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_fft.lo ../../../src/mdlib/gmx_fft.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/gmx_fft.c  -fPIC -DPIC -o .libs/gmx_fft.o
In file included from ../../../src/mdlib/gmx_fft.c:30:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o clincs.lo ../../../src/mdlib/clincs.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/clincs.c  -fPIC -DPIC -o .libs/clincs.o
../../../src/mdlib/clincs.c: In function 'do_lincsp':
../../../src/mdlib/clincs.c:189:54: warning: unused variable 'lam' [-Wunused-variable]
     real    tmp0,tmp1,tmp2,im1,im2,mvb,rlen,len,wfac,lam;
                                                      ^~~
../../../src/mdlib/clincs.c:189:49: warning: unused variable 'wfac' [-Wunused-variable]
     real    tmp0,tmp1,tmp2,im1,im2,mvb,rlen,len,wfac,lam;
                                                 ^~~~
../../../src/mdlib/clincs.c:189:45: warning: unused variable 'len' [-Wunused-variable]
     real    tmp0,tmp1,tmp2,im1,im2,mvb,rlen,len,wfac,lam;
                                             ^~~
../../../src/mdlib/clincs.c:189:40: warning: unused variable 'rlen' [-Wunused-variable]
     real    tmp0,tmp1,tmp2,im1,im2,mvb,rlen,len,wfac,lam;
                                        ^~~~
../../../src/mdlib/clincs.c: In function 'set_lincs':
../../../src/mdlib/clincs.c:764:14: warning: variable 'bLocal' set but not used [-Wunused-but-set-variable]
     bool     bLocal;
              ^~~~~~
../../../src/mdlib/clincs.c: In function 'constrain_lincs':
../../../src/mdlib/clincs.c:1084:25: warning: unused variable 'error' [-Wunused-variable]
     int   i,warn,p_imax,error;
                         ^~~~~
At top level:
../../../src/mdlib/clincs.c:1034:13: warning: 'dump_conf' defined but not used [-Wunused-function]
 static void dump_conf(gmx_domdec_t *dd,struct gmx_lincsdata *li,
             ^~~~~~~~~
In file included from ../../../include/mdrun.h:50,
                 from ../../../src/mdlib/clincs.c:50:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/clincs.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/clincs.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/mdlib/clincs.c:45:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_fft_fftw3.lo ../../../src/mdlib/gmx_fft_fftw3.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/gmx_fft_fftw3.c  -fPIC -DPIC -o .libs/gmx_fft_fftw3.o
In file included from ../../../include/gmx_fft.h:41,
                 from ../../../src/mdlib/gmx_fft_fftw3.c:27:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o qm_gaussian.lo ../../../src/mdlib/qm_gaussian.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/qm_gaussian.c  -fPIC -DPIC -o .libs/qm_gaussian.o
../../../src/mdlib/qm_gaussian.c: In function 'init_gaussian':
../../../src/mdlib/qm_gaussian.c:73:6: warning: unused variable 'rffile' [-Wunused-variable]
     *rffile=NULL,*out=NULL;
      ^~~~~~
In file included from ../../../src/mdlib/qm_gaussian.c:60:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/qm_gaussian.c:49:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/qm_gaussian.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/qm_gaussian.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_wallcycle.lo ../../../src/mdlib/gmx_wallcycle.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/gmx_wallcycle.c  -fPIC -DPIC -o .libs/gmx_wallcycle.o
../../../src/mdlib/gmx_wallcycle.c: In function 'wallcycle_sum':
../../../src/mdlib/gmx_wallcycle.c:163:31: warning: unused variable 'buf_all' [-Wunused-variable]
   double buf[ewcNR],*cyc_all,*buf_all;
                               ^~~~~~~
../../../src/mdlib/gmx_wallcycle.c:163:22: warning: unused variable 'cyc_all' [-Wunused-variable]
   double buf[ewcNR],*cyc_all,*buf_all;
                      ^~~~~~~
../../../src/mdlib/gmx_wallcycle.c:163:10: warning: unused variable 'buf' [-Wunused-variable]
   double buf[ewcNR],*cyc_all,*buf_all;
          ^~~
At top level:
../../../src/mdlib/gmx_wallcycle.c:59:26: warning: 'wc_barrier' defined but not used [-Wunused-variable]
 static bool              wc_barrier=FALSE;
                          ^~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o shellfc.lo ../../../src/mdlib/shellfc.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/shellfc.c  -fPIC -DPIC -o .libs/shellfc.o
../../../src/mdlib/shellfc.c: In function 'predict_shells':
../../../src/mdlib/shellfc.c:115:18: warning: unused variable 'dt_3' [-Wunused-variable]
   real dt_1,dt_2,dt_3,fudge,tm,m1,m2,m3;
                  ^~~~
../../../src/mdlib/shellfc.c:115:13: warning: unused variable 'dt_2' [-Wunused-variable]
   real dt_1,dt_2,dt_3,fudge,tm,m1,m2,m3;
             ^~~~
../../../src/mdlib/shellfc.c: In function 'init_shell_flexcon':
../../../src/mdlib/shellfc.c:197:32: warning: unused variable 'mt' [-Wunused-variable]
   int         i,j,nmol,type,mb,mt,a_offset,cg,mol,ftype,nra;
                                ^~
../../../src/mdlib/shellfc.c:197:19: warning: unused variable 'nmol' [-Wunused-variable]
   int         i,j,nmol,type,mb,mt,a_offset,cg,mol,ftype,nra;
                   ^~~~
../../../src/mdlib/shellfc.c: In function 'init_adir':
../../../src/mdlib/shellfc.c:694:12: warning: unused variable 'dx' [-Wunused-variable]
   rvec   p,dx;
            ^~
../../../src/mdlib/shellfc.c:694:10: warning: unused variable 'p' [-Wunused-variable]
   rvec   p,dx;
          ^
../../../src/mdlib/shellfc.c:691:13: warning: unused variable 'scale' [-Wunused-variable]
   real   dt,scale;
             ^~~~~
../../../src/mdlib/shellfc.c:690:16: warning: unused variable 'gt' [-Wunused-variable]
   int    gf,ga,gt;
                ^~
../../../src/mdlib/shellfc.c:690:13: warning: unused variable 'ga' [-Wunused-variable]
   int    gf,ga,gt;
             ^~
../../../src/mdlib/shellfc.c:690:10: warning: unused variable 'gf' [-Wunused-variable]
   int    gf,ga,gt;
          ^~
../../../src/mdlib/shellfc.c: In function 'relax_shell_flexcon':
../../../src/mdlib/shellfc.c:776:19: warning: unused variable 'g' [-Wunused-variable]
   int    nflexcon,g,number_steps,d,Min=0,count=0;
                   ^
../../../src/mdlib/shellfc.c:772:10: warning: unused variable 'cbuf' [-Wunused-variable]
   char   cbuf[56];
          ^~~~
../../../src/mdlib/shellfc.c:771:19: warning: unused variable 'xiS' [-Wunused-variable]
   real   ftol,xiH,xiS,dum=0;
                   ^~~
../../../src/mdlib/shellfc.c:771:15: warning: unused variable 'xiH' [-Wunused-variable]
   real   ftol,xiH,xiS,dum=0;
               ^~~
../../../src/mdlib/shellfc.c:769:10: warning: unused variable 'dx' [-Wunused-variable]
   rvec   dx;
          ^~
In file included from ../../../src/mdlib/shellfc.c:55:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/mdrun.h:50,
                 from ../../../src/mdlib/shellfc.c:45:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/shellfc.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/shellfc.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o sim_util.lo ../../../src/mdlib/sim_util.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/sim_util.c  -fPIC -DPIC -o .libs/sim_util.o
../../../src/mdlib/sim_util.c: In function 'calc_virial':
../../../src/mdlib/sim_util.c:250:10: warning: unused variable 'virtest' [-Wunused-variable]
   tensor virtest;
          ^~~~~~~
../../../src/mdlib/sim_util.c:249:9: warning: unused variable 'j' [-Wunused-variable]
   int i,j;
         ^
../../../src/mdlib/sim_util.c: In function 'do_force':
../../../src/mdlib/sim_util.c:357:24: warning: unused variable 'cycles_pme' [-Wunused-variable]
   float  cycles_ppdpme,cycles_pme,cycles_force;
                        ^~~~~~~~~~
../../../src/mdlib/sim_util.c:355:10: warning: unused variable 'e' [-Wunused-variable]
   real   e,v,dvdl;
          ^
../../../src/mdlib/sim_util.c:354:10: warning: unused variable 'boxs' [-Wunused-variable]
   matrix boxs;
          ^~~~
../../../src/mdlib/sim_util.c:353:57: warning: unused variable 'bBS' [-Wunused-variable]
   bool   bSepDVDL,bStateChanged,bNS,bFillGrid,bCalcCGCM,bBS,bDoForces;
                                                         ^~~
../../../src/mdlib/sim_util.c:348:15: warning: unused variable 'box_size' [-Wunused-variable]
   static rvec box_size;
               ^~~~~~~~
../../../src/mdlib/sim_util.c: In function 'calc_enervirdiff':
../../../src/mdlib/sim_util.c:823:13: warning: variable 'r1' set but not used [-Wunused-but-set-variable]
   double r0,r1,r,rc3,rc9,ea,eb,ec,pa,pb,pc,pd;
             ^~
../../../src/mdlib/sim_util.c: In function 'init_md':
../../../src/mdlib/sim_util.c:1222:13: warning: unused variable 'mod' [-Wunused-variable]
   real tmpt,mod;
             ^~~
../../../src/mdlib/sim_util.c:1222:8: warning: unused variable 'tmpt' [-Wunused-variable]
   real tmpt,mod;
        ^~~~
../../../src/mdlib/sim_util.c:1221:12: warning: unused variable 'n' [-Wunused-variable]
   int  i,j,n;
            ^
../../../src/mdlib/sim_util.c:1221:10: warning: unused variable 'j' [-Wunused-variable]
   int  i,j,n;
          ^
At top level:
../../../src/mdlib/sim_util.c:348:15: warning: 'box_size' defined but not used [-Wunused-variable]
   static rvec box_size;
               ^~~~~~~~
In file included from ../../../src/mdlib/sim_util.c:78:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/pme.h:46,
                 from ../../../src/mdlib/sim_util.c:68:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/mdlib/sim_util.c:57:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/sim_util.c:57:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o vsite.lo ../../../src/mdlib/vsite.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/vsite.c  -fPIC -DPIC -o .libs/vsite.o
../../../src/mdlib/vsite.c: In function 'constr_vsiten':
../../../src/mdlib/vsite.c:437:8: warning: unused variable 'xs' [-Wunused-variable]
   rvec xs,x1,dx;
        ^~
../../../src/mdlib/vsite.c: In function 'construct_vsites':
../../../src/mdlib/vsite.c:484:25: warning: unused variable 'rtmp' [-Wunused-variable]
   rvec      reftmp,vtmp,rtmp;
                         ^~~~
../../../src/mdlib/vsite.c:484:20: warning: unused variable 'vtmp' [-Wunused-variable]
   rvec      reftmp,vtmp,rtmp;
                    ^~~~
../../../src/mdlib/vsite.c:484:13: warning: unused variable 'reftmp' [-Wunused-variable]
   rvec      reftmp,vtmp,rtmp;
             ^~~~~~
../../../src/mdlib/vsite.c:478:19: warning: unused variable 'ii' [-Wunused-variable]
   int       i,inc,ii,nra,nr,tp,ftype;
                   ^~
../../../src/mdlib/vsite.c: In function 'spread_vsite2':
../../../src/mdlib/vsite.c:655:11: warning: unused variable 'b' [-Wunused-variable]
   real    b;
           ^
../../../src/mdlib/vsite.c: In function 'spread_vsite3FD':
../../../src/mdlib/vsite.c:770:23: warning: unused variable 'd' [-Wunused-variable]
   int     svi,sji,skj,d;
                       ^
../../../src/mdlib/vsite.c:767:14: warning: unused variable 'fz' [-Wunused-variable]
   real fx,fy,fz,c,invl,fproj,a1;
              ^~
../../../src/mdlib/vsite.c:767:11: warning: unused variable 'fy' [-Wunused-variable]
   real fx,fy,fz,c,invl,fproj,a1;
           ^~
../../../src/mdlib/vsite.c:767:8: warning: unused variable 'fx' [-Wunused-variable]
   real fx,fy,fz,c,invl,fproj,a1;
        ^~
../../../src/mdlib/vsite.c: In function 'spread_vsite_f':
../../../src/mdlib/vsite.c:1255:19: warning: unused variable 'm' [-Wunused-variable]
   int       i,inc,m,nra,nr,tp,ftype;
                   ^
../../../src/mdlib/vsite.c: In function 'count_intercg_vsite':
../../../src/mdlib/vsite.c:1409:11: warning: unused variable 'mt' [-Wunused-variable]
   int  mb,mt,ftype,nral,i,cg,a;
           ^~
../../../src/mdlib/vsite.c: In function 'get_vsite_pbc':
../../../src/mdlib/vsite.c:1448:38: warning: unused variable 'cg_c' [-Wunused-variable]
   int  ftype,nral,i,j,vsi,vsite,cg_v,cg_c,a,nc3=0;
                                      ^~~~
../../../src/mdlib/vsite.c: In function 'init_vsite':
../../../src/mdlib/vsite.c:1559:13: warning: unused variable 'cg' [-Wunused-variable]
   int *a2cg,cg;
             ^~
In file included from ../../../src/mdlib/vsite.c:46:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/vsite.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -version-info 5:0:0 -lgslcblas  -o libmd.la -rpath /usr/lib calcmu.lo calcvir.lo constr.lo coupling.lo domdec.lo domdec_con.lo domdec_network.lo domdec_setup.lo domdec_top.lo ebin.lo edsam.lo ewald.lo fftgrid.lo force.lo ghat.lo init.lo mdatom.lo mdebin.lo minimize.lo mvxvf.lo ns.lo nsgrid.lo perf_est.lo pme.lo pme_pp.lo pppm.lo partdec.lo pull.lo pullutil.lo rf_util.lo shakef.lo sim_util.lo shellfc.lo stat.lo tables.lo tgroup.lo update.lo vcm.lo vsite.lo wall.lo wnblist.lo csettle.lo clincs.lo qmmm.lo gmx_fft.lo gmx_parallel_3dfft.lo gmx_wallcycle.lo qm_gaussian.lo gmx_fft_fftw3.lo ../gmxlib/libgmx.la	 -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
i586-alt-linux-gcc -shared  .libs/calcmu.o .libs/calcvir.o .libs/constr.o .libs/coupling.o .libs/domdec.o .libs/domdec_con.o .libs/domdec_network.o .libs/domdec_setup.o .libs/domdec_top.o .libs/ebin.o .libs/edsam.o .libs/ewald.o .libs/fftgrid.o .libs/force.o .libs/ghat.o .libs/init.o .libs/mdatom.o .libs/mdebin.o .libs/minimize.o .libs/mvxvf.o .libs/ns.o .libs/nsgrid.o .libs/perf_est.o .libs/pme.o .libs/pme_pp.o .libs/pppm.o .libs/partdec.o .libs/pull.o .libs/pullutil.o .libs/rf_util.o .libs/shakef.o .libs/sim_util.o .libs/shellfc.o .libs/stat.o .libs/tables.o .libs/tgroup.o .libs/update.o .libs/vcm.o .libs/vsite.o .libs/wall.o .libs/wnblist.o .libs/csettle.o .libs/clincs.o .libs/qmmm.o .libs/gmx_fft.o .libs/gmx_parallel_3dfft.o .libs/gmx_wallcycle.o .libs/qm_gaussian.o .libs/gmx_fft_fftw3.o  -lgslcblas ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath  -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wl,-soname -Wl,libmd.so.5 -o .libs/libmd.so.5.0.0
(cd .libs && rm -f libmd.so.5 && ln -s libmd.so.5.0.0 libmd.so.5)
(cd .libs && rm -f libmd.so && ln -s libmd.so.5.0.0 libmd.so)
creating libmd.la
(cd .libs && rm -f libmd.la && ln -s ../libmd.la libmd.la)
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
Making all in kernel
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o add_par.lo ../../../src/kernel/add_par.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/add_par.c  -fPIC -DPIC -o .libs/add_par.o
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/add_par.c:46:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/kernel/add_par.c:44:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o compute_io.lo ../../../src/kernel/compute_io.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/compute_io.c  -fPIC -DPIC -o .libs/compute_io.o
../../../src/kernel/compute_io.c: In function 'compute_io':
../../../src/kernel/compute_io.c:49:53: warning: unused variable 'nfep' [-Wunused-variable]
   int nstx=0,nstv=0,nstf=0,nste=0,nstlog=0,nstxtc=0,nfep=0;
                                                     ^~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmxcpp.lo ../../../src/kernel/gmxcpp.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/gmxcpp.c  -fPIC -DPIC -o .libs/gmxcpp.o
../../../src/kernel/gmxcpp.c: In function 'cpp_close_file':
../../../src/kernel/gmxcpp.c:453:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gpp_bond_atomtype.lo ../../../src/kernel/gpp_bond_atomtype.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/gpp_bond_atomtype.c  -fPIC -DPIC -o .libs/gpp_bond_atomtype.o
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gpp_atomtype.lo ../../../src/kernel/gpp_atomtype.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/gpp_atomtype.c  -fPIC -DPIC -o .libs/gpp_atomtype.o
In file included from ../../../src/kernel/topdirs.h:40,
                 from ../../../src/kernel/gpp_atomtype.c:45:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o convparm.lo ../../../src/kernel/convparm.c
mkdir .libs
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/convparm.c  -fPIC -DPIC -o .libs/convparm.o
../../../src/kernel/convparm.c: In function 'new_interaction_list':
../../../src/kernel/convparm.c:404:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/kernel/convparm.c: In function 'convert_params':
../../../src/kernel/convparm.c:414:12: warning: unused variable 'j' [-Wunused-variable]
   int    i,j,maxtypes,mt;
            ^
At top level:
../../../src/kernel/convparm.c:402:13: warning: 'new_interaction_list' defined but not used [-Wunused-function]
 static void new_interaction_list(t_ilist *ilist)
             ^~~~~~~~~~~~~~~~~~~~
In file included from ../../../src/kernel/topio.h:41,
                 from ../../../src/kernel/convparm.c:48:
../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable]
 static const char *couple_lam[ecouplamNR+1]    = {
                    ^~~~~~~~~~
../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable]
 static const char *constraints[eshNR+1]    = {
                    ^~~~~~~~~~~
In file included from ../../../src/kernel/readir.h:43,
                 from ../../../src/kernel/topio.h:41,
                 from ../../../src/kernel/convparm.c:48:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/readir.h:42,
                 from ../../../src/kernel/topio.h:41,
                 from ../../../src/kernel/convparm.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/convparm.c:44:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/convparm.c:44:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gen_ad.lo ../../../src/kernel/gen_ad.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/gen_ad.c  -fPIC -DPIC -o .libs/gen_ad.o
../../../src/kernel/gen_ad.c: In function 'get_impropers':
../../../src/kernel/gen_ad.c:437:25: warning: unused variable 'r' [-Wunused-variable]
   int       nidih,i,j,k,r,start,ninc,nalloc;
                         ^
../../../src/kernel/gen_ad.c:436:15: warning: unused variable 'hbidih' [-Wunused-variable]
   t_rbonded  *hbidih;
               ^~~~~~
../../../src/kernel/gen_ad.c:434:14: warning: unused variable 'a0' [-Wunused-variable]
   char      *a0;
              ^~
../../../src/kernel/gen_ad.c: In function 'clean_excls':
../../../src/kernel/gen_ad.c:576:26: warning: unused variable 'n' [-Wunused-variable]
   int i,j,j1,k,k1,l,l1,m,n,e;
                          ^
../../../src/kernel/gen_ad.c:576:24: warning: unused variable 'm' [-Wunused-variable]
   int i,j,j1,k,k1,l,l1,m,n,e;
                        ^
../../../src/kernel/gen_ad.c: In function 'generate_excls':
../../../src/kernel/gen_ad.c:618:28: warning: unused variable 'e' [-Wunused-variable]
   int i,j,j1,k,k1,l,l1,m,n,e,N;
                            ^
../../../src/kernel/gen_ad.c:618:24: warning: unused variable 'm' [-Wunused-variable]
   int i,j,j1,k,k1,l,l1,m,n,e,N;
                        ^
../../../src/kernel/gen_ad.c:618:21: warning: unused variable 'l1' [-Wunused-variable]
   int i,j,j1,k,k1,l,l1,m,n,e,N;
                     ^~
../../../src/kernel/gen_ad.c:618:19: warning: unused variable 'l' [-Wunused-variable]
   int i,j,j1,k,k1,l,l1,m,n,e,N;
                   ^
../../../src/kernel/gen_ad.c:618:16: warning: unused variable 'k1' [-Wunused-variable]
   int i,j,j1,k,k1,l,l1,m,n,e,N;
                ^~
../../../src/kernel/gen_ad.c:618:14: warning: unused variable 'k' [-Wunused-variable]
   int i,j,j1,k,k1,l,l1,m,n,e,N;
              ^
../../../src/kernel/gen_ad.c:618:11: warning: unused variable 'j1' [-Wunused-variable]
   int i,j,j1,k,k1,l,l1,m,n,e,N;
           ^~
At top level:
../../../src/kernel/gen_ad.c:327:13: warning: 'dump_param' defined but not used [-Wunused-function]
 static void dump_param(FILE *fp,char *title,int n,t_param ps[])
             ^~~~~~~~~~
../../../src/kernel/gen_ad.c:289:13: warning: 'ideq' defined but not used [-Wunused-function]
 static bool ideq(t_param *p1, t_param *p2)
             ^~~~
../../../src/kernel/gen_ad.c:114:13: warning: 'aeq' defined but not used [-Wunused-function]
 static bool aeq(t_param *p1, t_param *p2)
             ^~~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/resall.h:41,
                 from ../../../src/kernel/gen_ad.c:57:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/kernel/topio.h:41,
                 from ../../../src/kernel/gen_ad.c:51:
../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable]
 static const char *couple_lam[ecouplamNR+1]    = {
                    ^~~~~~~~~~
../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable]
 static const char *constraints[eshNR+1]    = {
                    ^~~~~~~~~~~
In file included from ../../../src/kernel/readir.h:42,
                 from ../../../src/kernel/topio.h:41,
                 from ../../../src/kernel/gen_ad.c:51:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/toputil.h:40,
                 from ../../../src/kernel/gen_ad.c:50:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/gen_ad.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/gen_ad.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o h_db.lo ../../../src/kernel/h_db.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/h_db.c  -fPIC -DPIC -o .libs/h_db.o
../../../src/kernel/h_db.c: In function 'dump_h_db':
../../../src/kernel/h_db.c:113:10: warning: unused variable 'j' [-Wunused-variable]
   int  i,j,k;
          ^
In file included from ../../../src/kernel/hackblock.h:42,
                 from ../../../src/kernel/h_db.h:41,
                 from ../../../src/kernel/h_db.c:47:
At top level:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/h_db.h:41,
                 from ../../../src/kernel/h_db.c:47:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o grompp.o ../../../src/kernel/grompp.c
../../../src/kernel/grompp.c: In function 'new_status':
../../../src/kernel/grompp.c:300:3: warning: statement with no effect [-Wunused-value]
   mbs;
   ^~~
../../../src/kernel/grompp.c: In function 'read_posres':
../../../src/kernel/grompp.c:478:10: warning: unused variable 'bFirst' [-Wunused-variable]
   bool   bFirst = TRUE;
          ^~~~~~
../../../src/kernel/grompp.c: In function 'gen_posres':
../../../src/kernel/grompp.c:604:9: warning: unused variable 'j' [-Wunused-variable]
   int i,j;
         ^
../../../src/kernel/grompp.c:604:7: warning: unused variable 'i' [-Wunused-variable]
   int i,j;
       ^
../../../src/kernel/grompp.c: In function 'main':
../../../src/kernel/grompp.c:769:16: warning: unused variable 'natoms' [-Wunused-variable]
   int          natoms,nvsite,comb,mt;
                ^~~~~~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/pdb2top.h:43,
                 from ../../../src/kernel/add_par.h:41,
                 from ../../../src/kernel/grompp.c:74:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/kernel/grompp.c:60:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/grompp.c:60:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/grompp.c:54:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/kernel/grompp.c:50:
../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable]
 static const char *couple_lam[ecouplamNR+1]    = {
                    ^~~~~~~~~~
../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable]
 static const char *constraints[eshNR+1]    = {
                    ^~~~~~~~~~~
In file included from ../../../src/kernel/readir.h:43,
                 from ../../../src/kernel/grompp.c:50:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/readir.h:42,
                 from ../../../src/kernel/grompp.c:50:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
../../../src/kernel/grompp.c: In function 'main':
../../../src/kernel/grompp.c:380:19: warning: '%s' directive writing up to 4095 bytes into a region of size between 4045 and 4055 [-Wformat-overflow=]
       sprintf(buf,"%d non-matching atom name%s\n"
                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/kernel/grompp.c:856:14:
   new_status(fn,opt2fn_null("-pp",NFILE,fnm),opt2fn("-c",NFILE,fnm),
              ~~    
../../../src/kernel/grompp.c:381:25: note: format string is defined here
        "atom names from %s will be used\n"
                         ^~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/kernel/grompp.c:46:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 89 or more bytes (assuming 4194) into a destination of size 4096
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o hackblock.lo ../../../src/kernel/hackblock.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/hackblock.c  -fPIC -DPIC -o .libs/hackblock.o
In file included from ../../../src/kernel/hackblock.c:44:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/hackblock.c:44:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/hackblock.h:42,
                 from ../../../src/kernel/hackblock.c:42:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/hackblock.c:42:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o pgutil.lo ../../../src/kernel/pgutil.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/pgutil.c  -fPIC -DPIC -o .libs/pgutil.o
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o genhydro.lo ../../../src/kernel/genhydro.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/genhydro.c  -fPIC -DPIC -o .libs/genhydro.o
In file included from ../../../src/kernel/hackblock.h:42,
                 from ../../../src/kernel/genhydro.h:41,
                 from ../../../src/kernel/genhydro.c:56:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/genhydro.h:40,
                 from ../../../src/kernel/genhydro.c:56:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/genhydro.c:51:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/genhydro.c:50:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/genhydro.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/genhydro.c:46:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o sorting.lo ../../../src/kernel/sorting.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/sorting.c  -fPIC -DPIC -o .libs/sorting.o
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gen_vsite.lo ../../../src/kernel/gen_vsite.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/gen_vsite.c  -fPIC -DPIC -o .libs/gen_vsite.o
../../../src/kernel/gen_vsite.c: In function 'read_vsite_database':
../../../src/kernel/gen_vsite.c:150:34: warning: unused variable 'prevdir' [-Wunused-variable]
   int i,j,n,k,nvsite,ntop,curdir,prevdir;
                                  ^~~~~~~
../../../src/kernel/gen_vsite.c:150:9: warning: unused variable 'j' [-Wunused-variable]
   int i,j,n,k,nvsite,ntop,curdir,prevdir;
         ^
../../../src/kernel/gen_vsite.c: In function 'add_vsites':
../../../src/kernel/gen_vsite.c:477:33: warning: unused variable 'bb' [-Wunused-variable]
   int i,j,ftype,other,moreheavy,bb;
                                 ^~
../../../src/kernel/gen_vsite.c: In function 'gen_vsites_6ring':
../../../src/kernel/gen_vsite.c:560:32: warning: variable 'yCE2' set but not used [-Wunused-but-set-variable]
    real xCG,yCG,xCE1,yCE1,xCE2,yCE2;
                                ^~~~
../../../src/kernel/gen_vsite.c:560:27: warning: variable 'xCE2' set but not used [-Wunused-but-set-variable]
    real xCG,yCG,xCE1,yCE1,xCE2,yCE2;
                           ^~~~
../../../src/kernel/gen_vsite.c:560:22: warning: variable 'yCE1' set but not used [-Wunused-but-set-variable]
    real xCG,yCG,xCE1,yCE1,xCE2,yCE2;
                      ^~~~
../../../src/kernel/gen_vsite.c:560:17: warning: variable 'xCE1' set but not used [-Wunused-but-set-variable]
    real xCG,yCG,xCE1,yCE1,xCE2,yCE2;
                 ^~~~
../../../src/kernel/gen_vsite.c:560:13: warning: variable 'yCG' set but not used [-Wunused-but-set-variable]
    real xCG,yCG,xCE1,yCE1,xCE2,yCE2;
             ^~~
../../../src/kernel/gen_vsite.c: In function 'calc_vsite3_param':
../../../src/kernel/gen_vsite.c:693:13: warning: variable 'b_ik' set but not used [-Wunused-but-set-variable]
   real b_ij,b_ik;
             ^~~~
../../../src/kernel/gen_vsite.c:693:8: warning: variable 'b_ij' set but not used [-Wunused-but-set-variable]
   real b_ij,b_ik;
        ^~~~
../../../src/kernel/gen_vsite.c: In function 'gen_vsites_trp':
../../../src/kernel/gen_vsite.c:741:12: warning: unused variable 'c' [-Wunused-variable]
   real a,b,c[MAXFORCEPARAM];
            ^
../../../src/kernel/gen_vsite.c:740:14: warning: unused variable 'mtot' [-Wunused-variable]
   real mwtot,mtot,mM[NMASS],dCBM1,dCBM2,dM1M2;
              ^~~~
../../../src/kernel/gen_vsite.c:740:8: warning: unused variable 'mwtot' [-Wunused-variable]
   real mwtot,mtot,mM[NMASS],dCBM1,dCBM2,dM1M2;
        ^~~~~
../../../src/kernel/gen_vsite.c:738:8: warning: unused variable 'xM' [-Wunused-variable]
   real xM[NMASS];
        ^~
../../../src/kernel/gen_vsite.c:735:8: warning: variable 'a_CB_CG_CD1' set but not used [-Wunused-but-set-variable]
   real a_CB_CG_CD1,a_CD2_CG_CD1,a_CE2_CZ2_HZ2,a_CZ2_CH2_HH2;
        ^~~~~~~~~~~
../../../src/kernel/gen_vsite.c:729:20: warning: unused variable 'dist' [-Wunused-variable]
   real lineA,lineB,dist;
                    ^~~~
../../../src/kernel/gen_vsite.c:729:14: warning: variable 'lineB' set but not used [-Wunused-but-set-variable]
   real lineA,lineB,dist;
              ^~~~~
../../../src/kernel/gen_vsite.c:728:32: warning: unused variable 'I' [-Wunused-variable]
   real xcom[NMASS],ycom[NMASS],I,alpha;
                                ^
../../../src/kernel/gen_vsite.c: In function 'gen_vsites_tyr':
../../../src/kernel/gen_vsite.c:968:8: warning: unused variable 'vmass' [-Wunused-variable]
   real vmass,vdist,mM;
        ^~~~~
../../../src/kernel/gen_vsite.c: In function 'do_vsites':
../../../src/kernel/gen_vsite.c:1332:29: warning: unused variable 'bb' [-Wunused-variable]
   int  Hatoms[4],heavies[4],bb;
                             ^~
In file included from ../../../src/kernel/gen_vsite.c:48:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/gen_vsite.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/gen_vsite.h:43,
                 from ../../../src/kernel/gen_vsite.c:44:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/kernel/gen_vsite.h:41,
                 from ../../../src/kernel/gen_vsite.c:44:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o resall.lo ../../../src/kernel/resall.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/resall.c  -fPIC -DPIC -o .libs/resall.o
In file included from ../../../src/kernel/hackblock.h:42,
                 from ../../../src/kernel/resall.h:41,
                 from ../../../src/kernel/resall.c:49:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/resall.h:41,
                 from ../../../src/kernel/resall.c:49:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o hizzie.lo ../../../src/kernel/hizzie.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/hizzie.c  -fPIC -DPIC -o .libs/hizzie.o
../../../src/kernel/hizzie.c: In function 'set_histp':
../../../src/kernel/hizzie.c:195:8: warning: unused variable 'd' [-Wunused-variable]
   real d;
        ^
../../../src/kernel/hizzie.c:192:27: warning: unused variable 'his0' [-Wunused-variable]
   int  i,j,nd,na,aj,hisnr,his0,type=-1;
                           ^~~~
../../../src/kernel/hizzie.c:192:18: warning: unused variable 'aj' [-Wunused-variable]
   int  i,j,nd,na,aj,hisnr,his0,type=-1;
                  ^~
../../../src/kernel/hizzie.c:188:15: warning: unused variable 'bHaveH' [-Wunused-variable]
   bool *hbond,bHaveH=FALSE;
               ^~~~~~
In file included from ../../../src/kernel/toputil.h:40,
                 from ../../../src/kernel/hizzie.c:48:
At top level:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/hizzie.c:46:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/hizzie.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/hizzie.c:44:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o tomorse.lo ../../../src/kernel/tomorse.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/tomorse.c  -fPIC -DPIC -o .libs/tomorse.o
In file included from ../../../src/kernel/tomorse.c:46:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o pdb2top.lo ../../../src/kernel/pdb2top.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/pdb2top.c  -fPIC -DPIC -o .libs/pdb2top.o
../../../src/kernel/pdb2top.c: In function 'missing_atoms':
../../../src/kernel/pdb2top.c:75:16: warning: unused variable 'bRet' [-Wunused-variable]
   bool bFound, bRet;
                ^~~~
In file included from ../../../src/kernel/topio.h:41,
                 from ../../../src/kernel/pdb2top.c:57:
At top level:
../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable]
 static const char *couple_lam[ecouplamNR+1]    = {
                    ^~~~~~~~~~
../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable]
 static const char *constraints[eshNR+1]    = {
                    ^~~~~~~~~~~
In file included from ../../../src/kernel/readir.h:42,
                 from ../../../src/kernel/topio.h:41,
                 from ../../../src/kernel/pdb2top.c:57:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/pdb2top.h:43,
                 from ../../../src/kernel/pdb2top.c:50:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/kernel/pdb2top.h:41,
                 from ../../../src/kernel/pdb2top.c:50:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/pdb2top.c:44:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/kernel/pdb2top.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/pdb2top.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o readpull.lo ../../../src/kernel/readpull.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/readpull.c  -fPIC -DPIC -o .libs/readpull.o
../../../src/kernel/readpull.c: In function 'read_pullparams':
../../../src/kernel/readpull.c:102:22: warning: unused variable 'nchar' [-Wunused-variable]
   int  ninp,nerror,i,nchar,ndim,nscan,m;
                      ^~~~~
In file included from ../../../src/kernel/readpull.c:54:
At top level:
../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable]
 static const char *couple_lam[ecouplamNR+1]    = {
                    ^~~~~~~~~~
../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable]
 static const char *constraints[eshNR+1]    = {
                    ^~~~~~~~~~~
In file included from ../../../src/kernel/readir.h:43,
                 from ../../../src/kernel/readpull.c:54:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/readpull.c:46:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/readpull.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/readpull.c:45:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o ter_db.lo ../../../src/kernel/ter_db.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/ter_db.c  -fPIC -DPIC -o .libs/ter_db.o
../../../src/kernel/ter_db.c: In function 'print_ter_db':
../../../src/kernel/ter_db.c:105:20: warning: unused variable 'nname' [-Wunused-variable]
   char buf[STRLEN],nname[STRLEN];
                    ^~~~~
../../../src/kernel/ter_db.c: In function 'filter_ter':
../../../src/kernel/ter_db.c:301:12: warning: unused variable 's2' [-Wunused-variable]
   char *s,*s2,*c;
            ^~
../../../src/kernel/ter_db.c:299:13: warning: unused variable 'len' [-Wunused-variable]
   int i,j,n,len,none_idx;
             ^~~
In file included from ../../../src/kernel/hackblock.h:42,
                 from ../../../src/kernel/resall.h:41,
                 from ../../../src/kernel/ter_db.c:45:
At top level:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/resall.h:41,
                 from ../../../src/kernel/ter_db.c:45:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o topdirs.lo ../../../src/kernel/topdirs.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/topdirs.c  -fPIC -DPIC -o .libs/topdirs.o
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o topexcl.lo ../../../src/kernel/topexcl.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/topexcl.c  -fPIC -DPIC -o .libs/topexcl.o
In file included from ../../../include/gpp_nextnb.h:40,
                 from ../../../src/kernel/topexcl.c:45:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o topshake.lo ../../../src/kernel/topshake.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/topshake.c  -fPIC -DPIC -o .libs/topshake.o
../../../src/kernel/topshake.c: In function 'make_shake':
../../../src/kernel/topshake.c:98:19: warning: unused variable 'b' [-Wunused-variable]
   int          nb,b,i,j,ftype,ftype_a;
                   ^
../../../src/kernel/topshake.c:98:16: warning: unused variable 'nb' [-Wunused-variable]
   int          nb,b,i,j,ftype,ftype_a;
                ^~
In file included from ../../../src/kernel/topshake.c:46:
At top level:
../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable]
 static const char *couple_lam[ecouplamNR+1]    = {
                    ^~~~~~~~~~
../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable]
 static const char *constraints[eshNR+1]    = {
                    ^~~~~~~~~~~
In file included from ../../../src/kernel/readir.h:43,
                 from ../../../src/kernel/topshake.c:46:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/readir.h:42,
                 from ../../../src/kernel/topshake.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o specbond.lo ../../../src/kernel/specbond.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/specbond.c  -fPIC -DPIC -o .libs/specbond.o
In file included from ../../../src/kernel/specbond.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/specbond.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/pdb2top.h:41,
                 from ../../../src/kernel/specbond.h:40,
                 from ../../../src/kernel/specbond.c:47:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/specbond.c:43:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
../../../src/kernel/specbond.c: In function 'mk_specbonds':
../../../src/kernel/specbond.c:236:19: warning: '%d' directive writing between 1 and 11 bytes into a region of size 10 [-Wformat-overflow=]
    sprintf(buf,"%s%d",*pdba->resname[pdba->atom[sgp[i]].resnr],
                   ^~
../../../src/kernel/specbond.c:236:16: note: directive argument in the range [-2147483647, 2147483647]
    sprintf(buf,"%s%d",*pdba->resname[pdba->atom[sgp[i]].resnr],
                ^~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../include/typedefs.h:52,
                 from ../../../src/kernel/specbond.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 2 or more bytes (assuming 12) into a destination of size 10
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/kernel/specbond.c:245:19: warning: '%d' directive writing between 1 and 11 bytes into a region of size 10 [-Wformat-overflow=]
    sprintf(buf,"%s%d",*pdba->atomname[sgp[i]], sgp[i]+1);
                   ^~
../../../src/kernel/specbond.c:245:16: note: directive argument in the range [-2147483647, 2147483647]
    sprintf(buf,"%s%d",*pdba->atomname[sgp[i]], sgp[i]+1);
                ^~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../include/typedefs.h:52,
                 from ../../../src/kernel/specbond.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 2 or more bytes (assuming 12) into a destination of size 10
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/kernel/specbond.c:252:19: warning: '%d' directive writing between 1 and 11 bytes into a region of size 10 [-Wformat-overflow=]
    sprintf(buf,"%s%d",*pdba->resname[pdba->atom[sgp[i]].resnr],
                   ^~
../../../src/kernel/specbond.c:252:16: note: directive argument in the range [-2147483647, 2147483647]
    sprintf(buf,"%s%d",*pdba->resname[pdba->atom[sgp[i]].resnr],
                ^~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../include/typedefs.h:52,
                 from ../../../src/kernel/specbond.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 2 or more bytes (assuming 12) into a destination of size 10
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/kernel/specbond.c:255:19: warning: '%d' directive writing between 1 and 11 bytes into a region of size 10 [-Wformat-overflow=]
    sprintf(buf,"%s%d", *pdba->atomname[sgp[i]], sgp[i]+1);
                   ^~
../../../src/kernel/specbond.c:255:16: note: directive argument in the range [-2147483647, 2147483647]
    sprintf(buf,"%s%d", *pdba->atomname[sgp[i]], sgp[i]+1);
                ^~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../include/typedefs.h:52,
                 from ../../../src/kernel/specbond.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 2 or more bytes (assuming 12) into a destination of size 10
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o xlate.lo ../../../src/kernel/xlate.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/xlate.c  -fPIC -DPIC -o .libs/xlate.o
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o glaasje.o ../../../src/kernel/glaasje.c
../../../src/kernel/glaasje.c: In function 'do_glas':
../../../src/kernel/glaasje.c:55:40: warning: unused variable 'r3' [-Wunused-variable]
   real wd,wdd,zi,fz,dd,d10,d4,d9,d3,r9,r3,sign,cc6,cc12;
                                        ^~
../../../src/kernel/glaasje.c:55:37: warning: unused variable 'r9' [-Wunused-variable]
   real wd,wdd,zi,fz,dd,d10,d4,d9,d3,r9,r3,sign,cc6,cc12;
                                     ^~
In file included from ../../../src/kernel/glaasje.c:44:
At top level:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o toputil.lo ../../../src/kernel/toputil.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/toputil.c  -fPIC -DPIC -o .libs/toputil.o
../../../src/kernel/toputil.c:135:13: warning: 'print_nbt' defined but not used [-Wunused-function]
 static void print_nbt (FILE *out,char *title,t_atomtype at,
             ^~~~~~~~~
In file included from ../../../src/kernel/topdirs.h:40,
                 from ../../../src/kernel/toputil.c:45:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gctio.o ../../../src/kernel/gctio.c
In file included from ../../../src/kernel/gctio.c:49:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/xmdrun.h:50,
                 from ../../../src/kernel/gctio.c:41:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o ionize.o ../../../src/kernel/ionize.c
../../../src/kernel/ionize.c: In function 'ionize':
../../../src/kernel/ionize.c:735:2: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
  if (bL)
  ^~
../../../src/kernel/ionize.c:737:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
    if (ephot == 2) E_lost += 0.5; /* Real energy should be 2.5 KeV*/
    ^~
In file included from ../../../src/kernel/ionize.c:48:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/ionize.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o readir.lo ../../../src/kernel/readir.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/readir.c  -fPIC -DPIC -o .libs/readir.o
../../../src/kernel/readir.c: In function 'do_index':
../../../src/kernel/readir.c:1427:38: warning: variable 'nbTS' set but not used [-Wunused-but-set-variable]
     nSAon,nSAoff,nSAsteps,nQMg,nbOPT,nbTS;
                                      ^~~~
../../../src/kernel/readir.c:1427:32: warning: variable 'nbOPT' set but not used [-Wunused-but-set-variable]
     nSAon,nSAoff,nSAsteps,nQMg,nbOPT,nbTS;
                                ^~~~~
../../../src/kernel/readir.c:1427:18: warning: variable 'nSAsteps' set but not used [-Wunused-but-set-variable]
     nSAon,nSAoff,nSAsteps,nQMg,nbOPT,nbTS;
                  ^~~~~~~~
../../../src/kernel/readir.c:1427:11: warning: variable 'nSAoff' set but not used [-Wunused-but-set-variable]
     nSAon,nSAoff,nSAsteps,nQMg,nbOPT,nbTS;
           ^~~~~~
../../../src/kernel/readir.c:1427:5: warning: variable 'nSAon' set but not used [-Wunused-but-set-variable]
     nSAon,nSAoff,nSAsteps,nQMg,nbOPT,nbTS;
     ^~~~~
../../../src/kernel/readir.c:1426:61: warning: variable 'nCASelec' set but not used [-Wunused-but-set-variable]
   int     nQMmethod,nQMbasis,nQMcharge,nQMmult,nbSH,nCASorb,nCASelec,
                                                             ^~~~~~~~
../../../src/kernel/readir.c:1426:53: warning: variable 'nCASorb' set but not used [-Wunused-but-set-variable]
   int     nQMmethod,nQMbasis,nQMcharge,nQMmult,nbSH,nCASorb,nCASelec,
                                                     ^~~~~~~
../../../src/kernel/readir.c:1426:48: warning: variable 'nbSH' set but not used [-Wunused-but-set-variable]
   int     nQMmethod,nQMbasis,nQMcharge,nQMmult,nbSH,nCASorb,nCASelec,
                                                ^~~~
../../../src/kernel/readir.c:1426:40: warning: variable 'nQMmult' set but not used [-Wunused-but-set-variable]
   int     nQMmethod,nQMbasis,nQMcharge,nQMmult,nbSH,nCASorb,nCASelec,
                                        ^~~~~~~
../../../src/kernel/readir.c:1426:30: warning: variable 'nQMcharge' set but not used [-Wunused-but-set-variable]
   int     nQMmethod,nQMbasis,nQMcharge,nQMmult,nbSH,nCASorb,nCASelec,
                              ^~~~~~~~~
../../../src/kernel/readir.c:1424:11: warning: unused variable 'SAtime' [-Wunused-variable]
   real    SAtime;
           ^~~~~~
../../../src/kernel/readir.c: In function 'triple_check':
../../../src/kernel/readir.c:1872:17: warning: unused variable 'npct' [-Wunused-variable]
   int  i,m,nmol,npct;
                 ^~~~
In file included from ../../../src/kernel/readir.c:58:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/readir.c:58:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/readir.h:43,
                 from ../../../src/kernel/readir.c:54:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/readir.c:53:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o toppush.lo ../../../src/kernel/toppush.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/toppush.c  -fPIC -DPIC -o .libs/toppush.o
../../../src/kernel/toppush.c: In function 'push_bt':
../../../src/kernel/toppush.c:573:37: warning: variable 'nrfpB' set but not used [-Wunused-but-set-variable]
   int      i,ft,ftype,nn,nrfp,nrfpA,nrfpB;
                                     ^~~~~
../../../src/kernel/toppush.c: In function 'push_dihedraltype':
../../../src/kernel/toppush.c:661:37: warning: variable 'nrfpB' set but not used [-Wunused-but-set-variable]
   int      i,ft,ftype,nn,nrfp,nrfpA,nrfpB,nral;
                                     ^~~~~
../../../src/kernel/toppush.c: In function 'push_nbt':
../../../src/kernel/toppush.c:778:17: warning: unused variable 'sig6' [-Wunused-variable]
   real    cr[4],sig6;
                 ^~~~
../../../src/kernel/toppush.c:776:23: warning: unused variable 'atnr' [-Wunused-variable]
   int     i,f,n,ftype,atnr,nrfp;
                       ^~~~
../../../src/kernel/toppush.c: In function 'push_atom_now':
../../../src/kernel/toppush.c:871:7: warning: unused variable 'j' [-Wunused-variable]
   int j,resnr_diff=-1;
       ^
../../../src/kernel/toppush.c: In function 'push_bond':
../../../src/kernel/toppush.c:1234:18: warning: unused variable 'paramB' [-Wunused-variable]
   t_param  param,paramB,*param_defA,*param_defB;
                  ^~~~~~
In file included from ../../../src/kernel/toppush.c:51:
At top level:
../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable]
 static const char *couple_lam[ecouplamNR+1]    = {
                    ^~~~~~~~~~
../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable]
 static const char *constraints[eshNR+1]    = {
                    ^~~~~~~~~~~
In file included from ../../../src/kernel/readir.h:42,
                 from ../../../src/kernel/toppush.c:51:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/toputil.h:40,
                 from ../../../src/kernel/toppush.c:48:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
../../../src/kernel/toppush.c: In function 'push_at':
../../../src/kernel/toppush.c:446:41: warning: '%s' directive writing up to 4095 bytes into a region of size 236 [-Wformat-overflow=]
     sprintf(errbuf,"Overriding atomtype %s",type);
                                         ^~  ~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/kernel/toppush.c:43:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 21 and 4116 bytes into a destination of size 256
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o vsite_parm.lo ../../../src/kernel/vsite_parm.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/vsite_parm.c  -fPIC -DPIC -o .libs/vsite_parm.o
../../../src/kernel/vsite_parm.c: In function 'clean_vsite_bonds':
../../../src/kernel/vsite_parm.c:862:62: warning: unused variable 'vsitetype' [-Wunused-variable]
   int      ftype,i,j,parnr,k,l,m,n,nvsite,nOut,kept_i,vsnral,vsitetype;
                                                              ^~~~~~~~~
../../../src/kernel/vsite_parm.c:862:30: warning: unused variable 'l' [-Wunused-variable]
   int      ftype,i,j,parnr,k,l,m,n,nvsite,nOut,kept_i,vsnral,vsitetype;
                              ^
../../../src/kernel/vsite_parm.c:862:22: warning: unused variable 'parnr' [-Wunused-variable]
   int      ftype,i,j,parnr,k,l,m,n,nvsite,nOut,kept_i,vsnral,vsitetype;
                      ^~~~~
../../../src/kernel/vsite_parm.c: In function 'clean_vsite_angles':
../../../src/kernel/vsite_parm.c:1035:51: warning: unused variable 'vsitetype' [-Wunused-variable]
   int      i,j,parnr,k,l,m,n,nvsite,kept_i,vsnral,vsitetype;
                                                   ^~~~~~~~~
../../../src/kernel/vsite_parm.c:1035:24: warning: unused variable 'l' [-Wunused-variable]
   int      i,j,parnr,k,l,m,n,nvsite,kept_i,vsnral,vsitetype;
                        ^
../../../src/kernel/vsite_parm.c:1035:16: warning: unused variable 'parnr' [-Wunused-variable]
   int      i,j,parnr,k,l,m,n,nvsite,kept_i,vsnral,vsitetype;
                ^~~~~
../../../src/kernel/vsite_parm.c: In function 'clean_vsite_dihs':
../../../src/kernel/vsite_parm.c:1130:28: warning: unused variable 'l' [-Wunused-variable]
   int      ftype,i,parnr,k,l,m,n,nvsite,kept_i,vsnral;
                            ^
../../../src/kernel/vsite_parm.c:1130:20: warning: unused variable 'parnr' [-Wunused-variable]
   int      ftype,i,parnr,k,l,m,n,nvsite,kept_i,vsnral;
                    ^~~~~
../../../src/kernel/vsite_parm.c:1130:12: warning: unused variable 'ftype' [-Wunused-variable]
   int      ftype,i,parnr,k,l,m,n,nvsite,kept_i,vsnral;
            ^~~~~
In file included from ../../../src/kernel/vsite_parm.c:47:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/vsite_parm.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/resall.h:41,
                 from ../../../src/kernel/vsite_parm.c:45:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/kernel/vsite_parm.h:41,
                 from ../../../src/kernel/vsite_parm.c:43:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o tpbcmp.lo ../../../src/kernel/tpbcmp.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/tpbcmp.c  -fPIC -DPIC -o .libs/tpbcmp.o
../../../src/kernel/tpbcmp.c: In function 'cmp_block':
../../../src/kernel/tpbcmp.c:242:11: warning: unused variable 'k' [-Wunused-variable]
   int i,j,k;
           ^
../../../src/kernel/tpbcmp.c:242:9: warning: unused variable 'j' [-Wunused-variable]
   int i,j,k;
         ^
../../../src/kernel/tpbcmp.c:242:7: warning: unused variable 'i' [-Wunused-variable]
   int i,j,k;
       ^
../../../src/kernel/tpbcmp.c: In function 'cmp_blocka':
../../../src/kernel/tpbcmp.c:252:11: warning: unused variable 'k' [-Wunused-variable]
   int i,j,k;
           ^
../../../src/kernel/tpbcmp.c:252:9: warning: unused variable 'j' [-Wunused-variable]
   int i,j,k;
         ^
../../../src/kernel/tpbcmp.c:252:7: warning: unused variable 'i' [-Wunused-variable]
   int i,j,k;
       ^
../../../src/kernel/tpbcmp.c: In function 'cmp_atom':
../../../src/kernel/tpbcmp.c:265:8: warning: unused variable 'buf' [-Wunused-variable]
   char buf[256];
        ^~~
../../../src/kernel/tpbcmp.c:264:8: warning: unused variable 'i' [-Wunused-variable]
   int  i;
        ^
../../../src/kernel/tpbcmp.c: In function 'cmp_top':
../../../src/kernel/tpbcmp.c:302:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/kernel/tpbcmp.c: In function 'comp_tpx':
../../../src/kernel/tpbcmp.c:567:15: warning: unused variable 'sh' [-Wunused-variable]
   t_tpxheader sh[2];
               ^~
../../../src/kernel/tpbcmp.c: In function 'comp_enx':
../../../src/kernel/tpbcmp.c:723:38: warning: unused variable 'buf' [-Wunused-variable]
   char       **enm1=NULL,**enm2=NULL,buf[256];
                                      ^~~
../../../src/kernel/tpbcmp.c:721:36: warning: unused variable 'block' [-Wunused-variable]
   int        in1,in2,nre,nre1,nre2,block;
                                    ^~~~~
At top level:
../../../src/kernel/tpbcmp.c:77:13: warning: 'cmp_uc' defined but not used [-Wunused-function]
 static void cmp_uc(FILE *fp,char *s,int index,unsigned char i1,unsigned char i2)
             ^~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/tpbcmp.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o topio.lo ../../../src/kernel/topio.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/topio.c  -fPIC -DPIC -o .libs/topio.o
../../../src/kernel/topio.c: In function 'read_topol':
../../../src/kernel/topio.c:474:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
      else
      ^~~~
../../../src/kernel/topio.c:476:8: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else'
        break;
        ^~~~~
../../../src/kernel/topio.c:314:15: warning: unused variable 'block' [-Wunused-variable]
   t_topology *block=NULL;
               ^~~~~
In file included from ../../../src/kernel/topio.h:41,
                 from ../../../src/kernel/topio.c:66:
At top level:
../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable]
 static const char *couple_lam[ecouplamNR+1]    = {
                    ^~~~~~~~~~
../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable]
 static const char *constraints[eshNR+1]    = {
                    ^~~~~~~~~~~
In file included from ../../../src/kernel/readir.h:42,
                 from ../../../src/kernel/topio.h:41,
                 from ../../../src/kernel/topio.c:66:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/vsite_parm.h:41,
                 from ../../../src/kernel/topio.c:59:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o repl_ex.o ../../../src/kernel/repl_ex.c
../../../src/kernel/repl_ex.c: In function 'init_replica_exchange':
../../../src/kernel/repl_ex.c:111:8: warning: unused variable 'temp' [-Wunused-variable]
   real temp,pres;
        ^~~~
../../../src/kernel/repl_ex.c: In function 'replica_exchange':
../../../src/kernel/repl_ex.c:560:20: warning: unused variable 'shift' [-Wunused-variable]
   int  exchange=-1,shift;
                    ^~~~~
At top level:
../../../src/kernel/repl_ex.c:544:13: warning: 'write_debug_x' defined but not used [-Wunused-function]
 static void write_debug_x(t_state *state)
             ^~~~~~~~~~~~~
In file included from ../../../src/kernel/repl_ex.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/repl_ex.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/repl_ex.c:46:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o do_gct.o ../../../src/kernel/do_gct.c
../../../src/kernel/do_gct.c: In function 'init_coupling':
../../../src/kernel/do_gct.c:63:19: warning: unused variable 'atj' [-Wunused-variable]
   int         ati,atj;
                   ^~~
../../../src/kernel/do_gct.c:63:15: warning: unused variable 'ati' [-Wunused-variable]
   int         ati,atj;
               ^~~
../../../src/kernel/do_gct.c:62:26: warning: unused variable 'j' [-Wunused-variable]
   int         i,nc,index,j;
                          ^
../../../src/kernel/do_gct.c:62:20: warning: unused variable 'index' [-Wunused-variable]
   int         i,nc,index,j;
                    ^~~~~
../../../src/kernel/do_gct.c:62:17: warning: unused variable 'nc' [-Wunused-variable]
   int         i,nc,index,j;
                 ^~
../../../src/kernel/do_gct.c:62:15: warning: unused variable 'i' [-Wunused-variable]
   int         i,nc,index,j;
               ^
../../../src/kernel/do_gct.c: In function 'gprod':
../../../src/kernel/do_gct.c:343:8: warning: unused variable 'i' [-Wunused-variable]
   int  i;
        ^
../../../src/kernel/do_gct.c: In function 'do_coupling':
../../../src/kernel/do_gct.c:489:15: warning: unused variable 'bTest' [-Wunused-variable]
   bool        bTest,bPrint;
               ^~~~~
../../../src/kernel/do_gct.c:487:59: warning: unused variable 'xi12' [-Wunused-variable]
   real        Epol,Eintern,Virial,muabs,xiH=-1,xiS=-1,xi6,xi12;
                                                           ^~~~
../../../src/kernel/do_gct.c:487:55: warning: unused variable 'xi6' [-Wunused-variable]
   real        Epol,Eintern,Virial,muabs,xiH=-1,xiS=-1,xi6,xi12;
                                                       ^~~
../../../src/kernel/do_gct.c:486:32: warning: unused variable 'ffc' [-Wunused-variable]
   real        ff6,ff12,ffa,ffb,ffc,ffq,factor,dt,mu_ind;
                                ^~~
../../../src/kernel/do_gct.c:486:28: warning: unused variable 'ffb' [-Wunused-variable]
   real        ff6,ff12,ffa,ffb,ffc,ffq,factor,dt,mu_ind;
                            ^~~
../../../src/kernel/do_gct.c:486:24: warning: unused variable 'ffa' [-Wunused-variable]
   real        ff6,ff12,ffa,ffb,ffc,ffq,factor,dt,mu_ind;
                        ^~~
../../../src/kernel/do_gct.c:485:60: warning: unused variable 'rmsf' [-Wunused-variable]
   real        deviation[eoObsNR],prdev[eoObsNR],epot0,dist,rmsf;
                                                            ^~~~
At top level:
../../../src/kernel/do_gct.c:457:13: warning: 'dump_fm' defined but not used [-Wunused-function]
 static void dump_fm(FILE *fp,int n,real f[],char *s)
             ^~~~~~~
In file included from ../../../src/kernel/do_gct.c:50:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../include/pull.h:44,
                 from ../../../include/mdrun.h:56,
                 from ../../../src/kernel/do_gct.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../include/pull.h:44,
                 from ../../../include/mdrun.h:56,
                 from ../../../src/kernel/do_gct.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/xmdrun.h:50,
                 from ../../../src/kernel/do_gct.c:41:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o mdrun.o ../../../src/kernel/mdrun.c
../../../src/kernel/mdrun.c: In function 'main':
../../../src/kernel/mdrun.c:387:20: warning: unused variable 'fptest' [-Wunused-variable]
   FILE     *fplog,*fptest;
                    ^~~~~~
../../../src/kernel/mdrun.c:386:12: warning: unused variable 'HaveCheckpoint' [-Wunused-variable]
   bool     HaveCheckpoint;
            ^~~~~~~~~~~~~~
../../../src/kernel/mdrun.c:285:15: warning: unused variable 'bPPPME' [-Wunused-variable]
   static bool bPPPME       = FALSE;
               ^~~~~~
../../../src/kernel/mdrun.c:284:15: warning: unused variable 'bCart' [-Wunused-variable]
   static bool bCart        = FALSE;
               ^~~~~
At top level:
../../../src/kernel/mdrun.c:284:15: warning: 'bCart' defined but not used [-Wunused-variable]
../../../src/kernel/mdrun.c:285:15: warning: 'bPPPME' defined but not used [-Wunused-variable]
   static bool bPPPME       = FALSE;
               ^~~~~~
In file included from ../../../include/pull.h:44,
                 from ../../../include/mdrun.h:56,
                 from ../../../src/kernel/mdrun.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../include/pull.h:44,
                 from ../../../include/mdrun.h:56,
                 from ../../../src/kernel/mdrun.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/mdrun.h:50,
                 from ../../../src/kernel/mdrun.c:49:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/mdrun.c:44:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/mdrun.c:42:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o protonate.o ../../../src/kernel/protonate.c
In file included from ../../../src/kernel/protonate.c:50:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/protonate.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/hackblock.h:42,
                 from ../../../src/kernel/genhydro.h:41,
                 from ../../../src/kernel/protonate.c:47:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/genhydro.h:40,
                 from ../../../src/kernel/protonate.c:47:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/protonate.c:45:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/protonate.c:43:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o luck.o ../../../src/kernel/luck.c
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/luck.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/luck.c:41:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmxdump.o ../../../src/kernel/gmxdump.c
../../../src/kernel/gmxdump.c: In function 'list_tpx':
../../../src/kernel/gmxdump.c:146:16: warning: left-hand operand of comma expression has no effect [-Wunused-value]
       if (state,tpx.bF) {
                ^
../../../src/kernel/gmxdump.c:99:20: warning: unused variable 'fp' [-Wunused-variable]
   int         step,fp,indent,i,j,**gcount,atot;
                    ^~
../../../src/kernel/gmxdump.c: In function 'list_ene':
../../../src/kernel/gmxdump.c:314:17: warning: unused variable 'ndr' [-Wunused-variable]
   int        in,ndr;
                 ^~~
At top level:
../../../src/kernel/gmxdump.c:65:13: warning: 'dump_top' defined but not used [-Wunused-function]
 static void dump_top(FILE *fp,t_topology *top,char *tpr)
             ^~~~~~~~
In file included from ../../../src/kernel/gmxdump.c:47:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/gmxdump.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o xutils.o ../../../src/kernel/xutils.c
../../../src/kernel/xutils.c: In function 'calc_mu_aver':
../../../src/kernel/xutils.c:65:19: warning: variable 'end' set but not used [-Wunused-but-set-variable]
   int     i,start,end;
                   ^~~
../../../src/kernel/xutils.c: In function 'update_forcefield':
../../../src/kernel/xutils.c:335:10: warning: unused variable 'bDone' [-Wunused-variable]
   bool   bDone;
          ^~~~~
In file included from ../../../src/kernel/xutils.c:45:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/xutils.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/xmdrun.h:50,
                 from ../../../src/kernel/xutils.c:44:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmxcheck.o ../../../src/kernel/gmxcheck.c
../../../src/kernel/gmxcheck.c: In function 'tpx2system':
../../../src/kernel/gmxcheck.c:90:7: warning: unused variable 'i' [-Wunused-variable]
   int i,nmol,nvsite=0;
       ^
../../../src/kernel/gmxcheck.c: In function 'tpx2methods':
../../../src/kernel/gmxcheck.c:140:15: warning: unused variable 'i' [-Wunused-variable]
   int         i,step;
               ^
../../../src/kernel/gmxcheck.c:136:15: warning: unused variable 'sh' [-Wunused-variable]
   t_tpxheader sh;
               ^~
../../../src/kernel/gmxcheck.c: In function 'chk_bonds':
../../../src/kernel/gmxcheck.c:202:26: warning: variable 'devtot' set but not used [-Wunused-but-set-variable]
   real b0,blen,deviation,devtot;
                          ^~~~~~
../../../src/kernel/gmxcheck.c:201:14: warning: unused variable 'i' [-Wunused-variable]
   int  ftype,i,k,ai,aj,type;
              ^
../../../src/kernel/gmxcheck.c: In function 'chk_trj':
../../../src/kernel/gmxcheck.c:252:35: warning: unused variable 'bOK' [-Wunused-variable]
   bool         bShowTimestep=TRUE,bOK,newline=FALSE;
                                   ^~~
../../../src/kernel/gmxcheck.c:251:40: warning: unused variable 'prec' [-Wunused-variable]
   real         rdum,t,tt,old_t1,old_t2,prec;
                                        ^~~~
../../../src/kernel/gmxcheck.c:251:23: warning: unused variable 'tt' [-Wunused-variable]
   real         rdum,t,tt,old_t1,old_t2,prec;
                       ^~
../../../src/kernel/gmxcheck.c:251:16: warning: unused variable 'rdum' [-Wunused-variable]
   real         rdum,t,tt,old_t1,old_t2,prec;
                ^~~~
../../../src/kernel/gmxcheck.c:250:16: warning: variable 'fpos' set but not used [-Wunused-but-set-variable]
   off_t        fpos;
                ^~~~
../../../src/kernel/gmxcheck.c: In function 'chk_ndx':
../../../src/kernel/gmxcheck.c:526:10: warning: unused variable 'j' [-Wunused-variable]
   int  i,j;
          ^
../../../src/kernel/gmxcheck.c: In function 'chk_enx':
../../../src/kernel/gmxcheck.c:550:25: warning: unused variable 'ndr' [-Wunused-variable]
   int        in,nre,fnr,ndr;
                         ^~~
In file included from ../../../src/kernel/gmxcheck.c:57:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/gmxcheck.c:57:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/gmxcheck.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/gmxcheck.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o x2top.o ../../../src/kernel/x2top.c
../../../src/kernel/x2top.c: In function 'set_cgnr':
../../../src/kernel/x2top.c:178:15: warning: unused variable 'mt' [-Wunused-variable]
   double qt=0,mt=0;
               ^~
../../../src/kernel/x2top.c: In function 'set_force_const':
../../../src/kernel/x2top.c:255:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/kernel/x2top.c: In function 'main':
../../../src/kernel/x2top.c:419:15: warning: unused variable 'scale' [-Wunused-variable]
   static real scale = 1.1, kb = 4e5,kt = 400,kp = 5;
               ^~~~~
../../../src/kernel/x2top.c:411:14: warning: unused variable 'cutoff' [-Wunused-variable]
   real       cutoff,qtot,mtot;
              ^~~~~~
../../../src/kernel/x2top.c:408:24: warning: unused variable 'ndih' [-Wunused-variable]
   int        i,j,k,l,m,ndih;
                        ^~~~
../../../src/kernel/x2top.c:408:22: warning: unused variable 'm' [-Wunused-variable]
   int        i,j,k,l,m,ndih;
                      ^
../../../src/kernel/x2top.c:408:20: warning: unused variable 'l' [-Wunused-variable]
   int        i,j,k,l,m,ndih;
                    ^
../../../src/kernel/x2top.c:408:18: warning: unused variable 'k' [-Wunused-variable]
   int        i,j,k,l,m,ndih;
                  ^
../../../src/kernel/x2top.c:408:16: warning: unused variable 'j' [-Wunused-variable]
   int        i,j,k,l,m,ndih;
                ^
../../../src/kernel/x2top.c:408:14: warning: unused variable 'i' [-Wunused-variable]
   int        i,j,k,l,m,ndih;
              ^
../../../src/kernel/x2top.c:407:14: warning: unused variable 'nres' [-Wunused-variable]
   int        nres;         /* number of molecules? */
              ^~~~
At top level:
../../../src/kernel/x2top.c:419:15: warning: 'scale' defined but not used [-Wunused-variable]
   static real scale = 1.1, kb = 4e5,kt = 400,kp = 5;
               ^~~~~
../../../src/kernel/x2top.c:117:12: warning: 'get_atype' defined but not used [-Wunused-function]
 static int get_atype(char *nm)
            ^~~~~~~~~
../../../src/kernel/x2top.c:80:13: warning: 'set_x_blen' defined but not used [-Wunused-function]
 static real set_x_blen(real scale)
             ^~~~~~~~~~
In file included from ../../../src/kernel/topio.h:41,
                 from ../../../src/kernel/gen_ad.h:42,
                 from ../../../src/kernel/x2top.c:60:
../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable]
 static const char *couple_lam[ecouplamNR+1]    = {
                    ^~~~~~~~~~
../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable]
 static const char *constraints[eshNR+1]    = {
                    ^~~~~~~~~~~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/pdb2top.h:43,
                 from ../../../src/kernel/x2top.c:59:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/kernel/toputil.h:40,
                 from ../../../src/kernel/toppush.h:41,
                 from ../../../src/kernel/x2top.c:58:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/x2top.c:52:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/x2top.c:51:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/x2top.c:42:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/kernel/x2top.c:40:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nm2type.o ../../../src/kernel/nm2type.c
../../../src/kernel/nm2type.c: In function 'rd_nm2type':
../../../src/kernel/nm2type.c:72:20: warning: unused variable 'blen' [-Wunused-variable]
   double    qq,mm,*blen;
                    ^~~~
../../../src/kernel/nm2type.c: In function 'nm2type':
../../../src/kernel/nm2type.c:160:38: warning: unused variable 'quality' [-Wunused-variable]
   int *bbb,*n_mask,*m_mask,**match,**quality;
                                      ^~~~~~~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/pdb2top.h:43,
                 from ../../../src/kernel/nm2type.c:59:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/kernel/toputil.h:40,
                 from ../../../src/kernel/toppush.h:41,
                 from ../../../src/kernel/nm2type.c:58:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/nm2type.c:52:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/nm2type.c:51:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/nm2type.c:44:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/kernel/nm2type.c:42:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o genalg.o ../../../src/kernel/genalg.c
../../../src/kernel/genalg.c: In function 'update_ga':
../../../src/kernel/genalg.c:197:12: warning: unused variable 'j' [-Wunused-variable]
   int   i, j, L, n;      /* counting variables                 */
            ^
In file included from ../../../src/kernel/genalg.c:75:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/genalg.c:75:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o tpbconv.o ../../../src/kernel/tpbconv.c
../../../src/kernel/tpbconv.c: In function 'main':
../../../src/kernel/tpbconv.c:365:7: warning: unused variable 'nerror' [-Wunused-variable]
   int nerror = 0;
       ^~~~~~
../../../src/kernel/tpbconv.c:325:17: warning: unused variable 'gopts' [-Wunused-variable]
   t_gromppopts *gopts;
                 ^~~~~
../../../src/kernel/tpbconv.c:324:21: warning: unused variable 'irnew' [-Wunused-variable]
   t_inputrec   *ir,*irnew=NULL;
                     ^~~~~
../../../src/kernel/tpbconv.c:318:33: warning: unused variable 'nsteps_org' [-Wunused-variable]
   int          i,frame,run_step,nsteps_org;
                                 ^~~~~~~~~~
In file included from ../../../src/kernel/tpbconv.c:56:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/tpbconv.c:56:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/tpbconv.c:54:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/kernel/tpbconv.c:52:
../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable]
 static const char *couple_lam[ecouplamNR+1]    = {
                    ^~~~~~~~~~
../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable]
 static const char *constraints[eshNR+1]    = {
                    ^~~~~~~~~~~
In file included from ../../../src/kernel/readir.h:43,
                 from ../../../src/kernel/tpbconv.c:52:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/readir.h:42,
                 from ../../../src/kernel/tpbconv.c:52:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o libgmxpreprocess.la  add_par.lo compute_io.lo convparm.lo gen_ad.lo gen_vsite.lo genhydro.lo gmxcpp.lo gpp_atomtype.lo gpp_bond_atomtype.lo h_db.lo hackblock.lo hizzie.lo pdb2top.lo pgutil.lo readir.lo readpull.lo resall.lo sorting.lo specbond.lo ter_db.lo tomorse.lo topdirs.lo topexcl.lo topio.lo toppush.lo topshake.lo toputil.lo tpbcmp.lo vsite_parm.lo xlate.lo  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
ar cru .libs/libgmxpreprocess.a .libs/add_par.o .libs/compute_io.o .libs/convparm.o .libs/gen_ad.o .libs/gen_vsite.o .libs/genhydro.o .libs/gmxcpp.o .libs/gpp_atomtype.o .libs/gpp_bond_atomtype.o .libs/h_db.o .libs/hackblock.o .libs/hizzie.o .libs/pdb2top.o .libs/pgutil.o .libs/readir.o .libs/readpull.o .libs/resall.o .libs/sorting.o .libs/specbond.o .libs/ter_db.o .libs/tomorse.o .libs/topdirs.o .libs/topexcl.o .libs/topio.o .libs/toppush.o .libs/topshake.o .libs/toputil.o .libs/tpbcmp.o .libs/vsite_parm.o .libs/xlate.o
ranlib .libs/libgmxpreprocess.a
creating libgmxpreprocess.la
(cd .libs && rm -f libgmxpreprocess.la && ln -s ../libgmxpreprocess.la libgmxpreprocess.la)
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o md.o ../../../src/kernel/md.c
../../../src/kernel/md.c: In function 'mdrunner':
../../../src/kernel/md.c:140:15: warning: unused variable 'gro' [-Wunused-variable]
   char       *gro;
               ^~~
../../../src/kernel/md.c:139:45: warning: unused variable 'nalloc' [-Wunused-variable]
   int        i,m,nChargePerturbed=-1,status,nalloc;
                                             ^~~~~~
../../../src/kernel/md.c:139:16: warning: unused variable 'm' [-Wunused-variable]
   int        i,m,nChargePerturbed=-1,status,nalloc;
                ^
../../../src/kernel/md.c:139:14: warning: unused variable 'i' [-Wunused-variable]
   int        i,m,nChargePerturbed=-1,status,nalloc;
              ^
../../../src/kernel/md.c:128:20: warning: unused variable 'tmpr2' [-Wunused-variable]
   real       tmpr1,tmpr2;
                    ^~~~~
../../../src/kernel/md.c:128:14: warning: unused variable 'tmpr1' [-Wunused-variable]
   real       tmpr1,tmpr2;
              ^~~~~
../../../src/kernel/md.c: In function 'do_md':
../../../src/kernel/md.c:533:16: warning: unused variable 'grpname' [-Wunused-variable]
   char        *grpname;
                ^~~~~~~
../../../src/kernel/md.c:525:15: warning: unused variable 'timestep' [-Wunused-variable]
   real        timestep=0;
               ^~~~~~~~
In file included from ../../../include/pppm.h:46,
                 from ../../../src/kernel/md.c:69:
At top level:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/md.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/md.c:45:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/md.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o luck luck.o libgmxpreprocess.la ../mdlib/libmd.la ../gmxlib/libgmx.la  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -o .libs/luck luck.o  ./.libs/libgmxpreprocess.a -lgslcblas -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath 
creating luck
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o gmxdump gmxdump.o libgmxpreprocess.la ../mdlib/libmd.la ../gmxlib/libgmx.la  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -o .libs/gmxdump gmxdump.o  ./.libs/libgmxpreprocess.a -lgslcblas -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath 
creating gmxdump
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o tpbconv tpbconv.o libgmxpreprocess.la ../mdlib/libmd.la ../gmxlib/libgmx.la  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -o .libs/tpbconv tpbconv.o  ./.libs/libgmxpreprocess.a -lgslcblas -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath 
creating tpbconv
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o pdb2gmx.o ../../../src/kernel/pdb2gmx.c
../../../src/kernel/pdb2gmx.c:149:20: warning: 'get_cystp' defined but not used [-Wunused-function]
 static const char *get_cystp(int resnr)
                    ^~~~~~~~~
In file included from ../../../src/kernel/toputil.h:40,
                 from ../../../src/kernel/pdb2gmx.c:55:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/pdb2gmx.c:54:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/pdb2gmx.c:51:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/pdb2gmx.c:50:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/pdb2gmx.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/pdb2gmx.c:46:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
../../../src/kernel/pdb2gmx.c: In function 'main':
../../../src/kernel/pdb2gmx.c:783:18: warning: '.rtp' directive writing 4 bytes into a region of size between 1 and 4096 [-Wformat-overflow=]
   sprintf(rtp,"%s.rtp",forcefield);
                  ^~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/kernel/pdb2gmx.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 5 and 4100 bytes into a destination of size 4096
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/kernel/pdb2gmx.c:1162:31: warning: '%s' directive writing up to 4095 bytes into a region of size 4089 [-Wformat-overflow=]
       sprintf(molname,"Protein%s",suffix);
                               ^~  ~~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/kernel/pdb2gmx.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 8 and 4103 bytes into a destination of size 4096
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/kernel/pdb2gmx.c:1176:22: warning: '_pr.itp' directive writing 7 bytes into a region of size between 1 and 4096 [-Wformat-overflow=]
  sprintf(posre_fn,"%s_pr.itp",buf_fn);
                      ^~~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/kernel/pdb2gmx.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 8 and 4103 bytes into a destination of size 4096
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o gmxcheck gmxcheck.o libgmxpreprocess.la ../mdlib/libmd.la ../gmxlib/libgmx.la  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -o .libs/gmxcheck gmxcheck.o  ./.libs/libgmxpreprocess.a -lgslcblas -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath 
creating gmxcheck
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o protonate protonate.o libgmxpreprocess.la ../mdlib/libmd.la ../gmxlib/libgmx.la  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -o .libs/protonate protonate.o  ./.libs/libgmxpreprocess.a -lgslcblas -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath 
creating protonate
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o grompp grompp.o libgmxpreprocess.la ../mdlib/libmd.la ../gmxlib/libgmx.la  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -o .libs/grompp grompp.o  ./.libs/libgmxpreprocess.a -lgslcblas -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath 
creating grompp
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o x2top x2top.o nm2type.o libgmxpreprocess.la ../mdlib/libmd.la ../gmxlib/libgmx.la  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -o .libs/x2top x2top.o nm2type.o  ./.libs/libgmxpreprocess.a -lgslcblas -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath 
creating x2top
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o mdrun glaasje.o gctio.o ionize.o do_gct.o repl_ex.o xutils.o md.o mdrun.o genalg.o libgmxpreprocess.la ../mdlib/libmd.la ../gmxlib/libgmx.la  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -o .libs/mdrun glaasje.o gctio.o ionize.o do_gct.o repl_ex.o xutils.o md.o mdrun.o genalg.o  ./.libs/libgmxpreprocess.a -lgslcblas -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath 
creating mdrun
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o pdb2gmx pdb2gmx.o libgmxpreprocess.la ../mdlib/libmd.la ../gmxlib/libgmx.la  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -o .libs/pdb2gmx pdb2gmx.o  ./.libs/libgmxpreprocess.a -lgslcblas -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath 
creating pdb2gmx
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
Making all in tools
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o polynomials.lo ../../../src/tools/polynomials.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/polynomials.c  -fPIC -DPIC -o .libs/polynomials.o
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/polynomials.c:44:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dlist.lo ../../../src/tools/dlist.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/dlist.c  -fPIC -DPIC -o .libs/dlist.o
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/dlist.c:44:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o do_dssp.o ../../../src/tools/do_dssp.c
../../../src/tools/do_dssp.c: In function 'main':
../../../src/tools/do_dssp.c:347:16: warning: unused variable 'j' [-Wunused-variable]
   int        i,j,natoms,nframe=0;
                ^
In file included from ../../../src/tools/do_dssp.c:49:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/tools/do_dssp.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/do_dssp.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o pp2shift.lo ../../../src/tools/pp2shift.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/pp2shift.c  -fPIC -DPIC -o .libs/pp2shift.o
In file included from ../../../src/tools/pp2shift.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/pp2shift.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o expfit.lo ../../../src/tools/expfit.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/expfit.c  -fPIC -DPIC -o .libs/expfit.o
In file included from ../../../src/tools/expfit.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/expfit.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/expfit.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o anadih.lo ../../../src/tools/anadih.c
mkdir .libs
mkdir: cannot create directory '.libs': File exists
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/anadih.c  -fPIC -DPIC -o .libs/anadih.o
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/anadih.c:51:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/anadih.c:50:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/anadih.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o lsq.lo ../../../src/tools/lsq.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/lsq.c  -fPIC -DPIC -o .libs/lsq.o
In file included from ../../../src/tools/lsq.c:42:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/lsq.c:42:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/lsq.c:41:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o levenmar.lo ../../../src/tools/levenmar.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/levenmar.c  -fPIC -DPIC -o .libs/levenmar.o
../../../src/tools/levenmar.c:224:13: warning: 'free_convert_matrix' defined but not used [-Wunused-function]
 static void free_convert_matrix(real **b, int nrl)
             ^~~~~~~~~~~~~~~~~~~
../../../src/tools/levenmar.c:208:15: warning: 'convert_matrix' defined but not used [-Wunused-function]
 static real **convert_matrix(real *a, int nrl, int nrh, int ncl, int nch)
               ^~~~~~~~~~~~~~
../../../src/tools/levenmar.c:201:13: warning: 'free_submatrix' defined but not used [-Wunused-function]
 static void free_submatrix(real **b, int nrl)
             ^~~~~~~~~~~~~~
../../../src/tools/levenmar.c:191:13: warning: 'free_imatrix' defined but not used [-Wunused-function]
 static void free_imatrix(int **m, int nrl, int nrh, int ncl)
             ^~~~~~~~~~~~
../../../src/tools/levenmar.c:183:13: warning: 'free_dmatrix' defined but not used [-Wunused-function]
 static void free_dmatrix(double **m, int nrl, int nrh, int ncl)
             ^~~~~~~~~~~~
../../../src/tools/levenmar.c:168:13: warning: 'free_dvector' defined but not used [-Wunused-function]
 static void free_dvector(int *v, int nl)
             ^~~~~~~~~~~~
../../../src/tools/levenmar.c:141:15: warning: 'submatrix' defined but not used [-Wunused-function]
 static real **submatrix(real **a, int oldrl, int oldrh, int oldcl,
               ^~~~~~~~~
../../../src/tools/levenmar.c:123:14: warning: 'imatrix1' defined but not used [-Wunused-function]
 static int **imatrix1(int nrl, int nrh, int ncl, int nch)
              ^~~~~~~~
../../../src/tools/levenmar.c:106:17: warning: 'dmatrix' defined but not used [-Wunused-function]
 static double **dmatrix(int nrl, int nrh, int ncl, int nch)
                 ^~~~~~~
../../../src/tools/levenmar.c:78:16: warning: 'dvector' defined but not used [-Wunused-function]
 static double *dvector(int nl, int nh)
                ^~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o cmat.lo ../../../src/tools/cmat.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/cmat.c  -fPIC -DPIC -o .libs/cmat.o
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o fitahx.lo ../../../src/tools/fitahx.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/fitahx.c  -fPIC -DPIC -o .libs/fitahx.o
In file included from ../../../src/tools/fitahx.c:41:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/fitahx.c:41:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o eigio.lo ../../../src/tools/eigio.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/eigio.c  -fPIC -DPIC -o .libs/eigio.o
In file included from ../../../src/tools/eigio.c:41:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/eigio.c:41:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o eigensolver.lo ../../../src/tools/eigensolver.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/eigensolver.c  -fPIC -DPIC -o .libs/eigensolver.o
../../../src/tools/eigensolver.c: In function 'eigensolver':
../../../src/tools/eigensolver.c:65:16: warning: unused variable 'iu' [-Wunused-variable]
     int     il,iu,m,iw0,info;
                ^~
../../../src/tools/eigensolver.c:65:13: warning: unused variable 'il' [-Wunused-variable]
     int     il,iu,m,iw0,info;
             ^~
../../../src/tools/eigensolver.c: In function 'sparse_eigensolver':
../../../src/tools/eigensolver.c:296:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
     for(i=0;i<11;i++)
     ^~~
../../../src/tools/eigensolver.c:299:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
  iparam[0] = 1;       /* Don't use explicit shifts */
  ^~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o autocorr.lo ../../../src/tools/autocorr.c
mkdir .libs
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/autocorr.c  -fPIC -DPIC -o .libs/autocorr.o
In file included from ../../../include/gmx_fft.h:41,
                 from ../../../src/tools/correl.h:40,
                 from ../../../src/tools/autocorr.c:53:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/tools/autocorr.c:51:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/autocorr.c:51:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/autocorr.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o hxprops.lo ../../../src/tools/hxprops.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/hxprops.c  -fPIC -DPIC -o .libs/hxprops.o
../../../src/tools/hxprops.c: In function 'ellipticity':
../../../src/tools/hxprops.c:85:14: warning: unused variable 'Xi' [-Wunused-variable]
   const real Xi=1.0;
              ^~
In file included from ../../../src/tools/hxprops.c:46:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/hxprops.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_bond.lo ../../../src/tools/gmx_bond.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_bond.c  -fPIC -DPIC -o .libs/gmx_bond.o
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_bond.c:51:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_bond.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_bond.c:45:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_bond.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_analyze.lo ../../../src/tools/gmx_analyze.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_analyze.c  -fPIC -DPIC -o .libs/gmx_analyze.o
../../../src/tools/gmx_analyze.c: In function 'luzar_correl':
../../../src/tools/gmx_analyze.c:514:8: warning: unused variable 'weight' [-Wunused-variable]
   real weight,d2;
        ^~~~~~
../../../src/tools/gmx_analyze.c:512:14: warning: unused variable 'tol' [-Wunused-variable]
   const real tol = 1e-8;
              ^~~
../../../src/tools/gmx_analyze.c: In function 'gmx_analyze':
../../../src/tools/gmx_analyze.c:744:63: warning: unused variable 'bLuzarError' [-Wunused-variable]
   static bool bIntegrate=FALSE,bRegression=FALSE,bLuzar=FALSE,bLuzarError=FALSE;
                                                               ^~~~~~~~~~~
At top level:
../../../src/tools/gmx_analyze.c:744:63: warning: 'bLuzarError' defined but not used [-Wunused-variable]
../../../src/tools/gmx_analyze.c:273:13: warning: 'anal_ee' defined but not used [-Wunused-function]
 static real anal_ee(real *parm,real T,real t)
             ^~~~~~~
In file included from ../../../src/tools/gmx_analyze.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_analyze.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_analyze.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_analyze.c:41:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_angle.lo ../../../src/tools/gmx_angle.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_angle.c  -fPIC -DPIC -o .libs/gmx_angle.o
../../../src/tools/gmx_angle.c: In function 'gmx_angle':
../../../src/tools/gmx_angle.c:147:14: warning: unused variable 'buf' [-Wunused-variable]
   char       buf[80];
              ^~~
../../../src/tools/gmx_angle.c:143:38: warning: unused variable 'fraction' [-Wunused-variable]
   real       t,aa,aver,aver2,aversig,fraction;       /* fraction trans dihedrals */
                                      ^~~~~~~~
../../../src/tools/gmx_angle.c:143:16: warning: unused variable 'aa' [-Wunused-variable]
   real       t,aa,aver,aver2,aversig,fraction;       /* fraction trans dihedrals */
                ^~
../../../src/tools/gmx_angle.c:143:14: warning: unused variable 't' [-Wunused-variable]
   real       t,aa,aver,aver2,aversig,fraction;       /* fraction trans dihedrals */
              ^
../../../src/tools/gmx_angle.c:138:55: warning: unused variable 'angind' [-Wunused-variable]
   int        i,j,total,nangles,natoms,nat2,first,last,angind;
                                                       ^~~~~~
../../../src/tools/gmx_angle.c:138:39: warning: unused variable 'nat2' [-Wunused-variable]
   int        i,j,total,nangles,natoms,nat2,first,last,angind;
                                       ^~~~
../../../src/tools/gmx_angle.c:138:32: warning: unused variable 'natoms' [-Wunused-variable]
   int        i,j,total,nangles,natoms,nat2,first,last,angind;
                                ^~~~~~
../../../src/tools/gmx_angle.c:138:18: warning: unused variable 'total' [-Wunused-variable]
   int        i,j,total,nangles,natoms,nat2,first,last,angind;
                  ^~~~~
../../../src/tools/gmx_angle.c:135:21: warning: unused variable 'Jc' [-Wunused-variable]
   real       maxang,Jc,S2,norm_fac,maxstat;
                     ^~
../../../src/tools/gmx_angle.c:132:14: warning: unused variable 'status' [-Wunused-variable]
   int        status,isize;
              ^~~~~~
../../../src/tools/gmx_angle.c:131:14: warning: unused variable 'tmp' [-Wunused-variable]
   real       tmp,dt;
              ^~~
In file included from ../../../src/tools/gmx_angle.c:49:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_angle.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_angle.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_angle.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nsc.lo ../../../src/tools/nsc.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/nsc.c  -fPIC -DPIC -o .libs/nsc.o
../../../src/tools/nsc.c: In function 'make_unsp':
../../../src/tools/nsc.c:446:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
   if (xpunsp) free(xpunsp); if (ico_wk) free(ico_wk);
   ^~
../../../src/tools/nsc.c:446:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
   if (xpunsp) free(xpunsp); if (ico_wk) free(ico_wk);
                             ^~
../../../src/tools/nsc.c: In function 'nsc_dclm_pbc':
../../../src/tools/nsc.c:652:21: warning: unused variable 'm' [-Wunused-variable]
     int    ix,iy,iz,m;
                     ^
../../../src/tools/nsc.c:551:16: warning: unused variable 'jat_xx' [-Wunused-variable]
   int   iat_xx,jat_xx;
                ^~~~~~
In file included from ../../../src/tools/nsc.c:48:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/nsc.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_chi.lo ../../../src/tools/gmx_chi.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_chi.c  -fPIC -DPIC -o .libs/gmx_chi.o
../../../src/tools/gmx_chi.c: In function 'histogramming':
../../../src/tools/gmx_chi.c:418:23: warning: unused variable 'his_aa1' [-Wunused-variable]
   int     ***his_aa,**his_aa1,*histmp;
                       ^~~~~~~
../../../src/tools/gmx_chi.c: In function 'print_transitions':
../../../src/tools/gmx_chi.c:834:8: warning: variable 'nh' set but not used [-Wunused-but-set-variable]
   int  nh[edMax];
        ^~
../../../src/tools/gmx_chi.c: In function 'gmx_chi':
../../../src/tools/gmx_chi.c:1098:16: warning: unused variable 'j' [-Wunused-variable]
   int        i,j,**chi_lookup,*xity;
                ^
In file included from ../../../src/tools/gmx_chi.c:59:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/tools/gmx_chi.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/gmx_chi.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_chi.c:44:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_chi.c:43:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../src/tools/gmx_chi.c: In function 'histogramming.isra.1':
../../../src/tools/gmx_chi.c:657:30: warning: '.xvg' directive writing 4 bytes into a region of size between 0 and 255 [-Wformat-overflow=]
      sprintf(sshisfile,"%s-%s.xvg",hisfile,sss[k]);
                              ^~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../src/tools/gmx_chi.c:39:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 6 or more bytes (assuming 261) into a destination of size 256
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_bundle.lo ../../../src/tools/gmx_bundle.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_bundle.c  -fPIC -DPIC -o .libs/gmx_bundle.o
../../../src/tools/gmx_bundle.c: In function 'dump_axes':
../../../src/tools/gmx_bundle.c:141:17: warning: unused variable 'end' [-Wunused-variable]
   int         i,end;
                 ^~~
../../../src/tools/gmx_bundle.c: In function 'gmx_bundle':
../../../src/tools/gmx_bundle.c:210:16: warning: unused variable 'j' [-Wunused-variable]
   int        i,j,gnx[MAX_ENDS];
                ^
../../../src/tools/gmx_bundle.c:208:14: warning: unused variable 'natoms' [-Wunused-variable]
   int        natoms;
              ^~~~~~
../../../src/tools/gmx_bundle.c:198:15: warning: unused variable 'out' [-Wunused-variable]
   FILE       *out,*flen,*fdist,*fz,*ftilt,*ftiltr,*ftiltl;
               ^~~
In file included from ../../../src/tools/gmx_bundle.c:48:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_bundle.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_bundle.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_bundle.c:42:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_confrms.lo ../../../src/tools/gmx_confrms.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_confrms.c  -fPIC -DPIC -o .libs/gmx_confrms.o
../../../src/tools/gmx_confrms.c: In function 'find_matching_names':
../../../src/tools/gmx_confrms.c:252:35: warning: unused variable 'atnm2' [-Wunused-variable]
   char *resnm1, *resnm2, *atnm1, *atnm2;
                                   ^~~~~
../../../src/tools/gmx_confrms.c:252:27: warning: unused variable 'atnm1' [-Wunused-variable]
   char *resnm1, *resnm2, *atnm1, *atnm2;
                           ^~~~~
../../../src/tools/gmx_confrms.c:252:18: warning: unused variable 'resnm2' [-Wunused-variable]
   char *resnm1, *resnm2, *atnm1, *atnm2;
                  ^~~~~~
../../../src/tools/gmx_confrms.c:252:9: warning: unused variable 'resnm1' [-Wunused-variable]
   char *resnm1, *resnm2, *atnm1, *atnm2;
         ^~~~~~
../../../src/tools/gmx_confrms.c:249:7: warning: unused variable 'r' [-Wunused-variable]
   int r,rnr1, rnr2, prnr1, prnr2;
       ^
../../../src/tools/gmx_confrms.c:247:7: warning: unused variable 'i' [-Wunused-variable]
   int i, i1, i2, ii1, ii2, m1, m2;
       ^
../../../src/tools/gmx_confrms.c: In function 'gmx_confrms':
../../../src/tools/gmx_confrms.c:407:17: warning: unused variable 'tmas2' [-Wunused-variable]
   real    tmas1,tmas2;
                 ^~~~~
../../../src/tools/gmx_confrms.c:407:11: warning: unused variable 'tmas1' [-Wunused-variable]
   real    tmas1,tmas2;
           ^~~~~
../../../src/tools/gmx_confrms.c:404:13: warning: unused variable 'j' [-Wunused-variable]
   int     i,j,m;
             ^
In file included from ../../../src/tools/gmx_confrms.c:56:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/tools/gmx_confrms.c:50:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_confrms.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_confrms.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_confrms.c:46:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_covar.lo ../../../src/tools/gmx_covar.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_covar.c  -fPIC -DPIC -o .libs/gmx_covar.o
../../../src/tools/gmx_covar.c: In function 'gmx_covar':
../../../src/tools/gmx_covar.c:120:30: warning: unused variable 'count' [-Wunused-variable]
   int        natoms,nat,ndim,count,nframes0,nframes,nlevels;
                              ^~~~~
../../../src/tools/gmx_covar.c:119:24: warning: unused variable 'step' [-Wunused-variable]
   int        ntopatoms,step;
                        ^~~~
../../../src/tools/gmx_covar.c:119:14: warning: unused variable 'ntopatoms' [-Wunused-variable]
   int        ntopatoms,step;
              ^~~~~~~~~
../../../src/tools/gmx_covar.c:109:21: warning: unused variable 'trjout' [-Wunused-variable]
   int        status,trjout;
                     ^~~~~~
In file included from ../../../src/tools/gmx_covar.c:50:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_covar.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_covar.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_covar.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_cluster.lo ../../../src/tools/gmx_cluster.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_cluster.c  -fPIC -DPIC -o .libs/gmx_cluster.o
../../../src/tools/gmx_cluster.c: In function 'mark_clusters':
../../../src/tools/gmx_cluster.c:638:11: warning: unused variable 'v' [-Wunused-variable]
   int i,j,v;
           ^
../../../src/tools/gmx_cluster.c: In function 'gmx_cluster':
../../../src/tools/gmx_cluster.c:1341:7: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
       for(i=0; (i<nf); i++)
       ^~~
../../../src/tools/gmx_cluster.c:1343:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
           ffclose(fp);
           ^~~~~~~
In file included from ../../../src/tools/gmx_cluster.c:49:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_cluster.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_cluster.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_cluster.c:45:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_density.lo ../../../src/tools/gmx_density.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_density.c  -fPIC -DPIC -o .libs/gmx_density.o
../../../src/tools/gmx_density.c: In function 'calc_density':
../../../src/tools/gmx_density.c:261:9: warning: unused variable 'buf' [-Wunused-variable]
   char *buf;             /* for tmp. keeping atomname */
         ^~~
../../../src/tools/gmx_density.c:254:9: warning: unused variable 'j' [-Wunused-variable]
       i,j,n,               /* loop indices */
         ^
../../../src/tools/gmx_density.c:253:9: warning: unused variable 'slCount' [-Wunused-variable]
       **slCount,         /* nr. of atoms in one slice for a group */
         ^~~~~~~
In file included from ../../../src/tools/gmx_density.c:52:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_density.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_density.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/gmx_density.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_spatial.lo ../../../src/tools/gmx_spatial.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_spatial.c  -fPIC -DPIC -o .libs/gmx_spatial.o
../../../src/tools/gmx_spatial.c: In function 'gmx_spatial':
../../../src/tools/gmx_spatial.c:131:21: warning: unused variable 'shx' [-Wunused-variable]
   rvec       *xtop,*shx[26];
                     ^~~
../../../src/tools/gmx_spatial.c:103:15: warning: unused variable 'bSHIFT' [-Wunused-variable]
   static bool bSHIFT=FALSE;
               ^~~~~~
At top level:
../../../src/tools/gmx_spatial.c:103:15: warning: 'bSHIFT' defined but not used [-Wunused-variable]
In file included from ../../../src/tools/gmx_spatial.c:44:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_spatial.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_spatial.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_spatial.c:40:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
../../../src/tools/gmx_spatial.c:38:14: warning: 'SRCID_template_c' defined but not used [-Wunused-variable]
 static char *SRCID_template_c = "$Id$";
              ^~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_anaeig.lo ../../../src/tools/gmx_anaeig.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_anaeig.c  -fPIC -DPIC -o .libs/gmx_anaeig.o
../../../src/tools/gmx_anaeig.c: In function 'calc_entropy_schlitter':
../../../src/tools/gmx_anaeig.c:98:10: warning: unused variable 'buf' [-Wunused-variable]
   char   buf[256];
          ^~~
../../../src/tools/gmx_anaeig.c:97:16: warning: unused variable 'm' [-Wunused-variable]
   int    i,j,k,m;
                ^
../../../src/tools/gmx_anaeig.c:97:14: warning: unused variable 'k' [-Wunused-variable]
   int    i,j,k,m;
              ^
../../../src/tools/gmx_anaeig.c:97:12: warning: unused variable 'j' [-Wunused-variable]
   int    i,j,k,m;
            ^
../../../src/tools/gmx_anaeig.c:96:11: warning: unused variable 'indx' [-Wunused-variable]
   int    *indx;
           ^~~~
../../../src/tools/gmx_anaeig.c: In function 'compare':
../../../src/tools/gmx_anaeig.c:224:12: warning: unused variable 'nrow' [-Wunused-variable]
   int    n,nrow;
            ^~~~
../../../src/tools/gmx_anaeig.c: In function 'rmsf':
../../../src/tools/gmx_anaeig.c:692:9: warning: unused variable 'nrow' [-Wunused-variable]
   int   nrow,g,v,i;
         ^~~~
../../../src/tools/gmx_anaeig.c: In function 'gmx_anaeig':
../../../src/tools/gmx_anaeig.c:1015:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
     if (i!=natoms)
     ^~
../../../src/tools/gmx_anaeig.c:1017:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
       printf("\n");
       ^~~~~~
../../../src/tools/gmx_anaeig.c:835:21: warning: unused variable 'step' [-Wunused-variable]
   int        natoms,step;
                     ^~~~
../../../src/tools/gmx_anaeig.c:834:42: warning: unused variable 'lambda' [-Wunused-variable]
   real       xid,totmass,*sqrtm,*w_rls,t,lambda;
                                          ^~~~~~
../../../src/tools/gmx_anaeig.c:834:14: warning: unused variable 'xid' [-Wunused-variable]
   real       xid,totmass,*sqrtm,*w_rls,t,lambda;
              ^~~
../../../src/tools/gmx_anaeig.c:832:18: warning: unused variable 'xread' [-Wunused-variable]
   rvec       *x,*xread,*xav1,*xav2,**eigvec1=NULL,**eigvec2=NULL;
                  ^~~~~
../../../src/tools/gmx_anaeig.c:832:15: warning: unused variable 'x' [-Wunused-variable]
   rvec       *x,*xread,*xav1,*xav2,**eigvec1=NULL,**eigvec2=NULL;
               ^
../../../src/tools/gmx_anaeig.c:825:21: warning: unused variable 'trjout' [-Wunused-variable]
   int        status,trjout;
                     ^~~~~~
../../../src/tools/gmx_anaeig.c:825:14: warning: unused variable 'status' [-Wunused-variable]
   int        status,trjout;
              ^~~~~~
../../../src/tools/gmx_anaeig.c:824:15: warning: unused variable 'out' [-Wunused-variable]
   FILE       *out;
               ^~~
In file included from ../../../src/tools/gmx_anaeig.c:53:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
In file included from ../../../src/tools/gmx_anaeig.c:49:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_anaeig.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_anaeig.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_anaeig.c:41:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_dielectric.lo ../../../src/tools/gmx_dielectric.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_dielectric.c  -fPIC -DPIC -o .libs/gmx_dielectric.o
../../../src/tools/gmx_dielectric.c: In function 'calc_nbegin':
../../../src/tools/gmx_dielectric.c:60:11: warning: unused variable 'dtt' [-Wunused-variable]
   real dt,dtt;
           ^~~
../../../src/tools/gmx_dielectric.c:60:8: warning: unused variable 'dt' [-Wunused-variable]
   real dt,dtt;
        ^~
In file included from ../../../src/tools/gmx_dielectric.c:53:
At top level:
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/tools/gmx_dielectric.c:51:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/gmx_dielectric.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_dielectric.c:44:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_dih.lo ../../../src/tools/gmx_dih.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_dih.c  -fPIC -DPIC -o .libs/gmx_dih.o
../../../src/tools/gmx_dih.c:55:13: warning: 'dump_dih' defined but not used [-Wunused-function]
 static void dump_dih(int nframes,char *title,real time[],real dih[])
             ^~~~~~~~
In file included from ../../../src/tools/gmx_dih.c:51:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_dih.c:51:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_dih.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_dih.c:43:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
../../../src/tools/gmx_dih.c: In function 'gmx_dih':
../../../src/tools/gmx_dih.c:265:22: warning: '%d' directive writing between 1 and 10 bytes into a region of size 6 [-Wformat-overflow=]
     sprintf(buf,"dih-%d",i);
                      ^~
../../../src/tools/gmx_dih.c:265:17: note: directive argument in the range [0, 1073741823]
     sprintf(buf,"dih-%d",i);
                 ^~~~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/tools/gmx_dih.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 6 and 15 bytes into a destination of size 10
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_dyndom.lo ../../../src/tools/gmx_dyndom.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_dyndom.c  -fPIC -DPIC -o .libs/gmx_dyndom.o
../../../src/tools/gmx_dyndom.c: In function 'rot_conf':
../../../src/tools/gmx_dyndom.c:60:14: warning: unused variable 'j' [-Wunused-variable]
   int      i,j,ai;
              ^
../../../src/tools/gmx_dyndom.c:58:43: warning: unused variable 'temp43' [-Wunused-variable]
   mat4     temp1,temp2,temp3,temp4,temp21,temp43;
                                           ^~~~~~
../../../src/tools/gmx_dyndom.c:58:36: warning: unused variable 'temp21' [-Wunused-variable]
   mat4     temp1,temp2,temp3,temp4,temp21,temp43;
                                    ^~~~~~
../../../src/tools/gmx_dyndom.c:58:30: warning: unused variable 'temp4' [-Wunused-variable]
   mat4     temp1,temp2,temp3,temp4,temp21,temp43;
                              ^~~~~
../../../src/tools/gmx_dyndom.c:57:49: warning: unused variable 'Tx' [-Wunused-variable]
   mat4     Rx,Ry,Rz,Rinvy,Rinvz,Mtot,Tcm,Tinvcm,Tx;
                                                 ^~
../../../src/tools/gmx_dyndom.c:57:42: warning: unused variable 'Tinvcm' [-Wunused-variable]
   mat4     Rx,Ry,Rz,Rinvy,Rinvz,Mtot,Tcm,Tinvcm,Tx;
                                          ^~~~~~
../../../src/tools/gmx_dyndom.c:57:38: warning: unused variable 'Tcm' [-Wunused-variable]
   mat4     Rx,Ry,Rz,Rinvy,Rinvz,Mtot,Tcm,Tinvcm,Tx;
                                      ^~~
../../../src/tools/gmx_dyndom.c:55:18: warning: unused variable 'center' [-Wunused-variable]
   rvec     arrow,center,xcm;
                  ^~~~~~
In file included from ../../../src/tools/gmx_dyndom.c:47:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_dyndom.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_dyndom.c:43:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_dyndom.c:41:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_densmap.lo ../../../src/tools/gmx_densmap.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_densmap.c  -fPIC -DPIC -o .libs/gmx_densmap.o
In file included from ../../../src/tools/gmx_densmap.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_densmap.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_densmap.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_densmap.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_kinetics.lo ../../../src/tools/gmx_kinetics.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_kinetics.c  -fPIC -DPIC -o .libs/gmx_kinetics.o
../../../src/tools/gmx_kinetics.c: In function 'epnm':
../../../src/tools/gmx_kinetics.c:96:16: warning: unused variable 'ii' [-Wunused-variable]
   int    nn,ni,ii;
                ^~
../../../src/tools/gmx_kinetics.c:96:13: warning: unused variable 'ni' [-Wunused-variable]
   int    nn,ni,ii;
             ^~
../../../src/tools/gmx_kinetics.c:96:10: warning: unused variable 'nn' [-Wunused-variable]
   int    nn,ni,ii;
          ^~
../../../src/tools/gmx_kinetics.c:95:31: warning: unused variable 'to' [-Wunused-variable]
   static char buf[32],from[8],to[8];
                               ^~
../../../src/tools/gmx_kinetics.c:95:23: warning: unused variable 'from' [-Wunused-variable]
   static char buf[32],from[8],to[8];
                       ^~~~
../../../src/tools/gmx_kinetics.c:95:15: warning: unused variable 'buf' [-Wunused-variable]
   static char buf[32],from[8],to[8];
               ^~~
../../../src/tools/gmx_kinetics.c: In function 'dump_remd_parameters':
../../../src/tools/gmx_kinetics.c:559:8: warning: unused variable 'rhs' [-Wunused-variable]
   real rhs,tauf,taub,fff,DG;
        ^~~
At top level:
../../../src/tools/gmx_kinetics.c:95:15: warning: 'buf' defined but not used [-Wunused-variable]
   static char buf[32],from[8],to[8];
               ^~~
../../../src/tools/gmx_kinetics.c:95:23: warning: 'from' defined but not used [-Wunused-variable]
   static char buf[32],from[8],to[8];
                       ^~~~
../../../src/tools/gmx_kinetics.c:95:31: warning: 'to' defined but not used [-Wunused-variable]
   static char buf[32],from[8],to[8];
                               ^~
../../../src/tools/gmx_kinetics.c:85:14: warning: 'itoa' defined but not used [-Wunused-function]
 static char *itoa(int i)
              ^~~~
In file included from ../../../src/tools/gmx_kinetics.c:49:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_kinetics.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_kinetics.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_kinetics.c:42:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_dist.lo ../../../src/tools/gmx_dist.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_dist.c  -fPIC -DPIC -o .libs/gmx_dist.o
../../../src/tools/gmx_dist.c: In function 'gmx_dist':
../../../src/tools/gmx_dist.c:101:21: warning: unused variable 'fplt' [-Wunused-variable]
   FILE    *fp=NULL,*fplt=NULL;
                     ^~~~
../../../src/tools/gmx_dist.c:93:11: warning: unused variable 'aid' [-Wunused-variable]
   atom_id aid;
           ^~~
../../../src/tools/gmx_dist.c:87:17: warning: unused variable 'v' [-Wunused-variable]
   rvec *x=NULL,*v=NULL,dx;
                 ^
In file included from ../../../src/tools/gmx_dist.c:48:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_dist.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_dist.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_dist.c:45:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_current.lo ../../../src/tools/gmx_current.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_current.c  -fPIC -DPIC -o .libs/gmx_current.o
../../../src/tools/gmx_current.c: In function 'calc_mjdsp':
../../../src/tools/gmx_current.c:266:7: warning: unused variable 'rfr' [-Wunused-variable]
  real rfr;
       ^~~
../../../src/tools/gmx_current.c:265:8: warning: unused variable 'rtmp' [-Wunused-variable]
  real  rtmp;
        ^~~~
../../../src/tools/gmx_current.c: In function 'dielectric':
../../../src/tools/gmx_current.c:338:8: warning: variable 'rest' set but not used [-Wunused-but-set-variable]
   real rest=0.0;
        ^~~~
../../../src/tools/gmx_current.c:326:8: warning: unused variable 'qtmp' [-Wunused-variable]
   real qtmp;
        ^~~~
../../../src/tools/gmx_current.c:308:13: warning: unused variable 'dm_d' [-Wunused-variable]
   real dm_s,dm_d;
             ^~~~
../../../src/tools/gmx_current.c:308:8: warning: unused variable 'dm_s' [-Wunused-variable]
   real dm_s,dm_d;
        ^~~~
../../../src/tools/gmx_current.c:298:8: warning: unused variable 'rfr' [-Wunused-variable]
   real rfr=0.0;
        ^~~
../../../src/tools/gmx_current.c:293:33: warning: variable 'itrust' set but not used [-Wunused-but-set-variable]
   int  valloc,nalloc,nfr,nvfr,m,itrust=0;
                                 ^~~~~~
../../../src/tools/gmx_current.c:293:31: warning: unused variable 'm' [-Wunused-variable]
   int  valloc,nalloc,nfr,nvfr,m,itrust=0;
                               ^
../../../src/tools/gmx_current.c:292:17: warning: unused variable 'f' [-Wunused-variable]
   int   i,j,k,l,f;
                 ^
../../../src/tools/gmx_current.c:292:15: warning: unused variable 'l' [-Wunused-variable]
   int   i,j,k,l,f;
               ^
../../../src/tools/gmx_current.c:292:13: warning: unused variable 'k' [-Wunused-variable]
   int   i,j,k,l,f;
             ^
../../../src/tools/gmx_current.c: In function 'gmx_current':
../../../src/tools/gmx_current.c:720:15: warning: unused variable 'tfile' [-Wunused-variable]
   FILE       *tfile=NULL;
               ^~~~~
../../../src/tools/gmx_current.c:719:15: warning: unused variable 'outi' [-Wunused-variable]
   FILE       *outi=NULL;
               ^~~~
../../../src/tools/gmx_current.c:716:14: warning: unused variable 'lambda' [-Wunused-variable]
   real       lambda;
              ^~~~~~
../../../src/tools/gmx_current.c:715:13: warning: unused variable 't' [-Wunused-variable]
   real      t;
             ^
../../../src/tools/gmx_current.c:714:14: warning: unused variable 'step' [-Wunused-variable]
   int        step;
              ^~~~
../../../src/tools/gmx_current.c:713:21: warning: unused variable 'l' [-Wunused-variable]
   int       i,j,k=0,l;
                     ^
../../../src/tools/gmx_current.c:713:17: warning: unused variable 'k' [-Wunused-variable]
   int       i,j,k=0,l;
                 ^
../../../src/tools/gmx_current.c:713:15: warning: unused variable 'j' [-Wunused-variable]
   int       i,j,k=0,l;
               ^
../../../src/tools/gmx_current.c:711:12: warning: unused variable 'natoms' [-Wunused-variable]
   int      natoms;
            ^~~~~~
../../../src/tools/gmx_current.c:707:10: warning: variable 'bNEU' set but not used [-Wunused-but-set-variable]
   bool   bNEU;
          ^~~~
../../../src/tools/gmx_current.c:706:13: warning: variable 'bTop' set but not used [-Wunused-but-set-variable]
   bool      bTop;
             ^~~~
In file included from ../../../src/tools/gmx_current.c:44:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_current.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_current.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_current.c:40:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_disre.lo ../../../src/tools/gmx_disre.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_disre.c  -fPIC -DPIC -o .libs/gmx_disre.o
../../../src/tools/gmx_disre.c: In function 'check_viol':
../../../src/tools/gmx_disre.c:144:11: warning: variable 'ener' set but not used [-Wunused-but-set-variable]
   real    ener,rt,mviol,tviol,viol,lam,dvdl,drt;
           ^~~~
../../../src/tools/gmx_disre.c: In function 'dump_disre_matrix':
../../../src/tools/gmx_disre.c:449:12: warning: unused variable 'iii' [-Wunused-variable]
   int      iii,i,j,nra,nratoms,tp,ri,rj,index,nlabel,label;
            ^~~
In file included from ../../../src/tools/gmx_disre.c:57:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/tools/gmx_disre.c:54:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_disre.c:53:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_disre.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_disre.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_disre.c:44:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_lie.lo ../../../src/tools/gmx_lie.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_lie.c  -fPIC -DPIC -o .libs/gmx_lie.o
In file included from ../../../src/tools/gmx_lie.c:52:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_lie.c:51:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_lie.c:51:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_lie.c:45:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_enemat.lo ../../../src/tools/gmx_enemat.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_enemat.c  -fPIC -DPIC -o .libs/gmx_enemat.o
In file included from ../../../src/tools/gmx_enemat.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_enemat.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_enemat.c:45:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_enemat.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_h2order.lo ../../../src/tools/gmx_h2order.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_h2order.c  -fPIC -DPIC -o .libs/gmx_h2order.o
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_h2order.c:54:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_h2order.c:52:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_h2order.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_h2order.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_gyrate.lo ../../../src/tools/gmx_gyrate.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_gyrate.c  -fPIC -DPIC -o .libs/gmx_gyrate.o
../../../src/tools/gmx_gyrate.c: In function 'gmx_gyrate':
../../../src/tools/gmx_gyrate.c:190:14: warning: unused variable 'i' [-Wunused-variable]
   int        i,j,m,gnx,nam,mol;
              ^
In file included from ../../../src/tools/gmx_gyrate.c:50:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_gyrate.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_gyrate.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_gyrate.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_filter.lo ../../../src/tools/gmx_filter.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_filter.c  -fPIC -DPIC -o .libs/gmx_filter.o
In file included from ../../../src/tools/gmx_filter.c:53:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_filter.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_filter.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_filter.c:42:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_dipoles.lo ../../../src/tools/gmx_dipoles.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_dipoles.c  -fPIC -DPIC -o .libs/gmx_dipoles.o
../../../src/tools/gmx_dipoles.c: In function 'do_gkr':
../../../src/tools/gmx_dipoles.c:156:17: warning: unused variable 'r2' [-Wunused-variable]
   real   qtot,q,r2,cosa,rr,phi;
                 ^~
../../../src/tools/gmx_dipoles.c:155:30: warning: unused variable 'index' [-Wunused-variable]
   int    gi,gj,j0,j1,i,j,k,n,index,grp0,grp1;
                              ^~~~~
../../../src/tools/gmx_dipoles.c: In function 'print_gkrbin':
../../../src/tools/gmx_dipoles.c:291:14: warning: unused variable 'n' [-Wunused-variable]
   int    i,j,n,last;
              ^
../../../src/tools/gmx_dipoles.c:291:12: warning: unused variable 'j' [-Wunused-variable]
   int    i,j,n,last;
            ^
../../../src/tools/gmx_dipoles.c: In function 'mol_quad':
../../../src/tools/gmx_dipoles.c:418:17: warning: unused variable 'rcom_n' [-Wunused-variable]
   real   rcom_m,rcom_n;
                 ^~~~~~
../../../src/tools/gmx_dipoles.c:418:10: warning: unused variable 'rcom_m' [-Wunused-variable]
   real   rcom_m,rcom_n;
          ^~~~~~
../../../src/tools/gmx_dipoles.c: In function 'compute_avercos':
../../../src/tools/gmx_dipoles.c:580:19: warning: unused variable 'n5' [-Wunused-variable]
   double dc,dc1,d,n5,ddc1,ddc2,ddc3;
                   ^~
../../../src/tools/gmx_dipoles.c:580:13: warning: unused variable 'dc1' [-Wunused-variable]
   double dc,dc1,d,n5,ddc1,ddc2,ddc3;
             ^~~
../../../src/tools/gmx_dipoles.c: In function 'do_dip':
../../../src/tools/gmx_dipoles.c:872:8: warning: unused variable 'gi' [-Wunused-variable]
    int gi,ind0,ind1;
        ^~
../../../src/tools/gmx_dipoles.c:675:27: warning: unused variable 'Vol' [-Wunused-variable]
   t_lsq      Mx,My,Mz,Msq,Vol;
                           ^~~
../../../src/tools/gmx_dipoles.c:675:23: warning: unused variable 'Msq' [-Wunused-variable]
   t_lsq      Mx,My,Mz,Msq,Vol;
                       ^~~
../../../src/tools/gmx_dipoles.c:675:20: warning: unused variable 'Mz' [-Wunused-variable]
   t_lsq      Mx,My,Mz,Msq,Vol;
                    ^~
../../../src/tools/gmx_dipoles.c:675:17: warning: unused variable 'My' [-Wunused-variable]
   t_lsq      Mx,My,Mz,Msq,Vol;
                 ^~
../../../src/tools/gmx_dipoles.c:675:14: warning: unused variable 'Mx' [-Wunused-variable]
   t_lsq      Mx,My,Mz,Msq,Vol;
              ^~
../../../src/tools/gmx_dipoles.c:668:32: warning: unused variable 'lambda' [-Wunused-variable]
   real       rcut=0,t,t0,t1,dt,lambda,dd,rms_cos;
                                ^~~~~~
../../../src/tools/gmx_dipoles.c:667:25: warning: unused variable 'buf' [-Wunused-variable]
   char       **enm=NULL,buf[STRLEN];
                         ^~~
../../../src/tools/gmx_dipoles.c:665:44: warning: unused variable 'step' [-Wunused-variable]
   int        *dipole_bin,ndipbin,ibin,iVol,step,idim=-1;
                                            ^~~~
../../../src/tools/gmx_dipoles.c:664:32: warning: unused variable 'nmol' [-Wunused-variable]
   int        i,j,k,n,m,natom=0,nmol,status,gnx_tot,teller,tel3;
                                ^~~~
../../../src/tools/gmx_dipoles.c:664:18: warning: unused variable 'k' [-Wunused-variable]
   int        i,j,k,n,m,natom=0,nmol,status,gnx_tot,teller,tel3;
                  ^
../../../src/tools/gmx_dipoles.c:664:16: warning: unused variable 'j' [-Wunused-variable]
   int        i,j,k,n,m,natom=0,nmol,status,gnx_tot,teller,tel3;
                ^
../../../src/tools/gmx_dipoles.c: In function 'gmx_dipoles':
../../../src/tools/gmx_dipoles.c:1271:16: warning: unused variable 'bCorr' [-Wunused-variable]
   bool         bCorr,bQuad,bGkr,bMU,bSlab;
                ^~~~~
../../../src/tools/gmx_dipoles.c:1227:31: warning: unused variable 'bMolCorr' [-Wunused-variable]
   static bool bAverCorr=FALSE,bMolCorr=FALSE,bPairs=TRUE,bPhi=FALSE;
                               ^~~~~~~~
../../../src/tools/gmx_dipoles.c:1227:15: warning: variable 'bAverCorr' set but not used [-Wunused-but-set-variable]
   static bool bAverCorr=FALSE,bMolCorr=FALSE,bPairs=TRUE,bPhi=FALSE;
               ^~~~~~~~~
At top level:
../../../src/tools/gmx_dipoles.c:1227:31: warning: 'bMolCorr' defined but not used [-Wunused-variable]
   static bool bAverCorr=FALSE,bMolCorr=FALSE,bPairs=TRUE,bPhi=FALSE;
                               ^~~~~~~~
In file included from ../../../src/tools/gmx_dipoles.c:49:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_dipoles.c:46:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_dipoles.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_dipoles.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_helix.lo ../../../src/tools/gmx_helix.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_helix.c  -fPIC -DPIC -o .libs/gmx_helix.o
../../../src/tools/gmx_helix.c: In function 'gmx_helix':
../../../src/tools/gmx_helix.c:213:21: warning: unused variable 'nre' [-Wunused-variable]
   int        natoms,nre,nres,step;
                     ^~~
In file included from ../../../src/tools/gmx_helix.c:62:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/tools/gmx_helix.c:51:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/gmx_helix.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_helix.c:43:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_morph.lo ../../../src/tools/gmx_morph.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_morph.c  -fPIC -DPIC -o .libs/gmx_morph.o
In file included from ../../../src/tools/gmx_morph.c:44:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_morph.c:40:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_nmens.lo ../../../src/tools/gmx_nmens.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_nmens.c  -fPIC -DPIC -o .libs/gmx_nmens.o
../../../src/tools/gmx_nmens.c: In function 'gmx_nmens':
../../../src/tools/gmx_nmens.c:105:14: warning: unused variable 'eigvalnr' [-Wunused-variable]
   int *      eigvalnr;
              ^~~~~~~~
../../../src/tools/gmx_nmens.c:104:19: warning: unused variable 'invfr' [-Wunused-variable]
   real       rfac,invfr,rhalf,jr;
                   ^~~~~
../../../src/tools/gmx_nmens.c:99:21: warning: unused variable 'neigval' [-Wunused-variable]
   int        natoms,neigval;
                     ^~~~~~~
../../../src/tools/gmx_nmens.c:98:22: warning: unused variable 'totmass' [-Wunused-variable]
   real       *eigval,totmass,*invsqrtm,t,disp;
                      ^~~~~~~
../../../src/tools/gmx_nmens.c:89:21: warning: unused variable 'trjout' [-Wunused-variable]
   int        status,trjout;
                     ^~~~~~
../../../src/tools/gmx_nmens.c:89:14: warning: unused variable 'status' [-Wunused-variable]
   int        status,trjout;
              ^~~~~~
In file included from ../../../src/tools/gmx_nmens.c:54:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/tools/gmx_nmens.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_nmens.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_nmens.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_nmens.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_mindist.lo ../../../src/tools/gmx_mindist.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_mindist.c  -fPIC -DPIC -o .libs/gmx_mindist.o
../../../src/tools/gmx_mindist.c: In function 'periodic_mindist_plot':
../../../src/tools/gmx_mindist.c:114:10: warning: unused variable 'r' [-Wunused-variable]
   real   r,rmin,rmax,rmint,tmint;
          ^
../../../src/tools/gmx_mindist.c: In function 'dist_plot':
../../../src/tools/gmx_mindist.c:245:16: warning: unused variable 'frout' [-Wunused-variable]
   t_trxframe   frout;
                ^~~~~
../../../src/tools/gmx_mindist.c: In function 'gmx_mindist':
../../../src/tools/gmx_mindist.c:473:15: warning: unused variable 'j' [-Wunused-variable]
   int       i,j,nres=0;
               ^
../../../src/tools/gmx_mindist.c:472:14: warning: unused variable 'atm' [-Wunused-variable]
   FILE      *atm;
              ^~~
../../../src/tools/gmx_mindist.c:467:14: warning: unused variable 't' [-Wunused-variable]
   real       t;
              ^
../../../src/tools/gmx_mindist.c:441:16: warning: unused variable 'bugs' [-Wunused-variable]
   static char *bugs[] = {
                ^~~~
At top level:
../../../src/tools/gmx_mindist.c:441:16: warning: 'bugs' defined but not used [-Wunused-variable]
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_mindist.c:53:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_mindist.c:51:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_mindist.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_mindist.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_nmeig.lo ../../../src/tools/gmx_nmeig.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_nmeig.c  -fPIC -DPIC -o .libs/gmx_nmeig.o
../../../src/tools/gmx_nmeig.c: In function 'nma_full_hessian':
../../../src/tools/gmx_nmeig.c:76:19: warning: unused variable 'rdum' [-Wunused-variable]
     real mass_fac,rdum;
                   ^~~~
../../../src/tools/gmx_nmeig.c: In function 'gmx_nmeig':
../../../src/tools/gmx_nmeig.c:229:15: warning: unused variable 'index' [-Wunused-variable]
   atom_id    *index;
               ^~~~~
../../../src/tools/gmx_nmeig.c:227:24: warning: unused variable 'gnx' [-Wunused-variable]
   int        i,j,k,l,d,gnx;
                        ^~~
../../../src/tools/gmx_nmeig.c:227:22: warning: unused variable 'd' [-Wunused-variable]
   int        i,j,k,l,d,gnx;
                      ^
../../../src/tools/gmx_nmeig.c:227:20: warning: unused variable 'l' [-Wunused-variable]
   int        i,j,k,l,d,gnx;
                    ^
../../../src/tools/gmx_nmeig.c:226:15: warning: unused variable 'grpname' [-Wunused-variable]
   char       *grpname,title[256];
               ^~~~~~~
../../../src/tools/gmx_nmeig.c:225:36: warning: unused variable 'count' [-Wunused-variable]
   int        natoms,ndim,nrow,ncol,count;
                                    ^~~~~
../../../src/tools/gmx_nmeig.c:224:19: warning: unused variable 'mass_fac' [-Wunused-variable]
   real       rdum,mass_fac;
                   ^~~~~~~~
../../../src/tools/gmx_nmeig.c:224:14: warning: unused variable 'rdum' [-Wunused-variable]
   real       rdum,mass_fac;
              ^~~~
../../../src/tools/gmx_nmeig.c:217:21: warning: unused variable 'trjout' [-Wunused-variable]
   int        status,trjout;
                     ^~~~~~
../../../src/tools/gmx_nmeig.c:217:14: warning: unused variable 'status' [-Wunused-variable]
   int        status,trjout;
              ^~~~~~
In file included from ../../../src/tools/gmx_nmeig.c:50:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_nmeig.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_nmeig.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_nmeig.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_principal.lo ../../../src/tools/gmx_principal.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_principal.c  -fPIC -DPIC -o .libs/gmx_principal.o
../../../src/tools/gmx_principal.c: In function 'gmx_principal':
../../../src/tools/gmx_principal.c:97:20: warning: unused variable 'a3' [-Wunused-variable]
   rvec       a1,a2,a3,moi;
                    ^~
../../../src/tools/gmx_principal.c:97:17: warning: unused variable 'a2' [-Wunused-variable]
   rvec       a1,a2,a3,moi;
                 ^~
../../../src/tools/gmx_principal.c:97:14: warning: unused variable 'a1' [-Wunused-variable]
   rvec       a1,a2,a3,moi;
              ^~
../../../src/tools/gmx_principal.c:95:28: warning: unused variable 'mol' [-Wunused-variable]
   int        i,j,m,gnx,nam,mol;
                            ^~~
../../../src/tools/gmx_principal.c:95:24: warning: unused variable 'nam' [-Wunused-variable]
   int        i,j,m,gnx,nam,mol;
                        ^~~
../../../src/tools/gmx_principal.c:95:18: warning: unused variable 'm' [-Wunused-variable]
   int        i,j,m,gnx,nam,mol;
                  ^
../../../src/tools/gmx_principal.c:95:16: warning: unused variable 'j' [-Wunused-variable]
   int        i,j,m,gnx,nam,mol;
                ^
../../../src/tools/gmx_principal.c:95:14: warning: unused variable 'i' [-Wunused-variable]
   int        i,j,m,gnx,nam,mol;
              ^
In file included from ../../../src/tools/gmx_principal.c:50:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_principal.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_principal.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_principal.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_msd.lo ../../../src/tools/gmx_msd.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_msd.c  -fPIC -DPIC -o .libs/gmx_msd.o
../../../src/tools/gmx_msd.c: In function 'printmol':
../../../src/tools/gmx_msd.c:455:13: warning: unused variable 'r' [-Wunused-variable]
   real  a,b,r,D,Dav,D2av,VarD,sqrtD,sqrtD_max,scale;
             ^
../../../src/tools/gmx_msd.c:452:14: warning: unused variable 'out_pdb' [-Wunused-variable]
   FILE  *out,out_pdb;
              ^~~~~~~
At top level:
../../../src/tools/gmx_msd.c:144:13: warning: 'done_corr' defined but not used [-Wunused-function]
 static void done_corr(t_corr *this)
             ^~~~~~~~~
In file included from ../../../src/tools/gmx_msd.c:57:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/tools/gmx_msd.c:51:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_msd.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_msd.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_msd.c:57:
../../../src/tools/gmx_msd.c: In function 'corr_loop':
../../../include/vec.h:362:8: warning: '*((void *)&com+8)' may be used uninitialized in this function [-Wmaybe-uninitialized]
   b[ZZ]=a[ZZ];
   ~~~~~^~~~~~
../../../src/tools/gmx_msd.c:525:29: note: '*((void *)&com+8)' was declared here
   rvec         *x[2],*xa[2],com;
                             ^~~
In file included from ../../../src/tools/gmx_msd.c:57:
../../../include/vec.h:361:8: warning: '*((void *)&com+4)' may be used uninitialized in this function [-Wmaybe-uninitialized]
   b[YY]=a[YY];
   ~~~~~^~~~~~
../../../src/tools/gmx_msd.c:525:29: note: '*((void *)&com+4)' was declared here
   rvec         *x[2],*xa[2],com;
                             ^~~
In file included from ../../../src/tools/gmx_msd.c:57:
../../../include/vec.h:360:8: warning: 'com' may be used uninitialized in this function [-Wmaybe-uninitialized]
   b[XX]=a[XX];
   ~~~~~^~~~~~
../../../src/tools/gmx_msd.c:525:29: note: 'com' was declared here
   rvec         *x[2],*xa[2],com;
                             ^~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_order.lo ../../../src/tools/gmx_order.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_order.c  -fPIC -DPIC -o .libs/gmx_order.o
../../../src/tools/gmx_order.c: In function 'find_nearest_neighbours':
../../../src/tools/gmx_order.c:86:12: warning: unused variable 'nnb' [-Wunused-variable]
   int    **nnb;
            ^~~
../../../src/tools/gmx_order.c:85:14: warning: unused variable 'mm' [-Wunused-variable]
   int     m1,mm;
              ^~
../../../src/tools/gmx_order.c:85:11: warning: unused variable 'm1' [-Wunused-variable]
   int     m1,mm;
           ^~
../../../src/tools/gmx_order.c:84:12: warning: unused variable 'd' [-Wunused-variable]
   t_dist  *d;
            ^
../../../src/tools/gmx_order.c:83:12: warning: unused variable 'dmat' [-Wunused-variable]
   t_mat   *dmat;
            ^~~~
../../../src/tools/gmx_order.c:80:18: warning: unused variable 'dx2' [-Wunused-variable]
   rvec    dx,dx1,dx2,rj,rk,urk,urj;
                  ^~~
../../../src/tools/gmx_order.c:80:14: warning: unused variable 'dx1' [-Wunused-variable]
   rvec    dx,dx1,dx2,rj,rk,urk,urj;
              ^~~
../../../src/tools/gmx_order.c:79:14: warning: unused variable 'i2' [-Wunused-variable]
   int     i1,i2,i,ibin,j,k,l,n,*nn[4];
              ^~
../../../src/tools/gmx_order.c:79:11: warning: unused variable 'i1' [-Wunused-variable]
   int     i1,i2,i,ibin,j,k,l,n,*nn[4];
           ^~
../../../src/tools/gmx_order.c:77:11: warning: unused variable 'fnsgdist' [-Wunused-variable]
   char    fnsgdist[32];
           ^~~~~~~~
../../../src/tools/gmx_order.c:76:12: warning: unused variable 'fpoutdist' [-Wunused-variable]
   FILE    *fpoutdist;
            ^~~~~~~~~
../../../src/tools/gmx_order.c: In function 'calc_tetra_order_parm':
../../../src/tools/gmx_order.c:228:14: warning: unused variable 'i' [-Wunused-variable]
   int        i,*isize,ng,nframes;
              ^
../../../src/tools/gmx_order.c:219:39: warning: unused variable 'subtitle' [-Wunused-variable]
   char       title[STRLEN],fn[STRLEN],subtitle[STRLEN];
                                       ^~~~~~~~
../../../src/tools/gmx_order.c:219:28: warning: unused variable 'fn' [-Wunused-variable]
   char       title[STRLEN],fn[STRLEN],subtitle[STRLEN];
                            ^~
../../../src/tools/gmx_order.c: In function 'calc_order':
../../../src/tools/gmx_order.c:315:9: warning: unused variable 'dbangle' [-Wunused-variable]
    real dbangle = 0, /* angle between double bond and  axis            */
         ^~~~~~~
../../../src/tools/gmx_order.c:311:13: warning: unused variable 'l' [-Wunused-variable]
     i,j,m,k,l,teller = 0,
             ^
../../../src/tools/gmx_order.c: In function 'gmx_order':
../../../src/tools/gmx_order.c:556:13: warning: unused variable 'i' [-Wunused-variable]
             i,
             ^
In file included from ../../../src/tools/gmx_order.c:52:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_order.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_order.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/gmx_order.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_polystat.lo ../../../src/tools/gmx_polystat.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_polystat.c  -fPIC -DPIC -o .libs/gmx_polystat.o
In file included from ../../../src/tools/gmx_polystat.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_polystat.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_polystat.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_polystat.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_energy.lo ../../../src/tools/gmx_energy.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_energy.c  -fPIC -DPIC -o .libs/gmx_energy.o
../../../src/tools/gmx_energy.c: In function 'select_by_name':
../../../src/tools/gmx_energy.c:139:8: warning: unused variable 'n' [-Wunused-variable]
   int  n,k,kk,j,i,nmatch,nind,nss;
        ^
../../../src/tools/gmx_energy.c: In function 'analyse_ener':
../../../src/tools/gmx_energy.c:529:16: warning: unused variable 'kkk' [-Wunused-variable]
   int  i,j,m,k,kkk;
                ^~~
../../../src/tools/gmx_energy.c:524:30: warning: unused variable 'diffav' [-Wunused-variable]
   real sfrac,oldfrac,diffsum,diffav,fstep,pr_aver,pr_stddev,fluct2;
                              ^~~~~~
../../../src/tools/gmx_energy.c:524:22: warning: unused variable 'diffsum' [-Wunused-variable]
   real sfrac,oldfrac,diffsum,diffav,fstep,pr_aver,pr_stddev,fluct2;
                      ^~~~~~~
../../../src/tools/gmx_energy.c:524:14: warning: unused variable 'oldfrac' [-Wunused-variable]
   real sfrac,oldfrac,diffsum,diffav,fstep,pr_aver,pr_stddev,fluct2;
              ^~~~~~~
../../../src/tools/gmx_energy.c:524:8: warning: unused variable 'sfrac' [-Wunused-variable]
   real sfrac,oldfrac,diffsum,diffav,fstep,pr_aver,pr_stddev,fluct2;
        ^~~~~
../../../src/tools/gmx_energy.c: In function 'fec':
../../../src/tools/gmx_energy.c:770:8: warning: unused variable 't' [-Wunused-variable]
   real t, aver, beta;
        ^
../../../src/tools/gmx_energy.c:766:22: warning: unused variable 'step' [-Wunused-variable]
   int  nre,timecheck,step,nenergy2,maxenergy;
                      ^~~~
../../../src/tools/gmx_energy.c:766:8: warning: unused variable 'nre' [-Wunused-variable]
   int  nre,timecheck,step,nenergy2,maxenergy;
        ^~~
../../../src/tools/gmx_energy.c: In function 'gmx_energy':
../../../src/tools/gmx_energy.c:979:16: warning: unused variable 'nms' [-Wunused-variable]
   char       **nms;
                ^~~
../../../src/tools/gmx_energy.c:977:27: warning: unused variable 'enm2' [-Wunused-variable]
   char       **enm=NULL,**enm2=NULL,**leg=NULL,**pairleg,**odtleg,**otenleg;
                           ^~~~
../../../src/tools/gmx_energy.c:973:42: warning: unused variable 'bEDR' [-Wunused-variable]
   bool       bFoundFirst,bFoundOld,bCont,bEDR,bVisco;
                                          ^~~~
../../../src/tools/gmx_energy.c:959:23: warning: unused variable 'ee' [-Wunused-variable]
   t_energy   *oldee,**ee;
                       ^~
../../../src/tools/gmx_energy.c:953:16: warning: unused variable 'drout' [-Wunused-variable]
   FILE       **drout;
                ^~~~~
At top level:
../../../src/tools/gmx_energy.c:118:12: warning: 'strcount' defined but not used [-Wunused-function]
 static int strcount(char *s1,char *s2)
            ^~~~~~~~
In file included from ../../../src/tools/gmx_energy.c:52:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_energy.c:50:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_energy.c:46:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_energy.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_rotacf.lo ../../../src/tools/gmx_rotacf.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_rotacf.c  -fPIC -DPIC -o .libs/gmx_rotacf.o
In file included from ../../../src/tools/gmx_rotacf.c:54:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_rotacf.c:54:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_rotacf.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_rotacf.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_potential.lo ../../../src/tools/gmx_potential.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_potential.c  -fPIC -DPIC -o .libs/gmx_potential.o
../../../src/tools/gmx_potential.c: In function 'calc_potential':
../../../src/tools/gmx_potential.c:108:9: warning: unused variable 'j' [-Wunused-variable]
       i,j,n,             /* loop indices */
         ^
../../../src/tools/gmx_potential.c:107:9: warning: unused variable 'slCount' [-Wunused-variable]
       **slCount,         /* nr. of atoms in one slice for a group */
         ^~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_potential.c:55:
At top level:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_potential.c:53:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_potential.c:50:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_potential.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_rama.lo ../../../src/tools/gmx_rama.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_rama.c  -fPIC -DPIC -o .libs/gmx_rama.o
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_rama.c:52:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_rama.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_rama.c:46:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_rama.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_saltbr.lo ../../../src/tools/gmx_saltbr.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_saltbr.c  -fPIC -DPIC -o .libs/gmx_saltbr.o
../../../src/tools/gmx_saltbr.c: In function 'gmx_saltbr':
../../../src/tools/gmx_saltbr.c:163:14: warning: unused variable 'label' [-Wunused-variable]
   char       label[234];
              ^~~~~
../../../src/tools/gmx_saltbr.c:162:17: warning: unused variable 'dt' [-Wunused-variable]
   double     t0,dt;
                 ^~
../../../src/tools/gmx_saltbr.c:162:14: warning: unused variable 't0' [-Wunused-variable]
   double     t0,dt;
              ^~
../../../src/tools/gmx_saltbr.c:156:50: warning: unused variable 'n3' [-Wunused-variable]
   int        status,i,j,k,m,nnn,teller,ncg,n1,n2,n3,natoms;
                                                  ^~
../../../src/tools/gmx_saltbr.c:156:47: warning: unused variable 'n2' [-Wunused-variable]
   int        status,i,j,k,m,nnn,teller,ncg,n1,n2,n3,natoms;
                                               ^~
../../../src/tools/gmx_saltbr.c:156:44: warning: unused variable 'n1' [-Wunused-variable]
   int        status,i,j,k,m,nnn,teller,ncg,n1,n2,n3,natoms;
                                            ^~
In file included from ../../../src/tools/gmx_saltbr.c:48:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_saltbr.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_saltbr.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_saltbr.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_rmsdist.lo ../../../src/tools/gmx_rmsdist.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_rmsdist.c  -fPIC -DPIC -o .libs/gmx_rmsdist.o
../../../src/tools/gmx_rmsdist.c: In function 'analyze_noe_equivalent':
../../../src/tools/gmx_rmsdist.c:249:11: warning: unused variable 'fp' [-Wunused-variable]
   FILE   *fp;
           ^~
../../../src/tools/gmx_rmsdist.c: In function 'gmx_rmsdist':
../../../src/tools/gmx_rmsdist.c:534:36: warning: unused variable 'gj' [-Wunused-variable]
   int          natom,i,j,teller,gi,gj;
                                    ^~
../../../src/tools/gmx_rmsdist.c:534:33: warning: unused variable 'gi' [-Wunused-variable]
   int          natom,i,j,teller,gi,gj;
                                 ^~
../../../src/tools/gmx_rmsdist.c:534:24: warning: unused variable 'j' [-Wunused-variable]
   int          natom,i,j,teller,gi,gj;
                        ^
In file included from ../../../src/tools/gmx_rmsdist.c:52:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_rmsdist.c:52:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_rmsdist.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_rmsdist.c:47:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_rms.lo ../../../src/tools/gmx_rms.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_rms.c  -fPIC -DPIC -o .libs/gmx_rms.o
In file included from ../../../src/tools/gmx_rms.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_rms.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_rms.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_rms.c:46:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_sdf.lo ../../../src/tools/gmx_sdf.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_sdf.c  -fPIC -DPIC -o .libs/gmx_sdf.o
../../../src/tools/gmx_sdf.c: In function 'do_sdf':
../../../src/tools/gmx_sdf.c:101:25: warning: unused variable 'bRefDone' [-Wunused-variable]
   bool       bTop=FALSE,bRefDone=FALSE,bInGroup=FALSE;
                         ^~~~~~~~
../../../src/tools/gmx_sdf.c:97:17: warning: unused variable 'jx' [-Wunused-variable]
   atom_id    ix,jx;
                 ^~
../../../src/tools/gmx_sdf.c:97:14: warning: unused variable 'ix' [-Wunused-variable]
   atom_id    ix,jx;
              ^~
../../../src/tools/gmx_sdf.c:92:17: warning: unused variable 'xcog' [-Wunused-variable]
   rvec       *x,xcog,dx,*x_i1,xi,*x_refmol;
                 ^~~~
../../../src/tools/gmx_sdf.c:89:23: warning: variable 'hbox' set but not used [-Wunused-but-set-variable]
   real       t,boxmin,hbox,normfac;
                       ^~~~
../../../src/tools/gmx_sdf.c:88:15: warning: unused variable 'index_ref' [-Wunused-variable]
   atom_id    *index_ref=NULL;
               ^~~~~~~~~
../../../src/tools/gmx_sdf.c:87:15: warning: unused variable 'index_cg' [-Wunused-variable]
   atom_id    *index_cg=NULL;
               ^~~~~~~~
../../../src/tools/gmx_sdf.c:85:24: warning: unused variable 'refc' [-Wunused-variable]
   int        nrefmol=0,refc=0;
                        ^~~~
../../../src/tools/gmx_sdf.c:83:14: warning: unused variable 'isize_ref' [-Wunused-variable]
   int        isize_ref=3;
              ^~~~~~~~~
../../../src/tools/gmx_sdf.c:82:14: warning: unused variable 'isize_cg' [-Wunused-variable]
   int        isize_cg=0;
              ^~~~~~~~
../../../src/tools/gmx_sdf.c:75:41: warning: unused variable 'dest' [-Wunused-variable]
   int        ng,natoms,i,j,k,l,X,Y,Z,lc,dest;
                                         ^~~~
../../../src/tools/gmx_sdf.c:75:38: warning: unused variable 'lc' [-Wunused-variable]
   int        ng,natoms,i,j,k,l,X,Y,Z,lc,dest;
                                      ^~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_sdf.c:33:
At top level:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_sdf.c:31:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_sdf.c:28:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_sdf.c:28:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
../../../src/tools/gmx_sdf.c:20:14: warning: 'SRCID_template_c' defined but not used [-Wunused-variable]
 static char *SRCID_template_c = "$Id$";
              ^~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_sgangle.lo ../../../src/tools/gmx_sgangle.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_sgangle.c  -fPIC -DPIC -o .libs/gmx_sgangle.o
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_sgangle.c:52:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_sgangle.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_sgangle.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_sgangle.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_sorient.lo ../../../src/tools/gmx_sorient.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_sorient.c  -fPIC -DPIC -o .libs/gmx_sorient.o
../../../src/tools/gmx_sorient.c: In function 'gmx_sorient':
../../../src/tools/gmx_sorient.c:114:72: warning: unused variable 'mtot' [-Wunused-variable]
   real    inp,outp,two_pi,nav,normfac,rmin2,rmax2,rcut,rcut2,r2,r,mass,mtot;
                                                                        ^~~~
../../../src/tools/gmx_sorient.c:114:67: warning: unused variable 'mass' [-Wunused-variable]
   real    inp,outp,two_pi,nav,normfac,rmin2,rmax2,rcut,rcut2,r2,r,mass,mtot;
                                                                   ^~~~
../../../src/tools/gmx_sorient.c:114:20: warning: variable 'two_pi' set but not used [-Wunused-but-set-variable]
   real    inp,outp,two_pi,nav,normfac,rmin2,rmax2,rcut,rcut2,r2,r,mass,mtot;
                    ^~~~~~
../../../src/tools/gmx_sorient.c:108:13: warning: unused variable 'j' [-Wunused-variable]
   int     i,j,p,sa0,sa1,sa2,n,ntot,nf,m,*hist1,*hist2,*histn,nbin1,nbin2,nrbin;
             ^
In file included from ../../../src/tools/gmx_sorient.c:45:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_sorient.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_sorient.c:43:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_sorient.c:41:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_spol.lo ../../../src/tools/gmx_spol.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_spol.c  -fPIC -DPIC -o .libs/gmx_spol.o
../../../src/tools/gmx_spol.c: In function 'gmx_spol':
../../../src/tools/gmx_spol.c:165:28: warning: unused variable 'bPBC' [-Wunused-variable]
   static bool bCom = FALSE,bPBC = FALSE;
                            ^~~~
../../../src/tools/gmx_spol.c:131:13: warning: unused variable 'xtop' [-Wunused-variable]
   rvec     *xtop,*x,xref,try,dx,dip,dir;
             ^~~~
../../../src/tools/gmx_spol.c:127:12: warning: unused variable 'title' [-Wunused-variable]
   char     title[STRLEN];
            ^~~~~
At top level:
../../../src/tools/gmx_spol.c:165:28: warning: 'bPBC' defined but not used [-Wunused-variable]
   static bool bCom = FALSE,bPBC = FALSE;
                            ^~~~
In file included from ../../../src/tools/gmx_spol.c:45:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_spol.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_spol.c:43:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_spol.c:41:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_sas.lo ../../../src/tools/gmx_sas.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_sas.c  -fPIC -DPIC -o .libs/gmx_sas.o
../../../src/tools/gmx_sas.c: In function 'sas_plot':
../../../src/tools/gmx_sas.c:369:12: warning: unused variable 'mm' [-Wunused-variable]
       real mm;
            ^~
In file included from ../../../src/tools/gmx_sas.c:55:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_sas.c:52:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_sas.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_sas.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_sas.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
../../../src/tools/gmx_sas.c: In function 'connelly_plot':
../../../src/tools/gmx_sas.c:152:45: warning: '%d' directive writing between 1 and 11 bytes into a region of size 6 [-Wformat-overflow=]
       sprintf(atoms->pdbinfo[ii0].pdbresnr,"%d",r0+1);
                                             ^~
../../../src/tools/gmx_sas.c:152:44: note: directive argument in the range [-2147483647, 2147483647]
       sprintf(atoms->pdbinfo[ii0].pdbresnr,"%d",r0+1);
                                            ^~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/tools/gmx_sas.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 2 and 12 bytes into a destination of size 6
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_rmsf.lo ../../../src/tools/gmx_rmsf.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_rmsf.c  -fPIC -DPIC -o .libs/gmx_rmsf.o
../../../src/tools/gmx_rmsf.c: In function 'gmx_rmsf':
../../../src/tools/gmx_rmsf.c:211:16: warning: unused variable 'buf' [-Wunused-variable]
   char         buf[256],*label;
                ^~~
../../../src/tools/gmx_rmsf.c:210:33: warning: unused variable 'res0' [-Wunused-variable]
   int          status,npdbatoms,res0;
                                 ^~~~
../../../src/tools/gmx_rmsf.c:206:16: warning: unused variable 'bCont' [-Wunused-variable]
   bool         bCont;
                ^~~~~
../../../src/tools/gmx_rmsf.c:202:16: warning: unused variable 'ir' [-Wunused-variable]
   t_inputrec   ir;
                ^~
../../../src/tools/gmx_rmsf.c:201:16: warning: unused variable 'header' [-Wunused-variable]
   t_tpxheader  header;
                ^~~~~~
../../../src/tools/gmx_rmsf.c:199:33: warning: unused variable 'w_rms' [-Wunused-variable]
   real         t,lambda,*w_rls,*w_rms;
                                 ^~~~~
../../../src/tools/gmx_rmsf.c:199:18: warning: unused variable 'lambda' [-Wunused-variable]
   real         t,lambda,*w_rls,*w_rms;
                  ^~~~~~
../../../src/tools/gmx_rmsf.c:198:40: warning: unused variable 'g' [-Wunused-variable]
   int          step,nre,natom,natoms,i,g,m,teller=0;
                                        ^
../../../src/tools/gmx_rmsf.c:198:31: warning: unused variable 'natoms' [-Wunused-variable]
   int          step,nre,natom,natoms,i,g,m,teller=0;
                               ^~~~~~
../../../src/tools/gmx_rmsf.c:198:21: warning: unused variable 'nre' [-Wunused-variable]
   int          step,nre,natom,natoms,i,g,m,teller=0;
                     ^~~
../../../src/tools/gmx_rmsf.c:198:16: warning: unused variable 'step' [-Wunused-variable]
   int          step,nre,natom,natoms,i,g,m,teller=0;
                ^~~~
../../../src/tools/gmx_rmsf.c:189:39: warning: unused variable 'bdevX' [-Wunused-variable]
   static bool bRes=FALSE,bAniso=FALSE,bdevX=FALSE,bFit=TRUE;
                                       ^~~~~
At top level:
../../../src/tools/gmx_rmsf.c:189:39: warning: 'bdevX' defined but not used [-Wunused-variable]
In file included from ../../../src/tools/gmx_rmsf.c:50:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/tools/gmx_rmsf.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_rmsf.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_rmsf.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_rmsf.c:45:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_mdmat.lo ../../../src/tools/gmx_mdmat.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_mdmat.c  -fPIC -DPIC -o .libs/gmx_mdmat.o
../../../src/tools/gmx_mdmat.c: In function 'gmx_mdmat':
../../../src/tools/gmx_mdmat.c:193:14: warning: unused variable 'nr0' [-Wunused-variable]
   int        nr0;
              ^~~
../../../src/tools/gmx_mdmat.c:192:45: warning: unused variable 'it' [-Wunused-variable]
   int        i,j,status,nres,natoms,nframes,it,trxnat;
                                             ^~
../../../src/tools/gmx_mdmat.c:165:15: warning: unused variable 'bAtom' [-Wunused-variable]
   static bool bAtom=FALSE;
               ^~~~~
At top level:
../../../src/tools/gmx_mdmat.c:165:15: warning: 'bAtom' defined but not used [-Wunused-variable]
In file included from ../../../src/tools/gmx_mdmat.c:49:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_mdmat.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_mdmat.c:44:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_mdmat.c:44:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_velacc.lo ../../../src/tools/gmx_velacc.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_velacc.c  -fPIC -DPIC -o .libs/gmx_velacc.o
In file included from ../../../src/tools/gmx_velacc.c:57:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/tools/gmx_velacc.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/gmx_velacc.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_velacc.c:43:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_traj.lo ../../../src/tools/gmx_traj.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_traj.c  -fPIC -DPIC -o .libs/gmx_traj.o
../../../src/tools/gmx_traj.c: In function 'write_pdb_bfac':
../../../src/tools/gmx_traj.c:337:11: warning: unused variable 'bOne' [-Wunused-variable]
   bool    bOne;
           ^~~~
../../../src/tools/gmx_traj.c: In function 'gmx_traj':
../../../src/tools/gmx_traj.c:525:18: warning: unused variable 'n' [-Wunused-variable]
   int        i,j,n;
                  ^
In file included from ../../../src/tools/gmx_traj.c:49:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_traj.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_traj.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_traj.c:42:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_tcaf.lo ../../../src/tools/gmx_tcaf.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_tcaf.c  -fPIC -DPIC -o .libs/gmx_tcaf.o
../../../src/tools/gmx_tcaf.c: In function 'gmx_tcaf':
../../../src/tools/gmx_tcaf.c:274:16: warning: unused variable 'c1' [-Wunused-variable]
   real       **c1,**tc;
                ^~
../../../src/tools/gmx_tcaf.c:265:14: warning: unused variable 'bTPS' [-Wunused-variable]
   bool       bTPS,bTop; /* ,bCubic; */
              ^~~~
In file included from ../../../src/tools/gmx_tcaf.c:57:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/tools/gmx_tcaf.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/gmx_tcaf.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_tcaf.c:43:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o correl.lo ../../../src/tools/correl.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/correl.c  -fPIC -DPIC -o .libs/correl.o
../../../src/tools/correl.c: In function 'complex_mult':
../../../src/tools/correl.c:189:10: warning: unused variable 'no2' [-Wunused-variable]
   int  i,no2,n_2,k;
          ^~~
In file included from ../../../include/gmx_fft.h:41,
                 from ../../../src/tools/correl.c:43:
At top level:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_rdf.lo ../../../src/tools/gmx_rdf.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_rdf.c  -fPIC -DPIC -o .libs/gmx_rdf.o
../../../src/tools/gmx_rdf.c: In function 'do_rdf':
../../../src/tools/gmx_rdf.c:168:23: warning: unused variable 'index_cm' [-Wunused-variable]
   atom_id    **index,*index_cm=NULL;
                       ^~~~~~~~
../../../src/tools/gmx_rdf.c:167:21: warning: unused variable 'isize_cm' [-Wunused-variable]
   int        *isize,isize_cm=0,nrdf=0,max_i,isize0,isize_g;
                     ^~~~~~~~
../../../src/tools/gmx_rdf.c:164:40: warning: unused variable 'n' [-Wunused-variable]
   int        g,natoms,i,j,k,nbin,j0,j1,n,nframes;
                                        ^
../../../src/tools/gmx_rdf.c:164:37: warning: unused variable 'j1' [-Wunused-variable]
   int        g,natoms,i,j,k,nbin,j0,j1,n,nframes;
                                     ^~
../../../src/tools/gmx_rdf.c:164:34: warning: unused variable 'j0' [-Wunused-variable]
   int        g,natoms,i,j,k,nbin,j0,j1,n,nframes;
                                  ^~
../../../src/tools/gmx_rdf.c:162:28: warning: unused variable 'outf2' [-Wunused-variable]
   char       outf1[STRLEN],outf2[STRLEN];
                            ^~~~~
../../../src/tools/gmx_rdf.c:162:14: warning: unused variable 'outf1' [-Wunused-variable]
   char       outf1[STRLEN],outf2[STRLEN];
              ^~~~~
In file included from ../../../include/fftgrid.h:46,
                 from ../../../src/tools/gmx_rdf.c:57:
At top level:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_rdf.c:52:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_rdf.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_rdf.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_rdf.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_trjcat.lo ../../../src/tools/gmx_trjcat.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_trjcat.c  -fPIC -DPIC -o .libs/gmx_trjcat.o
../../../src/tools/gmx_trjcat.c: In function 'scan_trj_files':
../../../src/tools/gmx_trjcat.c:78:8: warning: unused variable 't' [-Wunused-variable]
   real t;
        ^
../../../src/tools/gmx_trjcat.c: In function 'gmx_trjcat':
../../../src/tools/gmx_trjcat.c:392:58: warning: unused variable 'last_ok_step' [-Wunused-variable]
   int         earliersteps,nfile_in,nfile_out,*cont_type,last_ok_step;
                                                          ^~~~~~~~~~~~
../../../src/tools/gmx_trjcat.c:388:34: warning: unused variable 'in_file' [-Wunused-variable]
   char        **fnms,**fnms_out,*in_file,*out_file;
                                  ^~~~~~~
../../../src/tools/gmx_trjcat.c:385:19: warning: unused variable 'v' [-Wunused-variable]
   rvec        *x,*v;
                   ^
../../../src/tools/gmx_trjcat.c:385:16: warning: unused variable 'x' [-Wunused-variable]
   rvec        *x,*v;
                ^
../../../src/tools/gmx_trjcat.c:384:53: warning: unused variable 'trjout' [-Wunused-variable]
   int         status,ftpin,i,frame,frame_out,step=0,trjout=0;
                                                     ^~~~~~
../../../src/tools/gmx_trjcat.c:384:22: warning: unused variable 'ftpin' [-Wunused-variable]
   int         status,ftpin,i,frame,frame_out,step=0,trjout=0;
                      ^~~~~
In file included from ../../../src/tools/gmx_trjcat.c:56:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_trjcat.c:56:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_trjcat.c:52:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_trjcat.c:50:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_trjcat.c:46:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_wham.lo ../../../src/tools/gmx_wham.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_wham.c  -fPIC -DPIC -o .libs/gmx_wham.o
In file included from ../../../src/tools/gmx_wham.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_wham.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_wham.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_wham.c:44:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
../../../src/tools/gmx_wham.c: In function 'open_pdo_pipe':
../../../src/tools/gmx_wham.c:1201:27: warning: ' -c < ' directive writing 6 bytes into a region of size between 1 and 1024 [-Wformat-overflow=]
         sprintf(Buffer,"%s -c < %s",gunzip,fn);
                           ^~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../src/tools/gmx_wham.c:37:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 7 or more bytes (assuming 1030) into a destination of size 1024
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_trjorder.lo ../../../src/tools/gmx_trjorder.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_trjorder.c  -fPIC -DPIC -o .libs/gmx_trjorder.o
In file included from ../../../src/tools/gmx_trjorder.c:49:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_trjorder.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_trjorder.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_trjorder.c:42:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_clustsize.lo ../../../src/tools/gmx_clustsize.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_clustsize.c  -fPIC -DPIC -o .libs/gmx_clustsize.o
../../../src/tools/gmx_clustsize.c: In function 'clust_size':
../../../src/tools/gmx_clustsize.c:94:50: warning: unused variable 'n_y' [-Wunused-variable]
   int     i,j,k,ai,aj,ak,ci,cj,nframe,nclust,n_x,n_y,max_size=0;
                                                  ^~~
../../../src/tools/gmx_clustsize.c:94:23: warning: unused variable 'ak' [-Wunused-variable]
   int     i,j,k,ai,aj,ak,ci,cj,nframe,nclust,n_x,n_y,max_size=0;
                       ^~
../../../src/tools/gmx_clustsize.c:89:40: warning: unused variable 'nsame' [-Wunused-variable]
   int     version,generation,sss,ii,jj,nsame;
                                        ^~~~~
../../../src/tools/gmx_clustsize.c: In function 'gmx_clustsize':
../../../src/tools/gmx_clustsize.c:396:18: warning: unused variable 'bRDF' [-Wunused-variable]
   bool       bSQ,bRDF;
                  ^~~~
../../../src/tools/gmx_clustsize.c:396:14: warning: unused variable 'bSQ' [-Wunused-variable]
   bool       bSQ,bRDF;
              ^~~
In file included from ../../../include/pme.h:46,
                 from ../../../src/tools/gmx_clustsize.c:62:
At top level:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/tools/gmx_clustsize.c:52:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_clustsize.c:50:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_clustsize.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_clustsize.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_nmtraj.lo ../../../src/tools/gmx_nmtraj.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_nmtraj.c  -fPIC -DPIC -o .libs/gmx_nmtraj.o
../../../src/tools/gmx_nmtraj.c: In function 'gmx_nmtraj':
../../../src/tools/gmx_nmtraj.c:129:14: warning: variable 'dum' set but not used [-Wunused-but-set-variable]
   real       dum;
              ^~~
../../../src/tools/gmx_nmtraj.c:124:14: warning: unused variable 'found' [-Wunused-variable]
   bool       found;
              ^~~~~
../../../src/tools/gmx_nmtraj.c:123:25: warning: unused variable 'sum' [-Wunused-variable]
   real       omega,Ekin,sum,m,vel;
                         ^~~
../../../src/tools/gmx_nmtraj.c:121:15: warning: unused variable 'out_eigval' [-Wunused-variable]
   real       *out_eigval;
               ^~~~~~~~~~
../../../src/tools/gmx_nmtraj.c:115:14: warning: unused variable 'neigval' [-Wunused-variable]
   int        neigval;
              ^~~~~~~
../../../src/tools/gmx_nmtraj.c:113:14: warning: unused variable 'grpname' [-Wunused-variable]
   char *     grpname;
              ^~~~~~~
../../../src/tools/gmx_nmtraj.c:111:14: warning: unused variable 'indexfile' [-Wunused-variable]
   char *     indexfile;
              ^~~~~~~~~
../../../src/tools/gmx_nmtraj.c:109:30: warning: unused variable 'v' [-Wunused-variable]
   int        i,j,k,kmode,d,s,v;
                              ^
../../../src/tools/gmx_nmtraj.c:109:28: warning: unused variable 's' [-Wunused-variable]
   int        i,j,k,kmode,d,s,v;
                            ^
../../../src/tools/gmx_nmtraj.c:105:15: warning: unused variable 'eigvalnr' [-Wunused-variable]
   int        *eigvalnr;
               ^~~~~~~~
In file included from ../../../src/tools/gmx_nmtraj.c:54:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/tools/gmx_nmtraj.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_nmtraj.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_nmtraj.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_nmtraj.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_helixorient.lo ../../../src/tools/gmx_helixorient.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_helixorient.c  -fPIC -DPIC -o .libs/gmx_helixorient.o
../../../src/tools/gmx_helixorient.c: In function 'gmx_helixorient':
../../../src/tools/gmx_helixorient.c:125:14: warning: unused variable 'rotangle' [-Wunused-variable]
     real tmp,rotangle;
              ^~~~~~~~
../../../src/tools/gmx_helixorient.c:107:10: warning: unused variable 'axes' [-Wunused-variable]
     rvec axes[3];
          ^~~~
../../../src/tools/gmx_helixorient.c:106:10: warning: unused variable 'axes_t0' [-Wunused-variable]
     rvec axes_t0[3];
          ^~~~~~~
../../../src/tools/gmx_helixorient.c:93:27: warning: unused variable 'vproj' [-Wunused-variable]
     rvec v1,v2,p1,p2,vtmp,vproj;
                           ^~~~~
../../../src/tools/gmx_helixorient.c:93:22: warning: unused variable 'vtmp' [-Wunused-variable]
     rvec v1,v2,p1,p2,vtmp,vproj;
                      ^~~~
../../../src/tools/gmx_helixorient.c:93:19: warning: unused variable 'p2' [-Wunused-variable]
     rvec v1,v2,p1,p2,vtmp,vproj;
                   ^~
../../../src/tools/gmx_helixorient.c:93:16: warning: unused variable 'p1' [-Wunused-variable]
     rvec v1,v2,p1,p2,vtmp,vproj;
                ^~
../../../src/tools/gmx_helixorient.c:92:10: warning: unused variable 'averageaxis' [-Wunused-variable]
     rvec averageaxis;
          ^~~~~~~~~~~
../../../src/tools/gmx_helixorient.c:86:9: warning: unused variable 'd' [-Wunused-variable]
     int d,i,j,teller=0;
         ^
../../../src/tools/gmx_helixorient.c:80:18: warning: unused variable 'dx' [-Wunused-variable]
     rvec *x=NULL,dx;
                  ^~
In file included from ../../../src/tools/gmx_helixorient.c:48:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_helixorient.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_helixorient.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_helixorient.c:45:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_hbond.lo ../../../src/tools/gmx_hbond.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_hbond.c  -fPIC -DPIC -o .libs/gmx_hbond.o
../../../src/tools/gmx_hbond.c: In function 'mk_hbmap':
../../../src/tools/gmx_hbond.c:182:10: warning: unused variable 'j' [-Wunused-variable]
   int  i,j;
          ^
../../../src/tools/gmx_hbond.c: In function 'add_frames':
../../../src/tools/gmx_hbond.c:194:14: warning: unused variable 'l' [-Wunused-variable]
   int  i,j,k,l;
              ^
../../../src/tools/gmx_hbond.c:194:12: warning: unused variable 'k' [-Wunused-variable]
   int  i,j,k,l;
            ^
../../../src/tools/gmx_hbond.c:194:10: warning: unused variable 'j' [-Wunused-variable]
   int  i,j,k,l;
          ^
../../../src/tools/gmx_hbond.c:194:8: warning: unused variable 'i' [-Wunused-variable]
   int  i,j,k,l;
        ^
../../../src/tools/gmx_hbond.c: In function 'search_donors':
../../../src/tools/gmx_hbond.c:543:14: warning: unused variable 'stop' [-Wunused-variable]
   bool       stop;
              ^~~~
../../../src/tools/gmx_hbond.c:539:22: warning: unused variable 'n' [-Wunused-variable]
   int        i,j,nra,n;
                      ^
../../../src/tools/gmx_hbond.c:539:18: warning: unused variable 'nra' [-Wunused-variable]
   int        i,j,nra,n;
                  ^~~
../../../src/tools/gmx_hbond.c: In function 'is_hbond':
../../../src/tools/gmx_hbond.c:900:19: warning: unused variable 'ihb' [-Wunused-variable]
   int  h,hh,id,ja,ihb;
                   ^~~
../../../src/tools/gmx_hbond.c: In function 'merge_hb':
../../../src/tools/gmx_hbond.c:1021:44: warning: unused variable 'ogrp' [-Wunused-variable]
   int  i,inrnew,indnew,j,ii,jj,m,id,ia,grp,ogrp,ntmp;
                                            ^~~~
../../../src/tools/gmx_hbond.c:1021:40: warning: unused variable 'grp' [-Wunused-variable]
   int  i,inrnew,indnew,j,ii,jj,m,id,ia,grp,ogrp,ntmp;
                                        ^~~
../../../src/tools/gmx_hbond.c:1021:32: warning: unused variable 'm' [-Wunused-variable]
   int  i,inrnew,indnew,j,ii,jj,m,id,ia,grp,ogrp,ntmp;
                                ^
../../../src/tools/gmx_hbond.c: In function 'do_nhb_dist':
../../../src/tools/gmx_hbond.c:1077:8: warning: unused variable 'nhb' [-Wunused-variable]
   h_id nhb;
        ^~~
../../../src/tools/gmx_hbond.c: In function 'smooth_tail':
../../../src/tools/gmx_hbond.c:1439:9: warning: unused variable 'fp' [-Wunused-variable]
   FILE *fp;
         ^~
../../../src/tools/gmx_hbond.c: In function 'analyse_corr':
../../../src/tools/gmx_hbond.c:1461:56: warning: unused variable 'dt' [-Wunused-variable]
   real   Q=0,chi22,chi2,dg,dgp,tau_hb,dtau,tau_rlx,e_1,dt,sigma_k,sigma_kp,ddg;
                                                        ^~
../../../src/tools/gmx_hbond.c:1461:28: warning: unused variable 'dgp' [-Wunused-variable]
   real   Q=0,chi22,chi2,dg,dgp,tau_hb,dtau,tau_rlx,e_1,dt,sigma_k,sigma_kp,ddg;
                            ^~~
../../../src/tools/gmx_hbond.c:1461:25: warning: unused variable 'dg' [-Wunused-variable]
   real   Q=0,chi22,chi2,dg,dgp,tau_hb,dtau,tau_rlx,e_1,dt,sigma_k,sigma_kp,ddg;
                         ^~
../../../src/tools/gmx_hbond.c:1461:14: warning: variable 'chi22' set but not used [-Wunused-but-set-variable]
   real   Q=0,chi22,chi2,dg,dgp,tau_hb,dtau,tau_rlx,e_1,dt,sigma_k,sigma_kp,ddg;
              ^~~~~
../../../src/tools/gmx_hbond.c: In function 'do_hbac':
../../../src/tools/gmx_hbond.c:1585:27: warning: variable 'ngh' set but not used [-Wunused-but-set-variable]
   int   nh,nhbonds,nhydro,ngh;
                           ^~~
../../../src/tools/gmx_hbond.c:1577:18: warning: unused variable 'nd' [-Wunused-variable]
   int  i,j,k,m,n,nd,ihb,idist,n2,nn;
                  ^~
../../../src/tools/gmx_hbond.c:1577:16: warning: unused variable 'n' [-Wunused-variable]
   int  i,j,k,m,n,nd,ihb,idist,n2,nn;
                ^
../../../src/tools/gmx_hbond.c: In function 'gmx_hbond':
../../../src/tools/gmx_hbond.c:2051:30: warning: unused variable 'bin' [-Wunused-variable]
   int        grp,nabin,nrbin,bin,resdist,ihb;
                              ^~~
../../../src/tools/gmx_hbond.c:2049:43: warning: unused variable 'was' [-Wunused-variable]
   bool    bSelected,bHBmap,bStop,bTwo,new,was,bBox,bTric;
                                           ^~~
../../../src/tools/gmx_hbond.c:2049:39: warning: unused variable 'new' [-Wunused-variable]
   bool    bSelected,bHBmap,bStop,bTwo,new,was,bBox,bTric;
                                       ^~~
../../../src/tools/gmx_hbond.c:2045:34: warning: unused variable 'ja' [-Wunused-variable]
   int     h,i,j,k,l,start,end,id,ja,ogrp,nsel;
                                  ^~
../../../src/tools/gmx_hbond.c:2045:31: warning: unused variable 'id' [-Wunused-variable]
   int     h,i,j,k,l,start,end,id,ja,ogrp,nsel;
                               ^~
../../../src/tools/gmx_hbond.c:2045:27: warning: unused variable 'end' [-Wunused-variable]
   int     h,i,j,k,l,start,end,id,ja,ogrp,nsel;
                           ^~~
../../../src/tools/gmx_hbond.c:2045:21: warning: unused variable 'start' [-Wunused-variable]
   int     h,i,j,k,l,start,end,id,ja,ogrp,nsel;
                     ^~~~~
../../../src/tools/gmx_hbond.c:2045:19: warning: unused variable 'l' [-Wunused-variable]
   int     h,i,j,k,l,start,end,id,ja,ogrp,nsel;
                   ^
At top level:
../../../src/tools/gmx_hbond.c:372:13: warning: 'in_list' defined but not used [-Wunused-function]
 static bool in_list(atom_id selection,int isize,atom_id *index)
             ^~~~~~~
In file included from ../../../include/gmx_fft.h:41,
                 from ../../../src/tools/correl.h:40,
                 from ../../../src/tools/gmx_hbond.c:59:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/tools/gmx_hbond.c:53:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_hbond.c:53:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_hbond.c:43:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_hbond.c:42:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_trjconv.lo ../../../src/tools/gmx_trjconv.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_trjconv.c  -fPIC -DPIC -o .libs/gmx_trjconv.o
../../../src/tools/gmx_trjconv.c: In function 'calc_pbc_cluster':
../../../src/tools/gmx_trjconv.c:89:34: warning: unused variable 'is' [-Wunused-variable]
   int     m,i,j,j0,j1,jj,ai,iter,is;
                                  ^~
../../../src/tools/gmx_trjconv.c: In function 'put_molecule_com_in_box':
../../../src/tools/gmx_trjconv.c:252:29: warning: unused variable 'dx' [-Wunused-variable]
   rvec    com,new_com,shift,dx,box_center;
                             ^~
../../../src/tools/gmx_trjconv.c: In function 'put_residue_com_in_box':
../../../src/tools/gmx_trjconv.c:303:37: warning: variable 'res_nat' set but not used [-Wunused-but-set-variable]
   atom_id i, j, res_start, res_end, res_nat;
                                     ^~~~~~~
../../../src/tools/gmx_trjconv.c: In function 'gmx_trjconv':
../../../src/tools/gmx_trjconv.c:726:16: warning: unused variable 'xdr' [-Wunused-variable]
   int          xdr=0;
                ^~~
../../../src/tools/gmx_trjconv.c:725:42: warning: unused variable 'command' [-Wunused-variable]
   char         top_title[256],title[256],command[256],filemode[5];
                                          ^~~~~~~
../../../src/tools/gmx_trjconv.c:715:21: warning: variable 'bFitXY' set but not used [-Wunused-but-set-variable]
   bool         bFit,bFitXY,bPFit,bReset;
                     ^~~~~~
../../../src/tools/gmx_trjconv.c:707:25: warning: unused variable 'gn_rms' [-Wunused-variable]
   char         *gn_fit,*gn_rms;
                         ^~~~~~
../../../src/tools/gmx_trjconv.c:706:26: warning: unused variable 'ind_rms' [-Wunused-variable]
   atom_id      *ind_fit,*ind_rms;
                          ^~~~~~~
../../../src/tools/gmx_trjconv.c:705:21: warning: unused variable 'irms' [-Wunused-variable]
   int          ifit,irms,my_clust=-1;
                     ^~~~
../../../src/tools/gmx_trjconv.c:695:55: warning: unused variable 'nre' [-Wunused-variable]
   int          m,i,d,frame,outframe,natoms,nout,ncent,nre,newstep=0,model_nr;
                                                       ^~~
../../../src/tools/gmx_trjconv.c:694:23: warning: unused variable 'lambda' [-Wunused-variable]
   real         xtcpr, lambda,*w_rls=NULL;
                       ^~~~~~
../../../src/tools/gmx_trjconv.c:694:16: warning: unused variable 'xtcpr' [-Wunused-variable]
   real         xtcpr, lambda,*w_rls=NULL;
                ^~~~~
../../../src/tools/gmx_trjconv.c:693:49: warning: unused variable 'dx' [-Wunused-variable]
   rvec         *xp=NULL,x_shift,hbox,box_center,dx;
                                                 ^~
../../../src/tools/gmx_trjconv.c:693:38: warning: unused variable 'box_center' [-Wunused-variable]
   rvec         *xp=NULL,x_shift,hbox,box_center,dx;
                                      ^~~~~~~~~~
In file included from ../../../src/tools/gmx_trjconv.c:57:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_trjconv.c:57:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_trjconv.c:53:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_trjconv.c:51:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_trjconv.c:47:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
../../../src/tools/gmx_trjconv.c: In function 'gmx_trjconv':
../../../src/tools/gmx_trjconv.c:1325:46: warning: '%s' directive writing up to 255 bytes into a region of size 233 [-Wformat-overflow=]
        sprintf(title,"Generated by trjconv : %s t= %9.5f",
                                              ^~
         top_title,fr.time);
         ~~~~~~~~~                             
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../include/typedefs.h:52,
                 from ../../../include/macros.h:49,
                 from ../../../src/tools/gmx_trjconv.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 37 and 599 bytes into a destination of size 256
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/tools/gmx_trjconv.c:1336:20: warning: ' t= ' directive writing 4 bytes into a region of size between 1 and 256 [-Wformat-overflow=]
   sprintf(title,"%s t= %9.5f",top_title,frout.time);
                    ^~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../include/typedefs.h:52,
                 from ../../../include/macros.h:49,
                 from ../../../src/tools/gmx_trjconv.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 14 and 576 bytes into a destination of size 256
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_genpr.lo ../../../src/tools/gmx_genpr.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_genpr.c  -fPIC -DPIC -o .libs/gmx_genpr.o
In file included from ../../../src/tools/gmx_genpr.c:50:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_genpr.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_genpr.c:44:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_genpr.c:42:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_genconf.lo ../../../src/tools/gmx_genconf.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_genconf.c  -fPIC -DPIC -o .libs/gmx_genconf.o
../../../src/tools/gmx_genconf.c:93:13: warning: 'move_x' defined but not used [-Wunused-function]
 static void move_x(int natoms,rvec x[],matrix box)
             ^~~~~~
In file included from ../../../src/tools/gmx_genconf.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_genconf.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_genconf.c:42:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_genconf.c:40:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_sham.lo ../../../src/tools/gmx_sham.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_sham.c  -fPIC -DPIC -o .libs/gmx_sham.o
../../../src/tools/gmx_sham.c: In function 'do_sham':
../../../src/tools/gmx_sham.c:286:32: warning: unused variable 'd' [-Wunused-variable]
   int     i,j,k,imin,len,index,d,*nbin,*bindex,bi;
                                ^
../../../src/tools/gmx_sham.c: In function 'gmx_sham':
../../../src/tools/gmx_sham.c:778:41: warning: unused variable 'db' [-Wunused-variable]
   double   *av,*sig,cum1,cum2,cum3,cum4,db;
                                         ^~
../../../src/tools/gmx_sham.c:778:36: warning: unused variable 'cum4' [-Wunused-variable]
   double   *av,*sig,cum1,cum2,cum3,cum4,db;
                                    ^~~~
../../../src/tools/gmx_sham.c:778:31: warning: unused variable 'cum3' [-Wunused-variable]
   double   *av,*sig,cum1,cum2,cum3,cum4,db;
                               ^~~~
../../../src/tools/gmx_sham.c:778:26: warning: unused variable 'cum2' [-Wunused-variable]
   double   *av,*sig,cum1,cum2,cum3,cum4,db;
                          ^~~~
../../../src/tools/gmx_sham.c:778:21: warning: unused variable 'cum1' [-Wunused-variable]
   double   *av,*sig,cum1,cum2,cum3,cum4,db;
                     ^~~~
../../../src/tools/gmx_sham.c:778:17: warning: unused variable 'sig' [-Wunused-variable]
   double   *av,*sig,cum1,cum2,cum3,cum4,db;
                 ^~~
../../../src/tools/gmx_sham.c:778:13: warning: unused variable 'av' [-Wunused-variable]
   double   *av,*sig,cum1,cum2,cum3,cum4,db;
             ^~
../../../src/tools/gmx_sham.c:776:66: warning: unused variable 'error' [-Wunused-variable]
   real     **val,**et_val,**dt_val,*t,*e_t,e_dt,d_dt,*d_t,dt,tot,error;
                                                                  ^~~~~
../../../src/tools/gmx_sham.c:776:62: warning: unused variable 'tot' [-Wunused-variable]
   real     **val,**et_val,**dt_val,*t,*e_t,e_dt,d_dt,*d_t,dt,tot,error;
                                                              ^~~
../../../src/tools/gmx_sham.c:775:51: warning: unused variable 'j' [-Wunused-variable]
   int      n,e_n,d_n,nlast,s,nset,e_nset,d_nset,i,j=0,*idim,*ibox;
                                                   ^
../../../src/tools/gmx_sham.c:775:28: warning: unused variable 's' [-Wunused-variable]
   int      n,e_n,d_n,nlast,s,nset,e_nset,d_nset,i,j=0,*idim,*ibox;
                            ^
../../../src/tools/gmx_sham.c:775:22: warning: unused variable 'nlast' [-Wunused-variable]
   int      n,e_n,d_n,nlast,s,nset,e_nset,d_nset,i,j=0,*idim,*ibox;
                      ^~~~~
../../../src/tools/gmx_sham.c:774:13: warning: unused variable 'out' [-Wunused-variable]
   FILE     *out;
             ^~~
../../../src/tools/gmx_sham.c:728:35: warning: unused variable 'resol' [-Wunused-variable]
   static int  nsets_in=1,nb_min=4,resol=10,nlevels=25;
                                   ^~~~~
../../../src/tools/gmx_sham.c:728:26: warning: unused variable 'nb_min' [-Wunused-variable]
   static int  nsets_in=1,nb_min=4,resol=10,nlevels=25;
                          ^~~~~~
../../../src/tools/gmx_sham.c:723:15: warning: unused variable 'bShamEner' [-Wunused-variable]
   static bool bShamEner=TRUE,bSham=TRUE;
               ^~~~~~~~~
../../../src/tools/gmx_sham.c:722:56: warning: unused variable 'bPower' [-Wunused-variable]
   static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE;
                                                        ^~~~~~
../../../src/tools/gmx_sham.c:722:41: warning: unused variable 'bEeFitAc' [-Wunused-variable]
   static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE;
                                         ^~~~~~~~
../../../src/tools/gmx_sham.c:722:28: warning: unused variable 'bEENLC' [-Wunused-variable]
   static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE;
                            ^~~~~~
../../../src/tools/gmx_sham.c:722:15: warning: unused variable 'bEESEF' [-Wunused-variable]
   static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE;
               ^~~~~~
../../../src/tools/gmx_sham.c:721:66: warning: unused variable 'bXYdy' [-Wunused-variable]
   static bool bHaveT=TRUE,bDer=FALSE,bSubAv=TRUE,bAverCorr=FALSE,bXYdy=FALSE;
                                                                  ^~~~~
../../../src/tools/gmx_sham.c:721:50: warning: unused variable 'bAverCorr' [-Wunused-variable]
   static bool bHaveT=TRUE,bDer=FALSE,bSubAv=TRUE,bAverCorr=FALSE,bXYdy=FALSE;
                                                  ^~~~~~~~~
../../../src/tools/gmx_sham.c:721:38: warning: unused variable 'bSubAv' [-Wunused-variable]
   static bool bHaveT=TRUE,bDer=FALSE,bSubAv=TRUE,bAverCorr=FALSE,bXYdy=FALSE;
                                      ^~~~~~
../../../src/tools/gmx_sham.c:720:36: warning: unused variable 'filtlen' [-Wunused-variable]
   static real tb=-1,te=-1,frac=0.5,filtlen=0,binwidth=0.1;
                                    ^~~~~~~
../../../src/tools/gmx_sham.c:720:27: warning: unused variable 'frac' [-Wunused-variable]
   static real tb=-1,te=-1,frac=0.5,filtlen=0,binwidth=0.1;
                           ^~~~
At top level:
../../../src/tools/gmx_sham.c:720:27: warning: 'frac' defined but not used [-Wunused-variable]
../../../src/tools/gmx_sham.c:720:36: warning: 'filtlen' defined but not used [-Wunused-variable]
   static real tb=-1,te=-1,frac=0.5,filtlen=0,binwidth=0.1;
                                    ^~~~~~~
../../../src/tools/gmx_sham.c:721:38: warning: 'bSubAv' defined but not used [-Wunused-variable]
   static bool bHaveT=TRUE,bDer=FALSE,bSubAv=TRUE,bAverCorr=FALSE,bXYdy=FALSE;
                                      ^~~~~~
../../../src/tools/gmx_sham.c:721:50: warning: 'bAverCorr' defined but not used [-Wunused-variable]
   static bool bHaveT=TRUE,bDer=FALSE,bSubAv=TRUE,bAverCorr=FALSE,bXYdy=FALSE;
                                                  ^~~~~~~~~
../../../src/tools/gmx_sham.c:721:66: warning: 'bXYdy' defined but not used [-Wunused-variable]
   static bool bHaveT=TRUE,bDer=FALSE,bSubAv=TRUE,bAverCorr=FALSE,bXYdy=FALSE;
                                                                  ^~~~~
../../../src/tools/gmx_sham.c:722:15: warning: 'bEESEF' defined but not used [-Wunused-variable]
   static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE;
               ^~~~~~
../../../src/tools/gmx_sham.c:722:28: warning: 'bEENLC' defined but not used [-Wunused-variable]
   static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE;
                            ^~~~~~
../../../src/tools/gmx_sham.c:722:41: warning: 'bEeFitAc' defined but not used [-Wunused-variable]
   static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE;
                                         ^~~~~~~~
../../../src/tools/gmx_sham.c:722:56: warning: 'bPower' defined but not used [-Wunused-variable]
   static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE;
                                                        ^~~~~~
../../../src/tools/gmx_sham.c:723:15: warning: 'bShamEner' defined but not used [-Wunused-variable]
   static bool bShamEner=TRUE,bSham=TRUE;
               ^~~~~~~~~
../../../src/tools/gmx_sham.c:728:26: warning: 'nb_min' defined but not used [-Wunused-variable]
   static int  nsets_in=1,nb_min=4,resol=10,nlevels=25;
                          ^~~~~~
../../../src/tools/gmx_sham.c:728:35: warning: 'resol' defined but not used [-Wunused-variable]
   static int  nsets_in=1,nb_min=4,resol=10,nlevels=25;
                                   ^~~~~
In file included from ../../../src/tools/gmx_sham.c:56:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/tools/gmx_sham.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_sham.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_sham.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_sham.c:41:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_wheel.lo ../../../src/tools/gmx_wheel.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_wheel.c  -fPIC -DPIC -o .libs/gmx_wheel.o
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_wheel.c:55:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_wheel.c:52:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_wheel.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_wheel.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_vanhove.lo ../../../src/tools/gmx_vanhove.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_vanhove.c  -fPIC -DPIC -o .libs/gmx_vanhove.o
In file included from ../../../src/tools/gmx_vanhove.c:56:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/tools/gmx_vanhove.c:51:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_vanhove.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_vanhove.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_genbox.lo ../../../src/tools/gmx_genbox.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_genbox.c  -fPIC -DPIC -o .libs/gmx_genbox.o
../../../src/tools/gmx_genbox.c: In function 'gmx_genbox':
../../../src/tools/gmx_genbox.c:665:11: warning: unused variable 'pbc' [-Wunused-variable]
   t_pbc   pbc;
           ^~~
In file included from ../../../src/tools/gmx_genbox.c:61:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_genbox.c:57:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_genbox.c:55:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_genbox.c:55:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_genbox.c:47:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
../../../src/tools/gmx_genbox.c: In function 'update_top.constprop':
../../../src/tools/gmx_genbox.c:538:19: warning: ' in water
   ' directive writing 10 bytes into a region of size between 1 and 4096 [-Wformat-overflow=]
    sprintf(buf,"%s in water\n",buf2);
                   ^~~~~~~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/tools/gmx_genbox.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 11 and 4106 bytes into a destination of size 4096
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o editconf.o ../../../src/tools/editconf.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o eneconv.o ../../../src/tools/eneconv.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o genbox.o ../../../src/tools/genbox.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o genconf.o ../../../src/tools/genconf.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o calcpot.lo ../../../src/tools/calcpot.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/calcpot.c  -fPIC -DPIC -o .libs/calcpot.o
../../../src/tools/calcpot.c: In function 'c_tabpot':
../../../src/tools/calcpot.c:79:8: warning: unused variable 'qqO' [-Wunused-variable]
   real qqO,qj;
        ^~~
../../../src/tools/calcpot.c:78:43: warning: unused variable 'rinv2O' [-Wunused-variable]
   real txO,tyO,tzO,vcO,fsO,qO,rsqO,rinv1O,rinv2O;
                                           ^~~~~~
../../../src/tools/calcpot.c:78:24: warning: unused variable 'fsO' [-Wunused-variable]
   real txO,tyO,tzO,vcO,fsO,qO,rsqO,rinv1O,rinv2O;
                        ^~~
../../../src/tools/calcpot.c:78:20: warning: unused variable 'vcO' [-Wunused-variable]
   real txO,tyO,tzO,vcO,fsO,qO,rsqO,rinv1O,rinv2O;
                    ^~~
../../../src/tools/calcpot.c:78:16: warning: unused variable 'tzO' [-Wunused-variable]
   real txO,tyO,tzO,vcO,fsO,qO,rsqO,rinv1O,rinv2O;
                ^~~
../../../src/tools/calcpot.c:78:12: warning: unused variable 'tyO' [-Wunused-variable]
   real txO,tyO,tzO,vcO,fsO,qO,rsqO,rinv1O,rinv2O;
            ^~~
../../../src/tools/calcpot.c:78:8: warning: unused variable 'txO' [-Wunused-variable]
   real txO,tyO,tzO,vcO,fsO,qO,rsqO,rinv1O,rinv2O;
        ^~~
../../../src/tools/calcpot.c:76:28: warning: unused variable 'fzO' [-Wunused-variable]
   real fxJ,fyJ,fzJ,fxO,fyO,fzO;
                            ^~~
../../../src/tools/calcpot.c:76:24: warning: unused variable 'fyO' [-Wunused-variable]
   real fxJ,fyJ,fzJ,fxO,fyO,fzO;
                        ^~~
../../../src/tools/calcpot.c:76:20: warning: unused variable 'fxO' [-Wunused-variable]
   real fxJ,fyJ,fzJ,fxO,fyO,fzO;
                    ^~~
../../../src/tools/calcpot.c:76:16: warning: unused variable 'fzJ' [-Wunused-variable]
   real fxJ,fyJ,fzJ,fxO,fyO,fzO;
                ^~~
../../../src/tools/calcpot.c:76:12: warning: unused variable 'fyJ' [-Wunused-variable]
   real fxJ,fyJ,fzJ,fxO,fyO,fzO;
            ^~~
../../../src/tools/calcpot.c:76:8: warning: unused variable 'fxJ' [-Wunused-variable]
   real fxJ,fyJ,fzJ,fxO,fyO,fzO;
        ^~~
../../../src/tools/calcpot.c:75:38: warning: unused variable 'ggid' [-Wunused-variable]
   int  ii,k,n,jnr,ii3,nj0,nj1,is3,j3,ggid;
                                      ^~~~
../../../src/tools/calcpot.c:71:50: warning: unused variable 'FF' [-Wunused-variable]
   real r1,r1t,fijC,eps,eps2,Y,F,Fp,Geps,Heps2,VV,FF;
                                                  ^~
../../../src/tools/calcpot.c:71:15: warning: unused variable 'fijC' [-Wunused-variable]
   real r1,r1t,fijC,eps,eps2,Y,F,Fp,Geps,Heps2,VV,FF;
               ^~~~
../../../src/tools/calcpot.c:70:14: warning: unused variable 'two' [-Wunused-variable]
   const real two = 2.000000;
              ^~~
../../../src/tools/calcpot.c: In function 'calc_pot':
../../../src/tools/calcpot.c:176:15: warning: variable 'box_size' set but not used [-Wunused-but-set-variable]
   rvec        box_size;
               ^~~~~~~~
../../../src/tools/calcpot.c: In function 'init_calcpot':
../../../src/tools/calcpot.c:238:12: warning: variable 'box_size' set but not used [-Wunused-but-set-variable]
   rvec     box_size;
            ^~~~~~~~
In file included from ../../../src/tools/calcpot.c:46:
At top level:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/tools/calcpot.c:40:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/calcpot.c:40:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_genion.lo ../../../src/tools/gmx_genion.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_genion.c  -fPIC -DPIC -o .libs/gmx_genion.o
../../../src/tools/gmx_genion.c: In function 'insert_ion':
../../../src/tools/gmx_genion.c:72:8: warning: unused variable 'xei' [-Wunused-variable]
   rvec xei,dx;
        ^~~
../../../src/tools/gmx_genion.c:70:29: warning: unused variable 'm' [-Wunused-variable]
   int  i,ii,ei,owater,wlast,m,nw;
                             ^
../../../src/tools/gmx_genion.c:70:23: warning: unused variable 'wlast' [-Wunused-variable]
   int  i,ii,ei,owater,wlast,m,nw;
                       ^~~~~
../../../src/tools/gmx_genion.c:70:16: warning: unused variable 'owater' [-Wunused-variable]
   int  i,ii,ei,owater,wlast,m,nw;
                ^~~~~~
In file included from ../../../src/tools/gmx_genion.c:54:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/tools/gmx_genion.c:51:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_genion.c:48:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_genion.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_genion.c:41:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o genrestr.o ../../../src/tools/genrestr.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_nmtraj.o ../../../src/tools/g_nmtraj.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o trjcat.o ../../../src/tools/trjcat.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o trjconv.o ../../../src/tools/trjconv.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o trjorder.o ../../../src/tools/trjorder.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o wheel.o ../../../src/tools/wheel.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o xpm2ps.o ../../../src/tools/xpm2ps.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o genion.o ../../../src/tools/genion.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o edittop.lo ../../../src/tools/edittop.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/edittop.c  -fPIC -DPIC -o .libs/edittop.o
../../../src/tools/edittop.c: In function 'delete_from_block':
../../../src/tools/edittop.c:104:17: warning: unused variable 'k' [-Wunused-variable]
   int i,i1,j1,j,k;
                 ^
../../../src/tools/edittop.c:104:12: warning: unused variable 'j1' [-Wunused-variable]
   int i,i1,j1,j,k;
            ^~
../../../src/tools/edittop.c: In function 'delete_atom':
../../../src/tools/edittop.c:161:7: warning: unused variable 'k' [-Wunused-variable]
   int k;
       ^
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o mk_angndx.o ../../../src/tools/mk_angndx.c
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/mk_angndx.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/mk_angndx.c:42:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_analyze.o ../../../src/tools/g_analyze.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_anaeig.o ../../../src/tools/g_anaeig.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_angle.o ../../../src/tools/g_angle.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_bond.o ../../../src/tools/g_bond.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_bundle.o ../../../src/tools/g_bundle.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o anadock.o ../../../src/tools/anadock.c
../../../src/tools/anadock.c: In function 'rmsd_dist':
../../../src/tools/anadock.c:197:13: warning: variable 'dist' set but not used [-Wunused-but-set-variable]
   real rmsd,dist;
             ^~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/anadock.c:47:
At top level:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/anadock.c:46:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/anadock.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/anadock.c:41:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
../../../src/tools/anadock.c: In function 'main':
../../../src/tools/anadock.c:110:22: warning: '%d' directive writing between 1 and 10 bytes into a region of size between 0 and 255 [-Wformat-overflow=]
     sprintf(name,"%s_%d.pdb",buf,i+1);
                      ^~
../../../src/tools/anadock.c:110:18: note: directive argument in the range [1, 2147483647]
     sprintf(name,"%s_%d.pdb",buf,i+1);
                  ^~~~~~~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../include/typedefs.h:52,
                 from ../../../include/confio.h:44,
                 from ../../../src/tools/anadock.c:40:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 7 and 271 bytes into a destination of size 256
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_cluster.o ../../../src/tools/g_cluster.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_chi.o ../../../src/tools/g_chi.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_confrms.o ../../../src/tools/g_confrms.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o addconf.lo ../../../src/tools/addconf.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/addconf.c  -fPIC -DPIC -o .libs/addconf.o
../../../src/tools/addconf.c: In function 'do_nsgrid':
../../../src/tools/addconf.c:205:14: warning: variable 'box_size' set but not used [-Wunused-but-set-variable]
   rvec       box_size;
              ^~~~~~~~
../../../src/tools/addconf.c: In function 'add_conf':
../../../src/tools/addconf.c:328:23: warning: unused variable 'xpp' [-Wunused-variable]
   rvec       dx,xi,xj,xpp,*x_all,*v_all;
                       ^~~
../../../src/tools/addconf.c:326:34: warning: unused variable 'dz1' [-Wunused-variable]
   int        dx0,dx1,dy0,dy1,dz0,dz1;
                                  ^~~
../../../src/tools/addconf.c:326:30: warning: unused variable 'dz0' [-Wunused-variable]
   int        dx0,dx1,dy0,dy1,dz0,dz1;
                              ^~~
../../../src/tools/addconf.c:326:26: warning: unused variable 'dy1' [-Wunused-variable]
   int        dx0,dx1,dy0,dy1,dz0,dz1;
                          ^~~
../../../src/tools/addconf.c:326:22: warning: unused variable 'dy0' [-Wunused-variable]
   int        dx0,dx1,dy0,dy1,dz0,dz1;
                      ^~~
../../../src/tools/addconf.c:326:18: warning: unused variable 'dx1' [-Wunused-variable]
   int        dx0,dx1,dy0,dy1,dz0,dz1;
                  ^~~
../../../src/tools/addconf.c:326:14: warning: unused variable 'dx0' [-Wunused-variable]
   int        dx0,dx1,dy0,dy1,dz0,dz1;
              ^~~
../../../src/tools/addconf.c:325:44: warning: unused variable 'maxincell' [-Wunused-variable]
   int        prev,resnr,nresadd,d,k,ncells,maxincell;
                                            ^~~~~~~~~
../../../src/tools/addconf.c:325:37: warning: unused variable 'ncells' [-Wunused-variable]
   int        prev,resnr,nresadd,d,k,ncells,maxincell;
                                     ^~~~~~
../../../src/tools/addconf.c:325:35: warning: unused variable 'k' [-Wunused-variable]
   int        prev,resnr,nresadd,d,k,ncells,maxincell;
                                   ^
../../../src/tools/addconf.c:325:33: warning: unused variable 'd' [-Wunused-variable]
   int        prev,resnr,nresadd,d,k,ncells,maxincell;
                                 ^
../../../src/tools/addconf.c:325:19: warning: unused variable 'resnr' [-Wunused-variable]
   int        prev,resnr,nresadd,d,k,ncells,maxincell;
                   ^~~~~
../../../src/tools/addconf.c:324:47: warning: unused variable 'iprot' [-Wunused-variable]
   int        i,j,jj,m,j0,j1,jjj,jnres,jnr,inr,iprot,is1,is2;
                                               ^~~~~
../../../src/tools/addconf.c:324:21: warning: unused variable 'm' [-Wunused-variable]
   int        i,j,jj,m,j0,j1,jjj,jnres,jnr,inr,iprot,is1,is2;
                     ^
../../../src/tools/addconf.c:324:18: warning: unused variable 'jj' [-Wunused-variable]
   int        i,j,jj,m,j0,j1,jjj,jnres,jnr,inr,iprot,is1,is2;
                  ^~
../../../src/tools/addconf.c:322:47: warning: unused variable 'ib2' [-Wunused-variable]
   real       max_vdw,*r_prot,*r_all,n2,r2,ib1,ib2;
                                               ^~~
../../../src/tools/addconf.c:322:43: warning: unused variable 'ib1' [-Wunused-variable]
   real       max_vdw,*r_prot,*r_all,n2,r2,ib1,ib2;
                                           ^~~
At top level:
../../../src/tools/addconf.c:70:13: warning: 'set_margin' defined but not used [-Wunused-function]
 static void set_margin(t_atoms *atoms, rvec *x, real *r)
             ^~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/addconf.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/addconf.c:46:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/tools/addconf.c:42:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/addconf.c:42:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
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/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_eneconv.lo ../../../src/tools/gmx_eneconv.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_eneconv.c  -fPIC -DPIC -o .libs/gmx_eneconv.o
../../../src/tools/gmx_eneconv.c: In function 'gmx_eneconv':
../../../src/tools/gmx_eneconv.c:427:14: warning: unused variable 'ok' [-Wunused-variable]
   bool       ok;
              ^~
../../../src/tools/gmx_eneconv.c:426:35: warning: unused variable 'chptr' [-Wunused-variable]
   char       inputstring[STRLEN],*chptr;
                                   ^~~~~
../../../src/tools/gmx_eneconv.c:426:14: warning: unused variable 'inputstring' [-Wunused-variable]
   char       inputstring[STRLEN],*chptr;
              ^~~~~~~~~~~
../../../src/tools/gmx_eneconv.c:425:42: warning: unused variable 't1' [-Wunused-variable]
   real       *readtime,*settime,timestep,t1,tadjust;
                                          ^~
../../../src/tools/gmx_eneconv.c:421:42: warning: unused variable 'j' [-Wunused-variable]
   int        nre,nremax,this_nre,nfile,i,j,kkk,nset,*set=NULL;
                                          ^
At top level:
../../../src/tools/gmx_eneconv.c:101:13: warning: 'same_time' defined but not used [-Wunused-function]
 static bool same_time(real t1,real t2)
             ^~~~~~~~~
In file included from ../../../src/tools/gmx_eneconv.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_eneconv.c:45:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
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i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_rotacf.o ../../../src/tools/g_rotacf.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_spol.o ../../../src/tools/g_spol.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_sgangle.o ../../../src/tools/g_sgangle.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_sorient.o ../../../src/tools/g_sorient.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_sham.o ../../../src/tools/g_sham.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_sdf.o ../../../src/tools/g_sdf.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_spatial.o ../../../src/tools/g_spatial.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_traj.o ../../../src/tools/g_traj.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_vanhove.o ../../../src/tools/g_vanhove.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_mdmat.o ../../../src/tools/g_mdmat.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_velacc.o ../../../src/tools/g_velacc.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o make_edi.o ../../../src/tools/make_edi.c
../../../src/tools/make_edi.c: In function 'sscan_list':
../../../src/tools/make_edi.c:185:14: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
              else status=sError; break;
              ^~~~
../../../src/tools/make_edi.c:185:34: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else'
              else status=sError; break;
                                  ^~~~~
../../../src/tools/make_edi.c: In function 'main':
../../../src/tools/make_edi.c:640:10: warning: variable 'bTop' set but not used [-Wunused-but-set-variable]
     bool bTop, bFit1;
          ^~~~
In file included from ../../../src/tools/make_edi.c:56:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/tools/make_edi.c:52:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/make_edi.c:50:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/make_edi.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/make_edi.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_tcaf.o ../../../src/tools/g_tcaf.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_wham.o ../../../src/tools/g_wham.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_clustsize.o ../../../src/tools/g_clustsize.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_kinetics.o ../../../src/tools/g_kinetics.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o sigeps.o ../../../src/tools/sigeps.c
../../../src/tools/sigeps.c: In function 'main':
../../../src/tools/sigeps.c:106:42: warning: unused variable 'pp' [-Wunused-variable]
   real      qq,x,oldx,minimum,mval,dp[2],pp[2];
                                          ^~
In file included from ../../../src/tools/sigeps.c:50:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/sigeps.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/sigeps.c:47:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/tools/sigeps.c:44:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/sigeps.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_editconf.lo ../../../src/tools/gmx_editconf.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_editconf.c  -fPIC -DPIC -o .libs/gmx_editconf.o
../../../src/tools/gmx_editconf.c: In function 'calc_geom':
../../../src/tools/gmx_editconf.c:103:12: warning: unused variable 'grpnames' [-Wunused-variable]
   char    *grpnames;
            ^~~~~~~~
../../../src/tools/gmx_editconf.c: In function 'set_pdb_conf_bfac':
../../../src/tools/gmx_editconf.c:195:9: warning: unused variable 'out' [-Wunused-variable]
   FILE *out;
         ^~~
../../../src/tools/gmx_editconf.c: In function 'gmx_editconf':
../../../src/tools/gmx_editconf.c:518:35: warning: unused variable 'zcent' [-Wunused-variable]
   real       xs,ys,zs,xcent,ycent,zcent,diam=0,mass=0,d,vdw;
                                   ^~~~~
../../../src/tools/gmx_editconf.c:518:29: warning: unused variable 'ycent' [-Wunused-variable]
   real       xs,ys,zs,xcent,ycent,zcent,diam=0,mass=0,d,vdw;
                             ^~~~~
../../../src/tools/gmx_editconf.c:518:23: warning: unused variable 'xcent' [-Wunused-variable]
   real       xs,ys,zs,xcent,ycent,zcent,diam=0,mass=0,d,vdw;
                       ^~~~~
../../../src/tools/gmx_editconf.c:518:20: warning: unused variable 'zs' [-Wunused-variable]
   real       xs,ys,zs,xcent,ycent,zcent,diam=0,mass=0,d,vdw;
                    ^~
../../../src/tools/gmx_editconf.c:518:17: warning: unused variable 'ys' [-Wunused-variable]
   real       xs,ys,zs,xcent,ycent,zcent,diam=0,mass=0,d,vdw;
                 ^~
../../../src/tools/gmx_editconf.c:518:14: warning: unused variable 'xs' [-Wunused-variable]
   real       xs,ys,zs,xcent,ycent,zcent,diam=0,mass=0,d,vdw;
              ^~
../../../src/tools/gmx_editconf.c:516:38: warning: unused variable 'bCubic' [-Wunused-variable]
   bool       bIndex,bSetSize,bSetAng,bCubic,bDist,bSetCenter;
                                      ^~~~~~
../../../src/tools/gmx_editconf.c:512:30: warning: unused variable 'tindex' [-Wunused-variable]
   atom_id    *index,*sindex,*tindex;
                              ^~~~~~
../../../src/tools/gmx_editconf.c:511:26: warning: unused variable 'tsize' [-Wunused-variable]
   int        isize,ssize,tsize;
                          ^~~~~
../../../src/tools/gmx_editconf.c:456:33: warning: unused variable 'to_diam' [-Wunused-variable]
   static real dist=0.0,rbox=0.0,to_diam=0.0;
                                 ^~~~~~~
../../../src/tools/gmx_editconf.c:456:24: warning: unused variable 'rbox' [-Wunused-variable]
   static real dist=0.0,rbox=0.0,to_diam=0.0;
                        ^~~~
At top level:
../../../src/tools/gmx_editconf.c:456:24: warning: 'rbox' defined but not used [-Wunused-variable]
../../../src/tools/gmx_editconf.c:456:33: warning: 'to_diam' defined but not used [-Wunused-variable]
   static real dist=0.0,rbox=0.0,to_diam=0.0;
                                 ^~~~~~~
../../../src/tools/gmx_editconf.c:79:14: warning: 'pdbtp' defined but not used [-Wunused-variable]
 static char *pdbtp[epdbNR]={"ATOM  ","HETATM"};
              ^~~~~
In file included from ../../../src/tools/gmx_editconf.c:53:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_editconf.c:53:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_editconf.c:49:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_editconf.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_editconf.c:43:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_xpm2ps.lo ../../../src/tools/gmx_xpm2ps.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_xpm2ps.c  -fPIC -DPIC -o .libs/gmx_xpm2ps.o
../../../src/tools/gmx_xpm2ps.c: In function 'xpm_mat':
../../../src/tools/gmx_xpm2ps.c:559:14: warning: unused variable 'k' [-Wunused-variable]
   int    i,j,k,x,y,col;
              ^
../../../src/tools/gmx_xpm2ps.c:559:12: warning: unused variable 'j' [-Wunused-variable]
   int    i,j,k,x,y,col;
            ^
../../../src/tools/gmx_xpm2ps.c:558:10: warning: unused variable 'buf' [-Wunused-variable]
   char   buf[100];
          ^~~
../../../src/tools/gmx_xpm2ps.c: In function 'tick_spacing':
../../../src/tools/gmx_xpm2ps.c:599:18: warning: unused variable 'bFive' [-Wunused-variable]
   bool bTryAgain,bFive;
                  ^~~~~
../../../src/tools/gmx_xpm2ps.c: In function 'ps_mat':
../../../src/tools/gmx_xpm2ps.c:644:12: warning: unused variable 'j' [-Wunused-variable]
   int    i,j,x,y,col,leg=0;
            ^
../../../src/tools/gmx_xpm2ps.c: In function 'write_combined_matrix':
../../../src/tools/gmx_xpm2ps.c:919:14: warning: unused variable 'map' [-Wunused-variable]
   t_mapping *map=NULL;
              ^~~
../../../src/tools/gmx_xpm2ps.c: In function 'gmx_xpm2ps':
../../../src/tools/gmx_xpm2ps.c:1127:56: warning: unused variable 'bAdd' [-Wunused-variable]
   static bool bFrame=TRUE,bZeroLine=FALSE,bYonce=FALSE,bAdd=FALSE;
                                                        ^~~~
At top level:
../../../src/tools/gmx_xpm2ps.c:1127:56: warning: 'bAdd' defined but not used [-Wunused-variable]
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_xpm2ps.c:45:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_xpm2ps.c:42:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
../../../src/tools/gmx_xpm2ps.c: In function 'ps_mat':
../../../src/tools/gmx_xpm2ps.c:346:22: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=]
       sprintf(buf,"%g",mat[i].axis_x[j]);
                      ^
In file included from /usr/include/stdio.h:862,
                 from ../../../include/string2.h:56,
                 from ../../../src/tools/gmx_xpm2ps.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 2 and 14 bytes into a destination of size 12
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/tools/gmx_xpm2ps.c:374:22: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=]
       sprintf(buf,"%g",mat[i].axis_y[j]);
                      ^
In file included from /usr/include/stdio.h:862,
                 from ../../../include/string2.h:56,
                 from ../../../src/tools/gmx_xpm2ps.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 2 and 14 bytes into a destination of size 12
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o make_ndx.o ../../../src/tools/make_ndx.c
In file included from ../../../src/tools/make_ndx.c:52:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/make_ndx.c:52:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/make_ndx.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/make_ndx.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
../../../src/tools/make_ndx.c: In function 'main':
../../../src/tools/make_ndx.c:994:20: warning: '_&_' directive writing 3 bytes into a region of size between 1 and 4096 [-Wformat-overflow=]
   sprintf(gname,"%s_&_%s",gname1,gname2);
                    ^~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/tools/make_ndx.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 4 and 8194 bytes into a destination of size 4096
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/tools/make_ndx.c:990:21: warning: '%s' directive writing up to 4095 bytes into a region of size between 0 and 4095 [-Wformat-overflow=]
   sprintf(gname,"%s_%s",gname1,gname2);
                     ^~         ~~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/tools/make_ndx.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 2 and 8192 bytes into a destination of size 4096
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -version-info 5:0:0 -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o libgmxana.la -rpath /usr/lib autocorr.lo expfit.lo polynomials.lo levenmar.lo anadih.lo pp2shift.lo dlist.lo eigio.lo lsq.lo cmat.lo eigensolver.lo nsc.lo hxprops.lo fitahx.lo gmx_analyze.lo gmx_anaeig.lo gmx_angle.lo gmx_bond.lo gmx_bundle.lo gmx_chi.lo gmx_cluster.lo gmx_confrms.lo gmx_covar.lo gmx_current.lo gmx_density.lo gmx_densmap.lo gmx_dih.lo gmx_dielectric.lo gmx_kinetics.lo gmx_spatial.lo gmx_dipoles.lo gmx_disre.lo gmx_dist.lo gmx_dyndom.lo gmx_enemat.lo gmx_energy.lo gmx_lie.lo gmx_filter.lo gmx_gyrate.lo gmx_h2order.lo gmx_hbond.lo gmx_helix.lo gmx_mindist.lo gmx_msd.lo gmx_morph.lo gmx_nmeig.lo gmx_nmens.lo gmx_order.lo gmx_principal.lo gmx_polystat.lo gmx_potential.lo gmx_rama.lo gmx_rdf.lo gmx_rms.lo gmx_rmsdist.lo gmx_rmsf.lo gmx_rotacf.lo gmx_saltbr.lo gmx_sas.lo gmx_sdf.lo gmx_sgangle.lo gmx_sorient.lo gmx_spol.lo gmx_tcaf.lo gmx_traj.lo gmx_velacc.lo gmx_helixorient.lo gmx_clustsize.lo gmx_mdmat.lo gmx_wham.lo correl.lo gmx_sham.lo gmx_nmtraj.lo gmx_trjconv.lo gmx_trjcat.lo gmx_trjorder.lo gmx_xpm2ps.lo gmx_editconf.lo gmx_genbox.lo gmx_genion.lo gmx_genconf.lo gmx_genpr.lo gmx_eneconv.lo gmx_vanhove.lo gmx_wheel.lo addconf.lo calcpot.lo edittop.lo ../gmxlib/libgmx.la	../mdlib/libmd.la	 -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
i586-alt-linux-gcc -shared  .libs/autocorr.o .libs/expfit.o .libs/polynomials.o .libs/levenmar.o .libs/anadih.o .libs/pp2shift.o .libs/dlist.o .libs/eigio.o .libs/lsq.o .libs/cmat.o .libs/eigensolver.o .libs/nsc.o .libs/hxprops.o .libs/fitahx.o .libs/gmx_analyze.o .libs/gmx_anaeig.o .libs/gmx_angle.o .libs/gmx_bond.o .libs/gmx_bundle.o .libs/gmx_chi.o .libs/gmx_cluster.o .libs/gmx_confrms.o .libs/gmx_covar.o .libs/gmx_current.o .libs/gmx_density.o .libs/gmx_densmap.o .libs/gmx_dih.o .libs/gmx_dielectric.o .libs/gmx_kinetics.o .libs/gmx_spatial.o .libs/gmx_dipoles.o .libs/gmx_disre.o .libs/gmx_dist.o .libs/gmx_dyndom.o .libs/gmx_enemat.o .libs/gmx_energy.o .libs/gmx_lie.o .libs/gmx_filter.o .libs/gmx_gyrate.o .libs/gmx_h2order.o .libs/gmx_hbond.o .libs/gmx_helix.o .libs/gmx_mindist.o .libs/gmx_msd.o .libs/gmx_morph.o .libs/gmx_nmeig.o .libs/gmx_nmens.o .libs/gmx_order.o .libs/gmx_principal.o .libs/gmx_polystat.o .libs/gmx_potential.o .libs/gmx_rama.o .libs/gmx_rdf.o .libs/gmx_rms.o .libs/gmx_rmsdist.o .libs/gmx_rmsf.o .libs/gmx_rotacf.o .libs/gmx_saltbr.o .libs/gmx_sas.o .libs/gmx_sdf.o .libs/gmx_sgangle.o .libs/gmx_sorient.o .libs/gmx_spol.o .libs/gmx_tcaf.o .libs/gmx_traj.o .libs/gmx_velacc.o .libs/gmx_helixorient.o .libs/gmx_clustsize.o .libs/gmx_mdmat.o .libs/gmx_wham.o .libs/correl.o .libs/gmx_sham.o .libs/gmx_nmtraj.o .libs/gmx_trjconv.o .libs/gmx_trjcat.o .libs/gmx_trjorder.o .libs/gmx_xpm2ps.o .libs/gmx_editconf.o .libs/gmx_genbox.o .libs/gmx_genion.o .libs/gmx_genconf.o .libs/gmx_genpr.o .libs/gmx_eneconv.o .libs/gmx_vanhove.o .libs/gmx_wheel.o .libs/addconf.o .libs/calcpot.o .libs/edittop.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/lib/openmpi/lib ../gmxlib/.libs/libgmx.so ../mdlib/.libs/libmd.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so  -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wl,-Rpath:/usr/lib/openmpi/lib -Wl,-soname -Wl,libgmxana.so.5 -o .libs/libgmxana.so.5.0.0
(cd .libs && rm -f libgmxana.so.5 && ln -s libgmxana.so.5.0.0 libgmxana.so.5)
(cd .libs && rm -f libgmxana.so && ln -s libgmxana.so.5.0.0 libgmxana.so)
creating libgmxana.la
(cd .libs && rm -f libgmxana.la && ln -s ../libgmxana.la libgmxana.la)
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o editconf editconf.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_editconf.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/editconf editconf.o .libs/gmx_editconf.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating editconf
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o genrestr genrestr.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_genpr.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/genrestr genrestr.o .libs/gmx_genpr.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating genrestr
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o do_dssp do_dssp.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/do_dssp do_dssp.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating do_dssp
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o genbox genbox.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/addconf.o .libs/gmx_genbox.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/genbox genbox.o .libs/addconf.o .libs/gmx_genbox.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating genbox
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o genconf genconf.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_genconf.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/genconf genconf.o .libs/gmx_genconf.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating genconf
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o eneconv eneconv.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_eneconv.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/eneconv eneconv.o .libs/gmx_eneconv.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating eneconv
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_nmtraj g_nmtraj.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/eigio.o .libs/gmx_nmtraj.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_nmtraj g_nmtraj.o .libs/eigio.o .libs/gmx_nmtraj.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_nmtraj
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o make_ndx make_ndx.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/make_ndx make_ndx.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating make_ndx
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o trjconv trjconv.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_trjconv.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/trjconv trjconv.o .libs/gmx_trjconv.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating trjconv
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o trjcat trjcat.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_trjcat.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/trjcat trjcat.o .libs/gmx_trjcat.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating trjcat
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make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o mk_angndx mk_angndx.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/mk_angndx mk_angndx.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating mk_angndx
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o xpm2ps xpm2ps.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_xpm2ps.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/xpm2ps xpm2ps.o .libs/gmx_xpm2ps.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating xpm2ps
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
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/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o trjorder trjorder.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_trjorder.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/trjorder trjorder.o .libs/gmx_trjorder.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating trjorder
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o wheel wheel.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_wheel.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/wheel wheel.o .libs/gmx_wheel.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating wheel
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o genion genion.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/calcpot.o .libs/gmx_genion.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/genion genion.o .libs/calcpot.o .libs/gmx_genion.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating genion
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make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o anadock anadock.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/lsq.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/anadock anadock.o .libs/lsq.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating anadock
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_anaeig g_anaeig.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/eigio.o .libs/gmx_anaeig.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_anaeig g_anaeig.o .libs/eigio.o .libs/gmx_anaeig.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_anaeig
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_angle g_angle.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/dlist.o .libs/anadih.o .libs/gmx_angle.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_angle g_angle.o .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/dlist.o .libs/anadih.o .libs/gmx_angle.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_angle
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o make_edi make_edi.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/eigio.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/make_edi make_edi.o .libs/eigio.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating make_edi
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_bond g_bond.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/lsq.o .libs/gmx_bond.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_bond g_bond.o .libs/lsq.o .libs/gmx_bond.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_bond
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/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_bundle g_bundle.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_bundle.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_bundle g_bundle.o .libs/gmx_bundle.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_bundle
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make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_analyze g_analyze.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_hbond.o .libs/gmx_analyze.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_analyze g_analyze.o .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_hbond.o .libs/gmx_analyze.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_analyze
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/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_chi g_chi.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/pp2shift.o .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/dlist.o .libs/anadih.o .libs/gmx_chi.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_chi g_chi.o .libs/pp2shift.o .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/dlist.o .libs/anadih.o .libs/gmx_chi.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_chi
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_cluster g_cluster.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/eigensolver.o .libs/cmat.o .libs/gmx_cluster.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_cluster g_cluster.o .libs/eigensolver.o .libs/cmat.o .libs/gmx_cluster.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_cluster
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/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_confrms g_confrms.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_confrms.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_confrms g_confrms.o .libs/gmx_confrms.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_confrms
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/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_current g_current.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_current.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_current g_current.o .libs/gmx_current.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_current
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/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_density g_density.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_density.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_density g_density.o .libs/gmx_density.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_density
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/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_dih g_dih.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_dih.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_dih g_dih.o .libs/gmx_dih.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_dih
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/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_covar g_covar.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/eigensolver.o .libs/eigio.o .libs/gmx_covar.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_covar g_covar.o .libs/eigensolver.o .libs/eigio.o .libs/gmx_covar.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_covar
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/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_helixorient g_helixorient.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_helixorient.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_helixorient g_helixorient.o .libs/gmx_helixorient.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_helixorient
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/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_densmap g_densmap.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_densmap.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_densmap g_densmap.o .libs/gmx_densmap.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_densmap
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/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_dielectric g_dielectric.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/gmx_dielectric.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_dielectric g_dielectric.o .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/gmx_dielectric.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_dielectric
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/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_principal g_principal.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_principal.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_principal g_principal.o .libs/gmx_principal.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_principal
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/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_dipoles g_dipoles.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/lsq.o .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/gmx_dipoles.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_dipoles g_dipoles.o .libs/lsq.o .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/gmx_dipoles.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_dipoles
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/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_enemat g_enemat.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_enemat.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_enemat g_enemat.o .libs/gmx_enemat.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_enemat
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make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_dist g_dist.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_dist.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_dist g_dist.o .libs/gmx_dist.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_dist
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_dyndom g_dyndom.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_dyndom.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_dyndom g_dyndom.o .libs/gmx_dyndom.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_dyndom
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_disre g_disre.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_disre.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_disre g_disre.o .libs/gmx_disre.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_disre
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_energy g_energy.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/gmx_energy.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_energy g_energy.o .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/gmx_energy.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_energy
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_lie g_lie.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_lie.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_lie g_lie.o .libs/gmx_lie.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_lie
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_filter g_filter.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_filter.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_filter g_filter.o .libs/gmx_filter.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_filter
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_h2order g_h2order.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_h2order.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_h2order g_h2order.o .libs/gmx_h2order.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_h2order
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make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_helix g_helix.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/hxprops.o .libs/fitahx.o .libs/gmx_helix.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_helix g_helix.o .libs/hxprops.o .libs/fitahx.o .libs/gmx_helix.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_helix
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
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/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_gyrate g_gyrate.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/gmx_gyrate.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_gyrate g_gyrate.o .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/gmx_gyrate.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_gyrate
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_hbond g_hbond.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_hbond.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_hbond g_hbond.o .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_hbond.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_hbond
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_mindist g_mindist.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_mindist.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_mindist g_mindist.o .libs/gmx_mindist.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_mindist
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_msd g_msd.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/lsq.o .libs/gmx_msd.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_msd g_msd.o .libs/lsq.o .libs/gmx_msd.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_msd
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_morph g_morph.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_morph.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_morph g_morph.o .libs/gmx_morph.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_morph
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make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_nmens g_nmens.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/eigensolver.o .libs/eigio.o .libs/gmx_nmens.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_nmens g_nmens.o .libs/eigensolver.o .libs/eigio.o .libs/gmx_nmens.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_nmens
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_nmeig g_nmeig.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/eigensolver.o .libs/eigio.o .libs/gmx_nmeig.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_nmeig g_nmeig.o .libs/eigensolver.o .libs/eigio.o .libs/gmx_nmeig.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_nmeig
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
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/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_order g_order.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_order.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_order g_order.o .libs/gmx_order.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_order
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_polystat g_polystat.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_polystat.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_polystat g_polystat.o .libs/gmx_polystat.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_polystat
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_rms g_rms.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/cmat.o .libs/gmx_rms.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_rms g_rms.o .libs/cmat.o .libs/gmx_rms.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_rms
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_potential g_potential.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_potential.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_potential g_potential.o .libs/gmx_potential.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_potential
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/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_rdf g_rdf.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_rdf.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_rdf g_rdf.o .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_rdf.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_rdf
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_rama g_rama.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_rama.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_rama g_rama.o .libs/gmx_rama.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_rama
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_rmsdist g_rmsdist.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_rmsdist.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_rmsdist g_rmsdist.o .libs/gmx_rmsdist.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_rmsdist
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_rmsf g_rmsf.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/eigensolver.o .libs/gmx_rmsf.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_rmsf g_rmsf.o .libs/eigensolver.o .libs/gmx_rmsf.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_rmsf
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_rotacf g_rotacf.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_rotacf.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_rotacf g_rotacf.o .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_rotacf.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_rotacf
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_saltbr g_saltbr.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_saltbr.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_saltbr g_saltbr.o .libs/gmx_saltbr.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_saltbr
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
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/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_sas g_sas.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/nsc.o .libs/gmx_sas.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_sas g_sas.o .libs/nsc.o .libs/gmx_sas.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_sas
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
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/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_sgangle g_sgangle.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_sgangle.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_sgangle g_sgangle.o .libs/gmx_sgangle.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_sgangle
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/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_sham g_sham.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_sham.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_sham g_sham.o .libs/gmx_sham.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_sham
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_sorient g_sorient.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_sorient.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_sorient g_sorient.o .libs/gmx_sorient.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_sorient
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/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_sdf g_sdf.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_sdf.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_sdf g_sdf.o .libs/gmx_sdf.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_sdf
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_spol g_spol.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_spol.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_spol g_spol.o .libs/gmx_spol.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_spol
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_spatial g_spatial.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_spatial.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_spatial g_spatial.o .libs/gmx_spatial.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_spatial
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_traj g_traj.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_traj.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_traj g_traj.o .libs/gmx_traj.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_traj
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make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_tcaf g_tcaf.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_tcaf.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_tcaf g_tcaf.o .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_tcaf.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_tcaf
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
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/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_vanhove g_vanhove.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_vanhove.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_vanhove g_vanhove.o .libs/gmx_vanhove.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_vanhove
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
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/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_velacc g_velacc.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_velacc.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_velacc g_velacc.o .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_velacc.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_velacc
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_clustsize g_clustsize.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_clustsize.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_clustsize g_clustsize.o .libs/gmx_clustsize.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_clustsize
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
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/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_mdmat g_mdmat.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_mdmat.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_mdmat g_mdmat.o .libs/gmx_mdmat.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_mdmat
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_wham g_wham.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_wham.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_wham g_wham.o .libs/gmx_wham.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_wham
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_kinetics g_kinetics.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_kinetics.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_kinetics g_kinetics.o .libs/gmx_kinetics.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_kinetics
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make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o sigeps sigeps.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/sigeps sigeps.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating sigeps
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
Making all in ngmx
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o xmb.o ../../../src/ngmx/xmb.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o ngmx.o ../../../src/ngmx/ngmx.c
../../../src/ngmx/ngmx.c: In function 'dump_xw':
../../../src/ngmx/ngmx.c:68:8: warning: variable 'rc' set but not used [-Wunused-but-set-variable]
   int  rc;
        ^~
../../../src/ngmx/ngmx.c: In function 'init_gmx':
../../../src/ngmx/ngmx.c:354:35: warning: unused variable 'nre' [-Wunused-variable]
   int                  step,natom,nre,natom_trx;
                                   ^~~
At top level:
../../../src/ngmx/ngmx.c:65:13: warning: 'dump_xw' defined but not used [-Wunused-function]
 static void dump_xw(char *dispname,Window w,char *fn)
             ^~~~~~~
In file included from ../../../src/ngmx/ngmx.c:52:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/ngmx/ngmx.c:49:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o x11.o ../../../src/ngmx/x11.c
../../../src/ngmx/x11.c:265:13: warning: 'Xrm' defined but not used [-Wunused-function]
 static void Xrm(int *argc, char *argv[])
             ^~~
../../../src/ngmx/x11.c:132:13: warning: 'TestEvent' defined but not used [-Wunused-function]
 static Bool TestEvent(Display *disp,XEvent *event,char *arg)
             ^~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o popup.o ../../../src/ngmx/popup.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o xutil.o ../../../src/ngmx/xutil.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o xdlghi.o ../../../src/ngmx/xdlghi.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o fgrid.o ../../../src/ngmx/fgrid.c
../../../src/ngmx/fgrid.c: In function 'GetBuf':
../../../src/ngmx/fgrid.c:101:7: warning: variable 'rc' set but not used [-Wunused-but-set-variable]
   int rc;
       ^~
../../../src/ngmx/fgrid.c: In function 'FGridFromFile':
../../../src/ngmx/fgrid.c:346:8: warning: unused variable 'newinfile' [-Wunused-variable]
   char newinfile[STRLEN];
        ^~~~~~~~~
../../../src/ngmx/fgrid.c:345:9: warning: unused variable 'gmxlib' [-Wunused-variable]
   char *gmxlib;
         ^~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o xdlgitem.o ../../../src/ngmx/xdlgitem.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o xdlg.o ../../../src/ngmx/xdlg.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o pulldown.o ../../../src/ngmx/pulldown.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nmol.o ../../../src/ngmx/nmol.c
../../../src/ngmx/nmol.c: In function 'draw_box':
../../../src/ngmx/nmol.c:422:23: warning: unused variable 'tv2' [-Wunused-variable]
   iv2  vec2[NCUCEDGE],tv2;
                       ^~~
In file included from ../../../src/ngmx/nmol.c:51:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/ngmx/nmol.c:51:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o logo.o ../../../src/ngmx/logo.c
In file included from ../../../src/ngmx/logo.c:45:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o filter.o ../../../src/ngmx/filter.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o buttons.o ../../../src/ngmx/buttons.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nleg.o ../../../src/ngmx/nleg.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o molps.o ../../../src/ngmx/molps.c
../../../src/ngmx/molps.c: In function 'ps_draw_mol':
../../../src/ngmx/molps.c:204:15: warning: unused variable 'ntime' [-Wunused-variable]
   static int  ntime=0;
               ^~~~~
../../../src/ngmx/molps.c:203:15: warning: unused variable 'tstr' [-Wunused-variable]
   static char tstr[2][20];
               ^~~~
At top level:
../../../src/ngmx/molps.c:203:15: warning: 'tstr' defined but not used [-Wunused-variable]
../../../src/ngmx/molps.c:204:15: warning: 'ntime' defined but not used [-Wunused-variable]
   static int  ntime=0;
               ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dialogs.o ../../../src/ngmx/dialogs.c
../../../src/ngmx/dialogs.c:373:13: warning: 'in_set' defined but not used [-Wunused-function]
 static bool in_set(int i,int n,int set[])
             ^~~~~~
../../../src/ngmx/dialogs.c:240:13: warning: 'Extract' defined but not used [-Wunused-function]
 static void Extract(t_dlg *dlg,int ID,char *buf)
             ^~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o xrama.o ../../../src/ngmx/xrama.c
../../../src/ngmx/xrama.c: In function 'main':
../../../src/ngmx/xrama.c:319:15: warning: variable 'ramatop' set but not used [-Wunused-but-set-variable]
   t_topology *ramatop;
               ^~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/ngmx/xrama.c:50:
At top level:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/ngmx/xrama.c:44:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o highway.o ../../../src/ngmx/highway.c
In file included from ../../../include/statutil.h:51,
                 from ../../../src/ngmx/highway.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/ngmx/highway.c:46:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o manager.o ../../../src/ngmx/manager.c
../../../src/ngmx/manager.c: In function 'set_file':
../../../src/ngmx/manager.c:182:18: warning: unused variable 'idum' [-Wunused-variable]
   int          i,idum;
                  ^~~~
../../../src/ngmx/manager.c: In function 'step_man':
../../../src/ngmx/manager.c:312:15: warning: unused variable 'dum' [-Wunused-variable]
   int         dum;
               ^~~
../../../src/ngmx/manager.c:311:15: warning: unused variable 'rdum' [-Wunused-variable]
   real        rdum;
               ^~~~
In file included from ../../../src/ngmx/manager.c:57:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/ngmx/manager.c:56:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/ngmx/manager.c:55:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/ngmx/manager.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
../../../src/ngmx/manager.c: In function 'set_file':
../../../src/ngmx/manager.c:213:20: warning: '%s' directive writing up to 255 bytes into a region of size 254 [-Wformat-overflow=]
   sprintf(buf,"%s: %s",*man->top.name,quote);
                    ^~                 ~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/ngmx/manager.c:40:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 3 or more bytes (assuming 258) into a destination of size 256
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o xrama xrama.o xutil.o xmb.o x11.o xdlghi.o fgrid.o xdlgitem.o popup.o pulldown.o xdlg.o manager.o buttons.o nmol.o nleg.o dialogs.o logo.o filter.o molps.o ../mdlib/libmd.la ../gmxlib/libgmx.la -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
mkdir .libs
i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -o .libs/xrama xrama.o xutil.o xmb.o x11.o xdlghi.o fgrid.o xdlgitem.o popup.o pulldown.o xdlg.o manager.o buttons.o nmol.o nleg.o dialogs.o logo.o filter.o molps.o  -lgslcblas ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath 
creating xrama
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o ngmx ngmx.o xutil.o xmb.o x11.o xdlghi.o fgrid.o xdlgitem.o popup.o pulldown.o xdlg.o manager.o buttons.o nmol.o nleg.o dialogs.o logo.o filter.o molps.o ../mdlib/libmd.la ../gmxlib/libgmx.la -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
mkdir .libs
mkdir: cannot create directory '.libs': File exists
i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -o .libs/ngmx ngmx.o xutil.o xmb.o x11.o xdlghi.o fgrid.o xdlgitem.o popup.o pulldown.o xdlg.o manager.o buttons.o nmol.o nleg.o dialogs.o logo.o filter.o molps.o  -lgslcblas ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath 
creating ngmx
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o highway highway.o xutil.o xmb.o x11.o xdlghi.o fgrid.o xdlgitem.o popup.o pulldown.o xdlg.o manager.o buttons.o nmol.o nleg.o dialogs.o logo.o filter.o molps.o ../mdlib/libmd.la ../gmxlib/libgmx.la -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
mkdir .libs
mkdir: cannot create directory '.libs': File exists
i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -o .libs/highway highway.o xutil.o xmb.o x11.o xdlghi.o fgrid.o xdlgitem.o popup.o pulldown.o xdlg.o manager.o buttons.o nmol.o nleg.o dialogs.o logo.o filter.o molps.o  -lgslcblas ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath 
creating highway
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx'
Making all in contrib
make[3]: Nothing to be done for 'all'.
Making all in admin
make[1]: Nothing to be done for 'all'.
Making all in scripts
make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/scripts'
cat ../../scripts/GMXRC.in | sed 's,@bindir\@,/usr/bin,' > GMXRC
make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/scripts'
make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/scripts'
cat ../../scripts/GMXRC.csh.in | sed 's,@libdir\@,/usr/lib,' | \
sed 's,@bindir\@,/usr/bin,' | \
sed 's,@datadir\@,/usr/share,' | \
sed 's,@mandir\@,/usr/share/man,'  > GMXRC.csh
make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/scripts'
make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/scripts'
cat ../../scripts/GMXRC.zsh.in | sed 's,@libdir\@,/usr/lib,' | \
sed 's,@bindir\@,/usr/bin,' | \
sed 's,@datadir\@,/usr/share,' | \
sed 's,@mandir\@,/usr/share/man,'  > GMXRC.zsh
make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/scripts'
make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/scripts'
cat ../../scripts/GMXRC.bash.in | sed 's,@libdir\@,/usr/lib,' | \
sed 's,@bindir\@,/usr/bin,' | \
sed 's,@datadir\@,/usr/share,' | \
sed 's,@mandir\@,/usr/share/man,'  > GMXRC.bash
make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/scripts'
Making all in share
Making all in top
make[2]: Nothing to be done for 'all'.
Making all in tutor
Making all in nmr1
make[3]: Nothing to be done for 'all'.
Making all in nmr2
make[3]: Nothing to be done for 'all'.
Making all in speptide
make[3]: Nothing to be done for 'all'.
Making all in water
make[3]: Nothing to be done for 'all'.
Making all in gmxdemo
make[3]: Nothing to be done for 'all'.
Making all in methanol
make[3]: Nothing to be done for 'all'.
Making all in mixed
make[3]: Nothing to be done for 'all'.
make[3]: Nothing to be done for 'all-am'.
Making all in template
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/template'
cat ../../../share/template/Template.mak | \
sed 's,@LDFLAGS\@,-L/usr/lib  -lgslcblas ,' | \
sed 's,@LIBS\@,-lmd -lgmx -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath ,' | \
sed 's,@CFLAGS\@,-g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack   -I/usr/include -I/usr/include/gromacs,' | \
sed 's,@CC\@,i586-alt-linux-gcc,' | \
sed 's,@host\@,i586-alt-linux-gnu,' >Makefile.i586-alt-linux-gnu
sed: -e expression #1, char 36: unknown option to `s'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/template'
Making all in html
Making all in .
make[3]: Nothing to be done for 'all-am'.
Making all in images
make[3]: Nothing to be done for 'all'.
Making all in online
make[3]: Nothing to be done for 'all'.
make[2]: Nothing to be done for 'all-am'.
Making all in man
Making all in man1
make[2]: Nothing to be done for 'all'.
make[2]: Nothing to be done for 'all-am'.
make[1]: Nothing to be done for 'all-am'.
+ popd
~/RPM/BUILD/gromacs-4.0.7
+ mkdir double
+ pushd double
~/RPM/BUILD/gromacs-4.0.7/double ~/RPM/BUILD/gromacs-4.0.7
+ buildThis double disable _d
+ ln -s ../configure .
+ CFLAGS='-pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic'
+ export CFLAGS
+ CXXFLAGS='-pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic'
+ export CXXFLAGS
+ FFLAGS='-pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic'
+ export FFLAGS
+ '[' -n ' -march=i586 -mtune=generic' ']'
+ export ASFLAGS
+ export lt_cv_prog_cc_static_works=no
+ lt_cv_prog_cc_static_works=no
+ export lt_cv_deplibs_check_method=pass_all
+ lt_cv_deplibs_check_method=pass_all
+ readlink -e -- ./configure
+ xargs -ri dirname -- '{}'
+ sort -u
+ xargs -rn1 install -pm755 -- /usr/share/gnu-config/config.sub /usr/share/gnu-config/config.guess
+ xargs -ri find '{}' -type f '(' -name config.sub -or -name config.guess ')' -printf '%h/\n'
+ ./configure --build=i586-alt-linux --host=i586-alt-linux --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib --libexecdir=/usr/lib --localstatedir=/var/lib --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info --disable-dependency-tracking --disable-silent-rules --without-included-gettext --disable-rpath --enable-static=no --enable-shared --enable-double --enable-mpi --enable-prefetch-forces --enable-fortran --with-gnu-ld --with-fft=fftw3 --with-x --with-gsl --disable-mpi --program-suffix=_d --with-external-blas=-lopenblas
configure: WARNING: unrecognized options: --without-included-gettext, --disable-rpath, --enable-prefetch-forces
checking build system type... i586-alt-linux-gnu
checking host system type... i586-alt-linux-gnu
checking for a BSD-compatible install... /bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking whether UID '526' is supported by ustar format... yes
checking whether GID '526' is supported by ustar format... yes
checking how to create a ustar tar archive... gnutar
checking for i586-alt-linux-cc... no
checking for i586-alt-linux-icc... no
checking for i586-alt-linux-xlc... no
checking for i586-alt-linux-gcc... i586-alt-linux-gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether i586-alt-linux-gcc accepts -g... yes
checking for i586-alt-linux-gcc option to accept ISO C89... none needed
checking whether i586-alt-linux-gcc understands -c and -o together... yes
checking whether make supports the include directive... yes (GNU style)
checking dependency style of i586-alt-linux-gcc... none
checking for i586-alt-linux-f77... no
checking for i586-alt-linux-ifort... no
checking for i586-alt-linux-xlf... no
checking for i586-alt-linux-xlf77... no
checking for i586-alt-linux-cf77... no
checking for i586-alt-linux-fl32... no
checking for i586-alt-linux-g77... no
checking for i586-alt-linux-fort77... no
checking for i586-alt-linux-f90... no
checking for i586-alt-linux-xlf90... no
checking for i586-alt-linux-pgf77... no
checking for i586-alt-linux-cf77... no
checking for i586-alt-linux-fort... no
checking for i586-alt-linux-fort77... no
checking for i586-alt-linux-pgf90... no
checking for f77... f77
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether f77 accepts -g... yes
checking dependency style of i586-alt-linux-gcc... none
checking how to get verbose linking output from f77... -v
checking for Fortran 77 libraries of f77...  -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
checking for dummy main to link with Fortran 77 libraries... none
checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore
checking how to run the C preprocessor... i586-alt-linux-gcc -E
checking whether i586-alt-linux-gcc accepts -O3... yes
checking whether i586-alt-linux-gcc accepts -funroll-all-loops... yes
******************************************
* Using CFLAGS from environment variable *
******************************************
******************************************
* Using FFLAGS from environment variable *
******************************************
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking whether byte ordering is bigendian... no
checking size of int... 4
checking size of long int... 4
checking size of long long int... 8
checking size of off_t... 4
checking that size_t can hold pointers... yes
checking floating-point format... IEEE754 (little-endian byte and word order)
checking whether ln -s works... yes
checking whether make sets $(MAKE)... (cached) yes
checking for a sed that does not truncate output... /bin/sed
checking for ld used by i586-alt-linux-gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for /usr/bin/ld option to reload object files... -r
checking for BSD-compatible nm... /usr/bin/nm -B
checking how to recognise dependent libraries... (cached) pass_all
checking dlfcn.h usability... yes
checking dlfcn.h presence... yes
checking for dlfcn.h... yes
checking for i586-alt-linux-g++... i586-alt-linux-g++
checking whether we are using the GNU C++ compiler... yes
checking whether i586-alt-linux-g++ accepts -g... yes
checking dependency style of i586-alt-linux-g++... none
checking how to run the C++ preprocessor... i586-alt-linux-g++ -E
checking the maximum length of command line arguments... 32768
checking command to parse /usr/bin/nm -B output from i586-alt-linux-gcc object... ok
checking for objdir... .libs
checking for i586-alt-linux-ar... no
checking for ar... ar
checking for i586-alt-linux-ranlib... no
checking for ranlib... ranlib
checking for i586-alt-linux-strip... no
checking for strip... strip
checking if i586-alt-linux-gcc supports -fno-rtti -fno-exceptions... no
checking for i586-alt-linux-gcc option to produce PIC... -fPIC
checking if i586-alt-linux-gcc PIC flag -fPIC works... yes
checking if i586-alt-linux-gcc static flag -static works... no
checking if i586-alt-linux-gcc supports -c -o file.o... yes
checking whether the i586-alt-linux-gcc linker (/usr/bin/ld) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... cat: '/etc/ld.so.conf.d/*.conf': No such file or directory
GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
configure: creating libtool
appending configuration tag "CXX" to libtool
checking for ld used by i586-alt-linux-g++... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking whether the i586-alt-linux-g++ linker (/usr/bin/ld) supports shared libraries... yes
checking for i586-alt-linux-g++ option to produce PIC... -fPIC
checking if i586-alt-linux-g++ PIC flag -fPIC works... yes
checking if i586-alt-linux-g++ static flag -static works... no
checking if i586-alt-linux-g++ supports -c -o file.o... yes
checking whether the i586-alt-linux-g++ linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... cat: '/etc/ld.so.conf.d/*.conf': No such file or directory
GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
appending configuration tag "F77" to libtool
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking for f77 option to produce PIC... -fPIC
checking if f77 PIC flag -fPIC works... yes
checking if f77 static flag -static works... no
checking if f77 supports -c -o file.o... yes
checking whether the f77 linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... cat: '/etc/ld.so.conf.d/*.conf': No such file or directory
GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... 64
checking for _LARGEFILE_SOURCE value needed for large files... no
checking for sqrt in -lm... yes
checking for fftw3.h... yes
checking for main in -lfftw3... yes
checking rpc/rpc.h usability... yes
checking rpc/rpc.h presence... yes
checking for rpc/rpc.h... yes
checking for rpc/xdr.h... yes
checking for xdr_float in -lnsl... no
checking for working memcmp... yes
checking return type of signal handlers... void
checking for off_t... yes
checking for vprintf... yes
checking for _doprnt... no
checking if malloc debugging is wanted... no
checking for strcasecmp... yes
checking for strdup... yes
checking for bool... no
checking size of int... (cached) 4
checking size of long int... (cached) 4
checking size of long long int... (cached) 8
checking size of off_t... (cached) 4
checking size of void*... 4
checking for X... libraries , headers 
checking for gethostbyname... yes
checking for connect... yes
checking for remove... yes
checking for shmat... yes
checking for IceConnectionNumber in -lICE... yes
checking gsl/gsl_version.h usability... yes
checking gsl/gsl_version.h presence... yes
checking for gsl/gsl_version.h... yes
checking for main in -lgslcblas... yes
checking for main in -lgsl... yes
checking libxml/parser.h usability... no
checking libxml/parser.h presence... no
checking for libxml/parser.h... no
checking limits.h usability... yes
checking limits.h presence... yes
checking for limits.h... yes
checking for strings.h... (cached) yes
checking for unistd.h... (cached) yes
checking for unistd.h... (cached) yes
checking for an ANSI C-conforming const... yes
checking for size_t... yes
checking whether struct tm is in sys/time.h or time.h... time.h
checking for uid_t in sys/types.h... yes
checking for inline... inline
checking whether your compiler can handle assembly files (*.s)... yes
checking whether as fully supports ia32 SSE2... yes
checking whether byte ordering is bigendian... (cached) no
checking if the compiler supports gcc inline assembly... yes
checking if the compiler supports MSVC inline assembly... no
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating src/gmxlib/Makefile
config.status: creating src/gmxlib/gmx_blas/Makefile
config.status: creating src/gmxlib/gmx_lapack/Makefile
config.status: creating src/gmxlib/nonbonded/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_ia32_sse/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_ia32_sse2/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_x86_64_sse/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_ppc_altivec/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_ia64_single/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_ia64_double/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_bluegene/Makefile
config.status: creating include/Makefile
config.status: creating include/types/Makefile
config.status: creating src/mdlib/Makefile
config.status: creating src/kernel/Makefile
config.status: creating src/tools/Makefile
config.status: creating src/ngmx/Makefile
config.status: creating src/contrib/Makefile
config.status: creating scripts/Makefile
config.status: creating admin/Makefile
config.status: creating share/Makefile
config.status: creating share/tutor/Makefile
config.status: creating share/tutor/gmxdemo/Makefile
config.status: creating share/tutor/nmr1/Makefile
config.status: creating share/tutor/nmr2/Makefile
config.status: creating share/tutor/water/Makefile
config.status: creating share/tutor/mixed/Makefile
config.status: creating share/tutor/methanol/Makefile
config.status: creating share/tutor/speptide/Makefile
config.status: creating share/template/Makefile
config.status: creating share/top/Makefile
config.status: creating share/html/Makefile
config.status: creating share/html/images/Makefile
config.status: creating share/html/online/Makefile
config.status: creating man/Makefile
config.status: creating man/man1/Makefile
config.status: creating src/config.h
config.status: executing depfiles commands
configure: WARNING: unrecognized options: --without-included-gettext, --disable-rpath, --enable-prefetch-forces

+ sed -i 's|^hardcode_libdir_flag_spec=.*|hardcode_libdir_flag_spec=""|g' libtool
+ sed -i 's|^runpath_var=LD_RUN_PATH|runpath_var=DIE_RPATH_DIE|g' libtool
+ make -j8
Making all in include
Making all in .
make[2]: Nothing to be done for 'all-am'.
Making all in types
make[2]: Nothing to be done for 'all'.
Making all in src
make  all-recursive
Making all in gmxlib
Making all in nonbonded
Making all in nb_kernel_ia32_sse2
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_ia32_sse2'
/bin/sh ../../../../libtool    --mode=compile i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel030_ia32_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel030_ia32_sse2.s
mkdir .libs
 i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel030_ia32_sse2.s  -fPIC -DPIC -o .libs/nb_kernel030_ia32_sse2.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_ia32_sse2'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_ia32_sse2'
/bin/sh ../../../../libtool    --mode=compile i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel103_ia32_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel103_ia32_sse2.s
 i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel103_ia32_sse2.s  -fPIC -DPIC -o .libs/nb_kernel103_ia32_sse2.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_ia32_sse2'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_ia32_sse2'
/bin/sh ../../../../libtool    --mode=compile i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel101_ia32_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel101_ia32_sse2.s
 i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel101_ia32_sse2.s  -fPIC -DPIC -o .libs/nb_kernel101_ia32_sse2.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_ia32_sse2'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_ia32_sse2'
/bin/sh ../../../../libtool    --mode=compile i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel010_ia32_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel010_ia32_sse2.s
 i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel010_ia32_sse2.s  -fPIC -DPIC -o .libs/nb_kernel010_ia32_sse2.o
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../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel_ia32_sse2.c: In function 'nb_kernel_ia32_sse2_test':
../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel_ia32_sse2.c:207:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
     if(log)
     ^~
../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel_ia32_sse2.c:210:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
  nb_kernel_ia32_sse2_present = TRUE;
  ^~~~~~~~~~~~~~~~~~~~~~~~~~~
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_ia32_sse2'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_ia32_sse2'
/bin/sh ../../../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o libnb_kernel_ia32_sse2.la  nb_kernel010_ia32_sse2.lo nb_kernel030_ia32_sse2.lo nb_kernel100_ia32_sse2.lo nb_kernel101_ia32_sse2.lo nb_kernel102_ia32_sse2.lo nb_kernel103_ia32_sse2.lo nb_kernel104_ia32_sse2.lo nb_kernel110_ia32_sse2.lo nb_kernel111_ia32_sse2.lo nb_kernel112_ia32_sse2.lo nb_kernel113_ia32_sse2.lo nb_kernel114_ia32_sse2.lo nb_kernel130_ia32_sse2.lo nb_kernel131_ia32_sse2.lo nb_kernel132_ia32_sse2.lo nb_kernel133_ia32_sse2.lo nb_kernel134_ia32_sse2.lo nb_kernel200_ia32_sse2.lo nb_kernel201_ia32_sse2.lo nb_kernel202_ia32_sse2.lo nb_kernel203_ia32_sse2.lo nb_kernel204_ia32_sse2.lo nb_kernel210_ia32_sse2.lo nb_kernel211_ia32_sse2.lo nb_kernel212_ia32_sse2.lo nb_kernel213_ia32_sse2.lo nb_kernel214_ia32_sse2.lo nb_kernel230_ia32_sse2.lo nb_kernel231_ia32_sse2.lo nb_kernel232_ia32_sse2.lo nb_kernel233_ia32_sse2.lo nb_kernel234_ia32_sse2.lo nb_kernel300_ia32_sse2.lo nb_kernel301_ia32_sse2.lo nb_kernel302_ia32_sse2.lo nb_kernel303_ia32_sse2.lo nb_kernel304_ia32_sse2.lo nb_kernel310_ia32_sse2.lo nb_kernel311_ia32_sse2.lo nb_kernel312_ia32_sse2.lo nb_kernel313_ia32_sse2.lo nb_kernel314_ia32_sse2.lo nb_kernel330_ia32_sse2.lo nb_kernel331_ia32_sse2.lo nb_kernel332_ia32_sse2.lo nb_kernel333_ia32_sse2.lo nb_kernel334_ia32_sse2.lo nb_kernel400_ia32_sse2.lo nb_kernel410_ia32_sse2.lo nb_kernel430_ia32_sse2.lo nb_kernel_ia32_sse2_test_asm.lo nb_kernel_ia32_sse2.lo  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
ar cru .libs/libnb_kernel_ia32_sse2.a .libs/nb_kernel010_ia32_sse2.o .libs/nb_kernel030_ia32_sse2.o .libs/nb_kernel100_ia32_sse2.o .libs/nb_kernel101_ia32_sse2.o .libs/nb_kernel102_ia32_sse2.o .libs/nb_kernel103_ia32_sse2.o .libs/nb_kernel104_ia32_sse2.o .libs/nb_kernel110_ia32_sse2.o .libs/nb_kernel111_ia32_sse2.o .libs/nb_kernel112_ia32_sse2.o .libs/nb_kernel113_ia32_sse2.o .libs/nb_kernel114_ia32_sse2.o .libs/nb_kernel130_ia32_sse2.o .libs/nb_kernel131_ia32_sse2.o .libs/nb_kernel132_ia32_sse2.o .libs/nb_kernel133_ia32_sse2.o .libs/nb_kernel134_ia32_sse2.o .libs/nb_kernel200_ia32_sse2.o .libs/nb_kernel201_ia32_sse2.o .libs/nb_kernel202_ia32_sse2.o .libs/nb_kernel203_ia32_sse2.o .libs/nb_kernel204_ia32_sse2.o .libs/nb_kernel210_ia32_sse2.o .libs/nb_kernel211_ia32_sse2.o .libs/nb_kernel212_ia32_sse2.o .libs/nb_kernel213_ia32_sse2.o .libs/nb_kernel214_ia32_sse2.o .libs/nb_kernel230_ia32_sse2.o .libs/nb_kernel231_ia32_sse2.o .libs/nb_kernel232_ia32_sse2.o .libs/nb_kernel233_ia32_sse2.o .libs/nb_kernel234_ia32_sse2.o .libs/nb_kernel300_ia32_sse2.o .libs/nb_kernel301_ia32_sse2.o .libs/nb_kernel302_ia32_sse2.o .libs/nb_kernel303_ia32_sse2.o .libs/nb_kernel304_ia32_sse2.o .libs/nb_kernel310_ia32_sse2.o .libs/nb_kernel311_ia32_sse2.o .libs/nb_kernel312_ia32_sse2.o .libs/nb_kernel313_ia32_sse2.o .libs/nb_kernel314_ia32_sse2.o .libs/nb_kernel330_ia32_sse2.o .libs/nb_kernel331_ia32_sse2.o .libs/nb_kernel332_ia32_sse2.o .libs/nb_kernel333_ia32_sse2.o .libs/nb_kernel334_ia32_sse2.o .libs/nb_kernel400_ia32_sse2.o .libs/nb_kernel410_ia32_sse2.o .libs/nb_kernel430_ia32_sse2.o .libs/nb_kernel_ia32_sse2_test_asm.o .libs/nb_kernel_ia32_sse2.o
ranlib .libs/libnb_kernel_ia32_sse2.a
creating libnb_kernel_ia32_sse2.la
(cd .libs && rm -f libnb_kernel_ia32_sse2.la && ln -s ../libnb_kernel_ia32_sse2.la libnb_kernel_ia32_sse2.la)
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_ia32_sse2'
Making all in nb_kernel
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb_common.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb_common.c
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb_outerloop.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb_outerloop.c
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb_innerloop.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb_innerloop.c
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb_interactions.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb_interactions.c
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb_declarations.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb_declarations.c
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb.c
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb_metacode.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb_metacode.c
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -o mknb mknb.o mknb_metacode.o mknb_common.o mknb_declarations.o mknb_outerloop.o mknb_innerloop.o mknb_interactions.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
rm -f kernel-stamp
./mknb -double -software_invsqrt   -fortran
>>> Gromacs nonbonded kernel generator (-h for help)
>>> Generating double precision functions in Fortran77.
>>> Using Gromacs software version of 1/sqrt(x).

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make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make  all-am
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src  -I../../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel.lo ../../../../../src/gmxlib/nonbonded/nb_kernel/nb_kernel.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -I../../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel/nb_kernel.c  -fPIC -DPIC -o .libs/nb_kernel.o
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel101_f.lo nb_kernel101_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel101_f.f  -fPIC -o .libs/nb_kernel101_f.o
nb_kernel101_f.f:153:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel101_f.f:162:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel101_f.f:171:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel101_f.f:374:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel101_f.f:383:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel101_f.f:392:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel101_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:284:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:271:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:280:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:267:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:264:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:282:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:281:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:279:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:270:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:285:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:283:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:274:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:277:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:273:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:275:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:278:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:276:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:288:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel030_f.lo nb_kernel030_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel030_f.f  -fPIC -o .libs/nb_kernel030_f.o
nb_kernel030_f.f:132:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel030_f.f:146:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel030_f.f:310:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel030_f.f:324:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel030_f.f:36:38:

      &                          charge,
                                      1
Warning: Unused dummy argument 'charge' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:37:37:

      &                          facel,
                                     1
Warning: Unused dummy argument 'facel' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:40:34:

      &                          Vc,
                                  1
Warning: Unused dummy argument 'vc' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:220:38:

      &                          charge,
                                      1
Warning: Unused dummy argument 'charge' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:236:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:223:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:232:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:221:37:

      &                          facel,
                                     1
Warning: Unused dummy argument 'facel' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:219:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:216:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:234:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:233:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:231:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:222:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:237:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:235:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:224:34:

      &                          Vc,
                                  1
Warning: Unused dummy argument 'vc' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:240:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel103_f.lo nb_kernel103_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel103_f.f  -fPIC -o .libs/nb_kernel103_f.o
nb_kernel103_f.f:153:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel103_f.f:162:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel103_f.f:171:29:

           fval             = rsq41
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel103_f.f:374:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel103_f.f:383:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel103_f.f:392:29:

           fval             = rsq41
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel103_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:284:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:271:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:280:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:267:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:264:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:282:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:281:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:279:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:270:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:285:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:283:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:274:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:277:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:273:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:275:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:278:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:276:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:288:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel100_f.lo nb_kernel100_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel100_f.f  -fPIC -o .libs/nb_kernel100_f.o
nb_kernel100_f.f:125:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel100_f.f:272:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel100_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:204:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:191:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:200:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:187:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:184:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:202:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:201:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:199:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:190:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:205:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:203:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:194:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:197:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:193:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:195:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:198:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:196:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:208:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel020_f.lo nb_kernel020_f.f
mkdir .libs
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel020_f.f  -fPIC -o .libs/nb_kernel020_f.o
nb_kernel020_f.f:129:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel020_f.f:287:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel020_f.f:36:38:

      &                          charge,
                                      1
Warning: Unused dummy argument 'charge' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:37:37:

      &                          facel,
                                     1
Warning: Unused dummy argument 'facel' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:40:34:

      &                          Vc,
                                  1
Warning: Unused dummy argument 'vc' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:198:38:

      &                          charge,
                                      1
Warning: Unused dummy argument 'charge' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:214:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:201:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:210:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:199:37:

      &                          facel,
                                     1
Warning: Unused dummy argument 'facel' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:197:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:194:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:212:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:211:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:209:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:200:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:215:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:213:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:207:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:202:34:

      &                          Vc,
                                  1
Warning: Unused dummy argument 'vc' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:208:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:218:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel010_f.lo nb_kernel010_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel010_f.f  -fPIC -o .libs/nb_kernel010_f.o
nb_kernel010_f.f:36:38:

      &                          charge,
                                      1
Warning: Unused dummy argument 'charge' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:37:37:

      &                          facel,
                                     1
Warning: Unused dummy argument 'facel' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:40:34:

      &                          Vc,
                                  1
Warning: Unused dummy argument 'vc' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:169:38:

      &                          charge,
                                      1
Warning: Unused dummy argument 'charge' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:185:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:172:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:181:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:170:37:

      &                          facel,
                                     1
Warning: Unused dummy argument 'facel' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:168:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:165:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:183:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:182:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:180:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:171:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:186:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:184:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:178:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:173:34:

      &                          Vc,
                                  1
Warning: Unused dummy argument 'vc' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:179:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:189:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel110_f.lo nb_kernel110_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel110_f.f  -fPIC -o .libs/nb_kernel110_f.o
nb_kernel110_f.f:133:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel110_f.f:297:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel110_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:220:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:207:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:216:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:203:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:200:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:218:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:217:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:215:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:206:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:221:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:219:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:213:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:214:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:224:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel111_f.lo nb_kernel111_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel111_f.f  -fPIC -o .libs/nb_kernel111_f.o
nb_kernel111_f.f:161:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel111_f.f:170:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel111_f.f:179:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel111_f.f:399:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel111_f.f:408:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel111_f.f:417:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel111_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:300:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:287:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:296:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:283:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:280:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:298:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:297:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:295:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:286:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:301:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:299:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:293:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:294:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:304:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel112_f.lo nb_kernel112_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel112_f.f  -fPIC -o .libs/nb_kernel112_f.o
nb_kernel112_f.f:202:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel112_f.f:211:29:

           fval             = rsq12
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel112_f.f:220:29:

           fval             = rsq13
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel112_f.f:229:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel112_f.f:238:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel112_f.f:247:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel112_f.f:256:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel112_f.f:265:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel112_f.f:274:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel112_f.f:616:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel112_f.f:625:29:

           fval             = rsq12
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel112_f.f:634:29:

           fval             = rsq13
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel112_f.f:643:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel112_f.f:652:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel112_f.f:661:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel112_f.f:670:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel112_f.f:679:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel112_f.f:688:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel112_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:476:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:463:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:472:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:459:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:456:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:474:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:473:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:471:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:462:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:477:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:475:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:469:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:470:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:480:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel120_f.lo nb_kernel120_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel120_f.f  -fPIC -o .libs/nb_kernel120_f.o
nb_kernel120_f.f:133:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel120_f.f:299:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel120_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:222:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:209:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:218:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:205:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:202:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:220:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:219:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:217:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:208:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:223:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:221:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:215:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:216:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:226:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel102_f.lo nb_kernel102_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel102_f.f  -fPIC -o .libs/nb_kernel102_f.o
nb_kernel102_f.f:193:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel102_f.f:202:29:

           fval             = rsq12
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel102_f.f:211:29:

           fval             = rsq13
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel102_f.f:220:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel102_f.f:229:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel102_f.f:238:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel102_f.f:247:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel102_f.f:256:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel102_f.f:265:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel102_f.f:592:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel102_f.f:601:29:

           fval             = rsq12
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel102_f.f:610:29:

           fval             = rsq13
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel102_f.f:619:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel102_f.f:628:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel102_f.f:637:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel102_f.f:646:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel102_f.f:655:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel102_f.f:664:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel102_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:462:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:449:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:458:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:445:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:442:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:460:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:459:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:457:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:448:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:463:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:461:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:452:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:455:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:451:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:453:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:456:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:454:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:466:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel113_f.lo nb_kernel113_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel113_f.f  -fPIC -o .libs/nb_kernel113_f.o
nb_kernel113_f.f:174:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel113_f.f:183:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel113_f.f:192:29:

           fval             = rsq41
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel113_f.f:435:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel113_f.f:444:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel113_f.f:453:29:

           fval             = rsq41
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel113_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:326:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:313:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:322:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:309:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:306:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:324:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:323:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:321:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:312:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:327:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:325:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:319:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:320:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:330:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel104_f.lo nb_kernel104_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel104_f.f  -fPIC -o .libs/nb_kernel104_f.o
nb_kernel104_f.f:193:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel104_f.f:202:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel104_f.f:211:29:

           fval             = rsq24
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel104_f.f:220:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel104_f.f:229:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel104_f.f:238:29:

           fval             = rsq34
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel104_f.f:247:29:

           fval             = rsq42
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel104_f.f:256:29:

           fval             = rsq43
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel104_f.f:265:29:

           fval             = rsq44
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel104_f.f:592:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel104_f.f:601:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel104_f.f:610:29:

           fval             = rsq24
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel104_f.f:619:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel104_f.f:628:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel104_f.f:637:29:

           fval             = rsq34
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel104_f.f:646:29:

           fval             = rsq42
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel104_f.f:655:29:

           fval             = rsq43
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel104_f.f:664:29:

           fval             = rsq44
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel104_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:462:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:449:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:458:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:445:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:442:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:460:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:459:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:457:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:448:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:463:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:461:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:452:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:455:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:451:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:453:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:456:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:454:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:466:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel123_f.lo nb_kernel123_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel123_f.f  -fPIC -o .libs/nb_kernel123_f.o
nb_kernel123_f.f:173:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel123_f.f:182:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel123_f.f:191:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel123_f.f:200:29:

           fval             = rsq41
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel123_f.f:445:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel123_f.f:454:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel123_f.f:463:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel123_f.f:472:29:

           fval             = rsq41
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel123_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:337:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:324:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:333:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:320:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:317:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:335:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:334:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:332:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:323:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:338:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:336:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:330:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:331:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:341:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel121_f.lo nb_kernel121_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel121_f.f  -fPIC -o .libs/nb_kernel121_f.o
nb_kernel121_f.f:161:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel121_f.f:170:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel121_f.f:179:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel121_f.f:401:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel121_f.f:410:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel121_f.f:419:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel121_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:302:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:289:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:298:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:285:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:282:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:300:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:299:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:297:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:288:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:303:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:301:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:295:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:296:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:306:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel122_f.lo nb_kernel122_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel122_f.f  -fPIC -o .libs/nb_kernel122_f.o
nb_kernel122_f.f:203:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel122_f.f:212:29:

           fval             = rsq12
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel122_f.f:221:29:

           fval             = rsq13
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel122_f.f:230:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel122_f.f:239:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel122_f.f:248:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel122_f.f:257:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel122_f.f:266:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel122_f.f:275:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel122_f.f:619:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel122_f.f:628:29:

           fval             = rsq12
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel122_f.f:637:29:

           fval             = rsq13
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel122_f.f:646:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel122_f.f:655:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel122_f.f:664:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel122_f.f:673:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel122_f.f:682:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel122_f.f:691:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel122_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:478:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:465:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:474:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:461:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:458:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:476:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:475:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:473:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:464:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:479:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:477:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:471:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:472:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:482:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel131_f.lo nb_kernel131_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel131_f.f  -fPIC -o .libs/nb_kernel131_f.o
nb_kernel131_f.f:165:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel131_f.f:174:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel131_f.f:183:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel131_f.f:202:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel131_f.f:427:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel131_f.f:436:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel131_f.f:445:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel131_f.f:463:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel131_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:327:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:314:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:323:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:310:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:307:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:325:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:324:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:322:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:313:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:328:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:326:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:331:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel114_f.lo nb_kernel114_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel114_f.f  -fPIC -o .libs/nb_kernel114_f.o
nb_kernel114_f.f:219:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel114_f.f:228:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel114_f.f:237:29:

           fval             = rsq24
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel114_f.f:246:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel114_f.f:255:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel114_f.f:264:29:

           fval             = rsq34
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel114_f.f:273:29:

           fval             = rsq42
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel114_f.f:282:29:

           fval             = rsq43
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel114_f.f:291:29:

           fval             = rsq44
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel114_f.f:660:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel114_f.f:669:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel114_f.f:678:29:

           fval             = rsq24
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel114_f.f:687:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel114_f.f:696:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel114_f.f:705:29:

           fval             = rsq34
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel114_f.f:714:29:

           fval             = rsq42
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel114_f.f:723:29:

           fval             = rsq43
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel114_f.f:732:29:

           fval             = rsq44
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel114_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:506:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:493:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:502:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:489:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:486:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:504:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:503:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:501:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:492:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:507:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:505:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:499:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:500:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:510:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel130_f.lo nb_kernel130_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel130_f.f  -fPIC -o .libs/nb_kernel130_f.o
nb_kernel130_f.f:137:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel130_f.f:155:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel130_f.f:325:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel130_f.f:342:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel130_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:247:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:234:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:243:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:230:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:227:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:245:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:244:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:242:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:233:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:248:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:246:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:251:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel200_f.lo nb_kernel200_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel200_f.f  -fPIC -o .libs/nb_kernel200_f.o
nb_kernel200_f.f:126:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel200_f.f:275:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel200_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:206:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:202:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:189:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:186:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:204:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:203:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:201:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:207:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:205:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:196:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:199:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:195:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:197:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:200:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:198:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:210:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel124_f.lo nb_kernel124_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel124_f.f  -fPIC -o .libs/nb_kernel124_f.o
nb_kernel124_f.f:219:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel124_f.f:228:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel124_f.f:237:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel124_f.f:246:29:

           fval             = rsq24
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel124_f.f:255:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel124_f.f:264:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel124_f.f:273:29:

           fval             = rsq34
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel124_f.f:282:29:

           fval             = rsq42
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel124_f.f:291:29:

           fval             = rsq43
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel124_f.f:300:29:

           fval             = rsq44
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel124_f.f:671:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel124_f.f:680:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel124_f.f:689:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel124_f.f:698:29:

           fval             = rsq24
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel124_f.f:707:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel124_f.f:716:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel124_f.f:725:29:

           fval             = rsq34
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel124_f.f:734:29:

           fval             = rsq42
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel124_f.f:743:29:

           fval             = rsq43
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel124_f.f:752:29:

           fval             = rsq44
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel124_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:517:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:504:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:513:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:500:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:497:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:515:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:514:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:512:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:503:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:518:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:516:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:510:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:511:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:521:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel201_f.lo nb_kernel201_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel201_f.f  -fPIC -o .libs/nb_kernel201_f.o
nb_kernel201_f.f:154:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel201_f.f:163:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel201_f.f:172:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel201_f.f:379:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel201_f.f:388:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel201_f.f:397:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel201_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:288:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:284:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:271:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:268:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:286:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:285:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:283:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:289:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:287:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:278:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:281:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:277:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:279:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:282:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:280:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:292:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel202_f.lo nb_kernel202_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel202_f.f  -fPIC -o .libs/nb_kernel202_f.o
nb_kernel202_f.f:194:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel202_f.f:203:29:

           fval             = rsq12
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel202_f.f:212:29:

           fval             = rsq13
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel202_f.f:221:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel202_f.f:230:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel202_f.f:239:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel202_f.f:248:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel202_f.f:257:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel202_f.f:266:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel202_f.f:603:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel202_f.f:612:29:

           fval             = rsq12
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel202_f.f:621:29:

           fval             = rsq13
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel202_f.f:630:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel202_f.f:639:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel202_f.f:648:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel202_f.f:657:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel202_f.f:666:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel202_f.f:675:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel202_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:472:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:468:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:455:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:452:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:470:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:469:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:467:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:473:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:471:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:462:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:465:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:461:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:463:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:466:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:464:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:476:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel134_f.lo nb_kernel134_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel134_f.f  -fPIC -o .libs/nb_kernel134_f.o
nb_kernel134_f.f:222:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel134_f.f:231:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel134_f.f:240:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel134_f.f:249:29:

           fval             = rsq24
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel134_f.f:258:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel134_f.f:267:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel134_f.f:276:29:

           fval             = rsq34
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel134_f.f:285:29:

           fval             = rsq42
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel134_f.f:294:29:

           fval             = rsq43
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel134_f.f:303:29:

           fval             = rsq44
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel134_f.f:314:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel134_f.f:694:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel134_f.f:703:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel134_f.f:712:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel134_f.f:721:29:

           fval             = rsq24
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel134_f.f:730:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel134_f.f:739:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel134_f.f:748:29:

           fval             = rsq34
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel134_f.f:757:29:

           fval             = rsq42
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel134_f.f:766:29:

           fval             = rsq43
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel134_f.f:775:29:

           fval             = rsq44
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel134_f.f:786:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel134_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:540:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:527:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:536:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:523:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:520:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:538:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:537:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:535:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:526:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:541:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:539:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:544:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel210_f.lo nb_kernel210_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel210_f.f  -fPIC -o .libs/nb_kernel210_f.o
nb_kernel210_f.f:134:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel210_f.f:301:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel210_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:223:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:219:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:206:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:203:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:221:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:220:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:218:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:224:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:222:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:216:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:217:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:227:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel132_f.lo nb_kernel132_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel132_f.f  -fPIC -o .libs/nb_kernel132_f.o
nb_kernel132_f.f:206:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel132_f.f:215:29:

           fval             = rsq12
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel132_f.f:224:29:

           fval             = rsq13
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel132_f.f:233:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel132_f.f:242:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel132_f.f:251:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel132_f.f:260:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel132_f.f:269:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel132_f.f:278:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel132_f.f:293:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel132_f.f:644:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel132_f.f:653:29:

           fval             = rsq12
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel132_f.f:662:29:

           fval             = rsq13
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel132_f.f:671:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel132_f.f:680:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel132_f.f:689:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel132_f.f:698:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel132_f.f:707:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel132_f.f:716:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel132_f.f:730:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel132_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:503:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:490:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:499:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:486:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:483:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:501:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:500:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:498:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:489:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:504:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:502:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:507:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel133_f.lo nb_kernel133_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel133_f.f  -fPIC -o .libs/nb_kernel133_f.o
nb_kernel133_f.f:177:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel133_f.f:186:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel133_f.f:195:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel133_f.f:204:29:

           fval             = rsq41
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel133_f.f:218:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel133_f.f:469:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel133_f.f:478:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel133_f.f:487:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel133_f.f:496:29:

           fval             = rsq41
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel133_f.f:510:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel133_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:360:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:347:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:356:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:343:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:340:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:358:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:357:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:355:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:346:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:361:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:359:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:364:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel204_f.lo nb_kernel204_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel204_f.f  -fPIC -o .libs/nb_kernel204_f.o
nb_kernel204_f.f:194:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel204_f.f:203:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel204_f.f:212:29:

           fval             = rsq24
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel204_f.f:221:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel204_f.f:230:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel204_f.f:239:29:

           fval             = rsq34
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel204_f.f:248:29:

           fval             = rsq42
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel204_f.f:257:29:

           fval             = rsq43
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel204_f.f:266:29:

           fval             = rsq44
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel204_f.f:603:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel204_f.f:612:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel204_f.f:621:29:

           fval             = rsq24
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel204_f.f:630:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel204_f.f:639:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel204_f.f:648:29:

           fval             = rsq34
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel204_f.f:657:29:

           fval             = rsq42
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel204_f.f:666:29:

           fval             = rsq43
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel204_f.f:675:29:

           fval             = rsq44
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel204_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:472:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:468:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:455:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:452:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:470:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:469:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:467:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:473:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:471:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:462:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:465:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:461:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:463:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:466:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:464:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:476:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel203_f.lo nb_kernel203_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel203_f.f  -fPIC -o .libs/nb_kernel203_f.o
nb_kernel203_f.f:154:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel203_f.f:163:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel203_f.f:172:29:

           fval             = rsq41
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel203_f.f:379:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel203_f.f:388:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel203_f.f:397:29:

           fval             = rsq41
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel203_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:288:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:284:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:271:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:268:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:286:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:285:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:283:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:289:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:287:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:278:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:281:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:277:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:279:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:282:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:280:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:292:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel213_f.lo nb_kernel213_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel213_f.f  -fPIC -o .libs/nb_kernel213_f.o
nb_kernel213_f.f:175:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel213_f.f:184:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel213_f.f:193:29:

           fval             = rsq41
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel213_f.f:440:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel213_f.f:449:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel213_f.f:458:29:

           fval             = rsq41
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel213_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:330:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:326:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:313:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:310:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:328:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:327:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:325:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:331:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:329:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:323:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:324:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:334:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel211_f.lo nb_kernel211_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel211_f.f  -fPIC -o .libs/nb_kernel211_f.o
nb_kernel211_f.f:162:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel211_f.f:171:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel211_f.f:180:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel211_f.f:405:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel211_f.f:414:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel211_f.f:423:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel211_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:305:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:301:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:288:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:285:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:303:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:302:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:300:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:306:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:304:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:298:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:299:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:309:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel212_f.lo nb_kernel212_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel212_f.f  -fPIC -o .libs/nb_kernel212_f.o
nb_kernel212_f.f:203:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel212_f.f:212:29:

           fval             = rsq12
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel212_f.f:221:29:

           fval             = rsq13
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel212_f.f:230:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel212_f.f:239:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel212_f.f:248:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel212_f.f:257:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel212_f.f:266:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel212_f.f:275:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel212_f.f:628:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel212_f.f:637:29:

           fval             = rsq12
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel212_f.f:646:29:

           fval             = rsq13
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel212_f.f:655:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel212_f.f:664:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel212_f.f:673:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel212_f.f:682:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel212_f.f:691:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel212_f.f:700:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel212_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:487:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:483:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:470:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:467:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:485:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:484:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:482:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:488:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:486:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:480:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:481:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:491:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel223_f.lo nb_kernel223_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel223_f.f  -fPIC -o .libs/nb_kernel223_f.o
nb_kernel223_f.f:174:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel223_f.f:183:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel223_f.f:192:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel223_f.f:201:29:

           fval             = rsq41
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel223_f.f:450:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel223_f.f:459:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel223_f.f:468:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel223_f.f:477:29:

           fval             = rsq41
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel223_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:341:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:337:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:324:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:321:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:339:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:338:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:336:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:342:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:340:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:334:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:335:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:345:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel222_f.lo nb_kernel222_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel222_f.f  -fPIC -o .libs/nb_kernel222_f.o
nb_kernel222_f.f:204:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel222_f.f:213:29:

           fval             = rsq12
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel222_f.f:222:29:

           fval             = rsq13
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel222_f.f:231:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel222_f.f:240:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel222_f.f:249:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel222_f.f:258:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel222_f.f:267:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel222_f.f:276:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel222_f.f:631:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel222_f.f:640:29:

           fval             = rsq12
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel222_f.f:649:29:

           fval             = rsq13
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel222_f.f:658:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel222_f.f:667:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel222_f.f:676:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel222_f.f:685:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel222_f.f:694:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel222_f.f:703:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel222_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:489:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:485:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:472:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:469:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:487:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:486:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:484:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:490:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:488:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:482:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:483:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:493:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel220_f.lo nb_kernel220_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel220_f.f  -fPIC -o .libs/nb_kernel220_f.o
nb_kernel220_f.f:134:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel220_f.f:303:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel220_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:225:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:221:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:208:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:205:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:223:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:222:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:220:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:226:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:224:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:218:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:219:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:229:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel230_f.lo nb_kernel230_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel230_f.f  -fPIC -o .libs/nb_kernel230_f.o
nb_kernel230_f.f:138:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel230_f.f:157:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel230_f.f:328:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel230_f.f:346:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel230_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:249:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:245:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:232:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:229:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:247:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:246:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:244:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:250:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:248:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:253:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel221_f.lo nb_kernel221_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel221_f.f  -fPIC -o .libs/nb_kernel221_f.o
nb_kernel221_f.f:162:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel221_f.f:171:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel221_f.f:180:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel221_f.f:407:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel221_f.f:416:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel221_f.f:425:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel221_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:307:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:303:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:290:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:287:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:305:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:304:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:302:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:308:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:306:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:300:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:301:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:311:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel301_f.lo nb_kernel301_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel301_f.f  -fPIC -o .libs/nb_kernel301_f.o
nb_kernel301_f.f:157:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel301_f.f:166:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel301_f.f:175:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel301_f.f:188:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel301_f.f:215:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel301_f.f:241:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel301_f.f:420:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel301_f.f:429:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel301_f.f:438:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel301_f.f:451:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel301_f.f:466:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel301_f.f:480:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel301_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:327:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:314:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:323:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:310:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:307:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:325:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:324:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:322:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:313:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:328:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:326:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:317:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:316:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:318:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:319:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:331:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel231_f.lo nb_kernel231_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel231_f.f  -fPIC -o .libs/nb_kernel231_f.o
nb_kernel231_f.f:166:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel231_f.f:175:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel231_f.f:184:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel231_f.f:204:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel231_f.f:432:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel231_f.f:441:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel231_f.f:450:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel231_f.f:469:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel231_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:331:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:327:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:314:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:311:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:329:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:328:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:326:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:332:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:330:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:335:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel300_f.lo nb_kernel300_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel300_f.f  -fPIC -o .libs/nb_kernel300_f.o
nb_kernel300_f.f:129:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel300_f.f:141:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel300_f.f:292:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel300_f.f:304:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel300_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:221:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:208:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:217:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:204:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:201:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:219:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:218:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:216:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:207:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:222:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:220:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:211:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:210:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:212:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:213:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:225:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel214_f.lo nb_kernel214_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel214_f.f  -fPIC -o .libs/nb_kernel214_f.o
nb_kernel214_f.f:220:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel214_f.f:229:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel214_f.f:238:29:

           fval             = rsq24
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel214_f.f:247:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel214_f.f:256:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel214_f.f:265:29:

           fval             = rsq34
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel214_f.f:274:29:

           fval             = rsq42
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel214_f.f:283:29:

           fval             = rsq43
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel214_f.f:292:29:

           fval             = rsq44
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel214_f.f:671:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel214_f.f:680:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel214_f.f:689:29:

           fval             = rsq24
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel214_f.f:698:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel214_f.f:707:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel214_f.f:716:29:

           fval             = rsq34
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel214_f.f:725:29:

           fval             = rsq42
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel214_f.f:734:29:

           fval             = rsq43
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel214_f.f:743:29:

           fval             = rsq44
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel214_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:516:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:512:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:499:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:496:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:514:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:513:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:511:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:517:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:515:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:509:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:510:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:520:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel233_f.lo nb_kernel233_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel233_f.f  -fPIC -o .libs/nb_kernel233_f.o
nb_kernel233_f.f:178:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel233_f.f:187:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel233_f.f:196:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel233_f.f:205:29:

           fval             = rsq41
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel233_f.f:219:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel233_f.f:474:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel233_f.f:483:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel233_f.f:492:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel233_f.f:501:29:

           fval             = rsq41
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel233_f.f:515:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel233_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:364:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:360:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:347:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:344:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:362:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:361:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:359:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:365:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:363:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:368:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel234_f.lo nb_kernel234_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel234_f.f  -fPIC -o .libs/nb_kernel234_f.o
nb_kernel234_f.f:223:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel234_f.f:232:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel234_f.f:241:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel234_f.f:250:29:

           fval             = rsq24
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel234_f.f:259:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel234_f.f:268:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel234_f.f:277:29:

           fval             = rsq34
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel234_f.f:286:29:

           fval             = rsq42
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel234_f.f:295:29:

           fval             = rsq43
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel234_f.f:304:29:

           fval             = rsq44
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel234_f.f:315:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel234_f.f:705:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel234_f.f:714:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel234_f.f:723:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel234_f.f:732:29:

           fval             = rsq24
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel234_f.f:741:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel234_f.f:750:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel234_f.f:759:29:

           fval             = rsq34
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel234_f.f:768:29:

           fval             = rsq42
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel234_f.f:777:29:

           fval             = rsq43
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel234_f.f:786:29:

           fval             = rsq44
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel234_f.f:797:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel234_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:550:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:546:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:533:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:530:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:548:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:547:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:545:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:551:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:549:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:554:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel224_f.lo nb_kernel224_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel224_f.f  -fPIC -o .libs/nb_kernel224_f.o
nb_kernel224_f.f:220:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel224_f.f:229:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel224_f.f:238:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel224_f.f:247:29:

           fval             = rsq24
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel224_f.f:256:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel224_f.f:265:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel224_f.f:274:29:

           fval             = rsq34
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel224_f.f:283:29:

           fval             = rsq42
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel224_f.f:292:29:

           fval             = rsq43
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel224_f.f:301:29:

           fval             = rsq44
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel224_f.f:682:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel224_f.f:691:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel224_f.f:700:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel224_f.f:709:29:

           fval             = rsq24
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel224_f.f:718:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel224_f.f:727:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel224_f.f:736:29:

           fval             = rsq34
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel224_f.f:745:29:

           fval             = rsq42
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel224_f.f:754:29:

           fval             = rsq43
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel224_f.f:763:29:

           fval             = rsq44
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel224_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:527:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:523:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:510:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:507:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:525:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:524:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:522:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:528:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:526:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:520:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:521:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:531:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel303_f.lo nb_kernel303_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel303_f.f  -fPIC -o .libs/nb_kernel303_f.o
nb_kernel303_f.f:157:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel303_f.f:166:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel303_f.f:175:29:

           fval             = rsq41
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel303_f.f:188:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel303_f.f:214:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel303_f.f:241:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel303_f.f:420:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel303_f.f:429:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel303_f.f:438:29:

           fval             = rsq41
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel303_f.f:451:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel303_f.f:465:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel303_f.f:480:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel303_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:327:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:314:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:323:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:310:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:307:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:325:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:324:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:322:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:313:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:328:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:326:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:317:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:316:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:318:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:319:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:331:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel232_f.lo nb_kernel232_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel232_f.f  -fPIC -o .libs/nb_kernel232_f.o
nb_kernel232_f.f:207:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel232_f.f:216:29:

           fval             = rsq12
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel232_f.f:225:29:

           fval             = rsq13
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel232_f.f:234:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel232_f.f:243:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel232_f.f:252:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel232_f.f:261:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel232_f.f:270:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel232_f.f:279:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel232_f.f:295:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel232_f.f:655:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel232_f.f:664:29:

           fval             = rsq12
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel232_f.f:673:29:

           fval             = rsq13
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel232_f.f:682:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel232_f.f:691:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel232_f.f:700:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel232_f.f:709:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel232_f.f:718:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel232_f.f:727:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel232_f.f:742:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel232_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:513:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:509:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:496:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:493:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:511:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:510:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:508:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:514:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:512:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:517:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel302_f.lo nb_kernel302_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel302_f.f  -fPIC -o .libs/nb_kernel302_f.o
nb_kernel302_f.f:197:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel302_f.f:206:29:

           fval             = rsq12
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel302_f.f:215:29:

           fval             = rsq13
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel302_f.f:224:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel302_f.f:233:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel302_f.f:242:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel302_f.f:251:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel302_f.f:260:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel302_f.f:269:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel302_f.f:281:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:308:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:335:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:362:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:389:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:416:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:443:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:470:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:497:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:716:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel302_f.f:725:29:

           fval             = rsq12
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel302_f.f:734:29:

           fval             = rsq13
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel302_f.f:743:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel302_f.f:752:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel302_f.f:761:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel302_f.f:770:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel302_f.f:779:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel302_f.f:788:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel302_f.f:800:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:815:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:830:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:845:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:860:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:875:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:890:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:905:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:920:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:583:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:570:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:579:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:566:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:563:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:581:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:580:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:578:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:569:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:584:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:582:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:573:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:572:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:574:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:575:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:587:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel310_f.lo nb_kernel310_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel310_f.f  -fPIC -o .libs/nb_kernel310_f.o
nb_kernel310_f.f:138:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel310_f.f:154:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel310_f.f:320:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel310_f.f:336:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel310_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:240:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:227:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:236:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:223:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:220:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:238:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:237:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:235:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:226:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:241:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:239:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:244:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel311_f.lo nb_kernel311_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel311_f.f  -fPIC -o .libs/nb_kernel311_f.o
nb_kernel311_f.f:166:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel311_f.f:175:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel311_f.f:184:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel311_f.f:201:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel311_f.f:233:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel311_f.f:259:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel311_f.f:448:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel311_f.f:457:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel311_f.f:466:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel311_f.f:483:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel311_f.f:502:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel311_f.f:516:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel311_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:346:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:333:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:342:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:329:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:326:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:344:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:343:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:341:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:332:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:347:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:345:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:350:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel320_f.lo nb_kernel320_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel320_f.f  -fPIC -o .libs/nb_kernel320_f.o
nb_kernel320_f.f:138:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel320_f.f:155:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel320_f.f:322:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel320_f.f:339:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel320_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:242:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:229:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:238:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:225:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:222:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:240:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:239:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:237:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:228:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:243:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:241:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:246:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel313_f.lo nb_kernel313_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel313_f.f  -fPIC -o .libs/nb_kernel313_f.o
nb_kernel313_f.f:179:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel313_f.f:188:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel313_f.f:197:29:

           fval             = rsq41
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel313_f.f:227:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel313_f.f:253:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel313_f.f:280:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel313_f.f:482:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel313_f.f:491:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel313_f.f:500:29:

           fval             = rsq41
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel313_f.f:520:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel313_f.f:534:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel313_f.f:549:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel313_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:370:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:357:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:366:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:353:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:350:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:368:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:367:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:365:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:356:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:371:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:369:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:374:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel304_f.lo nb_kernel304_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel304_f.f  -fPIC -o .libs/nb_kernel304_f.o
nb_kernel304_f.f:197:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel304_f.f:206:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel304_f.f:215:29:

           fval             = rsq24
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel304_f.f:224:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel304_f.f:233:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel304_f.f:242:29:

           fval             = rsq34
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel304_f.f:251:29:

           fval             = rsq42
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel304_f.f:260:29:

           fval             = rsq43
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel304_f.f:269:29:

           fval             = rsq44
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel304_f.f:281:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:308:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:335:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:362:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:389:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:416:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:443:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:470:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:497:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:716:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel304_f.f:725:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel304_f.f:734:29:

           fval             = rsq24
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel304_f.f:743:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel304_f.f:752:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel304_f.f:761:29:

           fval             = rsq34
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel304_f.f:770:29:

           fval             = rsq42
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel304_f.f:779:29:

           fval             = rsq43
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel304_f.f:788:29:

           fval             = rsq44
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel304_f.f:800:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:815:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:830:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:845:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:860:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:875:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:890:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:905:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:920:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:583:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:570:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:579:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:566:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:563:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:581:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:580:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:578:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:569:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:584:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:582:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:573:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:572:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:574:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:575:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:587:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel322_f.lo nb_kernel322_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel322_f.f  -fPIC -o .libs/nb_kernel322_f.o
nb_kernel322_f.f:208:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel322_f.f:217:29:

           fval             = rsq12
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel322_f.f:226:29:

           fval             = rsq13
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel322_f.f:235:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel322_f.f:244:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel322_f.f:253:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel322_f.f:262:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel322_f.f:271:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel322_f.f:280:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel322_f.f:293:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:326:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:353:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:380:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:407:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:434:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:461:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:488:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:515:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:746:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel322_f.f:755:29:

           fval             = rsq12
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel322_f.f:764:29:

           fval             = rsq13
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel322_f.f:773:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel322_f.f:782:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel322_f.f:791:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel322_f.f:800:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel322_f.f:809:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel322_f.f:818:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel322_f.f:831:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:851:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:866:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:881:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:896:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:911:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:926:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:941:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:956:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:602:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:589:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:598:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:585:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:582:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:600:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:599:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:597:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:588:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:603:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:601:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:606:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel324_f.lo nb_kernel324_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel324_f.f  -fPIC -o .libs/nb_kernel324_f.o
nb_kernel324_f.f:224:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel324_f.f:233:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel324_f.f:242:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel324_f.f:251:29:

           fval             = rsq24
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel324_f.f:260:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel324_f.f:269:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel324_f.f:278:29:

           fval             = rsq34
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel324_f.f:287:29:

           fval             = rsq42
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel324_f.f:296:29:

           fval             = rsq43
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel324_f.f:305:29:

           fval             = rsq44
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel324_f.f:333:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:360:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:387:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:414:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:441:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:468:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:495:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:522:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:549:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:796:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel324_f.f:805:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel324_f.f:814:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel324_f.f:823:29:

           fval             = rsq24
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel324_f.f:832:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel324_f.f:841:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel324_f.f:850:29:

           fval             = rsq34
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel324_f.f:859:29:

           fval             = rsq42
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel324_f.f:868:29:

           fval             = rsq43
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel324_f.f:877:29:

           fval             = rsq44
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel324_f.f:895:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:910:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:925:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:940:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:955:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:970:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:985:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:1000:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:1015:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:639:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:626:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:635:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:622:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:619:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:637:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:636:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:634:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:625:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:640:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:638:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:643:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel330_f.lo nb_kernel330_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel330_f.f  -fPIC -o .libs/nb_kernel330_f.o
nb_kernel330_f.f:137:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel330_f.f:152:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel330_f.f:332:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel330_f.f:347:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel330_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:254:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:241:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:250:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:237:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:234:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:252:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:251:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:249:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:240:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:255:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:253:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:258:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel321_f.lo nb_kernel321_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel321_f.f  -fPIC -o .libs/nb_kernel321_f.o
nb_kernel321_f.f:166:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel321_f.f:175:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel321_f.f:184:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel321_f.f:202:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel321_f.f:235:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel321_f.f:261:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel321_f.f:450:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel321_f.f:459:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel321_f.f:468:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel321_f.f:486:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel321_f.f:506:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel321_f.f:520:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel321_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:348:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:335:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:344:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:331:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:328:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:346:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:345:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:343:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:334:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:349:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:347:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:352:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel332_f.lo nb_kernel332_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel332_f.f  -fPIC -o .libs/nb_kernel332_f.o
nb_kernel332_f.f:206:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel332_f.f:215:29:

           fval             = rsq12
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel332_f.f:224:29:

           fval             = rsq13
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel332_f.f:233:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel332_f.f:242:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel332_f.f:251:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel332_f.f:260:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel332_f.f:269:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel332_f.f:278:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel332_f.f:290:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:338:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:365:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:392:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:419:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:446:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:473:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:500:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:527:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:755:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel332_f.f:764:29:

           fval             = rsq12
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel332_f.f:773:29:

           fval             = rsq13
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel332_f.f:782:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel332_f.f:791:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel332_f.f:800:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel332_f.f:809:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel332_f.f:818:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel332_f.f:827:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel332_f.f:839:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:871:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:886:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:901:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:916:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:931:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:946:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:961:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:976:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:614:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:601:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:610:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:597:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:594:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:612:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:611:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:609:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:600:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:615:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:613:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:618:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel333_f.lo nb_kernel333_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel333_f.f  -fPIC -o .libs/nb_kernel333_f.o
nb_kernel333_f.f:177:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel333_f.f:186:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel333_f.f:195:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel333_f.f:204:29:

           fval             = rsq41
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel333_f.f:218:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel333_f.f:257:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel333_f.f:283:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel333_f.f:310:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel333_f.f:509:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel333_f.f:518:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel333_f.f:527:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel333_f.f:536:29:

           fval             = rsq41
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel333_f.f:550:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel333_f.f:575:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel333_f.f:589:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel333_f.f:604:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel333_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:400:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:387:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:396:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:383:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:380:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:398:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:397:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:395:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:386:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:401:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:399:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:404:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel400_f.lo nb_kernel400_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel400_f.f  -fPIC -o .libs/nb_kernel400_f.o
nb_kernel400_f.f:133:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel400_f.f:149:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel400_f.f:306:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel400_f.f:321:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel400_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:233:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:220:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:229:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:216:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:213:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:219:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:234:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:232:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:223:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:226:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:222:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:224:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:227:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:225:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:237:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel312_f.lo nb_kernel312_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel312_f.f  -fPIC -o .libs/nb_kernel312_f.o
nb_kernel312_f.f:207:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel312_f.f:216:29:

           fval             = rsq12
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel312_f.f:225:29:

           fval             = rsq13
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel312_f.f:234:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel312_f.f:243:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel312_f.f:252:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel312_f.f:261:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel312_f.f:270:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel312_f.f:279:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel312_f.f:292:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:324:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:351:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:378:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:405:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:432:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:459:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:486:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:513:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:743:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel312_f.f:752:29:

           fval             = rsq12
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel312_f.f:761:29:

           fval             = rsq13
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel312_f.f:770:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel312_f.f:779:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel312_f.f:788:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel312_f.f:797:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel312_f.f:806:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel312_f.f:815:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel312_f.f:828:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:847:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:862:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:877:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:892:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:907:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:922:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:937:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:952:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:600:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:587:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:596:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:583:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:580:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:598:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:597:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:595:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:586:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:601:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:599:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:604:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel420_f.lo nb_kernel420_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel420_f.f  -fPIC -o .libs/nb_kernel420_f.o
nb_kernel420_f.f:142:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel420_f.f:163:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel420_f.f:336:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel420_f.f:356:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel420_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:254:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:241:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:250:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:237:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:234:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:240:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:255:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:253:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:247:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:248:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:258:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src  -I../../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel_f77sync.lo ../../../../../src/gmxlib/nonbonded/nb_kernel/nb_kernel_f77sync.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -I../../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel/nb_kernel_f77sync.c  -fPIC -DPIC -o .libs/nb_kernel_f77sync.o
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel323_f.lo nb_kernel323_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel323_f.f  -fPIC -o .libs/nb_kernel323_f.o
nb_kernel323_f.f:178:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel323_f.f:187:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel323_f.f:196:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel323_f.f:205:29:

           fval             = rsq41
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel323_f.f:238:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel323_f.f:264:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel323_f.f:291:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel323_f.f:492:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel323_f.f:501:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel323_f.f:510:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel323_f.f:519:29:

           fval             = rsq41
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel323_f.f:542:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel323_f.f:556:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel323_f.f:571:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel323_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:381:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:368:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:377:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:364:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:361:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:379:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:378:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:376:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:367:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:382:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:380:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:385:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel430_f.lo nb_kernel430_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel430_f.f  -fPIC -o .libs/nb_kernel430_f.o
nb_kernel430_f.f:141:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel430_f.f:160:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel430_f.f:179:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel430_f.f:351:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel430_f.f:369:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel430_f.f:383:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel430_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:271:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:258:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:267:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:254:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:251:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:257:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:272:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:270:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:275:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel331_f.lo nb_kernel331_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel331_f.f  -fPIC -o .libs/nb_kernel331_f.o
nb_kernel331_f.f:165:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel331_f.f:174:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel331_f.f:183:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel331_f.f:199:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel331_f.f:247:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel331_f.f:273:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel331_f.f:460:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel331_f.f:469:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel331_f.f:478:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel331_f.f:494:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel331_f.f:526:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel331_f.f:540:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel331_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:360:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:347:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:356:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:343:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:340:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:358:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:357:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:355:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:346:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:361:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:359:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:364:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel410_f.lo nb_kernel410_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel410_f.f  -fPIC -o .libs/nb_kernel410_f.o
nb_kernel410_f.f:142:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel410_f.f:162:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel410_f.f:334:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel410_f.f:353:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel410_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:252:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:239:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:248:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:235:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:232:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:238:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:253:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:251:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:245:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:246:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:256:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel314_f.lo nb_kernel314_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel314_f.f  -fPIC -o .libs/nb_kernel314_f.o
nb_kernel314_f.f:224:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel314_f.f:233:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel314_f.f:242:29:

           fval             = rsq24
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel314_f.f:251:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel314_f.f:260:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel314_f.f:269:29:

           fval             = rsq34
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel314_f.f:278:29:

           fval             = rsq42
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel314_f.f:287:29:

           fval             = rsq43
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel314_f.f:296:29:

           fval             = rsq44
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel314_f.f:322:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:349:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:376:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:403:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:430:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:457:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:484:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:511:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:538:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:785:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel314_f.f:794:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel314_f.f:803:29:

           fval             = rsq24
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel314_f.f:812:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel314_f.f:821:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel314_f.f:830:29:

           fval             = rsq34
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel314_f.f:839:29:

           fval             = rsq42
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel314_f.f:848:29:

           fval             = rsq43
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel314_f.f:857:29:

           fval             = rsq44
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel314_f.f:873:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:888:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:903:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:918:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:933:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:948:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:963:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:978:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:993:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:628:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:615:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:624:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:611:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:608:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:626:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:625:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:623:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:614:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:629:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:627:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:632:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel334_f.lo nb_kernel334_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel334_f.f  -fPIC -o .libs/nb_kernel334_f.o
nb_kernel334_f.f:222:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel334_f.f:231:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel334_f.f:240:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel334_f.f:249:29:

           fval             = rsq24
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel334_f.f:258:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel334_f.f:267:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel334_f.f:276:29:

           fval             = rsq34
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel334_f.f:285:29:

           fval             = rsq42
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel334_f.f:294:29:

           fval             = rsq43
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel334_f.f:303:29:

           fval             = rsq44
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel334_f.f:314:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:352:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:379:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:406:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:433:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:460:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:487:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:514:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:541:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:568:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:812:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel334_f.f:821:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel334_f.f:830:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel334_f.f:839:29:

           fval             = rsq24
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel334_f.f:848:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel334_f.f:857:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel334_f.f:866:29:

           fval             = rsq34
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel334_f.f:875:29:

           fval             = rsq42
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel334_f.f:884:29:

           fval             = rsq43
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel334_f.f:893:29:

           fval             = rsq44
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel334_f.f:904:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:928:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:943:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:958:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:973:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:988:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:1003:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:1018:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:1033:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:1048:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:658:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:645:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:654:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:641:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:638:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:656:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:655:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:653:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:644:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:659:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:657:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:662:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o libnb_kernel.la  nb_kernel.lo nb_kernel010_f.lo nb_kernel020_f.lo nb_kernel030_f.lo nb_kernel100_f.lo nb_kernel101_f.lo nb_kernel102_f.lo nb_kernel103_f.lo nb_kernel104_f.lo nb_kernel110_f.lo nb_kernel111_f.lo nb_kernel112_f.lo nb_kernel113_f.lo nb_kernel114_f.lo nb_kernel120_f.lo nb_kernel121_f.lo nb_kernel122_f.lo nb_kernel123_f.lo nb_kernel124_f.lo nb_kernel130_f.lo nb_kernel131_f.lo nb_kernel132_f.lo nb_kernel133_f.lo nb_kernel134_f.lo nb_kernel200_f.lo nb_kernel201_f.lo nb_kernel202_f.lo nb_kernel203_f.lo nb_kernel204_f.lo nb_kernel210_f.lo nb_kernel211_f.lo nb_kernel212_f.lo nb_kernel213_f.lo nb_kernel214_f.lo nb_kernel220_f.lo nb_kernel221_f.lo nb_kernel222_f.lo nb_kernel223_f.lo nb_kernel224_f.lo nb_kernel230_f.lo nb_kernel231_f.lo nb_kernel232_f.lo nb_kernel233_f.lo nb_kernel234_f.lo nb_kernel300_f.lo nb_kernel301_f.lo nb_kernel302_f.lo nb_kernel303_f.lo nb_kernel304_f.lo nb_kernel310_f.lo nb_kernel311_f.lo nb_kernel312_f.lo nb_kernel313_f.lo nb_kernel314_f.lo nb_kernel320_f.lo nb_kernel321_f.lo nb_kernel322_f.lo nb_kernel323_f.lo nb_kernel324_f.lo nb_kernel330_f.lo nb_kernel331_f.lo nb_kernel332_f.lo nb_kernel333_f.lo nb_kernel334_f.lo nb_kernel400_f.lo nb_kernel410_f.lo nb_kernel420_f.lo nb_kernel430_f.lo  nb_kernel_f77sync.lo -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
ar cru .libs/libnb_kernel.a .libs/nb_kernel.o .libs/nb_kernel010_f.o .libs/nb_kernel020_f.o .libs/nb_kernel030_f.o .libs/nb_kernel100_f.o .libs/nb_kernel101_f.o .libs/nb_kernel102_f.o .libs/nb_kernel103_f.o .libs/nb_kernel104_f.o .libs/nb_kernel110_f.o .libs/nb_kernel111_f.o .libs/nb_kernel112_f.o .libs/nb_kernel113_f.o .libs/nb_kernel114_f.o .libs/nb_kernel120_f.o .libs/nb_kernel121_f.o .libs/nb_kernel122_f.o .libs/nb_kernel123_f.o .libs/nb_kernel124_f.o .libs/nb_kernel130_f.o .libs/nb_kernel131_f.o .libs/nb_kernel132_f.o .libs/nb_kernel133_f.o .libs/nb_kernel134_f.o .libs/nb_kernel200_f.o .libs/nb_kernel201_f.o .libs/nb_kernel202_f.o .libs/nb_kernel203_f.o .libs/nb_kernel204_f.o .libs/nb_kernel210_f.o .libs/nb_kernel211_f.o .libs/nb_kernel212_f.o .libs/nb_kernel213_f.o .libs/nb_kernel214_f.o .libs/nb_kernel220_f.o .libs/nb_kernel221_f.o .libs/nb_kernel222_f.o .libs/nb_kernel223_f.o .libs/nb_kernel224_f.o .libs/nb_kernel230_f.o .libs/nb_kernel231_f.o .libs/nb_kernel232_f.o .libs/nb_kernel233_f.o .libs/nb_kernel234_f.o .libs/nb_kernel300_f.o .libs/nb_kernel301_f.o .libs/nb_kernel302_f.o .libs/nb_kernel303_f.o .libs/nb_kernel304_f.o .libs/nb_kernel310_f.o .libs/nb_kernel311_f.o .libs/nb_kernel312_f.o .libs/nb_kernel313_f.o .libs/nb_kernel314_f.o .libs/nb_kernel320_f.o .libs/nb_kernel321_f.o .libs/nb_kernel322_f.o .libs/nb_kernel323_f.o .libs/nb_kernel324_f.o .libs/nb_kernel330_f.o .libs/nb_kernel331_f.o .libs/nb_kernel332_f.o .libs/nb_kernel333_f.o .libs/nb_kernel334_f.o .libs/nb_kernel400_f.o .libs/nb_kernel410_f.o .libs/nb_kernel420_f.o .libs/nb_kernel430_f.o .libs/nb_kernel_f77sync.o
ranlib .libs/libnb_kernel.a
creating libnb_kernel.la
(cd .libs && rm -f libnb_kernel.la && ln -s ../libnb_kernel.la libnb_kernel.la)
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded'
/bin/sh ../../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/nonbonded -I../../../src  -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_generic.lo ../../../../src/gmxlib/nonbonded/nb_generic.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/nonbonded -I../../../src -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/nonbonded/nb_generic.c  -fPIC -DPIC -o .libs/nb_generic.o
../../../../src/gmxlib/nonbonded/nb_generic.c: In function 'gmx_nb_generic_kernel':
../../../../src/gmxlib/nonbonded/nb_generic.c:82:16: warning: unused variable 'shift' [-Wunused-variable]
  int *         shift;
                ^~~~~
../../../../src/gmxlib/nonbonded/nb_generic.c:62:25: warning: unused variable 'gbtabscale' [-Wunused-variable]
     real          facel,gbtabscale;
                         ^~~~~~~~~~
../../../../src/gmxlib/nonbonded/nb_generic.c:61:19: warning: unused variable 'nri' [-Wunused-variable]
     int           nri,ntype,table_nelements,icoul,ivdw;
                   ^~~
In file included from ../../../../src/gmxlib/nonbonded/nb_generic.c:43:
At top level:
../../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../../include/vec.h:121,
                 from ../../../../src/gmxlib/nonbonded/nb_generic.c:43:
../../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded'
/bin/sh ../../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/nonbonded -I../../../src  -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_free_energy.lo ../../../../src/gmxlib/nonbonded/nb_free_energy.c
mkdir .libs
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/nonbonded -I../../../src -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/nonbonded/nb_free_energy.c  -fPIC -DPIC -o .libs/nb_free_energy.o
../../../../src/gmxlib/nonbonded/nb_free_energy.c: In function 'gmx_nb_free_energy_kernel':
../../../../src/gmxlib/nonbonded/nb_free_energy.c:100:25: warning: unused variable 'H' [-Wunused-variable]
     real          Y,F,G,H,Fp,Geps,Heps2,eps,eps2,VV,FF;
                         ^
../../../../src/gmxlib/nonbonded/nb_free_energy.c:100:23: warning: unused variable 'G' [-Wunused-variable]
     real          Y,F,G,H,Fp,Geps,Heps2,eps,eps2,VV,FF;
                       ^
../../../../src/gmxlib/nonbonded/nb_free_energy.c:89:19: warning: unused variable 'rinvsix' [-Wunused-variable]
     real          rinvsix;
                   ^~~~~~~
../../../../src/gmxlib/nonbonded/nb_free_energy.c:86:27: warning: unused variable 'vcoul' [-Wunused-variable]
     real          qqA,qqB,vcoul,vctot,krsq;
                           ^~~~~
In file included from ../../../../src/gmxlib/nonbonded/nb_free_energy.c:42:
At top level:
../../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../../include/vec.h:121,
                 from ../../../../src/gmxlib/nonbonded/nb_free_energy.c:42:
../../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded'
/bin/sh ../../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/nonbonded -I../../../src  -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nonbonded.lo ../../../../src/gmxlib/nonbonded/nonbonded.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/nonbonded -I../../../src -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/nonbonded/nonbonded.c  -fPIC -DPIC -o .libs/nonbonded.o
../../../../src/gmxlib/nonbonded/nonbonded.c: In function 'do_nonbonded':
../../../../src/gmxlib/nonbonded/nonbonded.c:283:18: warning: unused variable 'fp' [-Wunused-variable]
  FILE *          fp;
                  ^~
../../../../src/gmxlib/nonbonded/nonbonded.c:281:18: warning: unused variable 'bWater' [-Wunused-variable]
  bool            bWater;
                  ^~~~~~
../../../../src/gmxlib/nonbonded/nonbonded.c:279:43: warning: unused variable 'sz' [-Wunused-variable]
  int             n,n0,n1,i,i0,i1,nrnb_ind,sz;
                                           ^~
../../../../src/gmxlib/nonbonded/nonbonded.c: In function 'do_listed_vdw_q':
../../../../src/gmxlib/nonbonded/nonbonded.c:547:15: warning: unused variable 'tmplist' [-Wunused-variable]
     t_nblist  tmplist;
               ^~~~~~~
../../../../src/gmxlib/nonbonded/nonbonded.c:538:25: warning: unused variable 'i2' [-Wunused-variable]
     int       i0=0,i1=1,i2=2;
                         ^~
In file included from ../../../../src/gmxlib/nonbonded/nonbonded.c:53:
At top level:
../../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../../src/gmxlib/nonbonded/nonbonded.c:50:
../../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../../include/vec.h:121,
                 from ../../../../src/gmxlib/nonbonded/nonbonded.c:50:
../../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded'
/bin/sh ../../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o libnonbonded.la  nonbonded.lo nb_free_energy.lo nb_generic.lo          nb_kernel_ia32_sse2/libnb_kernel_ia32_sse2.la                             	 nb_kernel/libnb_kernel.la			 -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
rm -fr .libs/libnonbonded.lax
mkdir .libs/libnonbonded.lax
rm -fr .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a
mkdir .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a
(cd .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a && ar x /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_ia32_sse2/.libs/libnb_kernel_ia32_sse2.a)
rm -fr .libs/libnonbonded.lax/libnb_kernel.a
mkdir .libs/libnonbonded.lax/libnb_kernel.a
(cd .libs/libnonbonded.lax/libnb_kernel.a && ar x /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel/.libs/libnb_kernel.a)
ar cru .libs/libnonbonded.a .libs/nonbonded.o .libs/nb_free_energy.o .libs/nb_generic.o  .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel_ia32_sse2_test_asm.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel430_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel410_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel400_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel334_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel333_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel332_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel331_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel330_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel314_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel313_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel312_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel311_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel310_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel304_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel303_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel302_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel301_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel300_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel234_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel233_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel232_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel231_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel230_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel214_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel213_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel212_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel211_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel210_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel204_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel203_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel202_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel201_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel200_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel134_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel133_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel132_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel131_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel130_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel114_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel113_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel112_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel111_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel110_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel104_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel103_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel102_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel101_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel100_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel030_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel010_ia32_sse2.o  .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel_f77sync.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel430_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel420_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel410_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel400_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel334_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel333_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel332_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel331_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel330_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel324_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel323_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel322_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel321_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel320_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel314_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel313_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel312_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel311_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel310_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel304_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel303_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel302_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel301_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel300_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel234_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel233_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel232_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel231_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel230_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel224_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel223_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel222_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel221_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel220_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel214_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel213_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel212_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel211_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel210_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel204_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel203_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel202_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel201_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel200_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel134_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel133_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel132_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel131_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel130_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel124_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel123_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel122_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel121_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel120_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel114_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel113_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel112_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel111_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel110_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel104_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel103_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel102_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel101_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel100_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel030_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel020_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel010_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel.o 
ranlib .libs/libnonbonded.a
rm -fr .libs/libnonbonded.lax
creating libnonbonded.la
(cd .libs && rm -f libnonbonded.la && ln -s ../libnonbonded.la libnonbonded.la)
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded'
Making all in gmx_blas
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas'
/bin/sh ../../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dcopy.lo ../../../../src/gmxlib/gmx_blas/dcopy.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dcopy.c  -fPIC -DPIC -o .libs/dcopy.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas'
/bin/sh ../../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dasum.lo ../../../../src/gmxlib/gmx_blas/dasum.c
mkdir .libs
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dasum.c  -fPIC -DPIC -o .libs/dasum.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas'
/bin/sh ../../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o drot.lo ../../../../src/gmxlib/gmx_blas/drot.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/drot.c  -fPIC -DPIC -o .libs/drot.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas'
/bin/sh ../../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dswap.lo ../../../../src/gmxlib/gmx_blas/dswap.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dswap.c  -fPIC -DPIC -o .libs/dswap.o
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../../../../src/gmxlib/gmx_blas/dgemm.c: In function 'dgemm_':
../../../../src/gmxlib/gmx_blas/dgemm.c:27:19: warning: variable 'nrowb' set but not used [-Wunused-but-set-variable]
   int nrowa,ncola,nrowb;
                   ^~~~~
../../../../src/gmxlib/gmx_blas/dgemm.c:27:13: warning: variable 'ncola' set but not used [-Wunused-but-set-variable]
   int nrowa,ncola,nrowb;
             ^~~~~
../../../../src/gmxlib/gmx_blas/dgemm.c:27:7: warning: variable 'nrowa' set but not used [-Wunused-but-set-variable]
   int nrowa,ncola,nrowb;
       ^~~~~
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../../../../src/gmxlib/gmx_blas/dtrmm.c: In function 'dtrmm_':
../../../../src/gmxlib/gmx_blas/dtrmm.c:32:9: warning: variable 'nrowa' set but not used [-Wunused-but-set-variable]
     int nrowa;
         ^~~~~
../../../../src/gmxlib/gmx_blas/dtrmm.c:29:20: warning: variable 'info' set but not used [-Wunused-but-set-variable]
     int i__, j, k, info;
                    ^~~~
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../../../../src/gmxlib/gmx_blas/dtrmv.c: In function 'dtrmv_':
../../../../src/gmxlib/gmx_blas/dtrmv.c:18:29: warning: variable 'info' set but not used [-Wunused-but-set-variable]
     int i__, j, ix, jx, kx, info;
                             ^~~~
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   int nrowa;
       ^~~~~
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../../../../src/gmxlib/gmx_blas/sgemm.c:26:19: warning: variable 'nrowb' set but not used [-Wunused-but-set-variable]
   int nrowa,ncola,nrowb;
                   ^~~~~
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   int nrowa,ncola,nrowb;
             ^~~~~
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   int nrowa,ncola,nrowb;
       ^~~~~
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../../../../src/gmxlib/gmx_blas/strmm.c: In function 'strmm_':
../../../../src/gmxlib/gmx_blas/strmm.c:31:9: warning: variable 'nrowa' set but not used [-Wunused-but-set-variable]
     int nrowa;
         ^~~~~
../../../../src/gmxlib/gmx_blas/strmm.c:28:20: warning: variable 'info' set but not used [-Wunused-but-set-variable]
     int i__, j, k, info;
                    ^~~~
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   int nrowa;
       ^~~~~
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../../../../src/gmxlib/gmx_blas/strmv.c: In function 'strmv_':
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     int i__, j, ix, jx, kx, info;
                             ^~~~
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ranlib .libs/libblas.a
creating libblas.la
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   double one,minusone;
          ^~~
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     int i__, j, info;
                 ^~~~
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     double ftmp;
            ^~~~
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     double sminlo, tolmul;
            ^~~~~~
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../../../../src/gmxlib/gmx_lapack/dorm2r.c: In function 'dorm2r_':
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     int i__, i1, i2, i3, ic, jc, mi, ni, nq;
                                          ^~
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 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dgesdd.c  -fPIC -DPIC -o .libs/dgesdd.o
../../../../src/gmxlib/gmx_lapack/dgesdd.c: In function 'dgesdd_':
../../../../src/gmxlib/gmx_lapack/dgesdd.c:40:9: warning: variable 'wntqas' set but not used [-Wunused-but-set-variable]
     int wntqas, lquery;
         ^~~~~~
../../../../src/gmxlib/gmx_lapack/dgesdd.c:38:9: warning: variable 'minwrk' set but not used [-Wunused-but-set-variable]
     int minwrk, ldwrku, maxwrk, ldwkvt;
         ^~~~~~
../../../../src/gmxlib/gmx_lapack/dgesdd.c:35:16: warning: variable 'wntqo' set but not used [-Wunused-but-set-variable]
     int wntqn, wntqo, wntqs;
                ^~~~~
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../../../../src/gmxlib/gmx_lapack/dsyevr.c: In function 'dsyevr_':
../../../../src/gmxlib/gmx_lapack/dsyevr.c:36:12: warning: variable 'abstll' set but not used [-Wunused-but-set-variable]
     double abstll, bignum;
            ^~~~~~
../../../../src/gmxlib/gmx_lapack/dsyevr.c:33:17: warning: variable 'ieeeok' set but not used [-Wunused-but-set-variable]
     int iscale, ieeeok, indibl, indifl;
                 ^~~~~~
../../../../src/gmxlib/gmx_lapack/dsyevr.c:21:22: warning: variable 'vuu' set but not used [-Wunused-but-set-variable]
     double eps, vll, vuu, tmp1;
                      ^~~
../../../../src/gmxlib/gmx_lapack/dsyevr.c:21:17: warning: variable 'vll' set but not used [-Wunused-but-set-variable]
     double eps, vll, vuu, tmp1;
                 ^~~
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../../../../src/gmxlib/gmx_lapack/dlarrbx.c: In function 'dlarrbx_':
../../../../src/gmxlib/gmx_lapack/dlarrbx.c:36:33: warning: variable 'error' set but not used [-Wunused-but-set-variable]
     double right, width, dplus, error;
                                 ^~~~~
../../../../src/gmxlib/gmx_lapack/dlarrbx.c:34:12: warning: variable 'eps' set but not used [-Wunused-but-set-variable]
     double eps, tmp, left;
            ^~~
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../../../../src/gmxlib/gmx_lapack/sgetf2.c: In function 'sgetf2_':
../../../../src/gmxlib/gmx_lapack/sgetf2.c:17:9: warning: variable 'one' set but not used [-Wunused-but-set-variable]
   float one,minusone;
         ^~~
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../../../../src/gmxlib/gmx_lapack/slasr.c: In function 'slasr_':
../../../../src/gmxlib/gmx_lapack/slasr.c:21:17: warning: variable 'info' set but not used [-Wunused-but-set-variable]
     int i__, j, info;
                 ^~~~
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../../../../src/gmxlib/gmx_lapack/sbdsqr.c: In function 'sbdsqr_':
../../../../src/gmxlib/gmx_lapack/sbdsqr.c:61:11: warning: unused variable 'ftmp' [-Wunused-variable]
     float ftmp;
           ^~~~
../../../../src/gmxlib/gmx_lapack/sbdsqr.c:59:11: warning: variable 'sminlo' set but not used [-Wunused-but-set-variable]
     float sminlo, tolmul;
           ^~~~~~
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../../../../src/gmxlib/gmx_lapack/sorm2r.c: In function 'sorm2r_':
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     int i__, i1, i2, i3, ic, jc, mi, ni, nq;
                                          ^~
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../../../../src/gmxlib/gmx_lapack/sgesdd.c: In function 'sgesdd_':
../../../../src/gmxlib/gmx_lapack/sgesdd.c:40:9: warning: variable 'wntqas' set but not used [-Wunused-but-set-variable]
     int wntqas, lquery;
         ^~~~~~
../../../../src/gmxlib/gmx_lapack/sgesdd.c:38:9: warning: variable 'minwrk' set but not used [-Wunused-but-set-variable]
     int minwrk, ldwrku, maxwrk, ldwkvt;
         ^~~~~~
../../../../src/gmxlib/gmx_lapack/sgesdd.c:35:16: warning: variable 'wntqo' set but not used [-Wunused-but-set-variable]
     int wntqn, wntqo, wntqs;
                ^~~~~
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../../../../src/gmxlib/gmx_lapack/ssyevr.c: In function 'ssyevr_':
../../../../src/gmxlib/gmx_lapack/ssyevr.c:36:11: warning: variable 'abstll' set but not used [-Wunused-but-set-variable]
     float abstll, bignum;
           ^~~~~~
../../../../src/gmxlib/gmx_lapack/ssyevr.c:33:17: warning: variable 'ieeeok' set but not used [-Wunused-but-set-variable]
     int iscale, ieeeok, indibl, indifl;
                 ^~~~~~
../../../../src/gmxlib/gmx_lapack/ssyevr.c:21:21: warning: variable 'vuu' set but not used [-Wunused-but-set-variable]
     float eps, vll, vuu, tmp1;
                     ^~~
../../../../src/gmxlib/gmx_lapack/ssyevr.c:21:16: warning: variable 'vll' set but not used [-Wunused-but-set-variable]
     float eps, vll, vuu, tmp1;
                ^~~
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 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slansy.c  -fPIC -DPIC -o .libs/slansy.o
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make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack'
/bin/sh ../../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o slar1vx.lo ../../../../src/gmxlib/gmx_lapack/slar1vx.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slar1vx.c  -fPIC -DPIC -o .libs/slar1vx.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack'
/bin/sh ../../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o ilasrt2.lo ../../../../src/gmxlib/gmx_lapack/ilasrt2.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/ilasrt2.c  -fPIC -DPIC -o .libs/ilasrt2.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack'
/bin/sh ../../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o slarrfx.lo ../../../../src/gmxlib/gmx_lapack/slarrfx.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slarrfx.c  -fPIC -DPIC -o .libs/slarrfx.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack'
/bin/sh ../../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o slarrbx.lo ../../../../src/gmxlib/gmx_lapack/slarrbx.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slarrbx.c  -fPIC -DPIC -o .libs/slarrbx.o
../../../../src/gmxlib/gmx_lapack/slarrbx.c: In function 'slarrbx_':
../../../../src/gmxlib/gmx_lapack/slarrbx.c:36:32: warning: variable 'error' set but not used [-Wunused-but-set-variable]
     float right, width, dplus, error;
                                ^~~~~
../../../../src/gmxlib/gmx_lapack/slarrbx.c:34:11: warning: variable 'eps' set but not used [-Wunused-but-set-variable]
     float eps, tmp, left;
           ^~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack'
/bin/sh ../../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o ssteqr.lo ../../../../src/gmxlib/gmx_lapack/ssteqr.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/ssteqr.c  -fPIC -DPIC -o .libs/ssteqr.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack'
/bin/sh ../../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o slarrvx.lo ../../../../src/gmxlib/gmx_lapack/slarrvx.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slarrvx.c  -fPIC -DPIC -o .libs/slarrvx.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack'
/bin/sh ../../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o slarrex.lo ../../../../src/gmxlib/gmx_lapack/slarrex.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slarrex.c  -fPIC -DPIC -o .libs/slarrex.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack'
/bin/sh ../../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o liblapack.la  dbdsdc.lo dgetf2.lo dlamrg.lo dlarnv.lo dlasd0.lo dlasda.lo dlasq6.lo dorgl2.lo dormqr.lo dbdsqr.lo dgetrf.lo dlange.lo dlasd1.lo dtrtri.lo dlasdq.lo dlasr.lo dorglq.lo dormtr.lo dgebd2.lo dlabrd.lo dlanst.lo dlasd2.lo dlasdt.lo dlasrt.lo dorgqr.lo dstebz.lo dgebrd.lo dsytrd.lo dlacpy.lo dlapy2.lo dlasd3.lo dlaset.lo dlassq.lo dorm2l.lo dgetrs.lo dstegr.lo dgelq2.lo dlae2.lo dlasd4.lo dlasq1.lo dtrti2.lo dgetri.lo dlasv2.lo dorm2r.lo dstein.lo dgelqf.lo dlaebz.lo dlarf.lo dlartg.lo dlasd5.lo dlasq2.lo dlaswp.lo dormbr.lo dsterf.lo dgeqr2.lo dlaed6.lo dlarfb.lo dlaruv.lo dlasd6.lo dlasq3.lo dlatrd.lo dorml2.lo dstevr.lo dgeqrf.lo dlagtf.lo dlarfg.lo dlas2.lo dlasd7.lo dlasq4.lo dorg2r.lo dormlq.lo dsytd2.lo dgesdd.lo dlagts.lo dlarft.lo dlascl.lo dlasd8.lo dlasq5.lo dorgbr.lo dormql.lo dlaev2.lo dsteqr.lo dsyevr.lo dlasrt2.lo dlansy.lo dlar1vx.lo dlarrbx.lo dlarrex.lo dlarrfx.lo dlarrvx.lo sbdsdc.lo sgetf2.lo slamrg.lo slarnv.lo slasd0.lo slasda.lo slasq6.lo sorgl2.lo sormqr.lo sbdsqr.lo sgetrf.lo slange.lo slasd1.lo ssytrd.lo slasdq.lo slasr.lo sorglq.lo sormtr.lo sgebd2.lo slabrd.lo slanst.lo slasd2.lo slasdt.lo slasrt.lo sorgqr.lo sstebz.lo sgebrd.lo sgetrs.lo slacpy.lo slapy2.lo slasd3.lo slaset.lo slassq.lo sorm2l.lo sgetri.lo sstegr.lo sgelq2.lo slae2.lo slasd4.lo slasq1.lo strti2.lo strtri.lo slasv2.lo sorm2r.lo sstein.lo sgelqf.lo slaebz.lo slarf.lo slartg.lo slasd5.lo slasq2.lo slaswp.lo sormbr.lo ssterf.lo sgeqr2.lo slaed6.lo slarfb.lo slaruv.lo slasd6.lo slasq3.lo slatrd.lo sorml2.lo sstevr.lo sgeqrf.lo slagtf.lo slarfg.lo slas2.lo slasd7.lo slasq4.lo sorg2r.lo sormlq.lo ssytd2.lo sgesdd.lo slagts.lo slarft.lo slascl.lo slasd8.lo slasq5.lo sorgbr.lo sormql.lo slaev2.lo ssteqr.lo ssyevr.lo slasrt2.lo slansy.lo slar1vx.lo slarrbx.lo slarrex.lo slarrfx.lo slarrvx.lo ilasrt2.lo  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
ar cru .libs/liblapack.a .libs/dbdsdc.o .libs/dgetf2.o .libs/dlamrg.o .libs/dlarnv.o .libs/dlasd0.o .libs/dlasda.o .libs/dlasq6.o .libs/dorgl2.o .libs/dormqr.o .libs/dbdsqr.o .libs/dgetrf.o .libs/dlange.o .libs/dlasd1.o .libs/dtrtri.o .libs/dlasdq.o .libs/dlasr.o .libs/dorglq.o .libs/dormtr.o .libs/dgebd2.o .libs/dlabrd.o .libs/dlanst.o .libs/dlasd2.o .libs/dlasdt.o .libs/dlasrt.o .libs/dorgqr.o .libs/dstebz.o .libs/dgebrd.o .libs/dsytrd.o .libs/dlacpy.o .libs/dlapy2.o .libs/dlasd3.o .libs/dlaset.o .libs/dlassq.o .libs/dorm2l.o .libs/dgetrs.o .libs/dstegr.o .libs/dgelq2.o .libs/dlae2.o .libs/dlasd4.o .libs/dlasq1.o .libs/dtrti2.o .libs/dgetri.o .libs/dlasv2.o .libs/dorm2r.o .libs/dstein.o .libs/dgelqf.o .libs/dlaebz.o .libs/dlarf.o .libs/dlartg.o .libs/dlasd5.o .libs/dlasq2.o .libs/dlaswp.o .libs/dormbr.o .libs/dsterf.o .libs/dgeqr2.o .libs/dlaed6.o .libs/dlarfb.o .libs/dlaruv.o .libs/dlasd6.o .libs/dlasq3.o .libs/dlatrd.o .libs/dorml2.o .libs/dstevr.o .libs/dgeqrf.o .libs/dlagtf.o .libs/dlarfg.o .libs/dlas2.o .libs/dlasd7.o .libs/dlasq4.o .libs/dorg2r.o .libs/dormlq.o .libs/dsytd2.o .libs/dgesdd.o .libs/dlagts.o .libs/dlarft.o .libs/dlascl.o .libs/dlasd8.o .libs/dlasq5.o .libs/dorgbr.o .libs/dormql.o .libs/dlaev2.o .libs/dsteqr.o .libs/dsyevr.o .libs/dlasrt2.o .libs/dlansy.o .libs/dlar1vx.o .libs/dlarrbx.o .libs/dlarrex.o .libs/dlarrfx.o .libs/dlarrvx.o .libs/sbdsdc.o .libs/sgetf2.o .libs/slamrg.o .libs/slarnv.o .libs/slasd0.o .libs/slasda.o .libs/slasq6.o .libs/sorgl2.o .libs/sormqr.o .libs/sbdsqr.o .libs/sgetrf.o .libs/slange.o .libs/slasd1.o .libs/ssytrd.o .libs/slasdq.o .libs/slasr.o .libs/sorglq.o .libs/sormtr.o .libs/sgebd2.o .libs/slabrd.o .libs/slanst.o .libs/slasd2.o .libs/slasdt.o .libs/slasrt.o .libs/sorgqr.o .libs/sstebz.o .libs/sgebrd.o .libs/sgetrs.o .libs/slacpy.o .libs/slapy2.o .libs/slasd3.o .libs/slaset.o .libs/slassq.o .libs/sorm2l.o .libs/sgetri.o .libs/sstegr.o .libs/sgelq2.o .libs/slae2.o .libs/slasd4.o .libs/slasq1.o .libs/strti2.o .libs/strtri.o .libs/slasv2.o .libs/sorm2r.o .libs/sstein.o .libs/sgelqf.o .libs/slaebz.o .libs/slarf.o .libs/slartg.o .libs/slasd5.o .libs/slasq2.o .libs/slaswp.o .libs/sormbr.o .libs/ssterf.o .libs/sgeqr2.o .libs/slaed6.o .libs/slarfb.o .libs/slaruv.o .libs/slasd6.o .libs/slasq3.o .libs/slatrd.o .libs/sorml2.o .libs/sstevr.o .libs/sgeqrf.o .libs/slagtf.o .libs/slarfg.o .libs/slas2.o .libs/slasd7.o .libs/slasq4.o .libs/sorg2r.o .libs/sormlq.o .libs/ssytd2.o .libs/sgesdd.o .libs/slagts.o .libs/slarft.o .libs/slascl.o .libs/slasd8.o .libs/slasq5.o .libs/sorgbr.o .libs/sormql.o .libs/slaev2.o .libs/ssteqr.o .libs/ssyevr.o .libs/slasrt2.o .libs/slansy.o .libs/slar1vx.o .libs/slarrbx.o .libs/slarrex.o .libs/slarrfx.o .libs/slarrvx.o .libs/ilasrt2.o
ranlib .libs/liblapack.a
creating liblapack.la
(cd .libs && rm -f liblapack.la && ln -s ../liblapack.la liblapack.la)
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o calcgrid.lo ../../../src/gmxlib/calcgrid.c
mkdir .libs
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/calcgrid.c  -fPIC -DPIC -o .libs/calcgrid.o
../../../src/gmxlib/calcgrid.c: In function 'calc_grid':
../../../src/gmxlib/calcgrid.c:89:8: warning: unused variable 'tmp' [-Wunused-variable]
   real tmp[3];
        ^~~
../../../src/gmxlib/calcgrid.c:86:10: warning: unused variable 'j' [-Wunused-variable]
   int  i,j,nmin[DIM];
          ^
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o calch.lo ../../../src/gmxlib/calch.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/calch.c  -fPIC -DPIC -o .libs/calch.o
../../../src/gmxlib/calch.c: In function 'gen_waterhydrogen':
../../../src/gmxlib/calch.c:81:14: warning: unused variable 'kkk' [-Wunused-variable]
   rvec       kkk;
              ^~~
In file included from ../../../src/gmxlib/calch.c:43:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/gmxlib/calch.c:42:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o copyrite.lo ../../../src/gmxlib/copyrite.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/copyrite.c  -fPIC -DPIC -o .libs/copyrite.o
../../../src/gmxlib/copyrite.c: In function 'cool_quote':
../../../src/gmxlib/copyrite.c:181:9: warning: unused variable 's' [-Wunused-variable]
   char *s,*ptr;
         ^
../../../src/gmxlib/copyrite.c: In function 'please_cite':
../../../src/gmxlib/copyrite.c:469:8: warning: unused variable 'j' [-Wunused-variable]
   int  j,index;
        ^
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/copyrite.c:53:
At top level:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o 3dview.lo ../../../src/gmxlib/3dview.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/3dview.c  -fPIC -DPIC -o .libs/3dview.o
../../../src/gmxlib/3dview.c: In function 'reset_view':
../../../src/gmxlib/3dview.c:282:8: warning: unused variable 'i' [-Wunused-variable]
   int  i;
        ^
In file included from ../../../src/gmxlib/3dview.c:47:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/3dview.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o atomprop.lo ../../../src/gmxlib/atomprop.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/atomprop.c  -fPIC -DPIC -o .libs/atomprop.o
In file included from ../../../src/gmxlib/atomprop.c:52:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/gmxlib/atomprop.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o confio.lo ../../../src/gmxlib/confio.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/confio.c  -fPIC -DPIC -o .libs/confio.o
../../../src/gmxlib/confio.c: In function 'read_espresso_conf':
../../../src/gmxlib/confio.c:448:21: warning: unused variable 'npar' [-Wunused-variable]
   int  natoms,level,npar,r,nprop,p,i,m;
                     ^~~~
../../../src/gmxlib/confio.c:448:8: warning: unused variable 'natoms' [-Wunused-variable]
   int  natoms,level,npar,r,nprop,p,i,m;
        ^~~~~~
../../../src/gmxlib/confio.c: In function 'read_stx_conf':
../../../src/gmxlib/confio.c:1298:14: warning: unused variable 'd' [-Wunused-variable]
   real       d,r1,r2;
              ^
../../../src/gmxlib/confio.c:1293:14: warning: unused variable 'buf' [-Wunused-variable]
   char       buf[256];
              ^~~
At top level:
../../../src/gmxlib/confio.c:864:13: warning: 'get_conf' defined but not used [-Wunused-function]
 static void get_conf(FILE *in, char *title, int *natoms,
             ^~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/confio.c:59:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/gmxlib/confio.c:57:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/gmxlib/confio.c:54:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/gmxlib/confio.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/confio.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
../../../src/gmxlib/confio.c: In function 'write_hconf_box':
../../../src/gmxlib/confio.c:983:20: warning: '%d' directive writing between 2 and 10 bytes into a region of size between 7 and 75 [-Wformat-overflow=]
     sprintf(format,"%%%d.%df%%%d.%df%%%d.%df"
                    ^~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/gmxlib/confio.c:984:17: note: format string is defined here
      "%%%d.%df%%%d.%df%%%d.%df%%%d.%df%%%d.%df%%%d.%df\n",
                 ^~
../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [10, 2147483647]
     sprintf(format,"%%%d.%df%%%d.%df%%%d.%df"
                    ^~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [5, 2147483647]
../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [10, 2147483647]
../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [5, 2147483647]
../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [10, 2147483647]
../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [5, 2147483647]
../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [10, 2147483647]
../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [5, 2147483647]
../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [10, 2147483647]
../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [5, 2147483647]
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/gmxlib/confio.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 56 and 209 bytes into a destination of size 100
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o checkpoint.lo ../../../src/gmxlib/checkpoint.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/checkpoint.c  -fPIC -DPIC -o .libs/checkpoint.o
../../../src/gmxlib/checkpoint.c: In function 'do_cpte_ints':
../../../src/gmxlib/checkpoint.c:305:16: warning: unused variable 'i' [-Wunused-variable]
     int  nf,dt,i;
                ^
../../../src/gmxlib/checkpoint.c: In function 'do_cpte_doubles':
../../../src/gmxlib/checkpoint.c:371:16: warning: unused variable 'i' [-Wunused-variable]
     int  nf,dt,i;
                ^
../../../src/gmxlib/checkpoint.c: In function 'do_cpt_header':
../../../src/gmxlib/checkpoint.c:534:10: warning: unused variable 'i' [-Wunused-variable]
     int  i;
          ^
../../../src/gmxlib/checkpoint.c: In function 'do_cpt_files':
../../../src/gmxlib/checkpoint.c:743:9: warning: unused variable 'mask' [-Wunused-variable]
  off_t  mask = 0xFFFFFFFFL;
         ^~~~
../../../src/gmxlib/checkpoint.c: In function 'write_checkpoint':
../../../src/gmxlib/checkpoint.c:837:30: warning: unused variable 'i' [-Wunused-variable]
     int  flags_eks,flags_enh,i;
                              ^
../../../src/gmxlib/checkpoint.c:833:29: warning: unused variable 'flag_64bit' [-Wunused-variable]
     int  nppnodes,npmenodes,flag_64bit;
                             ^~~~~~~~~~
../../../src/gmxlib/checkpoint.c: In function 'read_checkpoint':
../../../src/gmxlib/checkpoint.c:1254:40: warning: left-hand operand of comma expression has no effect [-Wunused-value]
             if (outputfiles[i].filename,outputfiles[i].offset < 0)
                                        ^
../../../src/gmxlib/checkpoint.c:1036:7: warning: unused variable 'filename' [-Wunused-variable]
  char filename[STRLEN];
       ^~~~~~~~
../../../src/gmxlib/checkpoint.c:1033:15: warning: unused variable 'j' [-Wunused-variable]
     int  fp,i,j;
               ^
../../../src/gmxlib/checkpoint.c: In function 'list_checkpoint':
../../../src/gmxlib/checkpoint.c:1421:12: warning: unused variable 'j' [-Wunused-variable]
     int  i,j;
            ^
../../../src/gmxlib/checkpoint.c:1421:10: warning: unused variable 'i' [-Wunused-variable]
     int  i,j;
          ^
../../../src/gmxlib/checkpoint.c:1420:10: warning: unused variable 'indent' [-Wunused-variable]
     int  indent;
          ^~~~~~
In file included from ../../../src/gmxlib/checkpoint.c:34:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/checkpoint.c:34:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/checkpoint.c:32:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o disre.lo ../../../src/gmxlib/disre.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/disre.c  -fPIC -DPIC -o .libs/disre.o
../../../src/gmxlib/disre.c: In function 'init_disres':
../../../src/gmxlib/disre.c:62:19: warning: variable 'ip' set but not used [-Wunused-but-set-variable]
     t_iparams    *ip;
                   ^~
../../../src/gmxlib/disre.c:61:26: warning: unused variable 'i' [-Wunused-variable]
     int          fa,nmol,i,npair,np;
                          ^
../../../src/gmxlib/disre.c: In function 'calc_disres_R_6':
../../../src/gmxlib/disre.c:217:23: warning: unused variable 'dt' [-Wunused-variable]
     ivec        it,jt,dt;
                       ^~
../../../src/gmxlib/disre.c:217:20: warning: unused variable 'jt' [-Wunused-variable]
     ivec        it,jt,dt;
                    ^~
../../../src/gmxlib/disre.c:217:17: warning: unused variable 'it' [-Wunused-variable]
     ivec        it,jt,dt;
                 ^~
../../../src/gmxlib/disre.c:212:37: warning: unused variable 'm' [-Wunused-variable]
     int         fa,res,i,pair,ki,kj,m;
                                     ^
../../../src/gmxlib/disre.c:212:34: warning: unused variable 'kj' [-Wunused-variable]
     int         fa,res,i,pair,ki,kj,m;
                                  ^~
../../../src/gmxlib/disre.c:212:31: warning: unused variable 'ki' [-Wunused-variable]
     int         fa,res,i,pair,ki,kj,m;
                               ^~
../../../src/gmxlib/disre.c:212:24: warning: unused variable 'i' [-Wunused-variable]
     int         fa,res,i,pair,ki,kj,m;
                        ^
../../../src/gmxlib/disre.c: In function 'ta_disres':
../../../src/gmxlib/disre.c:338:20: warning: unused variable 'jt' [-Wunused-variable]
     ivec        it,jt,dt;
                    ^~
../../../src/gmxlib/disre.c:338:17: warning: unused variable 'it' [-Wunused-variable]
     ivec        it,jt,dt;
                 ^~
In file included from ../../../src/gmxlib/disre.c:52:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/gmxlib/disre.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/disre.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o enxio.lo ../../../src/gmxlib/enxio.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/enxio.c  -fPIC -DPIC -o .libs/enxio.o
../../../src/gmxlib/enxio.c: In function 'empty_file':
../../../src/gmxlib/enxio.c:220:8: warning: variable 'ret' set but not used [-Wunused-but-set-variable]
   int  ret;
        ^~~
../../../src/gmxlib/enxio.c: In function 'get_enx_state':
../../../src/gmxlib/enxio.c:443:16: warning: unused variable 'pcouplmu_nm' [-Wunused-variable]
   static char *pcouplmu_nm[] = {
                ^~~~~~~~~~~
At top level:
../../../src/gmxlib/enxio.c:443:16: warning: 'pcouplmu_nm' defined but not used [-Wunused-variable]
In file included from ../../../src/gmxlib/enxio.c:46:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/enxio.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o do_fit.lo ../../../src/gmxlib/do_fit.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/do_fit.c  -fPIC -DPIC -o .libs/do_fit.o
../../../src/gmxlib/do_fit.c: In function 'calc_fit_R':
../../../src/gmxlib/do_fit.c:103:18: warning: unused variable 'm' [-Wunused-variable]
   int    c,r,n,j,m,i,irot,s;
                  ^
../../../src/gmxlib/do_fit.c: In function 'do_fit_ndim':
../../../src/gmxlib/do_fit.c:214:10: warning: unused variable 'i' [-Wunused-variable]
   int    i,j,m,r,c;
          ^
In file included from ../../../src/gmxlib/do_fit.c:44:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/gmxlib/do_fit.c:40:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o ffscanf.lo ../../../src/gmxlib/ffscanf.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/ffscanf.c  -fPIC -DPIC -o .libs/ffscanf.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_fatal.lo ../../../src/gmxlib/gmx_fatal.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/gmx_fatal.c  -fPIC -DPIC -o .libs/gmx_fatal.o
../../../src/gmxlib/gmx_fatal.c:226:13: warning: 'fatal_error' defined but not used [-Wunused-function]
 static void fatal_error(int f_errno,const char *fmt,...)
             ^~~~~~~~~~~
../../../src/gmxlib/gmx_fatal.c:115:13: warning: 'bputi' defined but not used [-Wunused-function]
 static void bputi(char *msg,int *len,int val,int radix,int fld,bool bNeg)
             ^~~~~
In file included from ../../../src/gmxlib/gmx_fatal.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/gmx_fatal.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o ifunc.lo ../../../src/gmxlib/ifunc.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/ifunc.c  -fPIC -DPIC -o .libs/ifunc.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o futil.lo ../../../src/gmxlib/futil.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/futil.c  -fPIC -DPIC -o .libs/futil.o
../../../src/gmxlib/futil.c: In function 'ffopen':
../../../src/gmxlib/futil.c:287:18: warning: unused variable 'bf' [-Wunused-variable]
   char buf[256],*bf,*bufsize=0,*ptr;
                  ^~
../../../src/gmxlib/futil.c: In function 'get_libdir':
../../../src/gmxlib/futil.c:397:22: warning: variable 'pdum' set but not used [-Wunused-but-set-variable]
   char *dir,*ptr,*s,*pdum;
                      ^~~~
../../../src/gmxlib/futil.c:395:8: warning: unused variable 'test_file' [-Wunused-variable]
   char test_file[MAX_PATHBUF];
        ^~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/futil.c:53:
At top level:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
../../../src/gmxlib/futil.c: In function 'ffopen':
../../../src/gmxlib/futil.c:187:28: warning: '%s' directive writing up to 255 bytes into a region of size 244 [-Wformat-overflow=]
   sprintf(buf,"gunzip -c < %s",fn);
                            ^~
../../../src/gmxlib/futil.c:329:12:
  ff=gunzip(buf,mode);
            ~~~              
In file included from /usr/include/stdio.h:862,
                 from ../../../src/gmxlib/futil.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 13 and 268 bytes into a destination of size 256
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/gmxlib/futil.c:173:32: warning: '%s' directive writing up to 255 bytes into a region of size 240 [-Wformat-overflow=]
   sprintf(buf,"uncompress -c < %s",fn);
                                ^~
../../../src/gmxlib/futil.c:324:21:
       ff=uncompress(buf,mode);
                     ~~~         
In file included from /usr/include/stdio.h:862,
                 from ../../../src/gmxlib/futil.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 17 and 272 bytes into a destination of size 256
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gbutil.lo ../../../src/gmxlib/gbutil.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/gbutil.c  -fPIC -DPIC -o .libs/gbutil.o
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/gmxlib/gbutil.c:45:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/gmxlib/gbutil.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/gbutil.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o ewald_util.lo ../../../src/gmxlib/ewald_util.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/ewald_util.c  -fPIC -DPIC -o .libs/ewald_util.o
In file included from ../../../src/gmxlib/ewald_util.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/ewald_util.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o cinvsqrtdata.lo ../../../src/gmxlib/cinvsqrtdata.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/cinvsqrtdata.c  -fPIC -DPIC -o .libs/cinvsqrtdata.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o invblock.lo ../../../src/gmxlib/invblock.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/invblock.c  -fPIC -DPIC -o .libs/invblock.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o macros.lo ../../../src/gmxlib/macros.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/macros.c  -fPIC -DPIC -o .libs/macros.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmxfio.lo ../../../src/gmxlib/gmxfio.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/gmxfio.c  -fPIC -DPIC -o .libs/gmxfio.o
../../../src/gmxlib/gmxfio.c: In function 'gmx_fio_fopen':
../../../src/gmxlib/gmxfio.c:803:8: warning: unused variable 'fp' [-Wunused-variable]
  FILE *fp;
        ^~
../../../src/gmxlib/gmxfio.c: In function 'gmx_fio_get_output_file_positions':
../../../src/gmxlib/gmxfio.c:885:27: warning: unused variable 'pos' [-Wunused-variable]
  long                     pos;
                           ^~~
../../../src/gmxlib/gmxfio.c:884:34: warning: unused variable 'pos_lo' [-Wunused-variable]
  int                      pos_hi,pos_lo;
                                  ^~~~~~
../../../src/gmxlib/gmxfio.c:884:27: warning: unused variable 'pos_hi' [-Wunused-variable]
  int                      pos_hi,pos_lo;
                           ^~~~~~
../../../src/gmxlib/gmxfio.c:883:36: warning: unused variable 'rc' [-Wunused-variable]
  int                      i,nfiles,rc,nalloc;
                                    ^~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o filenm.lo ../../../src/gmxlib/filenm.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/filenm.c  -fPIC -DPIC -o .libs/filenm.o
../../../src/gmxlib/filenm.c: In function 'add_suffix_to_output_names':
../../../src/gmxlib/filenm.c:811:12: warning: unused variable 'pos' [-Wunused-variable]
  int   i,j,pos;
            ^~~
In file included from ../../../include/wman.h:44,
                 from ../../../src/gmxlib/filenm.c:48:
At top level:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
../../../src/gmxlib/filenm.c: In function 'add_suffix_to_output_names':
../../../src/gmxlib/filenm.c:825:27: warning: '.' directive writing 1 byte into a region of size between 0 and 4095 [-Wformat-overflow=]
     sprintf(newname,"%s.%s.%s",buf,suffix,extpos+1);
                           ^
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/gmxlib/filenm.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 3 or more bytes (assuming 4098) into a destination of size 4096
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o main.lo ../../../src/gmxlib/main.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/main.c  -fPIC -DPIC -o .libs/main.o
../../../src/gmxlib/main.c: In function 'par_fn':
../../../src/gmxlib/main.c:68:7: warning: unused variable 'n' [-Wunused-variable]
   int n;
       ^
../../../src/gmxlib/main.c: In function 'gmx_log_open':
../../../src/gmxlib/main.c:124:12: warning: unused variable 'testlen' [-Wunused-variable]
   int  len,testlen,pid;
            ^~~~~~~
../../../src/gmxlib/main.c: In function 'init_multisystem':
../../../src/gmxlib/main.c:235:8: warning: unused variable 'rank' [-Wunused-variable]
   int *rank;
        ^~~~
../../../src/gmxlib/main.c: In function 'init_par':
../../../src/gmxlib/main.c:309:13: warning: unused variable 'i' [-Wunused-variable]
   int       i;
             ^
../../../src/gmxlib/main.c:308:15: warning: variable 'argv' set but not used [-Wunused-but-set-variable]
   char      **argv;
               ^~~~
In file included from ../../../include/pull.h:44,
                 from ../../../include/mdrun.h:56,
                 from ../../../src/gmxlib/main.c:52:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../include/pull.h:44,
                 from ../../../include/mdrun.h:56,
                 from ../../../src/gmxlib/main.c:52:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/mdrun.h:50,
                 from ../../../src/gmxlib/main.c:52:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o sparsematrix.lo ../../../src/gmxlib/sparsematrix.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/sparsematrix.c  -fPIC -DPIC -o .libs/sparsematrix.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o maths.lo ../../../src/gmxlib/maths.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/maths.c  -fPIC -DPIC -o .libs/maths.o
../../../src/gmxlib/maths.c: In function 'gmx_erfc':
../../../src/gmxlib/maths.c:291:31: warning: unused variable 'z4' [-Wunused-variable]
      double r1,r2,s1,s2,s3,z2,z4;
                               ^~
../../../src/gmxlib/maths.c:291:28: warning: unused variable 'z2' [-Wunused-variable]
      double r1,r2,s1,s2,s3,z2,z4;
                            ^~
../../../src/gmxlib/maths.c:291:25: warning: unused variable 's3' [-Wunused-variable]
      double r1,r2,s1,s2,s3,z2,z4;
                         ^~
../../../src/gmxlib/maths.c:291:22: warning: unused variable 's2' [-Wunused-variable]
      double r1,r2,s1,s2,s3,z2,z4;
                      ^~
../../../src/gmxlib/maths.c:291:19: warning: unused variable 's1' [-Wunused-variable]
      double r1,r2,s1,s2,s3,z2,z4;
                   ^~
../../../src/gmxlib/maths.c:291:16: warning: unused variable 'r2' [-Wunused-variable]
      double r1,r2,s1,s2,s3,z2,z4;
                ^~
../../../src/gmxlib/maths.c:291:13: warning: unused variable 'r1' [-Wunused-variable]
      double r1,r2,s1,s2,s3,z2,z4;
             ^~
../../../src/gmxlib/maths.c:337:13: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
             if(hx<0&&ix>=0x40180000)
             ^~
../../../src/gmxlib/maths.c:339:10: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
          R=rb0+s*(rb1+s*(rb2+s*(rb3+s*(rb4+s*(rb5+s*rb6)))));
          ^
In file included from ../../../src/gmxlib/maths.c:43:
At top level:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o bondfree.lo ../../../src/gmxlib/bondfree.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/bondfree.c  -fPIC -DPIC -o .libs/bondfree.o
../../../src/gmxlib/bondfree.c: In function 'FENE_bonds':
../../../src/gmxlib/bondfree.c:220:9: warning: unused variable 'dr' [-Wunused-variable]
   real  dr,dr2,bm2,omdr2obm2,fbond,vbond,fij,vtot;
         ^~
../../../src/gmxlib/bondfree.c: In function 'do_1_thole':
../../../src/gmxlib/bondfree.c:534:20: warning: unused variable 'r12n' [-Wunused-variable]
   real r12sq,r12_1,r12n,r12bar,v0,v1,fscal,ebar,fff;
                    ^~~~
../../../src/gmxlib/bondfree.c: In function 'posres':
../../../src/gmxlib/bondfree.c:1136:19: warning: unused variable 'fc' [-Wunused-variable]
   real v,vtot,fm,*fc;
                   ^~
../../../src/gmxlib/bondfree.c:1134:22: warning: unused variable 'ki' [-Wunused-variable]
   int  i,ai,m,d,type,ki,npbcdim=0;
                      ^~
../../../src/gmxlib/bondfree.c: In function 'cross_bond_angle':
../../../src/gmxlib/bondfree.c:1687:32: warning: variable 't3' set but not used [-Wunused-but-set-variable]
   int  i,ai,aj,ak,type,m,t1,t2,t3;
                                ^~
../../../src/gmxlib/bondfree.c: In function 'bonded_tab':
../../../src/gmxlib/bondfree.c:1762:10: warning: unused variable 'f' [-Wunused-variable]
   real v,f,dvdl;
          ^
../../../src/gmxlib/bondfree.c:1762:8: warning: unused variable 'v' [-Wunused-variable]
   real v,f,dvdl;
        ^
../../../src/gmxlib/bondfree.c: In function 'tab_angles':
../../../src/gmxlib/bondfree.c:1887:12: warning: unused variable 'snt' [-Wunused-variable]
       real snt,st,sth;
            ^~~
In file included from ../../../src/gmxlib/bondfree.c:56:
At top level:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/gmxlib/bondfree.c:42:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/bondfree.c:42:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o mtop_util.lo ../../../src/gmxlib/mtop_util.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/mtop_util.c  -fPIC -DPIC -o .libs/mtop_util.o
../../../src/gmxlib/mtop_util.c: In function 'gmx_mtop_atomnr_to_molblock_ind':
../../../src/gmxlib/mtop_util.c:105:14: warning: unused variable 'atoms' [-Wunused-variable]
     t_atoms *atoms;
              ^~~~~
../../../src/gmxlib/mtop_util.c: In function 'gmx_mtop_atominfo_global':
../../../src/gmxlib/mtop_util.c:132:21: warning: unused variable 'molb' [-Wunused-variable]
     gmx_molblock_t *molb;
                     ^~~~
../../../src/gmxlib/mtop_util.c: In function 'gmx_mtop_ilistloop_all_next':
../../../src/gmxlib/mtop_util.c:384:21: warning: unused variable 'molb' [-Wunused-variable]
     gmx_molblock_t *molb;
                     ^~~~
../../../src/gmxlib/mtop_util.c: In function 'gmx_mtop_global_cgs':
../../../src/gmxlib/mtop_util.c:438:14: warning: unused variable 'atoms' [-Wunused-variable]
     t_atoms *atoms;
              ^~~~~
../../../src/gmxlib/mtop_util.c: In function 'gen_local_top':
../../../src/gmxlib/mtop_util.c:669:31: warning: unused variable 'mt' [-Wunused-variable]
     int mb,srcnr,destnr,ftype,mt,natoms,nposre_old;
                               ^~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o orires.lo ../../../src/gmxlib/orires.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/orires.c  -fPIC -DPIC -o .libs/orires.o
../../../src/gmxlib/orires.c: In function 'init_orires':
../../../src/gmxlib/orires.c:59:26: warning: unused variable 'nr' [-Wunused-variable]
     int    i,j,d,ex,nmol,nr,*nr_ex;
                          ^~
In file included from ../../../src/gmxlib/orires.c:49:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/gmxlib/orires.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/orires.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o matio.lo ../../../src/gmxlib/matio.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/matio.c  -fPIC -DPIC -o .libs/matio.o
../../../src/gmxlib/matio.c: In function 'write_xpm_map_split':
../../../src/gmxlib/matio.c:636:16: warning: unused variable 'fac' [-Wunused-variable]
   real   r,g,b,fac;
                ^~~
../../../src/gmxlib/matio.c:636:14: warning: unused variable 'b' [-Wunused-variable]
   real   r,g,b,fac;
              ^
../../../src/gmxlib/matio.c:636:12: warning: unused variable 'g' [-Wunused-variable]
   real   r,g,b,fac;
            ^
../../../src/gmxlib/matio.c:636:10: warning: unused variable 'r' [-Wunused-variable]
   real   r,g,b,fac;
          ^
../../../src/gmxlib/matio.c:635:10: warning: unused variable 'i' [-Wunused-variable]
   int    i,ntot;
          ^
In file included from ../../../src/gmxlib/matio.c:50:
At top level:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/matio.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o index.lo ../../../src/gmxlib/index.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/index.c  -fPIC -DPIC -o .libs/index.o
../../../src/gmxlib/index.c: In function 'analyse_prot':
../../../src/gmxlib/index.c:298:15: warning: unused variable 'nnpres' [-Wunused-variable]
   int     nra,nnpres,npres;
               ^~~~~~
../../../src/gmxlib/index.c: In function 'init_index':
../../../src/gmxlib/index.c:532:19: warning: variable 'nread' set but not used [-Wunused-but-set-variable]
   int      i,j,ng,nread;
                   ^~~~~
In file included from ../../../src/gmxlib/index.c:51:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/index.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o names.lo ../../../src/gmxlib/names.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/names.c  -fPIC -DPIC -o .libs/names.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o mtxio.lo ../../../src/gmxlib/mtxio.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/mtxio.c  -fPIC -DPIC -o .libs/mtxio.o
../../../src/gmxlib/mtxio.c: In function 'gmx_mtxio_write':
../../../src/gmxlib/mtxio.c:90:13: warning: variable 'xd' set but not used [-Wunused-but-set-variable]
     XDR *   xd;
             ^~
../../../src/gmxlib/mtxio.c: In function 'gmx_mtxio_read':
../../../src/gmxlib/mtxio.c:164:13: warning: variable 'xd' set but not used [-Wunused-but-set-variable]
     XDR *   xd;
             ^~
In file included from ../../../src/gmxlib/mtxio.c:48:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nrama.lo ../../../src/gmxlib/nrama.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/nrama.c  -fPIC -DPIC -o .libs/nrama.o
../../../src/gmxlib/nrama.c: In function 'get_dih2':
../../../src/gmxlib/nrama.c:179:11: warning: unused variable 'found' [-Wunused-variable]
   int     found,**ff,thisff[NPP];
           ^~~~~
../../../src/gmxlib/nrama.c: In function 'init_rama':
../../../src/gmxlib/nrama.c:307:10: warning: unused variable 'ePBC' [-Wunused-variable]
   int    ePBC;
          ^~~~
At top level:
../../../src/gmxlib/nrama.c:176:13: warning: 'get_dih2' defined but not used [-Wunused-function]
 static void get_dih2(t_xrama *xr,t_functype functype[],
             ^~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/nrama.h:45,
                 from ../../../src/gmxlib/nrama.c:49:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
../../../src/gmxlib/nrama.c: In function 'init_rama':
../../../src/gmxlib/nrama.c:125:21: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=]
   sprintf(buf,"%s-%d",*atoms->resname[atoms->atom[ff[1]].resnr],
                     ^
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/gmxlib/nrama.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 3 or more bytes (assuming 13) into a destination of size 12
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o network.lo ../../../src/gmxlib/network.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/network.c  -fPIC -DPIC -o .libs/network.o
../../../src/gmxlib/network.c: In function 'gmx_mpi_initialized':
../../../src/gmxlib/network.c:57:7: warning: unused variable 'n' [-Wunused-variable]
   int n;
       ^
../../../src/gmxlib/network.c: In function 'gmx_setup_nodecomm':
../../../src/gmxlib/network.c:245:40: warning: unused variable 'ni' [-Wunused-variable]
   int  n,rank,resultlen,hostnum,i,j,ng,ni;
                                        ^~
../../../src/gmxlib/network.c:245:37: warning: unused variable 'ng' [-Wunused-variable]
   int  n,rank,resultlen,hostnum,i,j,ng,ni;
                                     ^~
../../../src/gmxlib/network.c:245:35: warning: unused variable 'j' [-Wunused-variable]
   int  n,rank,resultlen,hostnum,i,j,ng,ni;
                                   ^
../../../src/gmxlib/network.c:245:33: warning: unused variable 'i' [-Wunused-variable]
   int  n,rank,resultlen,hostnum,i,j,ng,ni;
                                 ^
../../../src/gmxlib/network.c:245:25: warning: unused variable 'hostnum' [-Wunused-variable]
   int  n,rank,resultlen,hostnum,i,j,ng,ni;
                         ^~~~~~~
../../../src/gmxlib/network.c:245:15: warning: unused variable 'resultlen' [-Wunused-variable]
   int  n,rank,resultlen,hostnum,i,j,ng,ni;
               ^~~~~~~~~
../../../src/gmxlib/network.c:245:10: warning: unused variable 'rank' [-Wunused-variable]
   int  n,rank,resultlen,hostnum,i,j,ng,ni;
          ^~~~
../../../src/gmxlib/network.c:245:8: warning: unused variable 'n' [-Wunused-variable]
   int  n,rank,resultlen,hostnum,i,j,ng,ni;
        ^
../../../src/gmxlib/network.c: In function 'gmx_finalize':
../../../src/gmxlib/network.c:522:7: warning: unused variable 'ret' [-Wunused-variable]
   int ret;
       ^~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/network.c:46:
At top level:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/gmxlib/network.c:45:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nrnb.lo ../../../src/gmxlib/nrnb.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/nrnb.c  -fPIC -DPIC -o .libs/nrnb.o
../../../src/gmxlib/nrnb.c: In function 'pr_load':
../../../src/gmxlib/nrnb.c:473:3: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
   for(j=0; (j<eNRNB); j++)
   ^~~
../../../src/gmxlib/nrnb.c:476:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
     fprintf(log,"\nDetailed load balancing info in percentage of average\n");
     ^~~~~~~
In file included from ../../../src/gmxlib/nrnb.c:48:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o mshift.lo ../../../src/gmxlib/mshift.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/mshift.c  -fPIC -DPIC -o .libs/mshift.o
../../../src/gmxlib/mshift.c: In function 'compact_graph':
../../../src/gmxlib/mshift.c:243:12: warning: unused variable 'e' [-Wunused-variable]
   atom_id *e;
            ^
../../../src/gmxlib/mshift.c:242:9: warning: unused variable 'j' [-Wunused-variable]
   int i,j,n,max_nedge;
         ^
../../../src/gmxlib/mshift.c: In function 'mk_graph_ilist':
../../../src/gmxlib/mshift.c:307:13: warning: variable 'nbtot' set but not used [-Wunused-but-set-variable]
   int     i,nbtot;
             ^~~~~
In file included from ../../../src/gmxlib/mshift.c:46:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/gmxlib/mshift.c:44:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/mshift.c:44:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o mvdata.lo ../../../src/gmxlib/mvdata.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/mvdata.c  -fPIC -DPIC -o .libs/mvdata.o
../../../src/gmxlib/mvdata.c: In function 'bc_atoms':
../../../src/gmxlib/mvdata.c:147:7: warning: unused variable 'dummy' [-Wunused-variable]
   int dummy;
       ^~~~~
../../../src/gmxlib/mvdata.c: In function 'bc_groups':
../../../src/gmxlib/mvdata.c:162:7: warning: unused variable 'dummy' [-Wunused-variable]
   int dummy;
       ^~~~~
../../../src/gmxlib/mvdata.c: In function 'bc_ffparams':
../../../src/gmxlib/mvdata.c:290:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/gmxlib/mvdata.c: In function 'bc_molblock':
../../../src/gmxlib/mvdata.c:427:8: warning: unused variable 'bAlloc' [-Wunused-variable]
   bool bAlloc=TRUE;
        ^~~~~~
At top level:
../../../src/gmxlib/mvdata.c:275:13: warning: 'bc_idef' defined but not used [-Wunused-function]
 static void bc_idef(const t_commrec *cr,t_idef *idef)
             ^~~~~~~
In file included from ../../../src/gmxlib/mvdata.c:50:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/mvdata.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o pargs.lo ../../../src/gmxlib/pargs.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/pargs.c  -fPIC -DPIC -o .libs/pargs.o
../../../src/gmxlib/pargs.c: In function 'print_pargs':
../../../src/gmxlib/pargs.c:306:26: warning: unused variable 'tmp' [-Wunused-variable]
   char buf[32],buf2[256],tmp[256];
                          ^~~
../../../src/gmxlib/pargs.c:306:16: warning: unused variable 'buf2' [-Wunused-variable]
   char buf[32],buf2[256],tmp[256];
                ^~~~
../../../src/gmxlib/pargs.c:306:8: warning: unused variable 'buf' [-Wunused-variable]
   char buf[32],buf2[256],tmp[256];
        ^~~
In file included from ../../../src/gmxlib/pargs.c:51:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/pargs.c:51:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nrjac.lo ../../../src/gmxlib/nrjac.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/nrjac.c  -fPIC -DPIC -o .libs/nrjac.o
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/gmxlib/nrjac.c:44:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o rando.lo ../../../src/gmxlib/rando.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/rando.c  -fPIC -DPIC -o .libs/rando.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o random.lo ../../../src/gmxlib/random.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/random.c  -fPIC -DPIC -o .libs/random.o
../../../src/gmxlib/random.c: In function 'maxwell_speed':
../../../src/gmxlib/random.c:94:11: warning: unused variable 'i' [-Wunused-variable]
   int     i;
           ^
../../../src/gmxlib/random.c:93:12: warning: unused variable 'dummy' [-Wunused-variable]
   atom_id *dummy;
            ^~~~~
In file included from ../../../src/gmxlib/random.c:45:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/random.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o rbin.lo ../../../src/gmxlib/rbin.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/rbin.c  -fPIC -DPIC -o .libs/rbin.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o readinp.lo ../../../src/gmxlib/readinp.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/readinp.c  -fPIC -DPIC -o .libs/readinp.o
In file included from ../../../src/gmxlib/readinp.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o replace.lo ../../../src/gmxlib/replace.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/replace.c  -fPIC -DPIC -o .libs/replace.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_random.lo ../../../src/gmxlib/gmx_random.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/gmx_random.c  -fPIC -DPIC -o .libs/gmx_random.o
../../../src/gmxlib/gmx_random.c: In function 'gmx_rng_make_seed':
../../../src/gmxlib/gmx_random.c:146:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable]
   int ret;
       ^~~
../../../src/gmxlib/gmx_random.c: In function 'gmx_rng_update':
../../../src/gmxlib/gmx_random.c:168:7: warning: variable 'mti' set but not used [-Wunused-but-set-variable]
   int mti,k;
       ^~~
../../../src/gmxlib/gmx_random.c:167:16: warning: unused variable 'lastx' [-Wunused-variable]
   unsigned int lastx,x1,x2,y,*mt;
                ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o princ.lo ../../../src/gmxlib/princ.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/princ.c  -fPIC -DPIC -o .libs/princ.o
../../../src/gmxlib/princ.c:249:13: warning: 'dump_shit' defined but not used [-Wunused-function]
 static void dump_shit(FILE *out,matrix trans,rvec prcomp,real totmass)
             ^~~~~~~~~
../../../src/gmxlib/princ.c:48:13: warning: 'm_op' defined but not used [-Wunused-function]
 static void m_op(matrix mat,rvec x)
             ^~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/gmxlib/princ.c:44:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/gmxlib/princ.c:42:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/princ.c:42:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o smalloc.lo ../../../src/gmxlib/smalloc.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/smalloc.c  -fPIC -DPIC -o .libs/smalloc.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o strdb.lo ../../../src/gmxlib/strdb.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/strdb.c  -fPIC -DPIC -o .libs/strdb.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o sortwater.lo ../../../src/gmxlib/sortwater.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/sortwater.c  -fPIC -DPIC -o .libs/sortwater.o
In file included from ../../../src/gmxlib/sortwater.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/sortwater.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o pdbio.lo ../../../src/gmxlib/pdbio.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/pdbio.c  -fPIC -DPIC -o .libs/pdbio.o
In file included from ../../../src/gmxlib/pdbio.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/gmxlib/pdbio.c:44:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/pdbio.c:44:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
../../../src/gmxlib/pdbio.c: In function 'read_pdbfile':
../../../src/gmxlib/pdbio.c:570:23: warning: 'd' directive writing 1 byte into a region of size between 0 and 31 [-Wformat-overflow=]
   sprintf(format,"%s%%d",form2);
                       ^
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/gmxlib/pdbio.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 3 and 34 bytes into a destination of size 32
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/gmxlib/pdbio.c:574:27: warning: 'd' directive writing 1 byte into a region of size between 0 and 31 [-Wformat-overflow=]
       sprintf(format,"%s%%d",form2);
                           ^
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/gmxlib/pdbio.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 3 and 34 bytes into a destination of size 32
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o string2.lo ../../../src/gmxlib/string2.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/string2.c  -fPIC -DPIC -o .libs/string2.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o rmpbc.lo ../../../src/gmxlib/rmpbc.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/rmpbc.c  -fPIC -DPIC -o .libs/rmpbc.o
In file included from ../../../src/gmxlib/rmpbc.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/rmpbc.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/gmxlib/rmpbc.c:45:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o symtab.lo ../../../src/gmxlib/symtab.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/symtab.c  -fPIC -DPIC -o .libs/symtab.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o topsort.lo ../../../src/gmxlib/topsort.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/topsort.c  -fPIC -DPIC -o .libs/topsort.o
../../../src/gmxlib/topsort.c: In function 'gmx_sort_ilist_fe':
../../../src/gmxlib/topsort.c:142:10: warning: unused variable 'bPert' [-Wunused-variable]
     bool bPert;
          ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o pbc.lo ../../../src/gmxlib/pbc.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/pbc.c  -fPIC -DPIC -o .libs/pbc.o
../../../src/gmxlib/pbc.c: In function 'low_set_pbc':
../../../src/gmxlib/pbc.c:272:8: warning: unused variable 'bXY' [-Wunused-variable]
   bool bXY,bUse;
        ^~~
../../../src/gmxlib/pbc.c: In function 'put_atom_in_box':
../../../src/gmxlib/pbc.c:1300:7: warning: unused variable 'i' [-Wunused-variable]
   int i,m,d;
       ^
../../../src/gmxlib/pbc.c: In function 'put_atoms_in_box':
../../../src/gmxlib/pbc.c:1314:11: warning: unused variable 'd' [-Wunused-variable]
   int i,m,d;
           ^
../../../src/gmxlib/pbc.c:1314:9: warning: unused variable 'm' [-Wunused-variable]
   int i,m,d;
         ^
In file included from ../../../src/gmxlib/pbc.c:43:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/pbc.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o trnio.lo ../../../src/gmxlib/trnio.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/trnio.c  -fPIC -DPIC -o .libs/trnio.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o viewit.lo ../../../src/gmxlib/viewit.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/viewit.c  -fPIC -DPIC -o .libs/viewit.o
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/viewit.c:42:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o wgms.lo ../../../src/gmxlib/wgms.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/wgms.c  -fPIC -DPIC -o .libs/wgms.o
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/gmxlib/wgms.c:41:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o shift_util.lo ../../../src/gmxlib/shift_util.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/shift_util.c  -fPIC -DPIC -o .libs/shift_util.o
../../../src/gmxlib/shift_util.c: In function 'shift_LRcorrection':
../../../src/gmxlib/shift_util.c:257:10: warning: unused variable 'shift' [-Wunused-variable]
   ivec   shift;
          ^~~~~
../../../src/gmxlib/shift_util.c:253:42: warning: unused variable 'qtot' [-Wunused-variable]
   real   qi,dr,dr2,dr_1,dr_3,fscal,Vexcl,qtot=0;
                                          ^~~~
../../../src/gmxlib/shift_util.c:252:10: warning: unused variable 'isp' [-Wunused-variable]
   double isp=0.564189583547756;
          ^~~
At top level:
../../../src/gmxlib/shift_util.c:370:13: warning: 'rgbset' defined but not used [-Wunused-function]
 static real rgbset(real col)
             ^~~~~~
In file included from ../../../src/gmxlib/shift_util.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/shift_util.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o typedefs.lo ../../../src/gmxlib/typedefs.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/typedefs.c  -fPIC -DPIC -o .libs/typedefs.o
../../../src/gmxlib/typedefs.c: In function 'init_block':
../../../src/gmxlib/typedefs.c:64:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/gmxlib/typedefs.c: In function 'init_blocka':
../../../src/gmxlib/typedefs.c:74:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/gmxlib/typedefs.c: In function 'init_atom':
../../../src/gmxlib/typedefs.c:87:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/gmxlib/typedefs.c: In function 'init_top':
../../../src/gmxlib/typedefs.c:135:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/gmxlib/typedefs.c: In function 'done_top':
../../../src/gmxlib/typedefs.c:284:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/gmxlib/typedefs.c: In function 'init_state':
../../../src/gmxlib/typedefs.c:386:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
In file included from ../../../src/gmxlib/typedefs.c:43:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/typedefs.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o xdrd.lo ../../../src/gmxlib/xdrd.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/xdrd.c  -fPIC -DPIC -o .libs/xdrd.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o statutil.lo ../../../src/gmxlib/statutil.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/statutil.c  -fPIC -DPIC -o .libs/statutil.o
../../../src/gmxlib/statutil.c: In function 'check_times2':
../../../src/gmxlib/statutil.c:152:8: warning: variable 'margin' set but not used [-Wunused-but-set-variable]
   real margin;
        ^~~~~~
../../../src/gmxlib/statutil.c: In function 'parse_common_args':
../../../src/gmxlib/statutil.c:528:14: warning: unused variable 'newdesc' [-Wunused-variable]
   char *ptr,*newdesc;
              ^~~~~~~
../../../src/gmxlib/statutil.c:528:9: warning: unused variable 'ptr' [-Wunused-variable]
   char *ptr,*newdesc;
         ^~~
../../../src/gmxlib/statutil.c:491:11: warning: unused variable 'npri_pa' [-Wunused-variable]
   t_pargs npri_pa   = { "-npri", FALSE, etINT,   {&npri},
           ^~~~~~~
../../../src/gmxlib/statutil.c:485:27: warning: unused variable 'mantp' [-Wunused-variable]
   static int  nicelevel=0,mantp=0,npri=0,debug_level=0;
                           ^~~~~
At top level:
../../../src/gmxlib/statutil.c:485:27: warning: 'mantp' defined but not used [-Wunused-variable]
../../../src/gmxlib/statutil.c:361:13: warning: 'pdesc' defined but not used [-Wunused-function]
 static void pdesc(char *desc)
             ^~~~~
../../../src/gmxlib/statutil.c:73:14: warning: 'timelabel' defined but not used [-Wunused-variable]
 static char *timelabel     = NULL;
              ^~~~~~~~~
In file included from ../../../src/gmxlib/statutil.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/statutil.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/statutil.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o trxio.lo ../../../src/gmxlib/trxio.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/trxio.c  -fPIC -DPIC -o .libs/trxio.o
In file included from ../../../src/gmxlib/trxio.c:53:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/gmxlib/trxio.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/trxio.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/trxio.c:45:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o writeps.lo ../../../src/gmxlib/writeps.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/writeps.c  -fPIC -DPIC -o .libs/writeps.o
In file included from ../../../src/gmxlib/writeps.c:43:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o xtcio.lo ../../../src/gmxlib/xtcio.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/xtcio.c  -fPIC -DPIC -o .libs/xtcio.o
In file included from ../../../src/gmxlib/xtcio.c:46:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/xtcio.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o txtdump.lo ../../../src/gmxlib/txtdump.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/txtdump.c  -fPIC -DPIC -o .libs/txtdump.o
../../../src/gmxlib/txtdump.c: In function 'pr_qm_opts':
../../../src/gmxlib/txtdump.c:339:11: warning: unused variable 'j' [-Wunused-variable]
   int i,m,j;
           ^
../../../src/gmxlib/txtdump.c:339:9: warning: unused variable 'm' [-Wunused-variable]
   int i,m,j;
         ^
../../../src/gmxlib/txtdump.c:339:7: warning: unused variable 'i' [-Wunused-variable]
   int i,m,j;
       ^
../../../src/gmxlib/txtdump.c: In function 'pr_ffparams':
../../../src/gmxlib/txtdump.c:906:9: warning: unused variable 'j' [-Wunused-variable]
   int i,j;
         ^
../../../src/gmxlib/txtdump.c: In function 'pr_block_title':
../../../src/gmxlib/txtdump.c:950:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/gmxlib/txtdump.c: In function 'pr_blocka_title':
../../../src/gmxlib/txtdump.c:963:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/gmxlib/txtdump.c: In function 'pr_block':
../../../src/gmxlib/txtdump.c:1016:9: warning: unused variable 'j' [-Wunused-variable]
   int i,j,ok,size,start,end;
         ^
../../../src/gmxlib/txtdump.c: In function 'pr_atom':
../../../src/gmxlib/txtdump.c:1120:9: warning: unused variable 'j' [-Wunused-variable]
   int i,j;
         ^
../../../src/gmxlib/txtdump.c: In function 'pr_groups':
../../../src/gmxlib/txtdump.c:1151:9: warning: unused variable 'grpnr' [-Wunused-variable]
     int grpnr[egcNR];
         ^~~~~
At top level:
../../../src/gmxlib/txtdump.c:976:13: warning: 'low_pr_block' defined but not used [-Wunused-function]
 static void low_pr_block(FILE *fp,int indent,const char *title,t_block *block, bool bShowNumbers)
             ^~~~~~~~~~~~
In file included from ../../../src/gmxlib/txtdump.c:51:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/txtdump.c:51:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o xvgr.lo ../../../src/gmxlib/xvgr.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/xvgr.c  -fPIC -DPIC -o .libs/xvgr.o
../../../src/gmxlib/xvgr.c: In function 'use_xmgr':
../../../src/gmxlib/xvgr.c:56:8: warning: unused variable 'bXMGR' [-Wunused-variable]
   bool bXMGR;
        ^~~~~
../../../src/gmxlib/xvgr.c: In function 'read_xvg_time':
../../../src/gmxlib/xvgr.c:402:14: warning: unused variable 'tend' [-Wunused-variable]
   double dbl,tend=0;
              ^~~~
In file included from ../../../src/gmxlib/xvgr.c:50:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/xvgr.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/gmxlib/xvgr.c:46:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/xvgr.c:45:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o tcontrol.lo ../../../src/gmxlib/tcontrol.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/tcontrol.c  -fPIC -DPIC -o .libs/tcontrol.o
../../../src/gmxlib/tcontrol.c:61:22: warning: 'timeconvert' defined but not used [-Wunused-variable]
 static t_timeconvert timeconvert[] = {
                      ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/tcontrol.c:41:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_cyclecounter.lo ../../../src/gmxlib/gmx_cyclecounter.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/gmx_cyclecounter.c  -fPIC -DPIC -o .libs/gmx_cyclecounter.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dihres.lo ../../../src/gmxlib/dihres.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/dihres.c  -fPIC -DPIC -o .libs/dihres.o
../../../src/gmxlib/dihres.c: In function 'ta_dihres':
../../../src/gmxlib/dihres.c:77:30: warning: unused variable 'dp2' [-Wunused-variable]
   real phi0,phi,ddphi,ddp,dp,dp2,dphi,kfac,cos_phi,sign,d2r,fc;
                              ^~~
../../../src/gmxlib/dihres.c:76:29: warning: unused variable 'typep' [-Wunused-variable]
   int  ai,aj,ak,al,i,k,type,typep,label,power,t1,t2,t3;
                             ^~~~~
In file included from ../../../src/gmxlib/dihres.c:51:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/gmxlib/dihres.c:46:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/dihres.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o wman.lo ../../../src/gmxlib/wman.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/wman.c  -fPIC -DPIC -o .libs/wman.o
../../../src/gmxlib/wman.c: In function 'mydate':
../../../src/gmxlib/wman.c:168:15: warning: unused variable 'num' [-Wunused-variable]
   const char *num[] = { "01", "02", "03", "04", "05", "06","07", "08", "09" };
               ^~~
../../../src/gmxlib/wman.c: In function 'print_tty_formatted':
../../../src/gmxlib/wman.c:510:16: warning: unused variable 'j' [-Wunused-variable]
   int buflen,i,j;
                ^
../../../src/gmxlib/wman.c: In function 'write_wikiman':
../../../src/gmxlib/wman.c:631:14: warning: unused variable 'tmp2' [-Wunused-variable]
   char *tmp,*tmp2;
              ^~~~
../../../src/gmxlib/wman.c:630:17: warning: unused variable 'link' [-Wunused-variable]
   char buf[256],link[10];
                 ^~~~
../../../src/gmxlib/wman.c: In function 'write_htmlman':
../../../src/gmxlib/wman.c:682:8: warning: unused variable 'link' [-Wunused-variable]
   char link[10],tmp[255];
        ^~~~
../../../src/gmxlib/wman.c: In function 'write_xmlman':
../../../src/gmxlib/wman.c:788:7: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
       if (strcmp(link,"???")==0)
       ^~
../../../src/gmxlib/wman.c:790:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
         if (fnm[i].opt[0]=='-') strcpy(opt,fnm[i].opt+1);
         ^~
../../../src/gmxlib/wman.c: In function 'write_py':
../../../src/gmxlib/wman.c:925:8: warning: unused variable 'bHidden' [-Wunused-variable]
   bool bHidden;
        ^~~~~~~
In file included from ../../../src/gmxlib/wman.c:48:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o libxdrf.lo ../../../src/gmxlib/libxdrf.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/libxdrf.c  -fPIC -DPIC -o .libs/libxdrf.o
In file included from ../../../include/xdrf.h:41,
                 from ../../../src/gmxlib/libxdrf.c:46:
../../../src/gmxlib/libxdrf.c:145:10: warning: return type defaults to 'int' [-Wimplicit-int]
 F77_FUNC(xdrfshort,XDRFSHORT)(int *xdrid, short *sp, int *ret)
          ^~~~~~~~~
../../src/config.h:28:29: note: in definition of macro 'F77_FUNC'
 #define F77_FUNC(name,NAME) name ## _
                             ^~~~
../../../src/gmxlib/libxdrf.c: In function 'xdr3dfcoord':
../../../src/gmxlib/libxdrf.c:705:9: warning: unused variable 'rc' [-Wunused-variable]
     int rc;
         ^~
../../../src/gmxlib/libxdrf.c: In function 'xtc_get_next_frame_start':
../../../src/gmxlib/libxdrf.c:1374:9: warning: unused variable 'inp' [-Wunused-variable]
     int inp;
         ^~~
../../../src/gmxlib/libxdrf.c: In function 'xdr_xtc_seek_time':
../../../src/gmxlib/libxdrf.c:1522:9: warning: unused variable 'res' [-Wunused-variable]
     int res;
         ^~~
../../../src/gmxlib/libxdrf.c: In function 'xtc_get_last_frame_number':
../../../src/gmxlib/libxdrf.c:1691:9: warning: unused variable 'res' [-Wunused-variable]
     int res;
         ^~~
../../../src/gmxlib/libxdrf.c: In function 'xdrfshort_':
../../../src/gmxlib/libxdrf.c:149:1: warning: control reaches end of non-void function [-Wreturn-type]
 }
 ^
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/libxdrf.c:45:
At top level:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o splitter.lo ../../../src/gmxlib/splitter.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/splitter.c  -fPIC -DPIC -o .libs/splitter.o
../../../src/gmxlib/splitter.c: In function 'split_force2':
../../../src/gmxlib/splitter.c:112:17: warning: variable 'type' set but not used [-Wunused-but-set-variable]
   int     i,j,k,type,nodeid,nratoms,tnr;
                 ^~~~
../../../src/gmxlib/splitter.c:112:13: warning: unused variable 'j' [-Wunused-variable]
   int     i,j,k,type,nodeid,nratoms,tnr;
             ^
../../../src/gmxlib/splitter.c: In function 'mk_border':
../../../src/gmxlib/splitter.c:244:14: warning: unused variable 'j' [-Wunused-variable]
   int      i,j,is,ic,ns,nc,nbor;
              ^
../../../src/gmxlib/splitter.c: In function 'split_blocks':
../../../src/gmxlib/splitter.c:316:11: warning: unused variable 'bSHK' [-Wunused-variable]
   bool    bSHK;
           ^~~~
../../../src/gmxlib/splitter.c:312:19: warning: unused variable 'last_shk' [-Wunused-variable]
   int      nodeid,last_shk,nbor;
                   ^~~~~~~~
../../../src/gmxlib/splitter.c:311:17: warning: unused variable 'ai' [-Wunused-variable]
   int      i,ii,ai,b0,b1;
                 ^~
../../../src/gmxlib/splitter.c:311:14: warning: unused variable 'ii' [-Wunused-variable]
   int      i,ii,ai,b0,b1;
              ^~
../../../src/gmxlib/splitter.c: In function 'merge_sid':
../../../src/gmxlib/splitter.c:556:8: warning: unused variable 'nChanged' [-Wunused-variable]
   int  nChanged;
        ^~~~~~~~
../../../src/gmxlib/splitter.c: In function 'gen_sblocks':
../../../src/gmxlib/splitter.c:654:11: warning: unused variable 'isid' [-Wunused-variable]
   int     isid,nsid;
           ^~~~
../../../src/gmxlib/splitter.c:652:27: warning: unused variable 'n' [-Wunused-variable]
   int     i,i0,j,k,istart,n;
                           ^
../../../src/gmxlib/splitter.c:652:20: warning: unused variable 'istart' [-Wunused-variable]
   int     i,i0,j,k,istart,n;
                    ^~~~~~
../../../src/gmxlib/splitter.c:652:18: warning: unused variable 'k' [-Wunused-variable]
   int     i,i0,j,k,istart,n;
                  ^
../../../src/gmxlib/splitter.c:652:16: warning: unused variable 'j' [-Wunused-variable]
   int     i,i0,j,k,istart,n;
                ^
../../../src/gmxlib/splitter.c: In function 'split_top':
../../../src/gmxlib/splitter.c:755:21: warning: unused variable 'minidx' [-Wunused-variable]
   int minhome,ihome,minidx;
                     ^~~~~~
../../../src/gmxlib/splitter.c:755:15: warning: unused variable 'ihome' [-Wunused-variable]
   int minhome,ihome,minidx;
               ^~~~~
../../../src/gmxlib/splitter.c:755:7: warning: unused variable 'minhome' [-Wunused-variable]
   int minhome,ihome,minidx;
       ^~~~~~~
../../../src/gmxlib/splitter.c:754:14: warning: unused variable 'ia' [-Wunused-variable]
   t_iatom   *ia;
              ^~
../../../src/gmxlib/splitter.c:753:31: warning: unused variable 'nrd' [-Wunused-variable]
   int ftype,nvsite_constr,nra,nrd;
                               ^~~
../../../src/gmxlib/splitter.c:753:27: warning: unused variable 'nra' [-Wunused-variable]
   int ftype,nvsite_constr,nra,nrd;
                           ^~~
../../../src/gmxlib/splitter.c:753:13: warning: unused variable 'nvsite_constr' [-Wunused-variable]
   int ftype,nvsite_constr,nra,nrd;
             ^~~~~~~~~~~~~
../../../src/gmxlib/splitter.c:753:7: warning: unused variable 'ftype' [-Wunused-variable]
   int ftype,nvsite_constr,nra,nrd;
       ^~~~~
../../../src/gmxlib/splitter.c:748:59: warning: unused variable 'nodeid' [-Wunused-variable]
   int     natoms,i,j,k,mj,atom,maxatom,sstart,send,bstart,nodeid;
                                                           ^~~~~~
../../../src/gmxlib/splitter.c:748:52: warning: unused variable 'bstart' [-Wunused-variable]
   int     natoms,i,j,k,mj,atom,maxatom,sstart,send,bstart,nodeid;
                                                    ^~~~~~
../../../src/gmxlib/splitter.c:748:47: warning: unused variable 'send' [-Wunused-variable]
   int     natoms,i,j,k,mj,atom,maxatom,sstart,send,bstart,nodeid;
                                               ^~~~
../../../src/gmxlib/splitter.c:748:40: warning: unused variable 'sstart' [-Wunused-variable]
   int     natoms,i,j,k,mj,atom,maxatom,sstart,send,bstart,nodeid;
                                        ^~~~~~
../../../src/gmxlib/splitter.c:748:32: warning: unused variable 'maxatom' [-Wunused-variable]
   int     natoms,i,j,k,mj,atom,maxatom,sstart,send,bstart,nodeid;
                                ^~~~~~~
../../../src/gmxlib/splitter.c:748:18: warning: unused variable 'i' [-Wunused-variable]
   int     natoms,i,j,k,mj,atom,maxatom,sstart,send,bstart,nodeid;
                  ^
At top level:
../../../src/gmxlib/splitter.c:726:17: warning: 'block2blocka' defined but not used [-Wunused-function]
 static t_blocka block2blocka(t_block *block)
                 ^~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o tpxio.lo ../../../src/gmxlib/tpxio.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/tpxio.c  -fPIC -DPIC -o .libs/tpxio.o
../../../src/gmxlib/tpxio.c: In function 'do_ilist':
../../../src/gmxlib/tpxio.c:987:10: warning: unused variable 'k' [-Wunused-variable]
   int  i,k,idum;
          ^
../../../src/gmxlib/tpxio.c: In function 'do_ffparams':
../../../src/gmxlib/tpxio.c:1008:15: warning: unused variable 'j' [-Wunused-variable]
   int  idum,i,j,k;
               ^
../../../src/gmxlib/tpxio.c: In function 'do_ilists':
../../../src/gmxlib/tpxio.c:1061:8: warning: unused variable 'bDum' [-Wunused-variable]
   bool bDum=TRUE,bClear;
        ^~~~
../../../src/gmxlib/tpxio.c:1060:13: warning: unused variable 'renum' [-Wunused-variable]
   int i,j,k,renum[F_NRE];
             ^~~~~
../../../src/gmxlib/tpxio.c:1060:7: warning: unused variable 'i' [-Wunused-variable]
   int i,j,k,renum[F_NRE];
       ^
../../../src/gmxlib/tpxio.c: In function 'do_groups':
../../../src/gmxlib/tpxio.c:1276:10: warning: unused variable 'n' [-Wunused-variable]
   int  g,n,i;
          ^
../../../src/gmxlib/tpxio.c: In function 'do_moltype':
../../../src/gmxlib/tpxio.c:1393:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/gmxlib/tpxio.c: In function 'do_molblock':
../../../src/gmxlib/tpxio.c:1420:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/gmxlib/tpxio.c: In function 'do_mtop':
../../../src/gmxlib/tpxio.c:1547:14: warning: unused variable 'i' [-Wunused-variable]
   int  mt,mb,i;
              ^
../../../src/gmxlib/tpxio.c: In function 'read_tpx_top':
../../../src/gmxlib/tpxio.c:2005:15: warning: unused variable 'ltop' [-Wunused-variable]
   t_topology *ltop;
               ^~~~
../../../src/gmxlib/tpxio.c: In function 'read_tps_conf':
../../../src/gmxlib/tpxio.c:2035:17: warning: unused variable 'topconv' [-Wunused-variable]
   t_topology   *topconv;
                 ^~~~~~~
In file included from ../../../src/gmxlib/tpxio.c:61:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/tpxio.c:61:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/gmxlib/tpxio.c:60:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_arpack.lo ../../../src/gmxlib/gmx_arpack.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/gmx_arpack.c  -fPIC -DPIC -o .libs/gmx_arpack.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -version-info 5:0:0 -lgslcblas  -o libgmx_d.la -rpath /usr/lib 3dview.lo atomprop.lo bondfree.lo calcgrid.lo calch.lo checkpoint.lo confio.lo copyrite.lo disre.lo do_fit.lo enxio.lo ewald_util.lo gmx_fatal.lo ffscanf.lo filenm.lo futil.lo gbutil.lo gmxfio.lo ifunc.lo index.lo cinvsqrtdata.lo invblock.lo macros.lo orires.lo sparsematrix.lo main.lo maths.lo matio.lo mshift.lo mtop_util.lo mtxio.lo mvdata.lo names.lo network.lo nrama.lo nrjac.lo nrnb.lo pargs.lo pbc.lo pdbio.lo princ.lo rando.lo random.lo gmx_random.lo rbin.lo readinp.lo replace.lo rmpbc.lo shift_util.lo sortwater.lo smalloc.lo statutil.lo strdb.lo string2.lo symtab.lo topsort.lo tpxio.lo trnio.lo trxio.lo txtdump.lo typedefs.lo viewit.lo wgms.lo wman.lo writeps.lo xdrd.lo xtcio.lo xvgr.lo libxdrf.lo gmx_arpack.lo dihres.lo tcontrol.lo splitter.lo gmx_cyclecounter.lo nonbonded/libnonbonded.la gmx_blas/libblas.la        gmx_lapack/liblapack.la -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
i586-alt-linux-gcc -shared  .libs/3dview.o .libs/atomprop.o .libs/bondfree.o .libs/calcgrid.o .libs/calch.o .libs/checkpoint.o .libs/confio.o .libs/copyrite.o .libs/disre.o .libs/do_fit.o .libs/enxio.o .libs/ewald_util.o .libs/gmx_fatal.o .libs/ffscanf.o .libs/filenm.o .libs/futil.o .libs/gbutil.o .libs/gmxfio.o .libs/ifunc.o .libs/index.o .libs/cinvsqrtdata.o .libs/invblock.o .libs/macros.o .libs/orires.o .libs/sparsematrix.o .libs/main.o .libs/maths.o .libs/matio.o .libs/mshift.o .libs/mtop_util.o .libs/mtxio.o .libs/mvdata.o .libs/names.o .libs/network.o .libs/nrama.o .libs/nrjac.o .libs/nrnb.o .libs/pargs.o .libs/pbc.o .libs/pdbio.o .libs/princ.o .libs/rando.o .libs/random.o .libs/gmx_random.o .libs/rbin.o .libs/readinp.o .libs/replace.o .libs/rmpbc.o .libs/shift_util.o .libs/sortwater.o .libs/smalloc.o .libs/statutil.o .libs/strdb.o .libs/string2.o .libs/symtab.o .libs/topsort.o .libs/tpxio.o .libs/trnio.o .libs/trxio.o .libs/txtdump.o .libs/typedefs.o .libs/viewit.o .libs/wgms.o .libs/wman.o .libs/writeps.o .libs/xdrd.o .libs/xtcio.o .libs/xvgr.o .libs/libxdrf.o .libs/gmx_arpack.o .libs/dihres.o .libs/tcontrol.o .libs/splitter.o .libs/gmx_cyclecounter.o -Wl,--whole-archive nonbonded/.libs/libnonbonded.a gmx_blas/.libs/libblas.a gmx_lapack/.libs/liblapack.a -Wl,--no-whole-archive  -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lgslcblas -lgsl -lfftw3 -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath  -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wl,-soname -Wl,libgmx_d.so.5 -o .libs/libgmx_d.so.5.0.0
(cd .libs && rm -f libgmx_d.so.5 && ln -s libgmx_d.so.5.0.0 libgmx_d.so.5)
(cd .libs && rm -f libgmx_d.so && ln -s libgmx_d.so.5.0.0 libgmx_d.so)
creating libgmx_d.la
(cd .libs && rm -f libgmx_d.la && ln -s ../libgmx_d.la libgmx_d.la)
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
Making all in mdlib
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o calcmu.lo ../../../src/mdlib/calcmu.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/calcmu.c  -fPIC -DPIC -o .libs/calcmu.o
In file included from ../../../src/mdlib/calcmu.c:45:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/calcmu.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o domdec_network.lo ../../../src/mdlib/domdec_network.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/domdec_network.c  -fPIC -DPIC -o .libs/domdec_network.o
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o calcvir.lo ../../../src/mdlib/calcvir.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/calcvir.c  -fPIC -DPIC -o .libs/calcvir.o
../../../src/mdlib/calcvir.c:160:13: warning: 'lo_fcv2' defined but not used [-Wunused-function]
 static void lo_fcv2(int i0,int i1,
             ^~~~~~~
../../../src/mdlib/calcvir.c:47:13: warning: 'dprod1' defined but not used [-Wunused-function]
 static void dprod1(rvec vir,real x,rvec f)
             ^~~~~~
In file included from ../../../src/mdlib/calcvir.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/calcvir.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/mdlib/calcvir.c:42:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o domdec_setup.lo ../../../src/mdlib/domdec_setup.c
mkdir .libs
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/domdec_setup.c  -fPIC -DPIC -o .libs/domdec_setup.o
../../../src/mdlib/domdec_setup.c: In function 'guess_npme':
../../../src/mdlib/domdec_setup.c:83:13: warning: unused variable 'try' [-Wunused-variable]
  t_inputrec try;
             ^~~
../../../src/mdlib/domdec_setup.c:82:16: warning: unused variable 'nky' [-Wunused-variable]
  int  npme,nkx,nky,ndiv,*div,*mdiv,ldiv;
                ^~~
../../../src/mdlib/domdec_setup.c:82:12: warning: unused variable 'nkx' [-Wunused-variable]
  int  npme,nkx,nky,ndiv,*div,*mdiv,ldiv;
            ^~~
../../../src/mdlib/domdec_setup.c: In function 'assign_factors':
../../../src/mdlib/domdec_setup.c:329:13: warning: unused variable 'z' [-Wunused-variable]
     int x,y,z,i;
             ^
../../../src/mdlib/domdec_setup.c: In function 'dd_choose_grid':
../../../src/mdlib/domdec_setup.c:493:19: warning: unused variable 'nky' [-Wunused-variable]
     int  npme,nkx,nky;
                   ^~~
../../../src/mdlib/domdec_setup.c:493:15: warning: unused variable 'nkx' [-Wunused-variable]
     int  npme,nkx,nky;
               ^~~
../../../src/mdlib/domdec_setup.c:493:10: warning: unused variable 'npme' [-Wunused-variable]
     int  npme,nkx,nky;
          ^~~~
In file included from ../../../src/mdlib/domdec_setup.c:32:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/domdec_setup.c:32:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/pme.h:46,
                 from ../../../src/mdlib/domdec_setup.c:29:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o ebin.lo ../../../src/mdlib/ebin.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/ebin.c  -fPIC -DPIC -o .libs/ebin.o
../../../src/mdlib/ebin.c: In function 'add_ebin':
../../../src/mdlib/ebin.c:89:18: warning: unused variable 'sigma' [-Wunused-variable]
   double   e,sum,sigma,invmm,diff;
                  ^~~~~
../../../src/mdlib/ebin.c:89:14: warning: unused variable 'sum' [-Wunused-variable]
   double   e,sum,sigma,invmm,diff;
              ^~~
In file included from ../../../src/mdlib/ebin.c:51:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/mdlib/ebin.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o domdec_con.lo ../../../src/mdlib/domdec_con.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/domdec_con.c  -fPIC -DPIC -o .libs/domdec_con.o
../../../src/mdlib/domdec_con.c: In function 'dd_make_local_vsites':
../../../src/mdlib/domdec_con.c:925:25: warning: unused variable 'gat' [-Wunused-variable]
     int  ftype,nral,i,j,gat,a;
                         ^~~
../../../src/mdlib/domdec_con.c: In function 'init_domdec_vsites':
../../../src/mdlib/domdec_con.c:1047:31: warning: unused variable 'dc' [-Wunused-variable]
     gmx_domdec_constraints_t *dc;
                               ^~
In file included from ../../../src/mdlib/domdec_con.c:25:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/domdec_con.c:25:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o fftgrid.lo ../../../src/mdlib/fftgrid.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/fftgrid.c  -fPIC -DPIC -o .libs/fftgrid.o
../../../src/mdlib/fftgrid.c: In function 'mk_fftgrid':
../../../src/mdlib/fftgrid.c:97:25: warning: unused variable 'maxlocalsize' [-Wunused-variable]
     int           x1,y1,maxlocalsize;
                         ^~~~~~~~~~~~
In file included from ../../../include/fftgrid.h:46,
                 from ../../../src/mdlib/fftgrid.c:51:
At top level:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o ewald.lo ../../../src/mdlib/ewald.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/ewald.c  -fPIC -DPIC -o .libs/ewald.o
In file included from ../../../src/mdlib/ewald.c:44:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/mdlib/ewald.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/ewald.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o ghat.lo ../../../src/mdlib/ghat.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/ghat.c  -fPIC -DPIC -o .libs/ghat.o
In file included from ../../../include/pppm.h:46,
                 from ../../../src/mdlib/ghat.c:47:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/mdlib/ghat.c:44:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/ghat.c:44:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o init.lo ../../../src/mdlib/init.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/init.c  -fPIC -DPIC -o .libs/init.o
In file included from ../../../include/statutil.h:51,
                 from ../../../src/mdlib/init.c:52:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../include/mdrun.h:50,
                 from ../../../src/mdlib/init.c:51:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/init.c:44:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/init.c:44:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o coupling.lo ../../../src/mdlib/coupling.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/coupling.c  -fPIC -DPIC -o .libs/coupling.o
../../../src/mdlib/coupling.c: In function 'berendsen_pcoupl':
../../../src/mdlib/coupling.c:267:11: warning: unused variable 'ptr' [-Wunused-variable]
   char   *ptr,buf[STRLEN];
           ^~~
In file included from ../../../include/pull.h:44,
                 from ../../../include/update.h:49,
                 from ../../../src/mdlib/coupling.c:42:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../include/pull.h:44,
                 from ../../../include/update.h:49,
                 from ../../../src/mdlib/coupling.c:42:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/update.h:48,
                 from ../../../src/mdlib/coupling.c:42:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o edsam.lo ../../../src/mdlib/edsam.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/edsam.c  -fPIC -DPIC -o .libs/edsam.o
../../../src/mdlib/edsam.c:983:13: warning: 'get_flood_energies' defined but not used [-Wunused-function]
 static void get_flood_energies(t_edpar *edi, real Vfl[],int nnames)
             ^~~~~~~~~~~~~~~~~~
../../../src/mdlib/edsam.c:964:13: warning: 'get_flood_enx_names' defined but not used [-Wunused-function]
 static void get_flood_enx_names(t_edpar *edi, char** names, int *nnames)  /* get header of energies */
             ^~~~~~~~~~~~~~~~~~~
../../../src/mdlib/edsam.c:459:13: warning: 'dump_mat' defined but not used [-Wunused-function]
 static void dump_mat(FILE* out, int dim, double** mat)
             ^~~~~~~~
../../../src/mdlib/edsam.c:448:13: warning: 'dump_rvec' defined but not used [-Wunused-function]
 static void dump_rvec(FILE *out, int dim, rvec *x)
             ^~~~~~~~~
../../../src/mdlib/edsam.c:439:13: warning: 'dump_rotmat' defined but not used [-Wunused-function]
 static void dump_rotmat(FILE* out,matrix rotmat)
             ^~~~~~~~~~~
../../../src/mdlib/edsam.c:387:13: warning: 'dump_edi' defined but not used [-Wunused-function]
 static void dump_edi(t_edpar *edpars, t_commrec *cr, int nr_edi)
             ^~~~~~~~
../../../src/mdlib/edsam.c:316:13: warning: 'dump_xcoll' defined but not used [-Wunused-function]
 static void dump_xcoll(t_edpar *edi, struct t_do_edsam *buf, t_commrec *cr, int step)
             ^~~~~~~~~~
In file included from ../../../include/mdrun.h:50,
                 from ../../../src/mdlib/edsam.c:53:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/edsam.c:49:
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/edsam.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o mdatom.lo ../../../src/mdlib/mdatom.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/mdatom.c  -fPIC -DPIC -o .libs/mdatom.o
../../../src/mdlib/mdatom.c: In function 'init_mdatoms':
../../../src/mdlib/mdatom.c:56:12: warning: unused variable 'ilist' [-Wunused-variable]
   t_ilist *ilist;
            ^~~~~
../../../src/mdlib/mdatom.c:51:17: warning: unused variable 'nmol' [-Wunused-variable]
   int    mb,a,g,nmol;
                 ^~~~
../../../src/mdlib/mdatom.c:51:15: warning: unused variable 'g' [-Wunused-variable]
   int    mb,a,g,nmol;
               ^
../../../src/mdlib/mdatom.c:51:10: warning: unused variable 'mb' [-Wunused-variable]
   int    mb,a,g,nmol;
          ^~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o constr.lo ../../../src/mdlib/constr.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/constr.c  -fPIC -DPIC -o .libs/constr.o
../../../src/mdlib/constr.c: In function 'too_many_constraint_warnings':
../../../src/mdlib/constr.c:132:9: warning: unused variable 'abort' [-Wunused-variable]
   char *abort="- aborting to avoid logfile runaway.\n"
         ^~~~~
../../../src/mdlib/constr.c: In function 'constrain':
../../../src/mdlib/constr.c:234:11: warning: unused variable 'ncons' [-Wunused-variable]
   int     ncons,error;
           ^~~~~
../../../src/mdlib/constr.c: In function 'init_constraints':
../../../src/mdlib/constr.c:772:37: warning: unused variable 'natoms' [-Wunused-variable]
   int  ncon,nset,nmol,settle_type,i,natoms,mt,nflexcon;
                                     ^~~~~~
../../../src/mdlib/constr.c: In function 'inter_charge_group_constraints':
../../../src/mdlib/constr.c:903:8: warning: unused variable 'nat' [-Wunused-variable]
   int  nat,*at2cg,cg,a,i;
        ^~~
At top level:
../../../src/mdlib/constr.c:110:12: warning: 'icomp' defined but not used [-Wunused-function]
 static int icomp(const void *p1, const void *p2)
            ^~~~~
In file included from ../../../src/mdlib/constr.c:53:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
In file included from ../../../include/pull.h:44,
                 from ../../../include/mdrun.h:56,
                 from ../../../src/mdlib/constr.c:45:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../include/pull.h:44,
                 from ../../../include/mdrun.h:56,
                 from ../../../src/mdlib/constr.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/mdrun.h:50,
                 from ../../../src/mdlib/constr.c:45:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/constr.c:42:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o mdebin.lo ../../../src/mdlib/mdebin.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/mdebin.c  -fPIC -DPIC -o .libs/mdebin.o
../../../src/mdlib/mdebin.c: In function 'print_ebin':
../../../src/mdlib/mdebin.c:530:31: warning: unused variable 'nor' [-Wunused-variable]
   int         i,j,n,ni,nj,ndr,nor;
                               ^~~
../../../src/mdlib/mdebin.c:530:27: warning: unused variable 'ndr' [-Wunused-variable]
   int         i,j,n,ni,nj,ndr,nor;
                           ^~~
In file included from ../../../src/mdlib/mdebin.c:48:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/mdebin.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o mvxvf.lo ../../../src/mdlib/mvxvf.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/mvxvf.c  -fPIC -DPIC -o .libs/mvxvf.o
In file included from ../../../src/mdlib/mvxvf.c:52:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/mvxvf.c:52:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o force.lo ../../../src/mdlib/force.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/force.c  -fPIC -DPIC -o .libs/force.o
../../../src/mdlib/force.c: In function 'check_solvent_cg':
../../../src/mdlib/force.c:162:23: warning: unused variable 'excl' [-Wunused-variable]
     const t_blocka *  excl;
                       ^~~~
../../../src/mdlib/force.c: In function 'check_solvent':
../../../src/mdlib/force.c:406:23: warning: variable 'mols' set but not used [-Wunused-but-set-variable]
     const t_block *   mols;
                       ^~~~
../../../src/mdlib/force.c: In function 'set_avcsixtwelve':
../../../src/mdlib/force.c:687:46: warning: unused variable 'n' [-Wunused-variable]
     int    mb,nmol,nmolc,i,j,tpi,tpj,j1,j2,k,n,nexcl,q;
                                              ^
../../../src/mdlib/force.c: In function 'init_forcerec':
../../../src/mdlib/force.c:1048:16: warning: variable 'nbl' set but not used [-Wunused-but-set-variable]
     t_nblists *nbl;
                ^~~
../../../src/mdlib/force.c:1043:26: warning: unused variable 'ngrp' [-Wunused-variable]
     int     i,j,m,natoms,ngrp,negp_pp,negptable,egi,egj;
                          ^~~~
../../../src/mdlib/force.c:1043:15: warning: unused variable 'j' [-Wunused-variable]
     int     i,j,m,natoms,ngrp,negp_pp,negptable,egi,egj;
               ^
../../../src/mdlib/force.c: In function 'do_force_lowlevel':
../../../src/mdlib/force.c:1549:20: warning: unused variable 'timesteps' [-Wunused-variable]
     static int     timesteps=0;
                    ^~~~~~~~~
../../../src/mdlib/force.c:1548:32: warning: unused variable 't_wait' [-Wunused-variable]
     static double  t_fnbf=0.0, t_wait=0.0;
                                ^~~~~~
../../../src/mdlib/force.c:1548:20: warning: unused variable 't_fnbf' [-Wunused-variable]
     static double  t_fnbf=0.0, t_wait=0.0;
                    ^~~~~~
../../../src/mdlib/force.c:1540:13: warning: unused variable 'bDoEpot' [-Wunused-variable]
     bool    bDoEpot,bSepDVDL,bSB;
             ^~~~~~~
../../../src/mdlib/force.c:1539:15: warning: unused variable 'nit' [-Wunused-variable]
     int     i,nit,status;
               ^~~
At top level:
../../../src/mdlib/force.c:1548:20: warning: 't_fnbf' defined but not used [-Wunused-variable]
     static double  t_fnbf=0.0, t_wait=0.0;
                    ^~~~~~
../../../src/mdlib/force.c:1548:32: warning: 't_wait' defined but not used [-Wunused-variable]
     static double  t_fnbf=0.0, t_wait=0.0;
                                ^~~~~~
../../../src/mdlib/force.c:1549:20: warning: 'timesteps' defined but not used [-Wunused-variable]
     static int     timesteps=0;
                    ^~~~~~~~~
In file included from ../../../src/mdlib/force.c:69:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/pull.h:44,
                 from ../../../include/mdrun.h:56,
                 from ../../../src/mdlib/force.c:64:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../include/pull.h:44,
                 from ../../../include/mdrun.h:56,
                 from ../../../src/mdlib/force.c:64:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/pppm.h:46,
                 from ../../../src/mdlib/force.c:62:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nsgrid.lo ../../../src/mdlib/nsgrid.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/nsgrid.c  -fPIC -DPIC -o .libs/nsgrid.o
../../../src/mdlib/nsgrid.c: In function 'init_grid':
../../../src/mdlib/nsgrid.c:181:10: warning: unused variable 'm' [-Wunused-variable]
   int  d,m;
          ^
../../../src/mdlib/nsgrid.c:181:8: warning: unused variable 'd' [-Wunused-variable]
   int  d,m;
        ^
../../../src/mdlib/nsgrid.c: In function 'grid_first':
../../../src/mdlib/nsgrid.c:278:10: warning: unused variable 'cx' [-Wunused-variable]
   ivec   cx;
          ^~
../../../src/mdlib/nsgrid.c: In function 'fill_grid':
../../../src/mdlib/nsgrid.c:421:10: warning: variable 'nrx' set but not used [-Wunused-but-set-variable]
   int    nrx,nry,nrz;
          ^~~
In file included from ../../../src/mdlib/nsgrid.c:47:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/nsgrid.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o domdec_top.lo ../../../src/mdlib/domdec_top.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/domdec_top.c  -fPIC -DPIC -o .libs/domdec_top.o
../../../src/mdlib/domdec_top.c: In function 'print_missing_interactions_mb':
../../../src/mdlib/domdec_top.c:113:56: warning: unused variable 'a_gl' [-Wunused-variable]
     int ftype,ftype_j,nral,i,j_mol,j,k,a0,a0_mol,mol,a,a_gl;
                                                        ^~~~
../../../src/mdlib/domdec_top.c:113:38: warning: unused variable 'k' [-Wunused-variable]
     int ftype,ftype_j,nral,i,j_mol,j,k,a0,a0_mol,mol,a,a_gl;
                                      ^
../../../src/mdlib/domdec_top.c: In function 'global_atomnr_to_moltype_ind':
../../../src/mdlib/domdec_top.c:349:7: warning: unused variable 'molb' [-Wunused-variable]
   int molb;
       ^~~~
../../../src/mdlib/domdec_top.c: In function 'count_excls':
../../../src/mdlib/domdec_top.c:364:11: warning: unused variable 'n_inter' [-Wunused-variable]
     int n,n_inter,cg,at0,at1,at,excl,atj;
           ^~~~~~~
../../../src/mdlib/domdec_top.c: In function 'dd_make_reverse_top':
../../../src/mdlib/domdec_top.c:611:19: warning: unused variable 'n_recursive_vsite' [-Wunused-variable]
     int mb,natoms,n_recursive_vsite,nexcl,nexcl_icg,a;
                   ^~~~~~~~~~~~~~~~~
../../../src/mdlib/domdec_top.c: In function 'add_vsite':
../../../src/mdlib/domdec_top.c:760:37: warning: unused variable 'iatoms_r' [-Wunused-variable]
     t_iatom tiatoms[1+MAXATOMLIST],*iatoms_r;
                                     ^~~~~~~~
../../../src/mdlib/domdec_top.c: In function 'dd_make_local_top':
../../../src/mdlib/domdec_top.c:1408:10: warning: unused variable 'bUniqueExcl' [-Wunused-variable]
     bool bUniqueExcl,bRCheckMB,bRCheck2B,bRCheckExcl;
          ^~~~~~~~~~~
../../../src/mdlib/domdec_top.c: In function 'check_link':
../../../src/mdlib/domdec_top.c:1590:12: warning: unused variable 'aj' [-Wunused-variable]
     int  k,aj;
            ^~
In file included from ../../../src/mdlib/domdec_top.c:31:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/domdec_top.c:31:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o pme_pp.lo ../../../src/mdlib/pme_pp.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/pme_pp.c  -fPIC -DPIC -o .libs/pme_pp.o
../../../src/mdlib/pme_pp.c: In function 'gmx_pme_pp_init':
../../../src/mdlib/pme_pp.c:112:7: warning: unused variable 'rank' [-Wunused-variable]
   int rank;
       ^~~~
../../../src/mdlib/pme_pp.c: In function 'gmx_pme_recv_q_x':
../../../src/mdlib/pme_pp.c:261:9: warning: unused variable 'charge_pp' [-Wunused-variable]
   real *charge_pp;
         ^~~~~~~~~
../../../src/mdlib/pme_pp.c:260:25: warning: unused variable 'sender' [-Wunused-variable]
   int  nat=0,q,messages,sender;
                         ^~~~~~
../../../src/mdlib/pme_pp.c:260:16: warning: variable 'messages' set but not used [-Wunused-but-set-variable]
   int  nat=0,q,messages,sender;
                ^~~~~~~~
../../../src/mdlib/pme_pp.c:260:14: warning: unused variable 'q' [-Wunused-variable]
   int  nat=0,q,messages,sender;
              ^
../../../src/mdlib/pme_pp.c: In function 'gmx_pme_send_force_vir_ener':
../../../src/mdlib/pme_pp.c:446:7: warning: variable 'messages' set but not used [-Wunused-but-set-variable]
   int messages,ind_start,ind_end,receiver;
       ^~~~~~~~
At top level:
../../../src/mdlib/pme_pp.c:133:13: warning: 'gmx_pme_send_q_x_wait' defined but not used [-Wunused-function]
 static void gmx_pme_send_q_x_wait(gmx_domdec_t *dd)
             ^~~~~~~~~~~~~~~~~~~~~
In file included from ../../../include/pme.h:46,
                 from ../../../src/mdlib/pme_pp.c:49:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/mdlib/pme_pp.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/pme_pp.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o pppm.lo ../../../src/mdlib/pppm.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/pppm.c  -fPIC -DPIC -o .libs/pppm.o
../../../src/mdlib/pppm.c: In function 'convolution':
../../../src/mdlib/pppm.c:384:14: warning: unused variable 'jend' [-Wunused-variable]
   int jstart,jend;
              ^~~~
../../../src/mdlib/pppm.c:384:7: warning: unused variable 'jstart' [-Wunused-variable]
   int jstart,jend;
       ^~~~~~
At top level:
../../../src/mdlib/pppm.c:616:12: warning: 'gmx_pppm_opt_do' defined but not used [-Wunused-function]
 static int gmx_pppm_opt_do(FILE *log,       gmx_pme_t pme,
            ^~~~~~~~~~~~~~~
In file included from ../../../include/mdrun.h:50,
                 from ../../../src/mdlib/pppm.c:53:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../include/pppm.h:46,
                 from ../../../src/mdlib/pppm.c:51:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/mdlib/pppm.c:45:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/pppm.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o perf_est.lo ../../../src/mdlib/perf_est.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/perf_est.c  -fPIC -DPIC -o .libs/perf_est.o
../../../src/mdlib/perf_est.c: In function 'n_bonded_dx':
../../../src/mdlib/perf_est.c:62:2: warning: label 'F_CONNBONDS' defined but not used [-Wunused-label]
  F_CONNBONDS: ndxb = 0; break;
  ^~~~~~~~~~~
../../../src/mdlib/perf_est.c:61:2: warning: label 'F_POSRES' defined but not used [-Wunused-label]
  F_POSRES:    ndxb = 1; break;
  ^~~~~~~~
../../../src/mdlib/perf_est.c: In function 'pme_load_estimate':
../../../src/mdlib/perf_est.c:89:21: warning: unused variable 'fljtab' [-Wunused-variable]
   float fq,fqlj,flj,fljtab,fqljw,fqw,fqspread,ffft,fbond;
                     ^~~~~~
In file included from ../../../src/mdlib/perf_est.c:41:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/perf_est.c:41:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o rf_util.lo ../../../src/mdlib/rf_util.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/rf_util.c  -fPIC -DPIC -o .libs/rf_util.o
../../../src/mdlib/rf_util.c: In function 'RF_excl_correction':
../../../src/mdlib/rf_util.c:59:10: warning: unused variable 'top' [-Wunused-variable]
   int    top,i,j,j1,j2,k,ki;
          ^~~
In file included from ../../../src/mdlib/rf_util.c:46:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/rf_util.c:44:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/rf_util.c:44:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/mdlib/rf_util.c:42:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o pull.lo ../../../src/mdlib/pull.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/pull.c  -fPIC -DPIC -o .libs/pull.o
../../../src/mdlib/pull.c: In function 'apply_forces_grp':
../../../src/mdlib/pull.c:155:20: warning: variable 'end' set but not used [-Wunused-but-set-variable]
   int i,ii,m,start,end;
                    ^~~
../../../src/mdlib/pull.c: In function 'do_constraint':
../../../src/mdlib/pull.c:283:22: warning: unused variable 'mass' [-Wunused-variable]
   double lambda, rm, mass, invdt=0;
                      ^~~~
../../../src/mdlib/pull.c:282:10: warning: unused variable 'd0' [-Wunused-variable]
   double d0,inpr;
          ^~
../../../src/mdlib/pull.c: In function 'init_pull_group_index':
../../../src/mdlib/pull.c:779:16: warning: variable 'ga2la' set but not used [-Wunused-but-set-variable]
   gmx_ga2la_t *ga2la=NULL;
                ^~~~~
In file included from ../../../include/mdrun.h:50,
                 from ../../../src/mdlib/pull.c:60:
At top level:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/pull.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/pull.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/mdlib/pull.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
../../../src/mdlib/pull.c: In function 'open_pull_out.part.3':
../../../src/mdlib/pull.c:134:19: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=]
    sprintf(buf,"%d",g);
                   ^
In file included from /usr/include/stdio.h:862,
                 from ../../../src/mdlib/pull.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 2 and 11 bytes into a destination of size 10
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/mdlib/pull.c:128:23: warning: ' ' directive writing 1 byte into a region of size between 0 and 9 [-Wformat-overflow=]
        sprintf(buf,"%d %s%c",g,(bCoord && g > 0)?"d":"",'X'+m);
                       ^
In file included from /usr/include/stdio.h:862,
                 from ../../../src/mdlib/pull.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 4 and 14 bytes into a destination of size 10
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o partdec.lo ../../../src/mdlib/partdec.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/partdec.c  -fPIC -DPIC -o .libs/partdec.o
../../../src/mdlib/partdec.c: In function 'pr_idef_division':
../../../src/mdlib/partdec.c:343:15: warning: variable 'nr' set but not used [-Wunused-but-set-variable]
   int i,ftype,nr,nra,m0,m1;
               ^~
../../../src/mdlib/partdec.c: In function 'create_vsitelist':
../../../src/mdlib/partdec.c:477:7: warning: unused variable 'minidx' [-Wunused-variable]
   int minidx;
       ^~~~~~
../../../src/mdlib/partdec.c: In function 'setup_parallel_vsites':
../../../src/mdlib/partdec.c:511:15: warning: unused variable 'k' [-Wunused-variable]
   int i,inr,j,k,ftype;
               ^
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o shakef.lo ../../../src/mdlib/shakef.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/shakef.c  -fPIC -DPIC -o .libs/shakef.o
../../../src/mdlib/shakef.c: In function 'cshake':
../../../src/mdlib/shakef.c:79:19: warning: unused variable 'tjz' [-Wunused-variable]
   real    tjx,tjy,tjz;
                   ^~~
../../../src/mdlib/shakef.c:79:15: warning: unused variable 'tjy' [-Wunused-variable]
   real    tjx,tjy,tjz;
               ^~~
../../../src/mdlib/shakef.c:79:11: warning: unused variable 'tjx' [-Wunused-variable]
   real    tjx,tjy,tjz;
           ^~~
../../../src/mdlib/shakef.c:78:19: warning: unused variable 'tiz' [-Wunused-variable]
   real    tix,tiy,tiz;
                   ^~~
../../../src/mdlib/shakef.c:78:15: warning: unused variable 'tiy' [-Wunused-variable]
   real    tix,tiy,tiz;
               ^~~
../../../src/mdlib/shakef.c:78:11: warning: unused variable 'tix' [-Wunused-variable]
   real    tix,tiy,tiz;
           ^~~
At top level:
../../../src/mdlib/shakef.c:51:13: warning: 'pv' defined but not used [-Wunused-function]
 static void pv(FILE *log,char *s,rvec x)
             ^~
In file included from ../../../src/mdlib/shakef.c:46:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/shakef.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o pullutil.lo ../../../src/mdlib/pullutil.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/pullutil.c  -fPIC -DPIC -o .libs/pullutil.o
../../../src/mdlib/pullutil.c: In function 'pull_set_pbcatom':
../../../src/mdlib/pullutil.c:85:9: warning: unused variable 'm' [-Wunused-variable]
   int a,m;
         ^
../../../src/mdlib/pullutil.c: In function 'pull_calc_coms':
../../../src/mdlib/pullutil.c:278:9: warning: unused variable 'xx' [-Wunused-variable]
   rvec *xx[2],x_pbc={0,0,0},dx;
         ^~
In file included from ../../../src/mdlib/pullutil.c:46:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/pullutil.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/mdlib/pullutil.c:45:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o ns.lo ../../../src/mdlib/ns.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/ns.c  -fPIC -DPIC -o .libs/ns.o
../../../src/mdlib/ns.c: In function 'new_i_nblist':
../../../src/mdlib/ns.c:394:20: warning: unused variable 'nshift' [-Wunused-variable]
     int    i,k,nri,nshift;
                    ^~~~~~
../../../src/mdlib/ns.c:394:14: warning: unused variable 'k' [-Wunused-variable]
     int    i,k,nri,nshift;
              ^
../../../src/mdlib/ns.c:394:12: warning: unused variable 'i' [-Wunused-variable]
     int    i,k,nri,nshift;
            ^
../../../src/mdlib/ns.c: In function 'put_in_list':
../../../src/mdlib/ns.c:546:25: warning: unused variable 'rlj' [-Wunused-variable]
     real      qi,qiB,qq,rlj;
                         ^~~
../../../src/mdlib/ns.c:546:22: warning: unused variable 'qq' [-Wunused-variable]
     real      qi,qiB,qq,rlj;
                      ^~
../../../src/mdlib/ns.c:541:23: warning: unused variable 'len' [-Wunused-variable]
     int       i0,nicg,len;
                       ^~~
../../../src/mdlib/ns.c:539:39: warning: unused variable 'ind_ij' [-Wunused-variable]
     int      i,j,jcg,igid,gid,nbl_ind,ind_ij;
                                       ^~~~~~
../../../src/mdlib/ns.c: In function 'ns_inner_tric':
../../../src/mdlib/ns.c:1283:15: warning: unused variable 'nsbuf' [-Wunused-variable]
     t_ns_buf *nsbuf;
               ^~~~~
../../../src/mdlib/ns.c: In function 'ns_inner_rect':
../../../src/mdlib/ns.c:1314:15: warning: unused variable 'nsbuf' [-Wunused-variable]
     t_ns_buf *nsbuf;
               ^~~~~
../../../src/mdlib/ns.c: In function 'ns_simple_core':
../../../src/mdlib/ns.c:1365:38: warning: unused variable 'nri' [-Wunused-variable]
     int      nsearch,icg,jcg,igid,i0,nri,nn;
                                      ^~~
../../../src/mdlib/ns.c:1365:35: warning: unused variable 'i0' [-Wunused-variable]
     int      nsearch,icg,jcg,igid,i0,nri,nn;
                                   ^~
../../../src/mdlib/ns.c:1365:26: warning: unused variable 'jcg' [-Wunused-variable]
     int      nsearch,icg,jcg,igid,i0,nri,nn;
                          ^~~
../../../src/mdlib/ns.c: In function 'nsgrid_core':
../../../src/mdlib/ns.c:1674:58: warning: unused variable 'dcz' [-Wunused-variable]
     real    r2,rs2,rvdw2,rcoul2,rm2,rl2,XI,YI,ZI,dcx,dcy,dcz,tmp1,tmp2;
                                                          ^~~
../../../src/mdlib/ns.c:1674:54: warning: unused variable 'dcy' [-Wunused-variable]
     real    r2,rs2,rvdw2,rcoul2,rm2,rl2,XI,YI,ZI,dcx,dcy,dcz,tmp1,tmp2;
                                                      ^~~
../../../src/mdlib/ns.c:1674:50: warning: unused variable 'dcx' [-Wunused-variable]
     real    r2,rs2,rvdw2,rcoul2,rm2,rl2,XI,YI,ZI,dcx,dcy,dcz,tmp1,tmp2;
                                                  ^~~
../../../src/mdlib/ns.c:1673:13: warning: unused variable 'xi' [-Wunused-variable]
     rvec    xi,*cgcm,grid_offset;
             ^~
../../../src/mdlib/ns.c:1669:42: warning: unused variable 'nri' [-Wunused-variable]
     int     cg0,cg1,icg=-1,cgsnr,i0,igid,nri,naaj,max_jcg;
                                          ^~~
../../../src/mdlib/ns.c:1666:45: warning: variable 'grid_z' set but not used [-Wunused-but-set-variable]
     real    gridx,gridy,gridz,grid_x,grid_y,grid_z;
                                             ^~~~~~
../../../src/mdlib/ns.c: In function 'init_ns':
../../../src/mdlib/ns.c:2177:11: warning: unused variable 'ptr' [-Wunused-variable]
     char *ptr;
           ^~~
../../../src/mdlib/ns.c: In function 'search_neighbours':
../../../src/mdlib/ns.c:2280:23: warning: unused variable 'cg_end' [-Wunused-variable]
     int      cg_start,cg_end,start,end;
                       ^~~~~~
../../../src/mdlib/ns.c:2280:14: warning: unused variable 'cg_start' [-Wunused-variable]
     int      cg_start,cg_end,start,end;
              ^~~~~~~~
../../../src/mdlib/ns.c:2279:15: warning: unused variable 'i_egp_flags' [-Wunused-variable]
     bool     *i_egp_flags;
               ^~~~~~~~~~~
../../../src/mdlib/ns.c:2278:15: warning: unused variable 'ptr' [-Wunused-variable]
     char     *ptr;
               ^~~
../../../src/mdlib/ns.c:2274:16: warning: unused variable 'j' [-Wunused-variable]
     int      i,j,m,ngid;
                ^
../../../src/mdlib/ns.c:2274:14: warning: unused variable 'i' [-Wunused-variable]
     int      i,j,m,ngid;
              ^
In file included from ../../../src/mdlib/ns.c:54:
At top level:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/ns.c:51:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/mdlib/ns.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o sim_util.lo ../../../src/mdlib/sim_util.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/sim_util.c  -fPIC -DPIC -o .libs/sim_util.o
../../../src/mdlib/sim_util.c: In function 'calc_virial':
../../../src/mdlib/sim_util.c:250:10: warning: unused variable 'virtest' [-Wunused-variable]
   tensor virtest;
          ^~~~~~~
../../../src/mdlib/sim_util.c:249:9: warning: unused variable 'j' [-Wunused-variable]
   int i,j;
         ^
../../../src/mdlib/sim_util.c: In function 'do_force':
../../../src/mdlib/sim_util.c:357:24: warning: unused variable 'cycles_pme' [-Wunused-variable]
   float  cycles_ppdpme,cycles_pme,cycles_force;
                        ^~~~~~~~~~
../../../src/mdlib/sim_util.c:355:10: warning: unused variable 'e' [-Wunused-variable]
   real   e,v,dvdl;
          ^
../../../src/mdlib/sim_util.c:354:10: warning: unused variable 'boxs' [-Wunused-variable]
   matrix boxs;
          ^~~~
../../../src/mdlib/sim_util.c:353:57: warning: unused variable 'bBS' [-Wunused-variable]
   bool   bSepDVDL,bStateChanged,bNS,bFillGrid,bCalcCGCM,bBS,bDoForces;
                                                         ^~~
../../../src/mdlib/sim_util.c:348:15: warning: unused variable 'box_size' [-Wunused-variable]
   static rvec box_size;
               ^~~~~~~~
../../../src/mdlib/sim_util.c: In function 'calc_enervirdiff':
../../../src/mdlib/sim_util.c:823:13: warning: variable 'r1' set but not used [-Wunused-but-set-variable]
   double r0,r1,r,rc3,rc9,ea,eb,ec,pa,pb,pc,pd;
             ^~
../../../src/mdlib/sim_util.c: In function 'init_md':
../../../src/mdlib/sim_util.c:1222:13: warning: unused variable 'mod' [-Wunused-variable]
   real tmpt,mod;
             ^~~
../../../src/mdlib/sim_util.c:1222:8: warning: unused variable 'tmpt' [-Wunused-variable]
   real tmpt,mod;
        ^~~~
../../../src/mdlib/sim_util.c:1221:12: warning: unused variable 'n' [-Wunused-variable]
   int  i,j,n;
            ^
../../../src/mdlib/sim_util.c:1221:10: warning: unused variable 'j' [-Wunused-variable]
   int  i,j,n;
          ^
At top level:
../../../src/mdlib/sim_util.c:348:15: warning: 'box_size' defined but not used [-Wunused-variable]
   static rvec box_size;
               ^~~~~~~~
In file included from ../../../src/mdlib/sim_util.c:78:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/pme.h:46,
                 from ../../../src/mdlib/sim_util.c:68:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/mdlib/sim_util.c:57:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/sim_util.c:57:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o stat.lo ../../../src/mdlib/stat.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/stat.c  -fPIC -DPIC -o .libs/stat.o
In file included from ../../../include/statutil.h:51,
                 from ../../../src/mdlib/stat.c:63:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/mdlib/stat.c:53:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/stat.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/stat.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o tables.lo ../../../src/mdlib/tables.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/tables.c  -fPIC -DPIC -o .libs/tables.o
../../../src/mdlib/tables.c: In function 'done_tabledata':
../../../src/mdlib/tables.c:470:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/mdlib/tables.c: In function 'make_tables':
../../../src/mdlib/tables.c:835:17: warning: unused variable 'j' [-Wunused-variable]
   int         i,j,k,nx,nx0,tabsel[etiNR];
                 ^
../../../src/mdlib/tables.c: In function 'make_bonded_table':
../../../src/mdlib/tables.c:950:10: warning: variable 'start' set but not used [-Wunused-but-set-variable]
   double start;
          ^~~~~
At top level:
../../../src/mdlib/tables.c:155:13: warning: 'splint' defined but not used [-Wunused-function]
 static void splint(real xa[],real ya[],real y2a[],
             ^~~~~~
In file included from ../../../src/mdlib/tables.c:51:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/tables.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/tables.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o tgroup.lo ../../../src/mdlib/tgroup.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/tgroup.c  -fPIC -DPIC -o .libs/tgroup.o
../../../src/mdlib/tgroup.c: In function 'init_grptcstat':
../../../src/mdlib/tgroup.c:57:9: warning: unused variable 'j' [-Wunused-variable]
   int i,j;
         ^
At top level:
../../../src/mdlib/tgroup.c:141:13: warning: 'accumulate_ekin' defined but not used [-Wunused-function]
 static void accumulate_ekin(t_commrec *cr,t_grpopts *opts,
             ^~~~~~~~~~~~~~~
In file included from ../../../include/update.h:48,
                 from ../../../src/mdlib/tgroup.c:51:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/tgroup.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/tgroup.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o vcm.lo ../../../src/mdlib/vcm.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/vcm.c  -fPIC -DPIC -o .libs/vcm.o
../../../src/mdlib/vcm.c: In function 'calc_vcm_grp':
../../../src/mdlib/vcm.c:122:28: warning: unused variable 'zz' [-Wunused-variable]
   real   m0,xx,xy,xz,yy,yz,zz;
                            ^~
../../../src/mdlib/vcm.c:122:25: warning: unused variable 'yz' [-Wunused-variable]
   real   m0,xx,xy,xz,yy,yz,zz;
                         ^~
../../../src/mdlib/vcm.c:122:22: warning: unused variable 'yy' [-Wunused-variable]
   real   m0,xx,xy,xz,yy,yz,zz;
                      ^~
../../../src/mdlib/vcm.c:122:19: warning: unused variable 'xz' [-Wunused-variable]
   real   m0,xx,xy,xz,yy,yz,zz;
                   ^~
../../../src/mdlib/vcm.c:122:16: warning: unused variable 'xy' [-Wunused-variable]
   real   m0,xx,xy,xz,yy,yz,zz;
                ^~
../../../src/mdlib/vcm.c:122:13: warning: unused variable 'xx' [-Wunused-variable]
   real   m0,xx,xy,xz,yy,yz,zz;
             ^~
../../../src/mdlib/vcm.c: In function 'do_stopcm_grp':
../../../src/mdlib/vcm.c:171:11: warning: unused variable 'tm_1' [-Wunused-variable]
   real tm,tm_1;
           ^~~~
../../../src/mdlib/vcm.c:171:8: warning: unused variable 'tm' [-Wunused-variable]
   real tm,tm_1;
        ^~
../../../src/mdlib/vcm.c:170:12: warning: unused variable 'm' [-Wunused-variable]
   int  i,g,m;
            ^
../../../src/mdlib/vcm.c: In function 'check_cm_grp':
../../../src/mdlib/vcm.c:250:14: warning: unused variable 'Tcm' [-Wunused-variable]
   tensor Icm,Tcm;
              ^~~
In file included from ../../../src/mdlib/vcm.c:43:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/vcm.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o pme.lo ../../../src/mdlib/pme.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/pme.c  -fPIC -DPIC -o .libs/pme.o
../../../src/mdlib/pme.c: In function 'pmeredist':
../../../src/mdlib/pme.c:380:12: warning: unused variable 'ii' [-Wunused-variable]
     int i, ii;
            ^~
../../../src/mdlib/pme.c:380:9: warning: unused variable 'i' [-Wunused-variable]
     int i, ii;
         ^
../../../src/mdlib/pme.c:379:10: warning: variable 'idxa' set but not used [-Wunused-but-set-variable]
     int *idxa;
          ^~~~
../../../src/mdlib/pme.c: In function 'gmx_sum_qgrid_dd':
../../../src/mdlib/pme.c:660:18: warning: unused variable 'to' [-Wunused-variable]
     real *from, *to;
                  ^~
../../../src/mdlib/pme.c:660:11: warning: unused variable 'from' [-Wunused-variable]
     real *from, *to;
           ^~~~
../../../src/mdlib/pme.c:659:22: warning: unused variable 'pgc' [-Wunused-variable]
     pme_grid_comm_t *pgc;
                      ^~~
../../../src/mdlib/pme.c:658:15: warning: unused variable 'localsize' [-Wunused-variable]
     int la12r,localsize;
               ^~~~~~~~~
../../../src/mdlib/pme.c:658:9: warning: unused variable 'la12r' [-Wunused-variable]
     int la12r,localsize;
         ^~~~~
../../../src/mdlib/pme.c:657:11: warning: unused variable 'i' [-Wunused-variable]
     int b,i;
           ^
../../../src/mdlib/pme.c:657:9: warning: unused variable 'b' [-Wunused-variable]
     int b,i;
         ^
../../../src/mdlib/pme.c:656:18: warning: unused variable 'tmp' [-Wunused-variable]
     static real *tmp=NULL;
                  ^~~
../../../src/mdlib/pme.c: In function 'gmx_sum_qgrid':
../../../src/mdlib/pme.c:756:16: warning: unused variable 'maxproc' [-Wunused-variable]
     static int maxproc;
                ^~~~~~~
../../../src/mdlib/pme.c:755:16: warning: unused variable 'localsize' [-Wunused-variable]
     static int localsize;
                ^~~~~~~~~
../../../src/mdlib/pme.c:754:9: warning: unused variable 'i' [-Wunused-variable]
     int i;
         ^
../../../src/mdlib/pme.c:753:18: warning: unused variable 'tmp' [-Wunused-variable]
     static real *tmp;
                  ^~~
../../../src/mdlib/pme.c:752:17: warning: unused variable 'bFirst' [-Wunused-variable]
     static bool bFirst=TRUE;
                 ^~~~~~
../../../src/mdlib/pme.c: In function 'spread_q_bsplines':
../../../src/mdlib/pme.c:840:20: warning: unused variable 'bndsize' [-Wunused-variable]
     int localsize, bndsize;
                    ^~~~~~~
../../../src/mdlib/pme.c:840:9: warning: unused variable 'localsize' [-Wunused-variable]
     int localsize, bndsize;
         ^~~~~~~~~
../../../src/mdlib/pme.c:835:16: warning: unused variable 'i' [-Wunused-variable]
     int      b,i,nn,n,*i0,*j0,*k0,*ii0,*jj0,*kk0,ithx,ithy,ithz;
                ^
../../../src/mdlib/pme.c:835:14: warning: unused variable 'b' [-Wunused-variable]
     int      b,i,nn,n,*i0,*j0,*k0,*ii0,*jj0,*kk0,ithx,ithy,ithz;
              ^
../../../src/mdlib/pme.c:834:20: warning: unused variable 'ol' [-Wunused-variable]
     pme_overlap_t *ol;
                    ^~
../../../src/mdlib/pme.c: In function 'init_atomcomm':
../../../src/mdlib/pme.c:1441:22: warning: unused variable 'pgc' [-Wunused-variable]
     pme_grid_comm_t *pgc;
                      ^~~
../../../src/mdlib/pme.c:1440:12: warning: unused variable 'nk' [-Wunused-variable]
     int nn,nk;
            ^~
../../../src/mdlib/pme.c:1440:9: warning: unused variable 'nn' [-Wunused-variable]
     int nn,nk;
         ^~
../../../src/mdlib/pme.c:1439:27: warning: unused variable 'i' [-Wunused-variable]
     int lbnd,rbnd,maxlr,b,i;
                           ^
../../../src/mdlib/pme.c:1439:25: warning: unused variable 'b' [-Wunused-variable]
     int lbnd,rbnd,maxlr,b,i;
                         ^
../../../src/mdlib/pme.c:1439:19: warning: unused variable 'maxlr' [-Wunused-variable]
     int lbnd,rbnd,maxlr,b,i;
                   ^~~~~
../../../src/mdlib/pme.c:1439:14: warning: unused variable 'rbnd' [-Wunused-variable]
     int lbnd,rbnd,maxlr,b,i;
              ^~~~
../../../src/mdlib/pme.c:1439:9: warning: unused variable 'lbnd' [-Wunused-variable]
     int lbnd,rbnd,maxlr,b,i;
         ^~~~
../../../src/mdlib/pme.c: In function 'gmx_pme_init':
../../../src/mdlib/pme.c:1541:25: warning: unused variable 'maxlr' [-Wunused-variable]
     int b,d,i,lbnd,rbnd,maxlr;
                         ^~~~~
../../../src/mdlib/pme.c:1541:20: warning: unused variable 'rbnd' [-Wunused-variable]
     int b,d,i,lbnd,rbnd,maxlr;
                    ^~~~
../../../src/mdlib/pme.c:1541:15: warning: unused variable 'lbnd' [-Wunused-variable]
     int b,d,i,lbnd,rbnd,maxlr;
               ^~~~
../../../src/mdlib/pme.c:1541:11: warning: unused variable 'd' [-Wunused-variable]
     int b,d,i,lbnd,rbnd,maxlr;
           ^
../../../src/mdlib/pme.c:1541:9: warning: unused variable 'b' [-Wunused-variable]
     int b,d,i,lbnd,rbnd,maxlr;
         ^
At top level:
../../../src/mdlib/pme.c:656:18: warning: 'tmp' defined but not used [-Wunused-variable]
     static real *tmp=NULL;
                  ^~~
../../../src/mdlib/pme.c:752:17: warning: 'bFirst' defined but not used [-Wunused-variable]
     static bool bFirst=TRUE;
                 ^~~~~~
../../../src/mdlib/pme.c:753:18: warning: 'tmp' defined but not used [-Wunused-variable]
     static real *tmp;
                  ^~~
../../../src/mdlib/pme.c:755:16: warning: 'localsize' defined but not used [-Wunused-variable]
     static int localsize;
                ^~~~~~~~~
../../../src/mdlib/pme.c:756:16: warning: 'maxproc' defined but not used [-Wunused-variable]
     static int maxproc;
                ^~~~~~~
../../../src/mdlib/pme.c:198:13: warning: 'pr_grid_dist' defined but not used [-Wunused-function]
 static void pr_grid_dist(FILE *fp,char *title,t_fftgrid *grid)
             ^~~~~~~~~~~~
In file included from ../../../src/mdlib/pme.c:81:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/pme.c:71:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/mdlib/pme.c:70:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/pme.c:70:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o shellfc.lo ../../../src/mdlib/shellfc.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/shellfc.c  -fPIC -DPIC -o .libs/shellfc.o
../../../src/mdlib/shellfc.c: In function 'predict_shells':
../../../src/mdlib/shellfc.c:115:18: warning: unused variable 'dt_3' [-Wunused-variable]
   real dt_1,dt_2,dt_3,fudge,tm,m1,m2,m3;
                  ^~~~
../../../src/mdlib/shellfc.c:115:13: warning: unused variable 'dt_2' [-Wunused-variable]
   real dt_1,dt_2,dt_3,fudge,tm,m1,m2,m3;
             ^~~~
../../../src/mdlib/shellfc.c: In function 'init_shell_flexcon':
../../../src/mdlib/shellfc.c:197:32: warning: unused variable 'mt' [-Wunused-variable]
   int         i,j,nmol,type,mb,mt,a_offset,cg,mol,ftype,nra;
                                ^~
../../../src/mdlib/shellfc.c:197:19: warning: unused variable 'nmol' [-Wunused-variable]
   int         i,j,nmol,type,mb,mt,a_offset,cg,mol,ftype,nra;
                   ^~~~
../../../src/mdlib/shellfc.c: In function 'init_adir':
../../../src/mdlib/shellfc.c:694:12: warning: unused variable 'dx' [-Wunused-variable]
   rvec   p,dx;
            ^~
../../../src/mdlib/shellfc.c:694:10: warning: unused variable 'p' [-Wunused-variable]
   rvec   p,dx;
          ^
../../../src/mdlib/shellfc.c:691:13: warning: unused variable 'scale' [-Wunused-variable]
   real   dt,scale;
             ^~~~~
../../../src/mdlib/shellfc.c:690:16: warning: unused variable 'gt' [-Wunused-variable]
   int    gf,ga,gt;
                ^~
../../../src/mdlib/shellfc.c:690:13: warning: unused variable 'ga' [-Wunused-variable]
   int    gf,ga,gt;
             ^~
../../../src/mdlib/shellfc.c:690:10: warning: unused variable 'gf' [-Wunused-variable]
   int    gf,ga,gt;
          ^~
../../../src/mdlib/shellfc.c: In function 'relax_shell_flexcon':
../../../src/mdlib/shellfc.c:776:19: warning: unused variable 'g' [-Wunused-variable]
   int    nflexcon,g,number_steps,d,Min=0,count=0;
                   ^
../../../src/mdlib/shellfc.c:772:10: warning: unused variable 'cbuf' [-Wunused-variable]
   char   cbuf[56];
          ^~~~
../../../src/mdlib/shellfc.c:771:19: warning: unused variable 'xiS' [-Wunused-variable]
   real   ftol,xiH,xiS,dum=0;
                   ^~~
../../../src/mdlib/shellfc.c:771:15: warning: unused variable 'xiH' [-Wunused-variable]
   real   ftol,xiH,xiS,dum=0;
               ^~~
../../../src/mdlib/shellfc.c:769:10: warning: unused variable 'dx' [-Wunused-variable]
   rvec   dx;
          ^~
In file included from ../../../src/mdlib/shellfc.c:55:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/mdrun.h:50,
                 from ../../../src/mdlib/shellfc.c:45:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/shellfc.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/shellfc.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o wnblist.lo ../../../src/mdlib/wnblist.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/wnblist.c  -fPIC -DPIC -o .libs/wnblist.o
../../../src/mdlib/wnblist.c: In function 'read_nblist':
../../../src/mdlib/wnblist.c:135:27: warning: unused variable 'icmp' [-Wunused-variable]
     int  i,ii,j,nnbl,full,icmp,nri,isolv;
                           ^~~~
../../../src/mdlib/wnblist.c:135:22: warning: unused variable 'full' [-Wunused-variable]
     int  i,ii,j,nnbl,full,icmp,nri,isolv;
                      ^~~~
../../../src/mdlib/wnblist.c:135:17: warning: unused variable 'nnbl' [-Wunused-variable]
     int  i,ii,j,nnbl,full,icmp,nri,isolv;
                 ^~~~
../../../src/mdlib/wnblist.c:134:26: warning: unused variable 'b2' [-Wunused-variable]
     char buf[256],b1[32],b2[32],solv[256],il_code[256];
                          ^~
../../../src/mdlib/wnblist.c:134:19: warning: unused variable 'b1' [-Wunused-variable]
     char buf[256],b1[32],b2[32],solv[256],il_code[256];
                   ^~
../../../src/mdlib/wnblist.c:133:10: warning: unused variable 'bNL' [-Wunused-variable]
     bool bNL;
          ^~~
In file included from ../../../src/mdlib/wnblist.c:44:
At top level:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o wall.lo ../../../src/mdlib/wall.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/wall.c  -fPIC -DPIC -o .libs/wall.o
../../../src/mdlib/wall.c: In function 'do_walls':
../../../src/mdlib/wall.c:107:47: warning: unused variable 'Heps' [-Wunused-variable]
   real tabscale,*VFtab,rt,eps,eps2,Yt,Ft,Geps,Heps,Heps2,Fp,VV,FF;
                                               ^~~~
../../../src/mdlib/wall.c:103:50: warning: variable 'Fwall' set but not used [-Wunused-but-set-variable]
   real *nbfp,lamfac,fac_d[2],fac_r[2],Cd,Cr,Vtot,Fwall[2];
                                                  ^~~~~
In file included from ../../../src/mdlib/wall.c:48:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/wall.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/mdlib/wall.c:45:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o update.lo ../../../src/mdlib/update.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/update.c  -fPIC -DPIC -o .libs/update.o
../../../src/mdlib/update.c: In function 'update':
../../../src/mdlib/update.c:771:39: warning: unused variable 'g' [-Wunused-variable]
   int              start,homenr,i,n,m,g;
                                       ^
../../../src/mdlib/update.c:770:20: warning: variable 'dt_1' set but not used [-Wunused-but-set-variable]
   real             dt_1;
                    ^~~~
In file included from ../../../src/mdlib/update.c:62:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/update.h:48,
                 from ../../../src/mdlib/update.c:53:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/update.c:50:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/update.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o minimize.lo ../../../src/mdlib/minimize.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/minimize.c  -fPIC -DPIC -o .libs/minimize.o
../../../src/mdlib/minimize.c: In function 'get_f_norm_max':
../../../src/mdlib/minimize.c:153:14: warning: unused variable 'fmax2_0' [-Wunused-variable]
   real fmax2,fmax2_0,fam;
              ^~~~~~~
../../../src/mdlib/minimize.c: In function 'evaluate_energy':
../../../src/mdlib/minimize.c:573:12: warning: unused variable 'state' [-Wunused-variable]
   t_state *state;
            ^~~~~
../../../src/mdlib/minimize.c: In function 'do_cg':
../../../src/mdlib/minimize.c:813:10: warning: unused variable 'terminate' [-Wunused-variable]
   real   terminate=0;
          ^~~~~~~~~
../../../src/mdlib/minimize.c:798:26: warning: unused variable 'sum' [-Wunused-variable]
   double gpa,gpb,gpc,tmp,sum[2],minstep;
                          ^~~
../../../src/mdlib/minimize.c:797:28: warning: unused variable 'sfm' [-Wunused-variable]
   rvec   *f_global,*p,*sf,*sfm;
                            ^~~
../../../src/mdlib/minimize.c: In function 'do_lbfgs':
../../../src/mdlib/minimize.c:1329:10: warning: unused variable 'terminate' [-Wunused-variable]
   real   terminate;
          ^~~~~~~~~
../../../src/mdlib/minimize.c:1320:20: warning: variable 'first' set but not used [-Wunused-but-set-variable]
   bool   converged,first;
                    ^~~~~
../../../src/mdlib/minimize.c: In function 'do_steep':
../../../src/mdlib/minimize.c:1957:10: warning: unused variable 'terminate' [-Wunused-variable]
   real   terminate=0;
          ^~~~~~~~~
../../../src/mdlib/minimize.c:1946:16: warning: unused variable 'dvdlambda' [-Wunused-variable]
   real   ustep,dvdlambda,fnormn;
                ^~~~~~~~~
../../../src/mdlib/minimize.c:1945:19: warning: unused variable 'constepsize' [-Wunused-variable]
   real   stepsize,constepsize;
                   ^~~~~~~~~~~
../../../src/mdlib/minimize.c: In function 'do_nm':
../../../src/mdlib/minimize.c:2163:22: warning: unused variable 'fmax' [-Wunused-variable]
     real       fnorm,fmax;
                      ^~~~
../../../src/mdlib/minimize.c:2163:16: warning: unused variable 'fnorm' [-Wunused-variable]
     real       fnorm,fmax;
                ^~~~~
../../../src/mdlib/minimize.c:2151:16: warning: unused variable 'nfmax' [-Wunused-variable]
     int        nfmax,count;
                ^~~~~
../../../src/mdlib/minimize.c:2149:16: warning: unused variable 'bNS' [-Wunused-variable]
     bool       bNS;
                ^~~
../../../src/mdlib/minimize.c:2148:18: warning: variable 'lambda' set but not used [-Wunused-but-set-variable]
     real       t,lambda,t0,lam0;
                  ^~~~~~
../../../src/mdlib/minimize.c: In function 'do_tpi':
../../../src/mdlib/minimize.c:2419:18: warning: unused variable 'end' [-Wunused-variable]
   int    i,start,end;
                  ^~~
../../../src/mdlib/minimize.c:2419:12: warning: unused variable 'start' [-Wunused-variable]
   int    i,start,end;
            ^~~~~
../../../src/mdlib/minimize.c:2404:15: warning: unused variable 'TPI' [-Wunused-variable]
   const char *TPI="Test Particle Insertion";
               ^~~
At top level:
../../../src/mdlib/minimize.c:515:13: warning: 'do_x_sub' defined but not used [-Wunused-function]
 static void do_x_sub(t_commrec *cr,int n,rvec *x1,rvec *x2,real a,rvec *f)
             ^~~~~~~~
../../../src/mdlib/minimize.c:493:13: warning: 'do_x_step' defined but not used [-Wunused-function]
 static void do_x_step(t_commrec *cr,int n,rvec *x1,real a,rvec *f,rvec *x2)
             ^~~~~~~~~
In file included from ../../../include/pme.h:46,
                 from ../../../src/mdlib/minimize.c:83:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/mdlib/minimize.c:63:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../include/pull.h:44,
                 from ../../../include/update.h:49,
                 from ../../../src/mdlib/minimize.c:59:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../include/pull.h:44,
                 from ../../../include/update.h:49,
                 from ../../../src/mdlib/minimize.c:59:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/mdlib/minimize.c:47:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o csettle.lo ../../../src/mdlib/csettle.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/csettle.c  -fPIC -DPIC -o .libs/csettle.o
../../../src/mdlib/csettle.c: In function 'xshake':
../../../src/mdlib/csettle.c:183:39: warning: unused variable 'conv' [-Wunused-variable]
   int i,ll,ii,jj,l3,ix,iy,iz,jx,jy,jz,conv;
                                       ^~~~
../../../src/mdlib/csettle.c: In function 'csettle':
../../../src/mdlib/csettle.c:298:10: warning: unused variable 'shakeret' [-Wunused-variable]
   int i, shakeret, ow1, hw2, hw3;
          ^~~~~~~~
In file included from ../../../src/mdlib/csettle.c:42:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/csettle.c:42:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_fft.lo ../../../src/mdlib/gmx_fft.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/gmx_fft.c  -fPIC -DPIC -o .libs/gmx_fft.o
In file included from ../../../src/mdlib/gmx_fft.c:30:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_parallel_3dfft.lo ../../../src/mdlib/gmx_parallel_3dfft.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/gmx_parallel_3dfft.c  -fPIC -DPIC -o .libs/gmx_parallel_3dfft.o
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_wallcycle.lo ../../../src/mdlib/gmx_wallcycle.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/gmx_wallcycle.c  -fPIC -DPIC -o .libs/gmx_wallcycle.o
../../../src/mdlib/gmx_wallcycle.c: In function 'wallcycle_sum':
../../../src/mdlib/gmx_wallcycle.c:163:31: warning: unused variable 'buf_all' [-Wunused-variable]
   double buf[ewcNR],*cyc_all,*buf_all;
                               ^~~~~~~
../../../src/mdlib/gmx_wallcycle.c:163:22: warning: unused variable 'cyc_all' [-Wunused-variable]
   double buf[ewcNR],*cyc_all,*buf_all;
                      ^~~~~~~
../../../src/mdlib/gmx_wallcycle.c:163:10: warning: unused variable 'buf' [-Wunused-variable]
   double buf[ewcNR],*cyc_all,*buf_all;
          ^~~
At top level:
../../../src/mdlib/gmx_wallcycle.c:59:26: warning: 'wc_barrier' defined but not used [-Wunused-variable]
 static bool              wc_barrier=FALSE;
                          ^~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o qm_gaussian.lo ../../../src/mdlib/qm_gaussian.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/qm_gaussian.c  -fPIC -DPIC -o .libs/qm_gaussian.o
../../../src/mdlib/qm_gaussian.c: In function 'init_gaussian':
../../../src/mdlib/qm_gaussian.c:73:6: warning: unused variable 'rffile' [-Wunused-variable]
     *rffile=NULL,*out=NULL;
      ^~~~~~
In file included from ../../../src/mdlib/qm_gaussian.c:60:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/qm_gaussian.c:49:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/qm_gaussian.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/qm_gaussian.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o clincs.lo ../../../src/mdlib/clincs.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/clincs.c  -fPIC -DPIC -o .libs/clincs.o
../../../src/mdlib/clincs.c: In function 'do_lincsp':
../../../src/mdlib/clincs.c:189:54: warning: unused variable 'lam' [-Wunused-variable]
     real    tmp0,tmp1,tmp2,im1,im2,mvb,rlen,len,wfac,lam;
                                                      ^~~
../../../src/mdlib/clincs.c:189:49: warning: unused variable 'wfac' [-Wunused-variable]
     real    tmp0,tmp1,tmp2,im1,im2,mvb,rlen,len,wfac,lam;
                                                 ^~~~
../../../src/mdlib/clincs.c:189:45: warning: unused variable 'len' [-Wunused-variable]
     real    tmp0,tmp1,tmp2,im1,im2,mvb,rlen,len,wfac,lam;
                                             ^~~
../../../src/mdlib/clincs.c:189:40: warning: unused variable 'rlen' [-Wunused-variable]
     real    tmp0,tmp1,tmp2,im1,im2,mvb,rlen,len,wfac,lam;
                                        ^~~~
../../../src/mdlib/clincs.c: In function 'set_lincs':
../../../src/mdlib/clincs.c:764:14: warning: variable 'bLocal' set but not used [-Wunused-but-set-variable]
     bool     bLocal;
              ^~~~~~
../../../src/mdlib/clincs.c: In function 'constrain_lincs':
../../../src/mdlib/clincs.c:1084:25: warning: unused variable 'error' [-Wunused-variable]
     int   i,warn,p_imax,error;
                         ^~~~~
At top level:
../../../src/mdlib/clincs.c:1034:13: warning: 'dump_conf' defined but not used [-Wunused-function]
 static void dump_conf(gmx_domdec_t *dd,struct gmx_lincsdata *li,
             ^~~~~~~~~
In file included from ../../../include/mdrun.h:50,
                 from ../../../src/mdlib/clincs.c:50:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/clincs.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/clincs.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/mdlib/clincs.c:45:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o vsite.lo ../../../src/mdlib/vsite.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/vsite.c  -fPIC -DPIC -o .libs/vsite.o
../../../src/mdlib/vsite.c: In function 'constr_vsiten':
../../../src/mdlib/vsite.c:437:8: warning: unused variable 'xs' [-Wunused-variable]
   rvec xs,x1,dx;
        ^~
../../../src/mdlib/vsite.c: In function 'construct_vsites':
../../../src/mdlib/vsite.c:484:25: warning: unused variable 'rtmp' [-Wunused-variable]
   rvec      reftmp,vtmp,rtmp;
                         ^~~~
../../../src/mdlib/vsite.c:484:20: warning: unused variable 'vtmp' [-Wunused-variable]
   rvec      reftmp,vtmp,rtmp;
                    ^~~~
../../../src/mdlib/vsite.c:484:13: warning: unused variable 'reftmp' [-Wunused-variable]
   rvec      reftmp,vtmp,rtmp;
             ^~~~~~
../../../src/mdlib/vsite.c:478:19: warning: unused variable 'ii' [-Wunused-variable]
   int       i,inc,ii,nra,nr,tp,ftype;
                   ^~
../../../src/mdlib/vsite.c: In function 'spread_vsite2':
../../../src/mdlib/vsite.c:655:11: warning: unused variable 'b' [-Wunused-variable]
   real    b;
           ^
../../../src/mdlib/vsite.c: In function 'spread_vsite3FD':
../../../src/mdlib/vsite.c:770:23: warning: unused variable 'd' [-Wunused-variable]
   int     svi,sji,skj,d;
                       ^
../../../src/mdlib/vsite.c:767:14: warning: unused variable 'fz' [-Wunused-variable]
   real fx,fy,fz,c,invl,fproj,a1;
              ^~
../../../src/mdlib/vsite.c:767:11: warning: unused variable 'fy' [-Wunused-variable]
   real fx,fy,fz,c,invl,fproj,a1;
           ^~
../../../src/mdlib/vsite.c:767:8: warning: unused variable 'fx' [-Wunused-variable]
   real fx,fy,fz,c,invl,fproj,a1;
        ^~
../../../src/mdlib/vsite.c: In function 'spread_vsite_f':
../../../src/mdlib/vsite.c:1255:19: warning: unused variable 'm' [-Wunused-variable]
   int       i,inc,m,nra,nr,tp,ftype;
                   ^
../../../src/mdlib/vsite.c: In function 'count_intercg_vsite':
../../../src/mdlib/vsite.c:1409:11: warning: unused variable 'mt' [-Wunused-variable]
   int  mb,mt,ftype,nral,i,cg,a;
           ^~
../../../src/mdlib/vsite.c: In function 'get_vsite_pbc':
../../../src/mdlib/vsite.c:1448:38: warning: unused variable 'cg_c' [-Wunused-variable]
   int  ftype,nral,i,j,vsi,vsite,cg_v,cg_c,a,nc3=0;
                                      ^~~~
../../../src/mdlib/vsite.c: In function 'init_vsite':
../../../src/mdlib/vsite.c:1559:13: warning: unused variable 'cg' [-Wunused-variable]
   int *a2cg,cg;
             ^~
In file included from ../../../src/mdlib/vsite.c:46:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/vsite.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_fft_fftw3.lo ../../../src/mdlib/gmx_fft_fftw3.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/gmx_fft_fftw3.c  -fPIC -DPIC -o .libs/gmx_fft_fftw3.o
In file included from ../../../include/gmx_fft.h:41,
                 from ../../../src/mdlib/gmx_fft_fftw3.c:27:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o qmmm.lo ../../../src/mdlib/qmmm.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/qmmm.c  -fPIC -DPIC -o .libs/qmmm.o
../../../src/mdlib/qmmm.c: In function 'update_QMMMrec':
../../../src/mdlib/qmmm.c:725:6: warning: unused variable 'MMatoms' [-Wunused-variable]
     *MMatoms;
      ^~~~~~~
../../../src/mdlib/qmmm.c:721:17: warning: variable 'QMMMlist_lr' set but not used [-Wunused-but-set-variable]
     QMMMlist_sr,QMMMlist_lr;
                 ^~~~~~~~~~~
At top level:
../../../src/mdlib/qmmm.c:131:12: warning: 'int_comp' defined but not used [-Wunused-function]
 static int int_comp(const void *a,const void *b){
            ^~~~~~~~
In file included from ../../../src/mdlib/qmmm.c:60:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/qmmm.c:49:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/qmmm.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/qmmm.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o domdec.lo ../../../src/mdlib/domdec.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/domdec.c  -fPIC -DPIC -o .libs/domdec.o
../../../src/mdlib/domdec.c: In function 'dd_move_cellx':
../../../src/mdlib/domdec.c:785:41: warning: unused variable 'k' [-Wunused-variable]
     int  d,d1,dim,dim1,pos,buf_size,i,j,k,p,npulse;
                                         ^
../../../src/mdlib/domdec.c:785:19: warning: unused variable 'dim1' [-Wunused-variable]
     int  d,d1,dim,dim1,pos,buf_size,i,j,k,p,npulse;
                   ^~~~
../../../src/mdlib/domdec.c: In function 'dd_collect_vec':
../../../src/mdlib/domdec.c:1212:11: warning: unused variable 'buf' [-Wunused-variable]
     rvec *buf=NULL;
           ^~~
../../../src/mdlib/domdec.c:1211:18: warning: unused variable 'nalloc' [-Wunused-variable]
     int  n,i,c,a,nalloc=0;
                  ^~~~~~
../../../src/mdlib/domdec.c:1211:16: warning: unused variable 'a' [-Wunused-variable]
     int  n,i,c,a,nalloc=0;
                ^
../../../src/mdlib/domdec.c:1211:14: warning: unused variable 'c' [-Wunused-variable]
     int  n,i,c,a,nalloc=0;
              ^
../../../src/mdlib/domdec.c:1211:12: warning: unused variable 'i' [-Wunused-variable]
     int  n,i,c,a,nalloc=0;
            ^
../../../src/mdlib/domdec.c:1211:10: warning: unused variable 'n' [-Wunused-variable]
     int  n,i,c,a,nalloc=0;
          ^
../../../src/mdlib/domdec.c:1210:26: warning: unused variable 'ma' [-Wunused-variable]
     gmx_domdec_master_t *ma;
                          ^~
../../../src/mdlib/domdec.c: In function 'dd_distribute_vec_scatterv':
../../../src/mdlib/domdec.c:1427:18: warning: unused variable 'nalloc' [-Wunused-variable]
     int  n,i,c,a,nalloc=0;
                  ^~~~~~
../../../src/mdlib/domdec.c: In function 'gmx_ddcoord2pmeindex':
../../../src/mdlib/domdec.c:1805:28: warning: unused variable 'nc' [-Wunused-variable]
     ivec coords,coords_pme,nc;
                            ^~
../../../src/mdlib/domdec.c:1805:17: warning: unused variable 'coords_pme' [-Wunused-variable]
     ivec coords,coords_pme,nc;
                 ^~~~~~~~~~
../../../src/mdlib/domdec.c: In function 'dd_simnode2pmenode':
../../../src/mdlib/domdec.c:1874:16: warning: unused variable 'coord_pme' [-Wunused-variable]
     ivec coord,coord_pme;
                ^~~~~~~~~
../../../src/mdlib/domdec.c:1874:10: warning: unused variable 'coord' [-Wunused-variable]
     ivec coord,coord_pme;
          ^~~~~
../../../src/mdlib/domdec.c: In function 'receive_vir_ener':
../../../src/mdlib/domdec.c:2005:30: warning: unused variable 'rank' [-Wunused-variable]
     int  pmenode,coords[DIM],rank;
                              ^~~~
../../../src/mdlib/domdec.c:2005:18: warning: unused variable 'coords' [-Wunused-variable]
     int  pmenode,coords[DIM],rank;
                  ^~~~~~
../../../src/mdlib/domdec.c: In function 'make_dd_indices':
../../../src/mdlib/domdec.c:2107:11: warning: variable 'bLocalCG' set but not used [-Wunused-but-set-variable]
     char *bLocalCG;
           ^~~~~~~~
../../../src/mdlib/domdec.c: In function 'check_bLocalCG':
../../../src/mdlib/domdec.c:2162:9: warning: unused variable 'ncg' [-Wunused-variable]
     int ncg,i,ngl,nerr;
         ^~~
../../../src/mdlib/domdec.c: In function 'dd_redistribute_cg':
../../../src/mdlib/domdec.c:3706:49: warning: unused variable 'cell_d' [-Wunused-variable]
     int  c,i,cg,k,k0,k1,d,dim,dim2,dir,d2,d3,d4,cell_d;
                                                 ^~~~~~
../../../src/mdlib/domdec.c:3706:46: warning: unused variable 'd4' [-Wunused-variable]
     int  c,i,cg,k,k0,k1,d,dim,dim2,dir,d2,d3,d4,cell_d;
                                              ^~
../../../src/mdlib/domdec.c: In function 'get_load_distribution':
../../../src/mdlib/domdec.c:4326:16: warning: unused variable 'cid' [-Wunused-variable]
     int  d,dim,cid,i,pos;
                ^~~
../../../src/mdlib/domdec.c: In function 'setup_dd_grid':
../../../src/mdlib/domdec.c:4781:10: warning: unused variable 'bZYX' [-Wunused-variable]
     bool bZYX;
          ^~~~
../../../src/mdlib/domdec.c: In function 'make_pp_communicator':
../../../src/mdlib/domdec.c:4944:10: warning: unused variable 'periods' [-Wunused-variable]
     ivec periods;
          ^~~~~~~
../../../src/mdlib/domdec.c:4943:18: warning: unused variable 'buf' [-Wunused-variable]
     int  i,rank,*buf;
                  ^~~
../../../src/mdlib/domdec.c:4943:12: warning: unused variable 'rank' [-Wunused-variable]
     int  i,rank,*buf;
            ^~~~
../../../src/mdlib/domdec.c:4943:10: warning: unused variable 'i' [-Wunused-variable]
     int  i,rank,*buf;
          ^
../../../src/mdlib/domdec.c:4942:24: warning: variable 'comm' set but not used [-Wunused-but-set-variable]
     gmx_domdec_comm_t *comm;
                        ^~~~
../../../src/mdlib/domdec.c: In function 'receive_ddindex2simnodeid':
../../../src/mdlib/domdec.c:5069:11: warning: unused variable 'buf' [-Wunused-variable]
     int  *buf;
           ^~~
../../../src/mdlib/domdec.c:5068:24: warning: variable 'comm' set but not used [-Wunused-but-set-variable]
     gmx_domdec_comm_t *comm;
                        ^~~~
../../../src/mdlib/domdec.c: In function 'split_communicator':
../../../src/mdlib/domdec.c:5131:10: warning: unused variable 'periods' [-Wunused-variable]
     ivec periods;
          ^~~~~~~
../../../src/mdlib/domdec.c:5129:12: warning: unused variable 'rank' [-Wunused-variable]
     int  i,rank;
            ^~~~
../../../src/mdlib/domdec.c: In function 'check_dlb_support':
../../../src/mdlib/domdec.c:5598:9: warning: label 'edlbYES' defined but not used [-Wunused-label]
         edlbYES:
         ^~~~~~~
../../../src/mdlib/domdec.c:5594:9: warning: label 'edlbAUTO' defined but not used [-Wunused-label]
         edlbAUTO:
         ^~~~~~~~
../../../src/mdlib/domdec.c:5592:9: warning: label 'edlbNO' defined but not used [-Wunused-label]
         edlbNO:
         ^~~~~~
../../../src/mdlib/domdec.c:5553:19: warning: unused variable 'dd' [-Wunused-variable]
     gmx_domdec_t *dd;
                   ^~
../../../src/mdlib/domdec.c: In function 'init_domain_decomposition':
../../../src/mdlib/domdec.c:5652:14: warning: unused variable 'j' [-Wunused-variable]
     int  d,i,j;
              ^
../../../src/mdlib/domdec.c:5652:12: warning: unused variable 'i' [-Wunused-variable]
     int  d,i,j;
            ^
../../../src/mdlib/domdec.c:5652:10: warning: unused variable 'd' [-Wunused-variable]
     int  d,i,j;
          ^
../../../src/mdlib/domdec.c: In function 'turn_on_dlb':
../../../src/mdlib/domdec.c:6010:10: warning: unused variable 'buf' [-Wunused-variable]
     char buf[STRLEN];
          ^~~
../../../src/mdlib/domdec.c: In function 'dd_init_bondeds':
../../../src/mdlib/domdec.c:6086:10: warning: unused variable 'd' [-Wunused-variable]
     int  d;
          ^
../../../src/mdlib/domdec.c:6085:10: warning: unused variable 'bBondComm' [-Wunused-variable]
     bool bBondComm;
          ^~~~~~~~~
../../../src/mdlib/domdec.c: In function 'setup_dd_communication':
../../../src/mdlib/domdec.c:6486:64: warning: unused variable 'inv_ncg' [-Wunused-variable]
     real r_mb,r_comm2,r_scomm2,r_bcomm2,r,r_0,r_1,r2,rb2,r2inc,inv_ncg,tric_sh;
                                                                ^~~~~~~
../../../src/mdlib/domdec.c:6486:58: warning: unused variable 'r2inc' [-Wunused-variable]
     real r_mb,r_comm2,r_scomm2,r_bcomm2,r,r_0,r_1,r2,rb2,r2inc,inv_ncg,tric_sh;
                                                          ^~~~~
../../../src/mdlib/domdec.c:6486:47: warning: unused variable 'r_1' [-Wunused-variable]
     real r_mb,r_comm2,r_scomm2,r_bcomm2,r,r_0,r_1,r2,rb2,r2inc,inv_ncg,tric_sh;
                                               ^~~
../../../src/mdlib/domdec.c:6486:43: warning: unused variable 'r_0' [-Wunused-variable]
     real r_mb,r_comm2,r_scomm2,r_bcomm2,r,r_0,r_1,r2,rb2,r2inc,inv_ncg,tric_sh;
                                           ^~~
../../../src/mdlib/domdec.c:6486:23: warning: unused variable 'r_scomm2' [-Wunused-variable]
     real r_mb,r_comm2,r_scomm2,r_bcomm2,r,r_0,r_1,r2,rb2,r2inc,inv_ncg,tric_sh;
                       ^~~~~~~~
../../../src/mdlib/domdec.c:6486:10: warning: unused variable 'r_mb' [-Wunused-variable]
     real r_mb,r_comm2,r_scomm2,r_bcomm2,r,r_0,r_1,r2,rb2,r2inc,inv_ncg,tric_sh;
          ^~~~
../../../src/mdlib/domdec.c: In function 'dd_partition_system':
../../../src/mdlib/domdec.c:7481:12: warning: unused variable 'j' [-Wunused-variable]
     int  i,j,n,cg0=0,ncg_home_old=-1;
            ^
At top level:
../../../src/mdlib/domdec.c:1781:13: warning: 'dd_pmenodes' defined but not used [-Wunused-function]
 static int *dd_pmenodes(t_commrec *cr)
             ^~~~~~~~~~~
In file included from ../../../include/mdrun.h:50,
                 from ../../../src/mdlib/domdec.c:44:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../include/pme.h:46,
                 from ../../../src/mdlib/domdec.c:41:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/mdlib/domdec.c:31:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/domdec.c:31:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -version-info 5:0:0 -lgslcblas  -o libmd_d.la -rpath /usr/lib calcmu.lo calcvir.lo constr.lo coupling.lo domdec.lo domdec_con.lo domdec_network.lo domdec_setup.lo domdec_top.lo ebin.lo edsam.lo ewald.lo fftgrid.lo force.lo ghat.lo init.lo mdatom.lo mdebin.lo minimize.lo mvxvf.lo ns.lo nsgrid.lo perf_est.lo pme.lo pme_pp.lo pppm.lo partdec.lo pull.lo pullutil.lo rf_util.lo shakef.lo sim_util.lo shellfc.lo stat.lo tables.lo tgroup.lo update.lo vcm.lo vsite.lo wall.lo wnblist.lo csettle.lo clincs.lo qmmm.lo gmx_fft.lo gmx_parallel_3dfft.lo gmx_wallcycle.lo qm_gaussian.lo gmx_fft_fftw3.lo ../gmxlib/libgmx_d.la	 -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
i586-alt-linux-gcc -shared  .libs/calcmu.o .libs/calcvir.o .libs/constr.o .libs/coupling.o .libs/domdec.o .libs/domdec_con.o .libs/domdec_network.o .libs/domdec_setup.o .libs/domdec_top.o .libs/ebin.o .libs/edsam.o .libs/ewald.o .libs/fftgrid.o .libs/force.o .libs/ghat.o .libs/init.o .libs/mdatom.o .libs/mdebin.o .libs/minimize.o .libs/mvxvf.o .libs/ns.o .libs/nsgrid.o .libs/perf_est.o .libs/pme.o .libs/pme_pp.o .libs/pppm.o .libs/partdec.o .libs/pull.o .libs/pullutil.o .libs/rf_util.o .libs/shakef.o .libs/sim_util.o .libs/shellfc.o .libs/stat.o .libs/tables.o .libs/tgroup.o .libs/update.o .libs/vcm.o .libs/vsite.o .libs/wall.o .libs/wnblist.o .libs/csettle.o .libs/clincs.o .libs/qmmm.o .libs/gmx_fft.o .libs/gmx_parallel_3dfft.o .libs/gmx_wallcycle.o .libs/qm_gaussian.o .libs/gmx_fft_fftw3.o  -lgslcblas ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath  -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wl,-soname -Wl,libmd_d.so.5 -o .libs/libmd_d.so.5.0.0
(cd .libs && rm -f libmd_d.so.5 && ln -s libmd_d.so.5.0.0 libmd_d.so.5)
(cd .libs && rm -f libmd_d.so && ln -s libmd_d.so.5.0.0 libmd_d.so)
creating libmd_d.la
(cd .libs && rm -f libmd_d.la && ln -s ../libmd_d.la libmd_d.la)
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
Making all in kernel
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o compute_io.lo ../../../src/kernel/compute_io.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/compute_io.c  -fPIC -DPIC -o .libs/compute_io.o
../../../src/kernel/compute_io.c: In function 'compute_io':
../../../src/kernel/compute_io.c:49:53: warning: unused variable 'nfep' [-Wunused-variable]
   int nstx=0,nstv=0,nstf=0,nste=0,nstlog=0,nstxtc=0,nfep=0;
                                                     ^~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o add_par.lo ../../../src/kernel/add_par.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/add_par.c  -fPIC -DPIC -o .libs/add_par.o
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/add_par.c:46:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/kernel/add_par.c:44:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gpp_bond_atomtype.lo ../../../src/kernel/gpp_bond_atomtype.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/gpp_bond_atomtype.c  -fPIC -DPIC -o .libs/gpp_bond_atomtype.o
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o genhydro.lo ../../../src/kernel/genhydro.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/genhydro.c  -fPIC -DPIC -o .libs/genhydro.o
In file included from ../../../src/kernel/hackblock.h:42,
                 from ../../../src/kernel/genhydro.h:41,
                 from ../../../src/kernel/genhydro.c:56:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/genhydro.h:40,
                 from ../../../src/kernel/genhydro.c:56:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/genhydro.c:51:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/genhydro.c:50:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/genhydro.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/genhydro.c:46:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o convparm.lo ../../../src/kernel/convparm.c
mkdir .libs
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/convparm.c  -fPIC -DPIC -o .libs/convparm.o
../../../src/kernel/convparm.c: In function 'new_interaction_list':
../../../src/kernel/convparm.c:404:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/kernel/convparm.c: In function 'convert_params':
../../../src/kernel/convparm.c:414:12: warning: unused variable 'j' [-Wunused-variable]
   int    i,j,maxtypes,mt;
            ^
At top level:
../../../src/kernel/convparm.c:402:13: warning: 'new_interaction_list' defined but not used [-Wunused-function]
 static void new_interaction_list(t_ilist *ilist)
             ^~~~~~~~~~~~~~~~~~~~
In file included from ../../../src/kernel/topio.h:41,
                 from ../../../src/kernel/convparm.c:48:
../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable]
 static const char *couple_lam[ecouplamNR+1]    = {
                    ^~~~~~~~~~
../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable]
 static const char *constraints[eshNR+1]    = {
                    ^~~~~~~~~~~
In file included from ../../../src/kernel/readir.h:43,
                 from ../../../src/kernel/topio.h:41,
                 from ../../../src/kernel/convparm.c:48:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/readir.h:42,
                 from ../../../src/kernel/topio.h:41,
                 from ../../../src/kernel/convparm.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/convparm.c:44:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/convparm.c:44:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmxcpp.lo ../../../src/kernel/gmxcpp.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/gmxcpp.c  -fPIC -DPIC -o .libs/gmxcpp.o
../../../src/kernel/gmxcpp.c: In function 'cpp_close_file':
../../../src/kernel/gmxcpp.c:453:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o h_db.lo ../../../src/kernel/h_db.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/h_db.c  -fPIC -DPIC -o .libs/h_db.o
../../../src/kernel/h_db.c: In function 'dump_h_db':
../../../src/kernel/h_db.c:113:10: warning: unused variable 'j' [-Wunused-variable]
   int  i,j,k;
          ^
In file included from ../../../src/kernel/hackblock.h:42,
                 from ../../../src/kernel/h_db.h:41,
                 from ../../../src/kernel/h_db.c:47:
At top level:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/h_db.h:41,
                 from ../../../src/kernel/h_db.c:47:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o grompp.o ../../../src/kernel/grompp.c
../../../src/kernel/grompp.c: In function 'new_status':
../../../src/kernel/grompp.c:300:3: warning: statement with no effect [-Wunused-value]
   mbs;
   ^~~
../../../src/kernel/grompp.c: In function 'read_posres':
../../../src/kernel/grompp.c:478:10: warning: unused variable 'bFirst' [-Wunused-variable]
   bool   bFirst = TRUE;
          ^~~~~~
../../../src/kernel/grompp.c: In function 'gen_posres':
../../../src/kernel/grompp.c:604:9: warning: unused variable 'j' [-Wunused-variable]
   int i,j;
         ^
../../../src/kernel/grompp.c:604:7: warning: unused variable 'i' [-Wunused-variable]
   int i,j;
       ^
../../../src/kernel/grompp.c: In function 'main':
../../../src/kernel/grompp.c:769:16: warning: unused variable 'natoms' [-Wunused-variable]
   int          natoms,nvsite,comb,mt;
                ^~~~~~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/pdb2top.h:43,
                 from ../../../src/kernel/add_par.h:41,
                 from ../../../src/kernel/grompp.c:74:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/kernel/grompp.c:60:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/grompp.c:60:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/grompp.c:54:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/kernel/grompp.c:50:
../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable]
 static const char *couple_lam[ecouplamNR+1]    = {
                    ^~~~~~~~~~
../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable]
 static const char *constraints[eshNR+1]    = {
                    ^~~~~~~~~~~
In file included from ../../../src/kernel/readir.h:43,
                 from ../../../src/kernel/grompp.c:50:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/readir.h:42,
                 from ../../../src/kernel/grompp.c:50:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
../../../src/kernel/grompp.c: In function 'main':
../../../src/kernel/grompp.c:380:19: warning: '%s' directive writing up to 4095 bytes into a region of size between 4045 and 4055 [-Wformat-overflow=]
       sprintf(buf,"%d non-matching atom name%s\n"
                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/kernel/grompp.c:856:14:
   new_status(fn,opt2fn_null("-pp",NFILE,fnm),opt2fn("-c",NFILE,fnm),
              ~~    
../../../src/kernel/grompp.c:381:25: note: format string is defined here
        "atom names from %s will be used\n"
                         ^~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/kernel/grompp.c:46:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 89 or more bytes (assuming 4194) into a destination of size 4096
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o pgutil.lo ../../../src/kernel/pgutil.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/pgutil.c  -fPIC -DPIC -o .libs/pgutil.o
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gen_ad.lo ../../../src/kernel/gen_ad.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/gen_ad.c  -fPIC -DPIC -o .libs/gen_ad.o
../../../src/kernel/gen_ad.c: In function 'get_impropers':
../../../src/kernel/gen_ad.c:437:25: warning: unused variable 'r' [-Wunused-variable]
   int       nidih,i,j,k,r,start,ninc,nalloc;
                         ^
../../../src/kernel/gen_ad.c:436:15: warning: unused variable 'hbidih' [-Wunused-variable]
   t_rbonded  *hbidih;
               ^~~~~~
../../../src/kernel/gen_ad.c:434:14: warning: unused variable 'a0' [-Wunused-variable]
   char      *a0;
              ^~
../../../src/kernel/gen_ad.c: In function 'clean_excls':
../../../src/kernel/gen_ad.c:576:26: warning: unused variable 'n' [-Wunused-variable]
   int i,j,j1,k,k1,l,l1,m,n,e;
                          ^
../../../src/kernel/gen_ad.c:576:24: warning: unused variable 'm' [-Wunused-variable]
   int i,j,j1,k,k1,l,l1,m,n,e;
                        ^
../../../src/kernel/gen_ad.c: In function 'generate_excls':
../../../src/kernel/gen_ad.c:618:28: warning: unused variable 'e' [-Wunused-variable]
   int i,j,j1,k,k1,l,l1,m,n,e,N;
                            ^
../../../src/kernel/gen_ad.c:618:24: warning: unused variable 'm' [-Wunused-variable]
   int i,j,j1,k,k1,l,l1,m,n,e,N;
                        ^
../../../src/kernel/gen_ad.c:618:21: warning: unused variable 'l1' [-Wunused-variable]
   int i,j,j1,k,k1,l,l1,m,n,e,N;
                     ^~
../../../src/kernel/gen_ad.c:618:19: warning: unused variable 'l' [-Wunused-variable]
   int i,j,j1,k,k1,l,l1,m,n,e,N;
                   ^
../../../src/kernel/gen_ad.c:618:16: warning: unused variable 'k1' [-Wunused-variable]
   int i,j,j1,k,k1,l,l1,m,n,e,N;
                ^~
../../../src/kernel/gen_ad.c:618:14: warning: unused variable 'k' [-Wunused-variable]
   int i,j,j1,k,k1,l,l1,m,n,e,N;
              ^
../../../src/kernel/gen_ad.c:618:11: warning: unused variable 'j1' [-Wunused-variable]
   int i,j,j1,k,k1,l,l1,m,n,e,N;
           ^~
At top level:
../../../src/kernel/gen_ad.c:327:13: warning: 'dump_param' defined but not used [-Wunused-function]
 static void dump_param(FILE *fp,char *title,int n,t_param ps[])
             ^~~~~~~~~~
../../../src/kernel/gen_ad.c:289:13: warning: 'ideq' defined but not used [-Wunused-function]
 static bool ideq(t_param *p1, t_param *p2)
             ^~~~
../../../src/kernel/gen_ad.c:114:13: warning: 'aeq' defined but not used [-Wunused-function]
 static bool aeq(t_param *p1, t_param *p2)
             ^~~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/resall.h:41,
                 from ../../../src/kernel/gen_ad.c:57:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/kernel/topio.h:41,
                 from ../../../src/kernel/gen_ad.c:51:
../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable]
 static const char *couple_lam[ecouplamNR+1]    = {
                    ^~~~~~~~~~
../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable]
 static const char *constraints[eshNR+1]    = {
                    ^~~~~~~~~~~
In file included from ../../../src/kernel/readir.h:42,
                 from ../../../src/kernel/topio.h:41,
                 from ../../../src/kernel/gen_ad.c:51:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/toputil.h:40,
                 from ../../../src/kernel/gen_ad.c:50:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/gen_ad.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/gen_ad.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gpp_atomtype.lo ../../../src/kernel/gpp_atomtype.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/gpp_atomtype.c  -fPIC -DPIC -o .libs/gpp_atomtype.o
In file included from ../../../src/kernel/topdirs.h:40,
                 from ../../../src/kernel/gpp_atomtype.c:45:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o hizzie.lo ../../../src/kernel/hizzie.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/hizzie.c  -fPIC -DPIC -o .libs/hizzie.o
../../../src/kernel/hizzie.c: In function 'set_histp':
../../../src/kernel/hizzie.c:195:8: warning: unused variable 'd' [-Wunused-variable]
   real d;
        ^
../../../src/kernel/hizzie.c:192:27: warning: unused variable 'his0' [-Wunused-variable]
   int  i,j,nd,na,aj,hisnr,his0,type=-1;
                           ^~~~
../../../src/kernel/hizzie.c:192:18: warning: unused variable 'aj' [-Wunused-variable]
   int  i,j,nd,na,aj,hisnr,his0,type=-1;
                  ^~
../../../src/kernel/hizzie.c:188:15: warning: unused variable 'bHaveH' [-Wunused-variable]
   bool *hbond,bHaveH=FALSE;
               ^~~~~~
In file included from ../../../src/kernel/toputil.h:40,
                 from ../../../src/kernel/hizzie.c:48:
At top level:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/hizzie.c:46:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/hizzie.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/hizzie.c:44:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o hackblock.lo ../../../src/kernel/hackblock.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/hackblock.c  -fPIC -DPIC -o .libs/hackblock.o
In file included from ../../../src/kernel/hackblock.c:44:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/hackblock.c:44:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/hackblock.h:42,
                 from ../../../src/kernel/hackblock.c:42:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/hackblock.c:42:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o resall.lo ../../../src/kernel/resall.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/resall.c  -fPIC -DPIC -o .libs/resall.o
In file included from ../../../src/kernel/hackblock.h:42,
                 from ../../../src/kernel/resall.h:41,
                 from ../../../src/kernel/resall.c:49:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/resall.h:41,
                 from ../../../src/kernel/resall.c:49:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o sorting.lo ../../../src/kernel/sorting.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/sorting.c  -fPIC -DPIC -o .libs/sorting.o
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o specbond.lo ../../../src/kernel/specbond.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/specbond.c  -fPIC -DPIC -o .libs/specbond.o
In file included from ../../../src/kernel/specbond.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/specbond.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/pdb2top.h:41,
                 from ../../../src/kernel/specbond.h:40,
                 from ../../../src/kernel/specbond.c:47:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/specbond.c:43:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
../../../src/kernel/specbond.c: In function 'mk_specbonds':
../../../src/kernel/specbond.c:236:19: warning: '%d' directive writing between 1 and 11 bytes into a region of size 10 [-Wformat-overflow=]
    sprintf(buf,"%s%d",*pdba->resname[pdba->atom[sgp[i]].resnr],
                   ^~
../../../src/kernel/specbond.c:236:16: note: directive argument in the range [-2147483647, 2147483647]
    sprintf(buf,"%s%d",*pdba->resname[pdba->atom[sgp[i]].resnr],
                ^~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../include/typedefs.h:52,
                 from ../../../src/kernel/specbond.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 2 or more bytes (assuming 12) into a destination of size 10
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/kernel/specbond.c:245:19: warning: '%d' directive writing between 1 and 11 bytes into a region of size 10 [-Wformat-overflow=]
    sprintf(buf,"%s%d",*pdba->atomname[sgp[i]], sgp[i]+1);
                   ^~
../../../src/kernel/specbond.c:245:16: note: directive argument in the range [-2147483647, 2147483647]
    sprintf(buf,"%s%d",*pdba->atomname[sgp[i]], sgp[i]+1);
                ^~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../include/typedefs.h:52,
                 from ../../../src/kernel/specbond.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 2 or more bytes (assuming 12) into a destination of size 10
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/kernel/specbond.c:252:19: warning: '%d' directive writing between 1 and 11 bytes into a region of size 10 [-Wformat-overflow=]
    sprintf(buf,"%s%d",*pdba->resname[pdba->atom[sgp[i]].resnr],
                   ^~
../../../src/kernel/specbond.c:252:16: note: directive argument in the range [-2147483647, 2147483647]
    sprintf(buf,"%s%d",*pdba->resname[pdba->atom[sgp[i]].resnr],
                ^~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../include/typedefs.h:52,
                 from ../../../src/kernel/specbond.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 2 or more bytes (assuming 12) into a destination of size 10
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/kernel/specbond.c:255:19: warning: '%d' directive writing between 1 and 11 bytes into a region of size 10 [-Wformat-overflow=]
    sprintf(buf,"%s%d", *pdba->atomname[sgp[i]], sgp[i]+1);
                   ^~
../../../src/kernel/specbond.c:255:16: note: directive argument in the range [-2147483647, 2147483647]
    sprintf(buf,"%s%d", *pdba->atomname[sgp[i]], sgp[i]+1);
                ^~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../include/typedefs.h:52,
                 from ../../../src/kernel/specbond.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 2 or more bytes (assuming 12) into a destination of size 10
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o topdirs.lo ../../../src/kernel/topdirs.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/topdirs.c  -fPIC -DPIC -o .libs/topdirs.o
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o tomorse.lo ../../../src/kernel/tomorse.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/tomorse.c  -fPIC -DPIC -o .libs/tomorse.o
In file included from ../../../src/kernel/tomorse.c:46:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o ter_db.lo ../../../src/kernel/ter_db.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/ter_db.c  -fPIC -DPIC -o .libs/ter_db.o
../../../src/kernel/ter_db.c: In function 'print_ter_db':
../../../src/kernel/ter_db.c:105:20: warning: unused variable 'nname' [-Wunused-variable]
   char buf[STRLEN],nname[STRLEN];
                    ^~~~~
../../../src/kernel/ter_db.c: In function 'filter_ter':
../../../src/kernel/ter_db.c:301:12: warning: unused variable 's2' [-Wunused-variable]
   char *s,*s2,*c;
            ^~
../../../src/kernel/ter_db.c:299:13: warning: unused variable 'len' [-Wunused-variable]
   int i,j,n,len,none_idx;
             ^~~
In file included from ../../../src/kernel/hackblock.h:42,
                 from ../../../src/kernel/resall.h:41,
                 from ../../../src/kernel/ter_db.c:45:
At top level:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/resall.h:41,
                 from ../../../src/kernel/ter_db.c:45:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o readpull.lo ../../../src/kernel/readpull.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/readpull.c  -fPIC -DPIC -o .libs/readpull.o
../../../src/kernel/readpull.c: In function 'read_pullparams':
../../../src/kernel/readpull.c:102:22: warning: unused variable 'nchar' [-Wunused-variable]
   int  ninp,nerror,i,nchar,ndim,nscan,m;
                      ^~~~~
In file included from ../../../src/kernel/readpull.c:54:
At top level:
../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable]
 static const char *couple_lam[ecouplamNR+1]    = {
                    ^~~~~~~~~~
../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable]
 static const char *constraints[eshNR+1]    = {
                    ^~~~~~~~~~~
In file included from ../../../src/kernel/readir.h:43,
                 from ../../../src/kernel/readpull.c:54:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/readpull.c:46:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/readpull.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/readpull.c:45:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o topexcl.lo ../../../src/kernel/topexcl.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/topexcl.c  -fPIC -DPIC -o .libs/topexcl.o
In file included from ../../../include/gpp_nextnb.h:40,
                 from ../../../src/kernel/topexcl.c:45:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o toputil.lo ../../../src/kernel/toputil.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/toputil.c  -fPIC -DPIC -o .libs/toputil.o
../../../src/kernel/toputil.c:135:13: warning: 'print_nbt' defined but not used [-Wunused-function]
 static void print_nbt (FILE *out,char *title,t_atomtype at,
             ^~~~~~~~~
In file included from ../../../src/kernel/topdirs.h:40,
                 from ../../../src/kernel/toputil.c:45:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o topshake.lo ../../../src/kernel/topshake.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/topshake.c  -fPIC -DPIC -o .libs/topshake.o
../../../src/kernel/topshake.c: In function 'make_shake':
../../../src/kernel/topshake.c:98:19: warning: unused variable 'b' [-Wunused-variable]
   int          nb,b,i,j,ftype,ftype_a;
                   ^
../../../src/kernel/topshake.c:98:16: warning: unused variable 'nb' [-Wunused-variable]
   int          nb,b,i,j,ftype,ftype_a;
                ^~
In file included from ../../../src/kernel/topshake.c:46:
At top level:
../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable]
 static const char *couple_lam[ecouplamNR+1]    = {
                    ^~~~~~~~~~
../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable]
 static const char *constraints[eshNR+1]    = {
                    ^~~~~~~~~~~
In file included from ../../../src/kernel/readir.h:43,
                 from ../../../src/kernel/topshake.c:46:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/readir.h:42,
                 from ../../../src/kernel/topshake.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o pdb2top.lo ../../../src/kernel/pdb2top.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/pdb2top.c  -fPIC -DPIC -o .libs/pdb2top.o
../../../src/kernel/pdb2top.c: In function 'missing_atoms':
../../../src/kernel/pdb2top.c:75:16: warning: unused variable 'bRet' [-Wunused-variable]
   bool bFound, bRet;
                ^~~~
In file included from ../../../src/kernel/topio.h:41,
                 from ../../../src/kernel/pdb2top.c:57:
At top level:
../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable]
 static const char *couple_lam[ecouplamNR+1]    = {
                    ^~~~~~~~~~
../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable]
 static const char *constraints[eshNR+1]    = {
                    ^~~~~~~~~~~
In file included from ../../../src/kernel/readir.h:42,
                 from ../../../src/kernel/topio.h:41,
                 from ../../../src/kernel/pdb2top.c:57:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/pdb2top.h:43,
                 from ../../../src/kernel/pdb2top.c:50:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/kernel/pdb2top.h:41,
                 from ../../../src/kernel/pdb2top.c:50:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/pdb2top.c:44:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/kernel/pdb2top.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/pdb2top.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o glaasje.o ../../../src/kernel/glaasje.c
../../../src/kernel/glaasje.c: In function 'do_glas':
../../../src/kernel/glaasje.c:55:40: warning: unused variable 'r3' [-Wunused-variable]
   real wd,wdd,zi,fz,dd,d10,d4,d9,d3,r9,r3,sign,cc6,cc12;
                                        ^~
../../../src/kernel/glaasje.c:55:37: warning: unused variable 'r9' [-Wunused-variable]
   real wd,wdd,zi,fz,dd,d10,d4,d9,d3,r9,r3,sign,cc6,cc12;
                                     ^~
In file included from ../../../src/kernel/glaasje.c:44:
At top level:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o xlate.lo ../../../src/kernel/xlate.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/xlate.c  -fPIC -DPIC -o .libs/xlate.o
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gen_vsite.lo ../../../src/kernel/gen_vsite.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/gen_vsite.c  -fPIC -DPIC -o .libs/gen_vsite.o
../../../src/kernel/gen_vsite.c: In function 'read_vsite_database':
../../../src/kernel/gen_vsite.c:150:34: warning: unused variable 'prevdir' [-Wunused-variable]
   int i,j,n,k,nvsite,ntop,curdir,prevdir;
                                  ^~~~~~~
../../../src/kernel/gen_vsite.c:150:9: warning: unused variable 'j' [-Wunused-variable]
   int i,j,n,k,nvsite,ntop,curdir,prevdir;
         ^
../../../src/kernel/gen_vsite.c: In function 'add_vsites':
../../../src/kernel/gen_vsite.c:477:33: warning: unused variable 'bb' [-Wunused-variable]
   int i,j,ftype,other,moreheavy,bb;
                                 ^~
../../../src/kernel/gen_vsite.c: In function 'gen_vsites_6ring':
../../../src/kernel/gen_vsite.c:560:32: warning: variable 'yCE2' set but not used [-Wunused-but-set-variable]
    real xCG,yCG,xCE1,yCE1,xCE2,yCE2;
                                ^~~~
../../../src/kernel/gen_vsite.c:560:27: warning: variable 'xCE2' set but not used [-Wunused-but-set-variable]
    real xCG,yCG,xCE1,yCE1,xCE2,yCE2;
                           ^~~~
../../../src/kernel/gen_vsite.c:560:22: warning: variable 'yCE1' set but not used [-Wunused-but-set-variable]
    real xCG,yCG,xCE1,yCE1,xCE2,yCE2;
                      ^~~~
../../../src/kernel/gen_vsite.c:560:17: warning: variable 'xCE1' set but not used [-Wunused-but-set-variable]
    real xCG,yCG,xCE1,yCE1,xCE2,yCE2;
                 ^~~~
../../../src/kernel/gen_vsite.c:560:13: warning: variable 'yCG' set but not used [-Wunused-but-set-variable]
    real xCG,yCG,xCE1,yCE1,xCE2,yCE2;
             ^~~
../../../src/kernel/gen_vsite.c: In function 'calc_vsite3_param':
../../../src/kernel/gen_vsite.c:693:13: warning: variable 'b_ik' set but not used [-Wunused-but-set-variable]
   real b_ij,b_ik;
             ^~~~
../../../src/kernel/gen_vsite.c:693:8: warning: variable 'b_ij' set but not used [-Wunused-but-set-variable]
   real b_ij,b_ik;
        ^~~~
../../../src/kernel/gen_vsite.c: In function 'gen_vsites_trp':
../../../src/kernel/gen_vsite.c:741:12: warning: unused variable 'c' [-Wunused-variable]
   real a,b,c[MAXFORCEPARAM];
            ^
../../../src/kernel/gen_vsite.c:740:14: warning: unused variable 'mtot' [-Wunused-variable]
   real mwtot,mtot,mM[NMASS],dCBM1,dCBM2,dM1M2;
              ^~~~
../../../src/kernel/gen_vsite.c:740:8: warning: unused variable 'mwtot' [-Wunused-variable]
   real mwtot,mtot,mM[NMASS],dCBM1,dCBM2,dM1M2;
        ^~~~~
../../../src/kernel/gen_vsite.c:738:8: warning: unused variable 'xM' [-Wunused-variable]
   real xM[NMASS];
        ^~
../../../src/kernel/gen_vsite.c:735:8: warning: variable 'a_CB_CG_CD1' set but not used [-Wunused-but-set-variable]
   real a_CB_CG_CD1,a_CD2_CG_CD1,a_CE2_CZ2_HZ2,a_CZ2_CH2_HH2;
        ^~~~~~~~~~~
../../../src/kernel/gen_vsite.c:729:20: warning: unused variable 'dist' [-Wunused-variable]
   real lineA,lineB,dist;
                    ^~~~
../../../src/kernel/gen_vsite.c:729:14: warning: variable 'lineB' set but not used [-Wunused-but-set-variable]
   real lineA,lineB,dist;
              ^~~~~
../../../src/kernel/gen_vsite.c:728:32: warning: unused variable 'I' [-Wunused-variable]
   real xcom[NMASS],ycom[NMASS],I,alpha;
                                ^
../../../src/kernel/gen_vsite.c: In function 'gen_vsites_tyr':
../../../src/kernel/gen_vsite.c:968:8: warning: unused variable 'vmass' [-Wunused-variable]
   real vmass,vdist,mM;
        ^~~~~
../../../src/kernel/gen_vsite.c: In function 'do_vsites':
../../../src/kernel/gen_vsite.c:1332:29: warning: unused variable 'bb' [-Wunused-variable]
   int  Hatoms[4],heavies[4],bb;
                             ^~
In file included from ../../../src/kernel/gen_vsite.c:48:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/gen_vsite.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/gen_vsite.h:43,
                 from ../../../src/kernel/gen_vsite.c:44:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/kernel/gen_vsite.h:41,
                 from ../../../src/kernel/gen_vsite.c:44:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gctio.o ../../../src/kernel/gctio.c
In file included from ../../../src/kernel/gctio.c:49:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/xmdrun.h:50,
                 from ../../../src/kernel/gctio.c:41:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o toppush.lo ../../../src/kernel/toppush.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/toppush.c  -fPIC -DPIC -o .libs/toppush.o
../../../src/kernel/toppush.c: In function 'push_bt':
../../../src/kernel/toppush.c:573:37: warning: variable 'nrfpB' set but not used [-Wunused-but-set-variable]
   int      i,ft,ftype,nn,nrfp,nrfpA,nrfpB;
                                     ^~~~~
../../../src/kernel/toppush.c: In function 'push_dihedraltype':
../../../src/kernel/toppush.c:661:37: warning: variable 'nrfpB' set but not used [-Wunused-but-set-variable]
   int      i,ft,ftype,nn,nrfp,nrfpA,nrfpB,nral;
                                     ^~~~~
../../../src/kernel/toppush.c: In function 'push_nbt':
../../../src/kernel/toppush.c:778:17: warning: unused variable 'sig6' [-Wunused-variable]
   real    cr[4],sig6;
                 ^~~~
../../../src/kernel/toppush.c:776:23: warning: unused variable 'atnr' [-Wunused-variable]
   int     i,f,n,ftype,atnr,nrfp;
                       ^~~~
../../../src/kernel/toppush.c: In function 'push_atom_now':
../../../src/kernel/toppush.c:871:7: warning: unused variable 'j' [-Wunused-variable]
   int j,resnr_diff=-1;
       ^
../../../src/kernel/toppush.c: In function 'push_bond':
../../../src/kernel/toppush.c:1234:18: warning: unused variable 'paramB' [-Wunused-variable]
   t_param  param,paramB,*param_defA,*param_defB;
                  ^~~~~~
In file included from ../../../src/kernel/toppush.c:51:
At top level:
../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable]
 static const char *couple_lam[ecouplamNR+1]    = {
                    ^~~~~~~~~~
../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable]
 static const char *constraints[eshNR+1]    = {
                    ^~~~~~~~~~~
In file included from ../../../src/kernel/readir.h:42,
                 from ../../../src/kernel/toppush.c:51:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/toputil.h:40,
                 from ../../../src/kernel/toppush.c:48:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
../../../src/kernel/toppush.c: In function 'push_at':
../../../src/kernel/toppush.c:446:41: warning: '%s' directive writing up to 4095 bytes into a region of size 236 [-Wformat-overflow=]
     sprintf(errbuf,"Overriding atomtype %s",type);
                                         ^~  ~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/kernel/toppush.c:43:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 21 and 4116 bytes into a destination of size 256
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o ionize.o ../../../src/kernel/ionize.c
../../../src/kernel/ionize.c: In function 'ionize':
../../../src/kernel/ionize.c:735:2: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
  if (bL)
  ^~
../../../src/kernel/ionize.c:737:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
    if (ephot == 2) E_lost += 0.5; /* Real energy should be 2.5 KeV*/
    ^~
In file included from ../../../src/kernel/ionize.c:48:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/ionize.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o repl_ex.o ../../../src/kernel/repl_ex.c
../../../src/kernel/repl_ex.c: In function 'init_replica_exchange':
../../../src/kernel/repl_ex.c:111:8: warning: unused variable 'temp' [-Wunused-variable]
   real temp,pres;
        ^~~~
../../../src/kernel/repl_ex.c: In function 'replica_exchange':
../../../src/kernel/repl_ex.c:560:20: warning: unused variable 'shift' [-Wunused-variable]
   int  exchange=-1,shift;
                    ^~~~~
At top level:
../../../src/kernel/repl_ex.c:544:13: warning: 'write_debug_x' defined but not used [-Wunused-function]
 static void write_debug_x(t_state *state)
             ^~~~~~~~~~~~~
In file included from ../../../src/kernel/repl_ex.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/repl_ex.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/repl_ex.c:46:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o tpbcmp.lo ../../../src/kernel/tpbcmp.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/tpbcmp.c  -fPIC -DPIC -o .libs/tpbcmp.o
../../../src/kernel/tpbcmp.c: In function 'cmp_block':
../../../src/kernel/tpbcmp.c:242:11: warning: unused variable 'k' [-Wunused-variable]
   int i,j,k;
           ^
../../../src/kernel/tpbcmp.c:242:9: warning: unused variable 'j' [-Wunused-variable]
   int i,j,k;
         ^
../../../src/kernel/tpbcmp.c:242:7: warning: unused variable 'i' [-Wunused-variable]
   int i,j,k;
       ^
../../../src/kernel/tpbcmp.c: In function 'cmp_blocka':
../../../src/kernel/tpbcmp.c:252:11: warning: unused variable 'k' [-Wunused-variable]
   int i,j,k;
           ^
../../../src/kernel/tpbcmp.c:252:9: warning: unused variable 'j' [-Wunused-variable]
   int i,j,k;
         ^
../../../src/kernel/tpbcmp.c:252:7: warning: unused variable 'i' [-Wunused-variable]
   int i,j,k;
       ^
../../../src/kernel/tpbcmp.c: In function 'cmp_atom':
../../../src/kernel/tpbcmp.c:265:8: warning: unused variable 'buf' [-Wunused-variable]
   char buf[256];
        ^~~
../../../src/kernel/tpbcmp.c:264:8: warning: unused variable 'i' [-Wunused-variable]
   int  i;
        ^
../../../src/kernel/tpbcmp.c: In function 'cmp_top':
../../../src/kernel/tpbcmp.c:302:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/kernel/tpbcmp.c: In function 'comp_tpx':
../../../src/kernel/tpbcmp.c:567:15: warning: unused variable 'sh' [-Wunused-variable]
   t_tpxheader sh[2];
               ^~
../../../src/kernel/tpbcmp.c: In function 'comp_enx':
../../../src/kernel/tpbcmp.c:723:38: warning: unused variable 'buf' [-Wunused-variable]
   char       **enm1=NULL,**enm2=NULL,buf[256];
                                      ^~~
../../../src/kernel/tpbcmp.c:721:36: warning: unused variable 'block' [-Wunused-variable]
   int        in1,in2,nre,nre1,nre2,block;
                                    ^~~~~
At top level:
../../../src/kernel/tpbcmp.c:77:13: warning: 'cmp_uc' defined but not used [-Wunused-function]
 static void cmp_uc(FILE *fp,char *s,int index,unsigned char i1,unsigned char i2)
             ^~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/tpbcmp.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o topio.lo ../../../src/kernel/topio.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/topio.c  -fPIC -DPIC -o .libs/topio.o
../../../src/kernel/topio.c: In function 'read_topol':
../../../src/kernel/topio.c:474:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
      else
      ^~~~
../../../src/kernel/topio.c:476:8: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else'
        break;
        ^~~~~
../../../src/kernel/topio.c:314:15: warning: unused variable 'block' [-Wunused-variable]
   t_topology *block=NULL;
               ^~~~~
In file included from ../../../src/kernel/topio.h:41,
                 from ../../../src/kernel/topio.c:66:
At top level:
../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable]
 static const char *couple_lam[ecouplamNR+1]    = {
                    ^~~~~~~~~~
../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable]
 static const char *constraints[eshNR+1]    = {
                    ^~~~~~~~~~~
In file included from ../../../src/kernel/readir.h:42,
                 from ../../../src/kernel/topio.h:41,
                 from ../../../src/kernel/topio.c:66:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/vsite_parm.h:41,
                 from ../../../src/kernel/topio.c:59:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o mdrun.o ../../../src/kernel/mdrun.c
../../../src/kernel/mdrun.c: In function 'main':
../../../src/kernel/mdrun.c:387:20: warning: unused variable 'fptest' [-Wunused-variable]
   FILE     *fplog,*fptest;
                    ^~~~~~
../../../src/kernel/mdrun.c:386:12: warning: unused variable 'HaveCheckpoint' [-Wunused-variable]
   bool     HaveCheckpoint;
            ^~~~~~~~~~~~~~
../../../src/kernel/mdrun.c:285:15: warning: unused variable 'bPPPME' [-Wunused-variable]
   static bool bPPPME       = FALSE;
               ^~~~~~
../../../src/kernel/mdrun.c:284:15: warning: unused variable 'bCart' [-Wunused-variable]
   static bool bCart        = FALSE;
               ^~~~~
At top level:
../../../src/kernel/mdrun.c:284:15: warning: 'bCart' defined but not used [-Wunused-variable]
../../../src/kernel/mdrun.c:285:15: warning: 'bPPPME' defined but not used [-Wunused-variable]
   static bool bPPPME       = FALSE;
               ^~~~~~
In file included from ../../../include/pull.h:44,
                 from ../../../include/mdrun.h:56,
                 from ../../../src/kernel/mdrun.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../include/pull.h:44,
                 from ../../../include/mdrun.h:56,
                 from ../../../src/kernel/mdrun.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/mdrun.h:50,
                 from ../../../src/kernel/mdrun.c:49:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/mdrun.c:44:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/mdrun.c:42:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o do_gct.o ../../../src/kernel/do_gct.c
../../../src/kernel/do_gct.c: In function 'init_coupling':
../../../src/kernel/do_gct.c:63:19: warning: unused variable 'atj' [-Wunused-variable]
   int         ati,atj;
                   ^~~
../../../src/kernel/do_gct.c:63:15: warning: unused variable 'ati' [-Wunused-variable]
   int         ati,atj;
               ^~~
../../../src/kernel/do_gct.c:62:26: warning: unused variable 'j' [-Wunused-variable]
   int         i,nc,index,j;
                          ^
../../../src/kernel/do_gct.c:62:20: warning: unused variable 'index' [-Wunused-variable]
   int         i,nc,index,j;
                    ^~~~~
../../../src/kernel/do_gct.c:62:17: warning: unused variable 'nc' [-Wunused-variable]
   int         i,nc,index,j;
                 ^~
../../../src/kernel/do_gct.c:62:15: warning: unused variable 'i' [-Wunused-variable]
   int         i,nc,index,j;
               ^
../../../src/kernel/do_gct.c: In function 'gprod':
../../../src/kernel/do_gct.c:343:8: warning: unused variable 'i' [-Wunused-variable]
   int  i;
        ^
../../../src/kernel/do_gct.c: In function 'do_coupling':
../../../src/kernel/do_gct.c:489:15: warning: unused variable 'bTest' [-Wunused-variable]
   bool        bTest,bPrint;
               ^~~~~
../../../src/kernel/do_gct.c:487:59: warning: unused variable 'xi12' [-Wunused-variable]
   real        Epol,Eintern,Virial,muabs,xiH=-1,xiS=-1,xi6,xi12;
                                                           ^~~~
../../../src/kernel/do_gct.c:487:55: warning: unused variable 'xi6' [-Wunused-variable]
   real        Epol,Eintern,Virial,muabs,xiH=-1,xiS=-1,xi6,xi12;
                                                       ^~~
../../../src/kernel/do_gct.c:486:32: warning: unused variable 'ffc' [-Wunused-variable]
   real        ff6,ff12,ffa,ffb,ffc,ffq,factor,dt,mu_ind;
                                ^~~
../../../src/kernel/do_gct.c:486:28: warning: unused variable 'ffb' [-Wunused-variable]
   real        ff6,ff12,ffa,ffb,ffc,ffq,factor,dt,mu_ind;
                            ^~~
../../../src/kernel/do_gct.c:486:24: warning: unused variable 'ffa' [-Wunused-variable]
   real        ff6,ff12,ffa,ffb,ffc,ffq,factor,dt,mu_ind;
                        ^~~
../../../src/kernel/do_gct.c:485:60: warning: unused variable 'rmsf' [-Wunused-variable]
   real        deviation[eoObsNR],prdev[eoObsNR],epot0,dist,rmsf;
                                                            ^~~~
At top level:
../../../src/kernel/do_gct.c:457:13: warning: 'dump_fm' defined but not used [-Wunused-function]
 static void dump_fm(FILE *fp,int n,real f[],char *s)
             ^~~~~~~
In file included from ../../../src/kernel/do_gct.c:50:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../include/pull.h:44,
                 from ../../../include/mdrun.h:56,
                 from ../../../src/kernel/do_gct.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../include/pull.h:44,
                 from ../../../include/mdrun.h:56,
                 from ../../../src/kernel/do_gct.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/xmdrun.h:50,
                 from ../../../src/kernel/do_gct.c:41:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o xutils.o ../../../src/kernel/xutils.c
../../../src/kernel/xutils.c: In function 'calc_mu_aver':
../../../src/kernel/xutils.c:65:19: warning: variable 'end' set but not used [-Wunused-but-set-variable]
   int     i,start,end;
                   ^~~
../../../src/kernel/xutils.c: In function 'update_forcefield':
../../../src/kernel/xutils.c:335:10: warning: unused variable 'bDone' [-Wunused-variable]
   bool   bDone;
          ^~~~~
In file included from ../../../src/kernel/xutils.c:45:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/xutils.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/xmdrun.h:50,
                 from ../../../src/kernel/xutils.c:44:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o genalg.o ../../../src/kernel/genalg.c
../../../src/kernel/genalg.c: In function 'update_ga':
../../../src/kernel/genalg.c:197:12: warning: unused variable 'j' [-Wunused-variable]
   int   i, j, L, n;      /* counting variables                 */
            ^
In file included from ../../../src/kernel/genalg.c:75:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/genalg.c:75:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o vsite_parm.lo ../../../src/kernel/vsite_parm.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/vsite_parm.c  -fPIC -DPIC -o .libs/vsite_parm.o
../../../src/kernel/vsite_parm.c: In function 'clean_vsite_bonds':
../../../src/kernel/vsite_parm.c:862:62: warning: unused variable 'vsitetype' [-Wunused-variable]
   int      ftype,i,j,parnr,k,l,m,n,nvsite,nOut,kept_i,vsnral,vsitetype;
                                                              ^~~~~~~~~
../../../src/kernel/vsite_parm.c:862:30: warning: unused variable 'l' [-Wunused-variable]
   int      ftype,i,j,parnr,k,l,m,n,nvsite,nOut,kept_i,vsnral,vsitetype;
                              ^
../../../src/kernel/vsite_parm.c:862:22: warning: unused variable 'parnr' [-Wunused-variable]
   int      ftype,i,j,parnr,k,l,m,n,nvsite,nOut,kept_i,vsnral,vsitetype;
                      ^~~~~
../../../src/kernel/vsite_parm.c: In function 'clean_vsite_angles':
../../../src/kernel/vsite_parm.c:1035:51: warning: unused variable 'vsitetype' [-Wunused-variable]
   int      i,j,parnr,k,l,m,n,nvsite,kept_i,vsnral,vsitetype;
                                                   ^~~~~~~~~
../../../src/kernel/vsite_parm.c:1035:24: warning: unused variable 'l' [-Wunused-variable]
   int      i,j,parnr,k,l,m,n,nvsite,kept_i,vsnral,vsitetype;
                        ^
../../../src/kernel/vsite_parm.c:1035:16: warning: unused variable 'parnr' [-Wunused-variable]
   int      i,j,parnr,k,l,m,n,nvsite,kept_i,vsnral,vsitetype;
                ^~~~~
../../../src/kernel/vsite_parm.c: In function 'clean_vsite_dihs':
../../../src/kernel/vsite_parm.c:1130:28: warning: unused variable 'l' [-Wunused-variable]
   int      ftype,i,parnr,k,l,m,n,nvsite,kept_i,vsnral;
                            ^
../../../src/kernel/vsite_parm.c:1130:20: warning: unused variable 'parnr' [-Wunused-variable]
   int      ftype,i,parnr,k,l,m,n,nvsite,kept_i,vsnral;
                    ^~~~~
../../../src/kernel/vsite_parm.c:1130:12: warning: unused variable 'ftype' [-Wunused-variable]
   int      ftype,i,parnr,k,l,m,n,nvsite,kept_i,vsnral;
            ^~~~~
In file included from ../../../src/kernel/vsite_parm.c:47:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/vsite_parm.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/resall.h:41,
                 from ../../../src/kernel/vsite_parm.c:45:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/kernel/vsite_parm.h:41,
                 from ../../../src/kernel/vsite_parm.c:43:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o readir.lo ../../../src/kernel/readir.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/readir.c  -fPIC -DPIC -o .libs/readir.o
../../../src/kernel/readir.c: In function 'do_index':
../../../src/kernel/readir.c:1427:38: warning: variable 'nbTS' set but not used [-Wunused-but-set-variable]
     nSAon,nSAoff,nSAsteps,nQMg,nbOPT,nbTS;
                                      ^~~~
../../../src/kernel/readir.c:1427:32: warning: variable 'nbOPT' set but not used [-Wunused-but-set-variable]
     nSAon,nSAoff,nSAsteps,nQMg,nbOPT,nbTS;
                                ^~~~~
../../../src/kernel/readir.c:1427:18: warning: variable 'nSAsteps' set but not used [-Wunused-but-set-variable]
     nSAon,nSAoff,nSAsteps,nQMg,nbOPT,nbTS;
                  ^~~~~~~~
../../../src/kernel/readir.c:1427:11: warning: variable 'nSAoff' set but not used [-Wunused-but-set-variable]
     nSAon,nSAoff,nSAsteps,nQMg,nbOPT,nbTS;
           ^~~~~~
../../../src/kernel/readir.c:1427:5: warning: variable 'nSAon' set but not used [-Wunused-but-set-variable]
     nSAon,nSAoff,nSAsteps,nQMg,nbOPT,nbTS;
     ^~~~~
../../../src/kernel/readir.c:1426:61: warning: variable 'nCASelec' set but not used [-Wunused-but-set-variable]
   int     nQMmethod,nQMbasis,nQMcharge,nQMmult,nbSH,nCASorb,nCASelec,
                                                             ^~~~~~~~
../../../src/kernel/readir.c:1426:53: warning: variable 'nCASorb' set but not used [-Wunused-but-set-variable]
   int     nQMmethod,nQMbasis,nQMcharge,nQMmult,nbSH,nCASorb,nCASelec,
                                                     ^~~~~~~
../../../src/kernel/readir.c:1426:48: warning: variable 'nbSH' set but not used [-Wunused-but-set-variable]
   int     nQMmethod,nQMbasis,nQMcharge,nQMmult,nbSH,nCASorb,nCASelec,
                                                ^~~~
../../../src/kernel/readir.c:1426:40: warning: variable 'nQMmult' set but not used [-Wunused-but-set-variable]
   int     nQMmethod,nQMbasis,nQMcharge,nQMmult,nbSH,nCASorb,nCASelec,
                                        ^~~~~~~
../../../src/kernel/readir.c:1426:30: warning: variable 'nQMcharge' set but not used [-Wunused-but-set-variable]
   int     nQMmethod,nQMbasis,nQMcharge,nQMmult,nbSH,nCASorb,nCASelec,
                              ^~~~~~~~~
../../../src/kernel/readir.c:1424:11: warning: unused variable 'SAtime' [-Wunused-variable]
   real    SAtime;
           ^~~~~~
../../../src/kernel/readir.c: In function 'triple_check':
../../../src/kernel/readir.c:1872:17: warning: unused variable 'npct' [-Wunused-variable]
   int  i,m,nmol,npct;
                 ^~~~
In file included from ../../../src/kernel/readir.c:58:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/readir.c:58:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/readir.h:43,
                 from ../../../src/kernel/readir.c:54:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/readir.c:53:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o protonate.o ../../../src/kernel/protonate.c
In file included from ../../../src/kernel/protonate.c:50:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/protonate.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/hackblock.h:42,
                 from ../../../src/kernel/genhydro.h:41,
                 from ../../../src/kernel/protonate.c:47:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/genhydro.h:40,
                 from ../../../src/kernel/protonate.c:47:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/protonate.c:45:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/protonate.c:43:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o luck.o ../../../src/kernel/luck.c
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/luck.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/luck.c:41:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o tpbconv.o ../../../src/kernel/tpbconv.c
../../../src/kernel/tpbconv.c: In function 'main':
../../../src/kernel/tpbconv.c:365:7: warning: unused variable 'nerror' [-Wunused-variable]
   int nerror = 0;
       ^~~~~~
../../../src/kernel/tpbconv.c:325:17: warning: unused variable 'gopts' [-Wunused-variable]
   t_gromppopts *gopts;
                 ^~~~~
../../../src/kernel/tpbconv.c:324:21: warning: unused variable 'irnew' [-Wunused-variable]
   t_inputrec   *ir,*irnew=NULL;
                     ^~~~~
../../../src/kernel/tpbconv.c:318:33: warning: unused variable 'nsteps_org' [-Wunused-variable]
   int          i,frame,run_step,nsteps_org;
                                 ^~~~~~~~~~
In file included from ../../../src/kernel/tpbconv.c:56:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/tpbconv.c:56:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/tpbconv.c:54:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/kernel/tpbconv.c:52:
../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable]
 static const char *couple_lam[ecouplamNR+1]    = {
                    ^~~~~~~~~~
../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable]
 static const char *constraints[eshNR+1]    = {
                    ^~~~~~~~~~~
In file included from ../../../src/kernel/readir.h:43,
                 from ../../../src/kernel/tpbconv.c:52:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/readir.h:42,
                 from ../../../src/kernel/tpbconv.c:52:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmxdump.o ../../../src/kernel/gmxdump.c
../../../src/kernel/gmxdump.c: In function 'list_tpx':
../../../src/kernel/gmxdump.c:146:16: warning: left-hand operand of comma expression has no effect [-Wunused-value]
       if (state,tpx.bF) {
                ^
../../../src/kernel/gmxdump.c:99:20: warning: unused variable 'fp' [-Wunused-variable]
   int         step,fp,indent,i,j,**gcount,atot;
                    ^~
../../../src/kernel/gmxdump.c: In function 'list_ene':
../../../src/kernel/gmxdump.c:314:17: warning: unused variable 'ndr' [-Wunused-variable]
   int        in,ndr;
                 ^~~
At top level:
../../../src/kernel/gmxdump.c:65:13: warning: 'dump_top' defined but not used [-Wunused-function]
 static void dump_top(FILE *fp,t_topology *top,char *tpr)
             ^~~~~~~~
In file included from ../../../src/kernel/gmxdump.c:47:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/gmxdump.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o md.o ../../../src/kernel/md.c
../../../src/kernel/md.c: In function 'mdrunner':
../../../src/kernel/md.c:140:15: warning: unused variable 'gro' [-Wunused-variable]
   char       *gro;
               ^~~
../../../src/kernel/md.c:139:45: warning: unused variable 'nalloc' [-Wunused-variable]
   int        i,m,nChargePerturbed=-1,status,nalloc;
                                             ^~~~~~
../../../src/kernel/md.c:139:16: warning: unused variable 'm' [-Wunused-variable]
   int        i,m,nChargePerturbed=-1,status,nalloc;
                ^
../../../src/kernel/md.c:139:14: warning: unused variable 'i' [-Wunused-variable]
   int        i,m,nChargePerturbed=-1,status,nalloc;
              ^
../../../src/kernel/md.c:128:20: warning: unused variable 'tmpr2' [-Wunused-variable]
   real       tmpr1,tmpr2;
                    ^~~~~
../../../src/kernel/md.c:128:14: warning: unused variable 'tmpr1' [-Wunused-variable]
   real       tmpr1,tmpr2;
              ^~~~~
../../../src/kernel/md.c: In function 'do_md':
../../../src/kernel/md.c:533:16: warning: unused variable 'grpname' [-Wunused-variable]
   char        *grpname;
                ^~~~~~~
../../../src/kernel/md.c:525:15: warning: unused variable 'timestep' [-Wunused-variable]
   real        timestep=0;
               ^~~~~~~~
In file included from ../../../include/pppm.h:46,
                 from ../../../src/kernel/md.c:69:
At top level:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/md.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/md.c:45:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/md.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o libgmxpreprocess_d.la  add_par.lo compute_io.lo convparm.lo gen_ad.lo gen_vsite.lo genhydro.lo gmxcpp.lo gpp_atomtype.lo gpp_bond_atomtype.lo h_db.lo hackblock.lo hizzie.lo pdb2top.lo pgutil.lo readir.lo readpull.lo resall.lo sorting.lo specbond.lo ter_db.lo tomorse.lo topdirs.lo topexcl.lo topio.lo toppush.lo topshake.lo toputil.lo tpbcmp.lo vsite_parm.lo xlate.lo  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
ar cru .libs/libgmxpreprocess_d.a .libs/add_par.o .libs/compute_io.o .libs/convparm.o .libs/gen_ad.o .libs/gen_vsite.o .libs/genhydro.o .libs/gmxcpp.o .libs/gpp_atomtype.o .libs/gpp_bond_atomtype.o .libs/h_db.o .libs/hackblock.o .libs/hizzie.o .libs/pdb2top.o .libs/pgutil.o .libs/readir.o .libs/readpull.o .libs/resall.o .libs/sorting.o .libs/specbond.o .libs/ter_db.o .libs/tomorse.o .libs/topdirs.o .libs/topexcl.o .libs/topio.o .libs/toppush.o .libs/topshake.o .libs/toputil.o .libs/tpbcmp.o .libs/vsite_parm.o .libs/xlate.o
ranlib .libs/libgmxpreprocess_d.a
creating libgmxpreprocess_d.la
(cd .libs && rm -f libgmxpreprocess_d.la && ln -s ../libgmxpreprocess_d.la libgmxpreprocess_d.la)
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o grompp grompp.o libgmxpreprocess_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -o .libs/grompp grompp.o  ./.libs/libgmxpreprocess_d.a -lgslcblas -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath 
creating grompp
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o tpbconv tpbconv.o libgmxpreprocess_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -o .libs/tpbconv tpbconv.o  ./.libs/libgmxpreprocess_d.a -lgslcblas -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath 
creating tpbconv
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o mdrun glaasje.o gctio.o ionize.o do_gct.o repl_ex.o xutils.o md.o mdrun.o genalg.o libgmxpreprocess_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -o .libs/mdrun glaasje.o gctio.o ionize.o do_gct.o repl_ex.o xutils.o md.o mdrun.o genalg.o  ./.libs/libgmxpreprocess_d.a -lgslcblas -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath 
creating mdrun
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o protonate protonate.o libgmxpreprocess_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -o .libs/protonate protonate.o  ./.libs/libgmxpreprocess_d.a -lgslcblas -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath 
creating protonate
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nm2type.o ../../../src/kernel/nm2type.c
../../../src/kernel/nm2type.c: In function 'rd_nm2type':
../../../src/kernel/nm2type.c:72:20: warning: unused variable 'blen' [-Wunused-variable]
   double    qq,mm,*blen;
                    ^~~~
../../../src/kernel/nm2type.c: In function 'nm2type':
../../../src/kernel/nm2type.c:160:38: warning: unused variable 'quality' [-Wunused-variable]
   int *bbb,*n_mask,*m_mask,**match,**quality;
                                      ^~~~~~~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/pdb2top.h:43,
                 from ../../../src/kernel/nm2type.c:59:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/kernel/toputil.h:40,
                 from ../../../src/kernel/toppush.h:41,
                 from ../../../src/kernel/nm2type.c:58:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/nm2type.c:52:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/nm2type.c:51:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/nm2type.c:44:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/kernel/nm2type.c:42:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o luck luck.o libgmxpreprocess_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -o .libs/luck luck.o  ./.libs/libgmxpreprocess_d.a -lgslcblas -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath 
creating luck
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o gmxdump gmxdump.o libgmxpreprocess_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -o .libs/gmxdump gmxdump.o  ./.libs/libgmxpreprocess_d.a -lgslcblas -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath 
creating gmxdump
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o x2top.o ../../../src/kernel/x2top.c
../../../src/kernel/x2top.c: In function 'set_cgnr':
../../../src/kernel/x2top.c:178:15: warning: unused variable 'mt' [-Wunused-variable]
   double qt=0,mt=0;
               ^~
../../../src/kernel/x2top.c: In function 'set_force_const':
../../../src/kernel/x2top.c:255:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/kernel/x2top.c: In function 'main':
../../../src/kernel/x2top.c:419:15: warning: unused variable 'scale' [-Wunused-variable]
   static real scale = 1.1, kb = 4e5,kt = 400,kp = 5;
               ^~~~~
../../../src/kernel/x2top.c:411:14: warning: unused variable 'cutoff' [-Wunused-variable]
   real       cutoff,qtot,mtot;
              ^~~~~~
../../../src/kernel/x2top.c:408:24: warning: unused variable 'ndih' [-Wunused-variable]
   int        i,j,k,l,m,ndih;
                        ^~~~
../../../src/kernel/x2top.c:408:22: warning: unused variable 'm' [-Wunused-variable]
   int        i,j,k,l,m,ndih;
                      ^
../../../src/kernel/x2top.c:408:20: warning: unused variable 'l' [-Wunused-variable]
   int        i,j,k,l,m,ndih;
                    ^
../../../src/kernel/x2top.c:408:18: warning: unused variable 'k' [-Wunused-variable]
   int        i,j,k,l,m,ndih;
                  ^
../../../src/kernel/x2top.c:408:16: warning: unused variable 'j' [-Wunused-variable]
   int        i,j,k,l,m,ndih;
                ^
../../../src/kernel/x2top.c:408:14: warning: unused variable 'i' [-Wunused-variable]
   int        i,j,k,l,m,ndih;
              ^
../../../src/kernel/x2top.c:407:14: warning: unused variable 'nres' [-Wunused-variable]
   int        nres;         /* number of molecules? */
              ^~~~
At top level:
../../../src/kernel/x2top.c:419:15: warning: 'scale' defined but not used [-Wunused-variable]
   static real scale = 1.1, kb = 4e5,kt = 400,kp = 5;
               ^~~~~
../../../src/kernel/x2top.c:117:12: warning: 'get_atype' defined but not used [-Wunused-function]
 static int get_atype(char *nm)
            ^~~~~~~~~
../../../src/kernel/x2top.c:80:13: warning: 'set_x_blen' defined but not used [-Wunused-function]
 static real set_x_blen(real scale)
             ^~~~~~~~~~
In file included from ../../../src/kernel/topio.h:41,
                 from ../../../src/kernel/gen_ad.h:42,
                 from ../../../src/kernel/x2top.c:60:
../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable]
 static const char *couple_lam[ecouplamNR+1]    = {
                    ^~~~~~~~~~
../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable]
 static const char *constraints[eshNR+1]    = {
                    ^~~~~~~~~~~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/pdb2top.h:43,
                 from ../../../src/kernel/x2top.c:59:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/kernel/toputil.h:40,
                 from ../../../src/kernel/toppush.h:41,
                 from ../../../src/kernel/x2top.c:58:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/x2top.c:52:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/x2top.c:51:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/x2top.c:42:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/kernel/x2top.c:40:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmxcheck.o ../../../src/kernel/gmxcheck.c
../../../src/kernel/gmxcheck.c: In function 'tpx2system':
../../../src/kernel/gmxcheck.c:90:7: warning: unused variable 'i' [-Wunused-variable]
   int i,nmol,nvsite=0;
       ^
../../../src/kernel/gmxcheck.c: In function 'tpx2methods':
../../../src/kernel/gmxcheck.c:140:15: warning: unused variable 'i' [-Wunused-variable]
   int         i,step;
               ^
../../../src/kernel/gmxcheck.c:136:15: warning: unused variable 'sh' [-Wunused-variable]
   t_tpxheader sh;
               ^~
../../../src/kernel/gmxcheck.c: In function 'chk_bonds':
../../../src/kernel/gmxcheck.c:202:26: warning: variable 'devtot' set but not used [-Wunused-but-set-variable]
   real b0,blen,deviation,devtot;
                          ^~~~~~
../../../src/kernel/gmxcheck.c:201:14: warning: unused variable 'i' [-Wunused-variable]
   int  ftype,i,k,ai,aj,type;
              ^
../../../src/kernel/gmxcheck.c: In function 'chk_trj':
../../../src/kernel/gmxcheck.c:252:35: warning: unused variable 'bOK' [-Wunused-variable]
   bool         bShowTimestep=TRUE,bOK,newline=FALSE;
                                   ^~~
../../../src/kernel/gmxcheck.c:251:40: warning: unused variable 'prec' [-Wunused-variable]
   real         rdum,t,tt,old_t1,old_t2,prec;
                                        ^~~~
../../../src/kernel/gmxcheck.c:251:23: warning: unused variable 'tt' [-Wunused-variable]
   real         rdum,t,tt,old_t1,old_t2,prec;
                       ^~
../../../src/kernel/gmxcheck.c:251:16: warning: unused variable 'rdum' [-Wunused-variable]
   real         rdum,t,tt,old_t1,old_t2,prec;
                ^~~~
../../../src/kernel/gmxcheck.c:250:16: warning: variable 'fpos' set but not used [-Wunused-but-set-variable]
   off_t        fpos;
                ^~~~
../../../src/kernel/gmxcheck.c: In function 'chk_ndx':
../../../src/kernel/gmxcheck.c:526:10: warning: unused variable 'j' [-Wunused-variable]
   int  i,j;
          ^
../../../src/kernel/gmxcheck.c: In function 'chk_enx':
../../../src/kernel/gmxcheck.c:550:25: warning: unused variable 'ndr' [-Wunused-variable]
   int        in,nre,fnr,ndr;
                         ^~~
In file included from ../../../src/kernel/gmxcheck.c:57:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/gmxcheck.c:57:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/gmxcheck.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/gmxcheck.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o x2top x2top.o nm2type.o libgmxpreprocess_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -o .libs/x2top x2top.o nm2type.o  ./.libs/libgmxpreprocess_d.a -lgslcblas -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath 
creating x2top
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o gmxcheck gmxcheck.o libgmxpreprocess_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -o .libs/gmxcheck gmxcheck.o  ./.libs/libgmxpreprocess_d.a -lgslcblas -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath 
creating gmxcheck
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o pdb2gmx.o ../../../src/kernel/pdb2gmx.c
../../../src/kernel/pdb2gmx.c:149:20: warning: 'get_cystp' defined but not used [-Wunused-function]
 static const char *get_cystp(int resnr)
                    ^~~~~~~~~
In file included from ../../../src/kernel/toputil.h:40,
                 from ../../../src/kernel/pdb2gmx.c:55:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/pdb2gmx.c:54:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/pdb2gmx.c:51:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/pdb2gmx.c:50:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/pdb2gmx.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/pdb2gmx.c:46:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
../../../src/kernel/pdb2gmx.c: In function 'main':
../../../src/kernel/pdb2gmx.c:783:18: warning: '.rtp' directive writing 4 bytes into a region of size between 1 and 4096 [-Wformat-overflow=]
   sprintf(rtp,"%s.rtp",forcefield);
                  ^~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/kernel/pdb2gmx.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 5 and 4100 bytes into a destination of size 4096
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/kernel/pdb2gmx.c:1162:31: warning: '%s' directive writing up to 4095 bytes into a region of size 4089 [-Wformat-overflow=]
       sprintf(molname,"Protein%s",suffix);
                               ^~  ~~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/kernel/pdb2gmx.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 8 and 4103 bytes into a destination of size 4096
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/kernel/pdb2gmx.c:1176:22: warning: '_pr.itp' directive writing 7 bytes into a region of size between 1 and 4096 [-Wformat-overflow=]
  sprintf(posre_fn,"%s_pr.itp",buf_fn);
                      ^~~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/kernel/pdb2gmx.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 8 and 4103 bytes into a destination of size 4096
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o pdb2gmx pdb2gmx.o libgmxpreprocess_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -o .libs/pdb2gmx pdb2gmx.o  ./.libs/libgmxpreprocess_d.a -lgslcblas -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath 
creating pdb2gmx
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
Making all in tools
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o polynomials.lo ../../../src/tools/polynomials.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/polynomials.c  -fPIC -DPIC -o .libs/polynomials.o
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/polynomials.c:44:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o eigio.lo ../../../src/tools/eigio.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/eigio.c  -fPIC -DPIC -o .libs/eigio.o
In file included from ../../../src/tools/eigio.c:41:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/eigio.c:41:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o autocorr.lo ../../../src/tools/autocorr.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/autocorr.c  -fPIC -DPIC -o .libs/autocorr.o
In file included from ../../../include/gmx_fft.h:41,
                 from ../../../src/tools/correl.h:40,
                 from ../../../src/tools/autocorr.c:53:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/tools/autocorr.c:51:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/autocorr.c:51:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/autocorr.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o anadih.lo ../../../src/tools/anadih.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/anadih.c  -fPIC -DPIC -o .libs/anadih.o
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/anadih.c:51:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/anadih.c:50:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/anadih.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o cmat.lo ../../../src/tools/cmat.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/cmat.c  -fPIC -DPIC -o .libs/cmat.o
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o pp2shift.lo ../../../src/tools/pp2shift.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/pp2shift.c  -fPIC -DPIC -o .libs/pp2shift.o
In file included from ../../../src/tools/pp2shift.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/pp2shift.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o lsq.lo ../../../src/tools/lsq.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/lsq.c  -fPIC -DPIC -o .libs/lsq.o
In file included from ../../../src/tools/lsq.c:42:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/lsq.c:42:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/lsq.c:41:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o hxprops.lo ../../../src/tools/hxprops.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/hxprops.c  -fPIC -DPIC -o .libs/hxprops.o
../../../src/tools/hxprops.c: In function 'ellipticity':
../../../src/tools/hxprops.c:85:14: warning: unused variable 'Xi' [-Wunused-variable]
   const real Xi=1.0;
              ^~
In file included from ../../../src/tools/hxprops.c:46:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/hxprops.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o do_dssp.o ../../../src/tools/do_dssp.c
../../../src/tools/do_dssp.c: In function 'main':
../../../src/tools/do_dssp.c:347:16: warning: unused variable 'j' [-Wunused-variable]
   int        i,j,natoms,nframe=0;
                ^
In file included from ../../../src/tools/do_dssp.c:49:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/tools/do_dssp.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/do_dssp.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o eigensolver.lo ../../../src/tools/eigensolver.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/eigensolver.c  -fPIC -DPIC -o .libs/eigensolver.o
../../../src/tools/eigensolver.c: In function 'eigensolver':
../../../src/tools/eigensolver.c:65:16: warning: unused variable 'iu' [-Wunused-variable]
     int     il,iu,m,iw0,info;
                ^~
../../../src/tools/eigensolver.c:65:13: warning: unused variable 'il' [-Wunused-variable]
     int     il,iu,m,iw0,info;
             ^~
../../../src/tools/eigensolver.c: In function 'sparse_eigensolver':
../../../src/tools/eigensolver.c:296:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
     for(i=0;i<11;i++)
     ^~~
../../../src/tools/eigensolver.c:299:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
  iparam[0] = 1;       /* Don't use explicit shifts */
  ^~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dlist.lo ../../../src/tools/dlist.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/dlist.c  -fPIC -DPIC -o .libs/dlist.o
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/dlist.c:44:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nsc.lo ../../../src/tools/nsc.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/nsc.c  -fPIC -DPIC -o .libs/nsc.o
../../../src/tools/nsc.c: In function 'make_unsp':
../../../src/tools/nsc.c:446:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
   if (xpunsp) free(xpunsp); if (ico_wk) free(ico_wk);
   ^~
../../../src/tools/nsc.c:446:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
   if (xpunsp) free(xpunsp); if (ico_wk) free(ico_wk);
                             ^~
../../../src/tools/nsc.c: In function 'nsc_dclm_pbc':
../../../src/tools/nsc.c:652:21: warning: unused variable 'm' [-Wunused-variable]
     int    ix,iy,iz,m;
                     ^
../../../src/tools/nsc.c:551:16: warning: unused variable 'jat_xx' [-Wunused-variable]
   int   iat_xx,jat_xx;
                ^~~~~~
In file included from ../../../src/tools/nsc.c:48:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/nsc.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o fitahx.lo ../../../src/tools/fitahx.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/fitahx.c  -fPIC -DPIC -o .libs/fitahx.o
In file included from ../../../src/tools/fitahx.c:41:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/fitahx.c:41:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_bond.lo ../../../src/tools/gmx_bond.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_bond.c  -fPIC -DPIC -o .libs/gmx_bond.o
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_bond.c:51:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_bond.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_bond.c:45:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_bond.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_angle.lo ../../../src/tools/gmx_angle.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_angle.c  -fPIC -DPIC -o .libs/gmx_angle.o
../../../src/tools/gmx_angle.c: In function 'gmx_angle':
../../../src/tools/gmx_angle.c:147:14: warning: unused variable 'buf' [-Wunused-variable]
   char       buf[80];
              ^~~
../../../src/tools/gmx_angle.c:143:38: warning: unused variable 'fraction' [-Wunused-variable]
   real       t,aa,aver,aver2,aversig,fraction;       /* fraction trans dihedrals */
                                      ^~~~~~~~
../../../src/tools/gmx_angle.c:143:16: warning: unused variable 'aa' [-Wunused-variable]
   real       t,aa,aver,aver2,aversig,fraction;       /* fraction trans dihedrals */
                ^~
../../../src/tools/gmx_angle.c:143:14: warning: unused variable 't' [-Wunused-variable]
   real       t,aa,aver,aver2,aversig,fraction;       /* fraction trans dihedrals */
              ^
../../../src/tools/gmx_angle.c:138:55: warning: unused variable 'angind' [-Wunused-variable]
   int        i,j,total,nangles,natoms,nat2,first,last,angind;
                                                       ^~~~~~
../../../src/tools/gmx_angle.c:138:39: warning: unused variable 'nat2' [-Wunused-variable]
   int        i,j,total,nangles,natoms,nat2,first,last,angind;
                                       ^~~~
../../../src/tools/gmx_angle.c:138:32: warning: unused variable 'natoms' [-Wunused-variable]
   int        i,j,total,nangles,natoms,nat2,first,last,angind;
                                ^~~~~~
../../../src/tools/gmx_angle.c:138:18: warning: unused variable 'total' [-Wunused-variable]
   int        i,j,total,nangles,natoms,nat2,first,last,angind;
                  ^~~~~
../../../src/tools/gmx_angle.c:135:21: warning: unused variable 'Jc' [-Wunused-variable]
   real       maxang,Jc,S2,norm_fac,maxstat;
                     ^~
../../../src/tools/gmx_angle.c:132:14: warning: unused variable 'status' [-Wunused-variable]
   int        status,isize;
              ^~~~~~
../../../src/tools/gmx_angle.c:131:14: warning: unused variable 'tmp' [-Wunused-variable]
   real       tmp,dt;
              ^~~
In file included from ../../../src/tools/gmx_angle.c:49:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_angle.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_angle.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_angle.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o expfit.lo ../../../src/tools/expfit.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/expfit.c  -fPIC -DPIC -o .libs/expfit.o
In file included from ../../../src/tools/expfit.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/expfit.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/expfit.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o levenmar.lo ../../../src/tools/levenmar.c
mkdir .libs
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/levenmar.c  -fPIC -DPIC -o .libs/levenmar.o
../../../src/tools/levenmar.c:224:13: warning: 'free_convert_matrix' defined but not used [-Wunused-function]
 static void free_convert_matrix(real **b, int nrl)
             ^~~~~~~~~~~~~~~~~~~
../../../src/tools/levenmar.c:208:15: warning: 'convert_matrix' defined but not used [-Wunused-function]
 static real **convert_matrix(real *a, int nrl, int nrh, int ncl, int nch)
               ^~~~~~~~~~~~~~
../../../src/tools/levenmar.c:201:13: warning: 'free_submatrix' defined but not used [-Wunused-function]
 static void free_submatrix(real **b, int nrl)
             ^~~~~~~~~~~~~~
../../../src/tools/levenmar.c:191:13: warning: 'free_imatrix' defined but not used [-Wunused-function]
 static void free_imatrix(int **m, int nrl, int nrh, int ncl)
             ^~~~~~~~~~~~
../../../src/tools/levenmar.c:183:13: warning: 'free_dmatrix' defined but not used [-Wunused-function]
 static void free_dmatrix(double **m, int nrl, int nrh, int ncl)
             ^~~~~~~~~~~~
../../../src/tools/levenmar.c:168:13: warning: 'free_dvector' defined but not used [-Wunused-function]
 static void free_dvector(int *v, int nl)
             ^~~~~~~~~~~~
../../../src/tools/levenmar.c:141:15: warning: 'submatrix' defined but not used [-Wunused-function]
 static real **submatrix(real **a, int oldrl, int oldrh, int oldcl,
               ^~~~~~~~~
../../../src/tools/levenmar.c:123:14: warning: 'imatrix1' defined but not used [-Wunused-function]
 static int **imatrix1(int nrl, int nrh, int ncl, int nch)
              ^~~~~~~~
../../../src/tools/levenmar.c:106:17: warning: 'dmatrix' defined but not used [-Wunused-function]
 static double **dmatrix(int nrl, int nrh, int ncl, int nch)
                 ^~~~~~~
../../../src/tools/levenmar.c:78:16: warning: 'dvector' defined but not used [-Wunused-function]
 static double *dvector(int nl, int nh)
                ^~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_analyze.lo ../../../src/tools/gmx_analyze.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_analyze.c  -fPIC -DPIC -o .libs/gmx_analyze.o
../../../src/tools/gmx_analyze.c: In function 'luzar_correl':
../../../src/tools/gmx_analyze.c:514:8: warning: unused variable 'weight' [-Wunused-variable]
   real weight,d2;
        ^~~~~~
../../../src/tools/gmx_analyze.c:512:14: warning: unused variable 'tol' [-Wunused-variable]
   const real tol = 1e-8;
              ^~~
../../../src/tools/gmx_analyze.c: In function 'gmx_analyze':
../../../src/tools/gmx_analyze.c:744:63: warning: unused variable 'bLuzarError' [-Wunused-variable]
   static bool bIntegrate=FALSE,bRegression=FALSE,bLuzar=FALSE,bLuzarError=FALSE;
                                                               ^~~~~~~~~~~
At top level:
../../../src/tools/gmx_analyze.c:744:63: warning: 'bLuzarError' defined but not used [-Wunused-variable]
../../../src/tools/gmx_analyze.c:273:13: warning: 'anal_ee' defined but not used [-Wunused-function]
 static real anal_ee(real *parm,real T,real t)
             ^~~~~~~
In file included from ../../../src/tools/gmx_analyze.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_analyze.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_analyze.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_analyze.c:41:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_bundle.lo ../../../src/tools/gmx_bundle.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_bundle.c  -fPIC -DPIC -o .libs/gmx_bundle.o
../../../src/tools/gmx_bundle.c: In function 'dump_axes':
../../../src/tools/gmx_bundle.c:141:17: warning: unused variable 'end' [-Wunused-variable]
   int         i,end;
                 ^~~
../../../src/tools/gmx_bundle.c: In function 'gmx_bundle':
../../../src/tools/gmx_bundle.c:210:16: warning: unused variable 'j' [-Wunused-variable]
   int        i,j,gnx[MAX_ENDS];
                ^
../../../src/tools/gmx_bundle.c:208:14: warning: unused variable 'natoms' [-Wunused-variable]
   int        natoms;
              ^~~~~~
../../../src/tools/gmx_bundle.c:198:15: warning: unused variable 'out' [-Wunused-variable]
   FILE       *out,*flen,*fdist,*fz,*ftilt,*ftiltr,*ftiltl;
               ^~~
In file included from ../../../src/tools/gmx_bundle.c:48:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_bundle.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_bundle.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_bundle.c:42:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_chi.lo ../../../src/tools/gmx_chi.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_chi.c  -fPIC -DPIC -o .libs/gmx_chi.o
../../../src/tools/gmx_chi.c: In function 'histogramming':
../../../src/tools/gmx_chi.c:418:23: warning: unused variable 'his_aa1' [-Wunused-variable]
   int     ***his_aa,**his_aa1,*histmp;
                       ^~~~~~~
../../../src/tools/gmx_chi.c: In function 'print_transitions':
../../../src/tools/gmx_chi.c:834:8: warning: variable 'nh' set but not used [-Wunused-but-set-variable]
   int  nh[edMax];
        ^~
../../../src/tools/gmx_chi.c: In function 'gmx_chi':
../../../src/tools/gmx_chi.c:1098:16: warning: unused variable 'j' [-Wunused-variable]
   int        i,j,**chi_lookup,*xity;
                ^
In file included from ../../../src/tools/gmx_chi.c:59:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/tools/gmx_chi.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/gmx_chi.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_chi.c:44:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_chi.c:43:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../src/tools/gmx_chi.c: In function 'histogramming.isra.1':
../../../src/tools/gmx_chi.c:657:30: warning: '.xvg' directive writing 4 bytes into a region of size between 0 and 255 [-Wformat-overflow=]
      sprintf(sshisfile,"%s-%s.xvg",hisfile,sss[k]);
                              ^~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../src/tools/gmx_chi.c:39:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 6 or more bytes (assuming 261) into a destination of size 256
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_covar.lo ../../../src/tools/gmx_covar.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_covar.c  -fPIC -DPIC -o .libs/gmx_covar.o
../../../src/tools/gmx_covar.c: In function 'gmx_covar':
../../../src/tools/gmx_covar.c:120:30: warning: unused variable 'count' [-Wunused-variable]
   int        natoms,nat,ndim,count,nframes0,nframes,nlevels;
                              ^~~~~
../../../src/tools/gmx_covar.c:119:24: warning: unused variable 'step' [-Wunused-variable]
   int        ntopatoms,step;
                        ^~~~
../../../src/tools/gmx_covar.c:119:14: warning: unused variable 'ntopatoms' [-Wunused-variable]
   int        ntopatoms,step;
              ^~~~~~~~~
../../../src/tools/gmx_covar.c:109:21: warning: unused variable 'trjout' [-Wunused-variable]
   int        status,trjout;
                     ^~~~~~
In file included from ../../../src/tools/gmx_covar.c:50:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_covar.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_covar.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_covar.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_confrms.lo ../../../src/tools/gmx_confrms.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_confrms.c  -fPIC -DPIC -o .libs/gmx_confrms.o
../../../src/tools/gmx_confrms.c: In function 'find_matching_names':
../../../src/tools/gmx_confrms.c:252:35: warning: unused variable 'atnm2' [-Wunused-variable]
   char *resnm1, *resnm2, *atnm1, *atnm2;
                                   ^~~~~
../../../src/tools/gmx_confrms.c:252:27: warning: unused variable 'atnm1' [-Wunused-variable]
   char *resnm1, *resnm2, *atnm1, *atnm2;
                           ^~~~~
../../../src/tools/gmx_confrms.c:252:18: warning: unused variable 'resnm2' [-Wunused-variable]
   char *resnm1, *resnm2, *atnm1, *atnm2;
                  ^~~~~~
../../../src/tools/gmx_confrms.c:252:9: warning: unused variable 'resnm1' [-Wunused-variable]
   char *resnm1, *resnm2, *atnm1, *atnm2;
         ^~~~~~
../../../src/tools/gmx_confrms.c:249:7: warning: unused variable 'r' [-Wunused-variable]
   int r,rnr1, rnr2, prnr1, prnr2;
       ^
../../../src/tools/gmx_confrms.c:247:7: warning: unused variable 'i' [-Wunused-variable]
   int i, i1, i2, ii1, ii2, m1, m2;
       ^
../../../src/tools/gmx_confrms.c: In function 'gmx_confrms':
../../../src/tools/gmx_confrms.c:407:17: warning: unused variable 'tmas2' [-Wunused-variable]
   real    tmas1,tmas2;
                 ^~~~~
../../../src/tools/gmx_confrms.c:407:11: warning: unused variable 'tmas1' [-Wunused-variable]
   real    tmas1,tmas2;
           ^~~~~
../../../src/tools/gmx_confrms.c:404:13: warning: unused variable 'j' [-Wunused-variable]
   int     i,j,m;
             ^
In file included from ../../../src/tools/gmx_confrms.c:56:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/tools/gmx_confrms.c:50:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_confrms.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_confrms.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_confrms.c:46:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_dielectric.lo ../../../src/tools/gmx_dielectric.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_dielectric.c  -fPIC -DPIC -o .libs/gmx_dielectric.o
../../../src/tools/gmx_dielectric.c: In function 'calc_nbegin':
../../../src/tools/gmx_dielectric.c:60:11: warning: unused variable 'dtt' [-Wunused-variable]
   real dt,dtt;
           ^~~
../../../src/tools/gmx_dielectric.c:60:8: warning: unused variable 'dt' [-Wunused-variable]
   real dt,dtt;
        ^~
In file included from ../../../src/tools/gmx_dielectric.c:53:
At top level:
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/tools/gmx_dielectric.c:51:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/gmx_dielectric.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_dielectric.c:44:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_density.lo ../../../src/tools/gmx_density.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_density.c  -fPIC -DPIC -o .libs/gmx_density.o
../../../src/tools/gmx_density.c: In function 'calc_density':
../../../src/tools/gmx_density.c:261:9: warning: unused variable 'buf' [-Wunused-variable]
   char *buf;             /* for tmp. keeping atomname */
         ^~~
../../../src/tools/gmx_density.c:254:9: warning: unused variable 'j' [-Wunused-variable]
       i,j,n,               /* loop indices */
         ^
../../../src/tools/gmx_density.c:253:9: warning: unused variable 'slCount' [-Wunused-variable]
       **slCount,         /* nr. of atoms in one slice for a group */
         ^~~~~~~
In file included from ../../../src/tools/gmx_density.c:52:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_density.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_density.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/gmx_density.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_densmap.lo ../../../src/tools/gmx_densmap.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_densmap.c  -fPIC -DPIC -o .libs/gmx_densmap.o
In file included from ../../../src/tools/gmx_densmap.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_densmap.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_densmap.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_densmap.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_dih.lo ../../../src/tools/gmx_dih.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_dih.c  -fPIC -DPIC -o .libs/gmx_dih.o
../../../src/tools/gmx_dih.c:55:13: warning: 'dump_dih' defined but not used [-Wunused-function]
 static void dump_dih(int nframes,char *title,real time[],real dih[])
             ^~~~~~~~
In file included from ../../../src/tools/gmx_dih.c:51:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_dih.c:51:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_dih.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_dih.c:43:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
../../../src/tools/gmx_dih.c: In function 'gmx_dih':
../../../src/tools/gmx_dih.c:265:22: warning: '%d' directive writing between 1 and 10 bytes into a region of size 6 [-Wformat-overflow=]
     sprintf(buf,"dih-%d",i);
                      ^~
../../../src/tools/gmx_dih.c:265:17: note: directive argument in the range [0, 1073741823]
     sprintf(buf,"dih-%d",i);
                 ^~~~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/tools/gmx_dih.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 6 and 15 bytes into a destination of size 10
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_current.lo ../../../src/tools/gmx_current.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_current.c  -fPIC -DPIC -o .libs/gmx_current.o
../../../src/tools/gmx_current.c: In function 'calc_mjdsp':
../../../src/tools/gmx_current.c:266:7: warning: unused variable 'rfr' [-Wunused-variable]
  real rfr;
       ^~~
../../../src/tools/gmx_current.c:265:8: warning: unused variable 'rtmp' [-Wunused-variable]
  real  rtmp;
        ^~~~
../../../src/tools/gmx_current.c: In function 'dielectric':
../../../src/tools/gmx_current.c:338:8: warning: variable 'rest' set but not used [-Wunused-but-set-variable]
   real rest=0.0;
        ^~~~
../../../src/tools/gmx_current.c:326:8: warning: unused variable 'qtmp' [-Wunused-variable]
   real qtmp;
        ^~~~
../../../src/tools/gmx_current.c:308:13: warning: unused variable 'dm_d' [-Wunused-variable]
   real dm_s,dm_d;
             ^~~~
../../../src/tools/gmx_current.c:308:8: warning: unused variable 'dm_s' [-Wunused-variable]
   real dm_s,dm_d;
        ^~~~
../../../src/tools/gmx_current.c:298:8: warning: unused variable 'rfr' [-Wunused-variable]
   real rfr=0.0;
        ^~~
../../../src/tools/gmx_current.c:293:33: warning: variable 'itrust' set but not used [-Wunused-but-set-variable]
   int  valloc,nalloc,nfr,nvfr,m,itrust=0;
                                 ^~~~~~
../../../src/tools/gmx_current.c:293:31: warning: unused variable 'm' [-Wunused-variable]
   int  valloc,nalloc,nfr,nvfr,m,itrust=0;
                               ^
../../../src/tools/gmx_current.c:292:17: warning: unused variable 'f' [-Wunused-variable]
   int   i,j,k,l,f;
                 ^
../../../src/tools/gmx_current.c:292:15: warning: unused variable 'l' [-Wunused-variable]
   int   i,j,k,l,f;
               ^
../../../src/tools/gmx_current.c:292:13: warning: unused variable 'k' [-Wunused-variable]
   int   i,j,k,l,f;
             ^
../../../src/tools/gmx_current.c: In function 'gmx_current':
../../../src/tools/gmx_current.c:720:15: warning: unused variable 'tfile' [-Wunused-variable]
   FILE       *tfile=NULL;
               ^~~~~
../../../src/tools/gmx_current.c:719:15: warning: unused variable 'outi' [-Wunused-variable]
   FILE       *outi=NULL;
               ^~~~
../../../src/tools/gmx_current.c:716:14: warning: unused variable 'lambda' [-Wunused-variable]
   real       lambda;
              ^~~~~~
../../../src/tools/gmx_current.c:715:13: warning: unused variable 't' [-Wunused-variable]
   real      t;
             ^
../../../src/tools/gmx_current.c:714:14: warning: unused variable 'step' [-Wunused-variable]
   int        step;
              ^~~~
../../../src/tools/gmx_current.c:713:21: warning: unused variable 'l' [-Wunused-variable]
   int       i,j,k=0,l;
                     ^
../../../src/tools/gmx_current.c:713:17: warning: unused variable 'k' [-Wunused-variable]
   int       i,j,k=0,l;
                 ^
../../../src/tools/gmx_current.c:713:15: warning: unused variable 'j' [-Wunused-variable]
   int       i,j,k=0,l;
               ^
../../../src/tools/gmx_current.c:711:12: warning: unused variable 'natoms' [-Wunused-variable]
   int      natoms;
            ^~~~~~
../../../src/tools/gmx_current.c:707:10: warning: variable 'bNEU' set but not used [-Wunused-but-set-variable]
   bool   bNEU;
          ^~~~
../../../src/tools/gmx_current.c:706:13: warning: variable 'bTop' set but not used [-Wunused-but-set-variable]
   bool      bTop;
             ^~~~
In file included from ../../../src/tools/gmx_current.c:44:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_current.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_current.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_current.c:40:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_anaeig.lo ../../../src/tools/gmx_anaeig.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_anaeig.c  -fPIC -DPIC -o .libs/gmx_anaeig.o
../../../src/tools/gmx_anaeig.c: In function 'calc_entropy_schlitter':
../../../src/tools/gmx_anaeig.c:98:10: warning: unused variable 'buf' [-Wunused-variable]
   char   buf[256];
          ^~~
../../../src/tools/gmx_anaeig.c:97:16: warning: unused variable 'm' [-Wunused-variable]
   int    i,j,k,m;
                ^
../../../src/tools/gmx_anaeig.c:97:14: warning: unused variable 'k' [-Wunused-variable]
   int    i,j,k,m;
              ^
../../../src/tools/gmx_anaeig.c:97:12: warning: unused variable 'j' [-Wunused-variable]
   int    i,j,k,m;
            ^
../../../src/tools/gmx_anaeig.c:96:11: warning: unused variable 'indx' [-Wunused-variable]
   int    *indx;
           ^~~~
../../../src/tools/gmx_anaeig.c: In function 'compare':
../../../src/tools/gmx_anaeig.c:224:12: warning: unused variable 'nrow' [-Wunused-variable]
   int    n,nrow;
            ^~~~
../../../src/tools/gmx_anaeig.c: In function 'rmsf':
../../../src/tools/gmx_anaeig.c:692:9: warning: unused variable 'nrow' [-Wunused-variable]
   int   nrow,g,v,i;
         ^~~~
../../../src/tools/gmx_anaeig.c: In function 'gmx_anaeig':
../../../src/tools/gmx_anaeig.c:1015:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
     if (i!=natoms)
     ^~
../../../src/tools/gmx_anaeig.c:1017:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
       printf("\n");
       ^~~~~~
../../../src/tools/gmx_anaeig.c:835:21: warning: unused variable 'step' [-Wunused-variable]
   int        natoms,step;
                     ^~~~
../../../src/tools/gmx_anaeig.c:834:42: warning: unused variable 'lambda' [-Wunused-variable]
   real       xid,totmass,*sqrtm,*w_rls,t,lambda;
                                          ^~~~~~
../../../src/tools/gmx_anaeig.c:834:14: warning: unused variable 'xid' [-Wunused-variable]
   real       xid,totmass,*sqrtm,*w_rls,t,lambda;
              ^~~
../../../src/tools/gmx_anaeig.c:832:18: warning: unused variable 'xread' [-Wunused-variable]
   rvec       *x,*xread,*xav1,*xav2,**eigvec1=NULL,**eigvec2=NULL;
                  ^~~~~
../../../src/tools/gmx_anaeig.c:832:15: warning: unused variable 'x' [-Wunused-variable]
   rvec       *x,*xread,*xav1,*xav2,**eigvec1=NULL,**eigvec2=NULL;
               ^
../../../src/tools/gmx_anaeig.c:825:21: warning: unused variable 'trjout' [-Wunused-variable]
   int        status,trjout;
                     ^~~~~~
../../../src/tools/gmx_anaeig.c:825:14: warning: unused variable 'status' [-Wunused-variable]
   int        status,trjout;
              ^~~~~~
../../../src/tools/gmx_anaeig.c:824:15: warning: unused variable 'out' [-Wunused-variable]
   FILE       *out;
               ^~~
In file included from ../../../src/tools/gmx_anaeig.c:53:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
In file included from ../../../src/tools/gmx_anaeig.c:49:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_anaeig.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_anaeig.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_anaeig.c:41:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_dyndom.lo ../../../src/tools/gmx_dyndom.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_dyndom.c  -fPIC -DPIC -o .libs/gmx_dyndom.o
../../../src/tools/gmx_dyndom.c: In function 'rot_conf':
../../../src/tools/gmx_dyndom.c:60:14: warning: unused variable 'j' [-Wunused-variable]
   int      i,j,ai;
              ^
../../../src/tools/gmx_dyndom.c:58:43: warning: unused variable 'temp43' [-Wunused-variable]
   mat4     temp1,temp2,temp3,temp4,temp21,temp43;
                                           ^~~~~~
../../../src/tools/gmx_dyndom.c:58:36: warning: unused variable 'temp21' [-Wunused-variable]
   mat4     temp1,temp2,temp3,temp4,temp21,temp43;
                                    ^~~~~~
../../../src/tools/gmx_dyndom.c:58:30: warning: unused variable 'temp4' [-Wunused-variable]
   mat4     temp1,temp2,temp3,temp4,temp21,temp43;
                              ^~~~~
../../../src/tools/gmx_dyndom.c:57:49: warning: unused variable 'Tx' [-Wunused-variable]
   mat4     Rx,Ry,Rz,Rinvy,Rinvz,Mtot,Tcm,Tinvcm,Tx;
                                                 ^~
../../../src/tools/gmx_dyndom.c:57:42: warning: unused variable 'Tinvcm' [-Wunused-variable]
   mat4     Rx,Ry,Rz,Rinvy,Rinvz,Mtot,Tcm,Tinvcm,Tx;
                                          ^~~~~~
../../../src/tools/gmx_dyndom.c:57:38: warning: unused variable 'Tcm' [-Wunused-variable]
   mat4     Rx,Ry,Rz,Rinvy,Rinvz,Mtot,Tcm,Tinvcm,Tx;
                                      ^~~
../../../src/tools/gmx_dyndom.c:55:18: warning: unused variable 'center' [-Wunused-variable]
   rvec     arrow,center,xcm;
                  ^~~~~~
In file included from ../../../src/tools/gmx_dyndom.c:47:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_dyndom.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_dyndom.c:43:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_dyndom.c:41:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_spatial.lo ../../../src/tools/gmx_spatial.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_spatial.c  -fPIC -DPIC -o .libs/gmx_spatial.o
../../../src/tools/gmx_spatial.c: In function 'gmx_spatial':
../../../src/tools/gmx_spatial.c:131:21: warning: unused variable 'shx' [-Wunused-variable]
   rvec       *xtop,*shx[26];
                     ^~~
../../../src/tools/gmx_spatial.c:103:15: warning: unused variable 'bSHIFT' [-Wunused-variable]
   static bool bSHIFT=FALSE;
               ^~~~~~
At top level:
../../../src/tools/gmx_spatial.c:103:15: warning: 'bSHIFT' defined but not used [-Wunused-variable]
In file included from ../../../src/tools/gmx_spatial.c:44:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_spatial.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_spatial.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_spatial.c:40:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
../../../src/tools/gmx_spatial.c:38:14: warning: 'SRCID_template_c' defined but not used [-Wunused-variable]
 static char *SRCID_template_c = "$Id$";
              ^~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_lie.lo ../../../src/tools/gmx_lie.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_lie.c  -fPIC -DPIC -o .libs/gmx_lie.o
In file included from ../../../src/tools/gmx_lie.c:52:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_lie.c:51:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_lie.c:51:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_lie.c:45:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_enemat.lo ../../../src/tools/gmx_enemat.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_enemat.c  -fPIC -DPIC -o .libs/gmx_enemat.o
In file included from ../../../src/tools/gmx_enemat.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_enemat.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_enemat.c:45:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_enemat.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_dist.lo ../../../src/tools/gmx_dist.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_dist.c  -fPIC -DPIC -o .libs/gmx_dist.o
../../../src/tools/gmx_dist.c: In function 'gmx_dist':
../../../src/tools/gmx_dist.c:101:21: warning: unused variable 'fplt' [-Wunused-variable]
   FILE    *fp=NULL,*fplt=NULL;
                     ^~~~
../../../src/tools/gmx_dist.c:93:11: warning: unused variable 'aid' [-Wunused-variable]
   atom_id aid;
           ^~~
../../../src/tools/gmx_dist.c:87:17: warning: unused variable 'v' [-Wunused-variable]
   rvec *x=NULL,*v=NULL,dx;
                 ^
In file included from ../../../src/tools/gmx_dist.c:48:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_dist.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_dist.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_dist.c:45:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_kinetics.lo ../../../src/tools/gmx_kinetics.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_kinetics.c  -fPIC -DPIC -o .libs/gmx_kinetics.o
../../../src/tools/gmx_kinetics.c: In function 'epnm':
../../../src/tools/gmx_kinetics.c:96:16: warning: unused variable 'ii' [-Wunused-variable]
   int    nn,ni,ii;
                ^~
../../../src/tools/gmx_kinetics.c:96:13: warning: unused variable 'ni' [-Wunused-variable]
   int    nn,ni,ii;
             ^~
../../../src/tools/gmx_kinetics.c:96:10: warning: unused variable 'nn' [-Wunused-variable]
   int    nn,ni,ii;
          ^~
../../../src/tools/gmx_kinetics.c:95:31: warning: unused variable 'to' [-Wunused-variable]
   static char buf[32],from[8],to[8];
                               ^~
../../../src/tools/gmx_kinetics.c:95:23: warning: unused variable 'from' [-Wunused-variable]
   static char buf[32],from[8],to[8];
                       ^~~~
../../../src/tools/gmx_kinetics.c:95:15: warning: unused variable 'buf' [-Wunused-variable]
   static char buf[32],from[8],to[8];
               ^~~
../../../src/tools/gmx_kinetics.c: In function 'dump_remd_parameters':
../../../src/tools/gmx_kinetics.c:559:8: warning: unused variable 'rhs' [-Wunused-variable]
   real rhs,tauf,taub,fff,DG;
        ^~~
At top level:
../../../src/tools/gmx_kinetics.c:95:15: warning: 'buf' defined but not used [-Wunused-variable]
   static char buf[32],from[8],to[8];
               ^~~
../../../src/tools/gmx_kinetics.c:95:23: warning: 'from' defined but not used [-Wunused-variable]
   static char buf[32],from[8],to[8];
                       ^~~~
../../../src/tools/gmx_kinetics.c:95:31: warning: 'to' defined but not used [-Wunused-variable]
   static char buf[32],from[8],to[8];
                               ^~
../../../src/tools/gmx_kinetics.c:85:14: warning: 'itoa' defined but not used [-Wunused-function]
 static char *itoa(int i)
              ^~~~
In file included from ../../../src/tools/gmx_kinetics.c:49:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_kinetics.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_kinetics.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_kinetics.c:42:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_h2order.lo ../../../src/tools/gmx_h2order.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_h2order.c  -fPIC -DPIC -o .libs/gmx_h2order.o
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_h2order.c:54:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_h2order.c:52:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_h2order.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_h2order.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_filter.lo ../../../src/tools/gmx_filter.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_filter.c  -fPIC -DPIC -o .libs/gmx_filter.o
In file included from ../../../src/tools/gmx_filter.c:53:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_filter.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_filter.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_filter.c:42:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_gyrate.lo ../../../src/tools/gmx_gyrate.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_gyrate.c  -fPIC -DPIC -o .libs/gmx_gyrate.o
../../../src/tools/gmx_gyrate.c: In function 'gmx_gyrate':
../../../src/tools/gmx_gyrate.c:190:14: warning: unused variable 'i' [-Wunused-variable]
   int        i,j,m,gnx,nam,mol;
              ^
In file included from ../../../src/tools/gmx_gyrate.c:50:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_gyrate.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_gyrate.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_gyrate.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_cluster.lo ../../../src/tools/gmx_cluster.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_cluster.c  -fPIC -DPIC -o .libs/gmx_cluster.o
../../../src/tools/gmx_cluster.c: In function 'mark_clusters':
../../../src/tools/gmx_cluster.c:638:11: warning: unused variable 'v' [-Wunused-variable]
   int i,j,v;
           ^
../../../src/tools/gmx_cluster.c: In function 'gmx_cluster':
../../../src/tools/gmx_cluster.c:1341:7: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
       for(i=0; (i<nf); i++)
       ^~~
../../../src/tools/gmx_cluster.c:1343:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
           ffclose(fp);
           ^~~~~~~
In file included from ../../../src/tools/gmx_cluster.c:49:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_cluster.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_cluster.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_cluster.c:45:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_helix.lo ../../../src/tools/gmx_helix.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_helix.c  -fPIC -DPIC -o .libs/gmx_helix.o
../../../src/tools/gmx_helix.c: In function 'gmx_helix':
../../../src/tools/gmx_helix.c:213:21: warning: unused variable 'nre' [-Wunused-variable]
   int        natoms,nre,nres,step;
                     ^~~
In file included from ../../../src/tools/gmx_helix.c:62:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/tools/gmx_helix.c:51:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/gmx_helix.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_helix.c:43:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_disre.lo ../../../src/tools/gmx_disre.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_disre.c  -fPIC -DPIC -o .libs/gmx_disre.o
../../../src/tools/gmx_disre.c: In function 'check_viol':
../../../src/tools/gmx_disre.c:144:11: warning: variable 'ener' set but not used [-Wunused-but-set-variable]
   real    ener,rt,mviol,tviol,viol,lam,dvdl,drt;
           ^~~~
../../../src/tools/gmx_disre.c: In function 'dump_disre_matrix':
../../../src/tools/gmx_disre.c:449:12: warning: unused variable 'iii' [-Wunused-variable]
   int      iii,i,j,nra,nratoms,tp,ri,rj,index,nlabel,label;
            ^~~
In file included from ../../../src/tools/gmx_disre.c:57:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/tools/gmx_disre.c:54:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_disre.c:53:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_disre.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_disre.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_disre.c:44:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_morph.lo ../../../src/tools/gmx_morph.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_morph.c  -fPIC -DPIC -o .libs/gmx_morph.o
In file included from ../../../src/tools/gmx_morph.c:44:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_morph.c:40:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_mindist.lo ../../../src/tools/gmx_mindist.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_mindist.c  -fPIC -DPIC -o .libs/gmx_mindist.o
../../../src/tools/gmx_mindist.c: In function 'periodic_mindist_plot':
../../../src/tools/gmx_mindist.c:114:10: warning: unused variable 'r' [-Wunused-variable]
   real   r,rmin,rmax,rmint,tmint;
          ^
../../../src/tools/gmx_mindist.c: In function 'dist_plot':
../../../src/tools/gmx_mindist.c:245:16: warning: unused variable 'frout' [-Wunused-variable]
   t_trxframe   frout;
                ^~~~~
../../../src/tools/gmx_mindist.c: In function 'gmx_mindist':
../../../src/tools/gmx_mindist.c:473:15: warning: unused variable 'j' [-Wunused-variable]
   int       i,j,nres=0;
               ^
../../../src/tools/gmx_mindist.c:472:14: warning: unused variable 'atm' [-Wunused-variable]
   FILE      *atm;
              ^~~
../../../src/tools/gmx_mindist.c:467:14: warning: unused variable 't' [-Wunused-variable]
   real       t;
              ^
../../../src/tools/gmx_mindist.c:441:16: warning: unused variable 'bugs' [-Wunused-variable]
   static char *bugs[] = {
                ^~~~
At top level:
../../../src/tools/gmx_mindist.c:441:16: warning: 'bugs' defined but not used [-Wunused-variable]
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_mindist.c:53:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_mindist.c:51:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_mindist.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_mindist.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_nmens.lo ../../../src/tools/gmx_nmens.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_nmens.c  -fPIC -DPIC -o .libs/gmx_nmens.o
../../../src/tools/gmx_nmens.c: In function 'gmx_nmens':
../../../src/tools/gmx_nmens.c:105:14: warning: unused variable 'eigvalnr' [-Wunused-variable]
   int *      eigvalnr;
              ^~~~~~~~
../../../src/tools/gmx_nmens.c:104:19: warning: unused variable 'invfr' [-Wunused-variable]
   real       rfac,invfr,rhalf,jr;
                   ^~~~~
../../../src/tools/gmx_nmens.c:99:21: warning: unused variable 'neigval' [-Wunused-variable]
   int        natoms,neigval;
                     ^~~~~~~
../../../src/tools/gmx_nmens.c:98:22: warning: unused variable 'totmass' [-Wunused-variable]
   real       *eigval,totmass,*invsqrtm,t,disp;
                      ^~~~~~~
../../../src/tools/gmx_nmens.c:89:21: warning: unused variable 'trjout' [-Wunused-variable]
   int        status,trjout;
                     ^~~~~~
../../../src/tools/gmx_nmens.c:89:14: warning: unused variable 'status' [-Wunused-variable]
   int        status,trjout;
              ^~~~~~
In file included from ../../../src/tools/gmx_nmens.c:54:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/tools/gmx_nmens.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_nmens.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_nmens.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_nmens.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_msd.lo ../../../src/tools/gmx_msd.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_msd.c  -fPIC -DPIC -o .libs/gmx_msd.o
../../../src/tools/gmx_msd.c: In function 'printmol':
../../../src/tools/gmx_msd.c:455:13: warning: unused variable 'r' [-Wunused-variable]
   real  a,b,r,D,Dav,D2av,VarD,sqrtD,sqrtD_max,scale;
             ^
../../../src/tools/gmx_msd.c:452:14: warning: unused variable 'out_pdb' [-Wunused-variable]
   FILE  *out,out_pdb;
              ^~~~~~~
At top level:
../../../src/tools/gmx_msd.c:144:13: warning: 'done_corr' defined but not used [-Wunused-function]
 static void done_corr(t_corr *this)
             ^~~~~~~~~
In file included from ../../../src/tools/gmx_msd.c:57:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/tools/gmx_msd.c:51:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_msd.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_msd.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_msd.c:57:
../../../src/tools/gmx_msd.c: In function 'corr_loop':
../../../include/vec.h:362:8: warning: '*((void *)&com+16)' may be used uninitialized in this function [-Wmaybe-uninitialized]
   b[ZZ]=a[ZZ];
   ~~~~~^~~~~~
../../../src/tools/gmx_msd.c:525:29: note: '*((void *)&com+16)' was declared here
   rvec         *x[2],*xa[2],com;
                             ^~~
In file included from ../../../src/tools/gmx_msd.c:57:
../../../include/vec.h:361:8: warning: '*((void *)&com+8)' may be used uninitialized in this function [-Wmaybe-uninitialized]
   b[YY]=a[YY];
   ~~~~~^~~~~~
../../../src/tools/gmx_msd.c:525:29: note: '*((void *)&com+8)' was declared here
   rvec         *x[2],*xa[2],com;
                             ^~~
In file included from ../../../src/tools/gmx_msd.c:57:
../../../include/vec.h:360:8: warning: 'com' may be used uninitialized in this function [-Wmaybe-uninitialized]
   b[XX]=a[XX];
   ~~~~~^~~~~~
../../../src/tools/gmx_msd.c:525:29: note: 'com' was declared here
   rvec         *x[2],*xa[2],com;
                             ^~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_dipoles.lo ../../../src/tools/gmx_dipoles.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_dipoles.c  -fPIC -DPIC -o .libs/gmx_dipoles.o
../../../src/tools/gmx_dipoles.c: In function 'do_gkr':
../../../src/tools/gmx_dipoles.c:156:17: warning: unused variable 'r2' [-Wunused-variable]
   real   qtot,q,r2,cosa,rr,phi;
                 ^~
../../../src/tools/gmx_dipoles.c:155:30: warning: unused variable 'index' [-Wunused-variable]
   int    gi,gj,j0,j1,i,j,k,n,index,grp0,grp1;
                              ^~~~~
../../../src/tools/gmx_dipoles.c: In function 'print_gkrbin':
../../../src/tools/gmx_dipoles.c:291:14: warning: unused variable 'n' [-Wunused-variable]
   int    i,j,n,last;
              ^
../../../src/tools/gmx_dipoles.c:291:12: warning: unused variable 'j' [-Wunused-variable]
   int    i,j,n,last;
            ^
../../../src/tools/gmx_dipoles.c: In function 'mol_quad':
../../../src/tools/gmx_dipoles.c:418:17: warning: unused variable 'rcom_n' [-Wunused-variable]
   real   rcom_m,rcom_n;
                 ^~~~~~
../../../src/tools/gmx_dipoles.c:418:10: warning: unused variable 'rcom_m' [-Wunused-variable]
   real   rcom_m,rcom_n;
          ^~~~~~
../../../src/tools/gmx_dipoles.c: In function 'compute_avercos':
../../../src/tools/gmx_dipoles.c:580:19: warning: unused variable 'n5' [-Wunused-variable]
   double dc,dc1,d,n5,ddc1,ddc2,ddc3;
                   ^~
../../../src/tools/gmx_dipoles.c:580:13: warning: unused variable 'dc1' [-Wunused-variable]
   double dc,dc1,d,n5,ddc1,ddc2,ddc3;
             ^~~
../../../src/tools/gmx_dipoles.c: In function 'do_dip':
../../../src/tools/gmx_dipoles.c:872:8: warning: unused variable 'gi' [-Wunused-variable]
    int gi,ind0,ind1;
        ^~
../../../src/tools/gmx_dipoles.c:675:27: warning: unused variable 'Vol' [-Wunused-variable]
   t_lsq      Mx,My,Mz,Msq,Vol;
                           ^~~
../../../src/tools/gmx_dipoles.c:675:23: warning: unused variable 'Msq' [-Wunused-variable]
   t_lsq      Mx,My,Mz,Msq,Vol;
                       ^~~
../../../src/tools/gmx_dipoles.c:675:20: warning: unused variable 'Mz' [-Wunused-variable]
   t_lsq      Mx,My,Mz,Msq,Vol;
                    ^~
../../../src/tools/gmx_dipoles.c:675:17: warning: unused variable 'My' [-Wunused-variable]
   t_lsq      Mx,My,Mz,Msq,Vol;
                 ^~
../../../src/tools/gmx_dipoles.c:675:14: warning: unused variable 'Mx' [-Wunused-variable]
   t_lsq      Mx,My,Mz,Msq,Vol;
              ^~
../../../src/tools/gmx_dipoles.c:668:32: warning: unused variable 'lambda' [-Wunused-variable]
   real       rcut=0,t,t0,t1,dt,lambda,dd,rms_cos;
                                ^~~~~~
../../../src/tools/gmx_dipoles.c:667:25: warning: unused variable 'buf' [-Wunused-variable]
   char       **enm=NULL,buf[STRLEN];
                         ^~~
../../../src/tools/gmx_dipoles.c:665:44: warning: unused variable 'step' [-Wunused-variable]
   int        *dipole_bin,ndipbin,ibin,iVol,step,idim=-1;
                                            ^~~~
../../../src/tools/gmx_dipoles.c:664:32: warning: unused variable 'nmol' [-Wunused-variable]
   int        i,j,k,n,m,natom=0,nmol,status,gnx_tot,teller,tel3;
                                ^~~~
../../../src/tools/gmx_dipoles.c:664:18: warning: unused variable 'k' [-Wunused-variable]
   int        i,j,k,n,m,natom=0,nmol,status,gnx_tot,teller,tel3;
                  ^
../../../src/tools/gmx_dipoles.c:664:16: warning: unused variable 'j' [-Wunused-variable]
   int        i,j,k,n,m,natom=0,nmol,status,gnx_tot,teller,tel3;
                ^
../../../src/tools/gmx_dipoles.c: In function 'gmx_dipoles':
../../../src/tools/gmx_dipoles.c:1271:16: warning: unused variable 'bCorr' [-Wunused-variable]
   bool         bCorr,bQuad,bGkr,bMU,bSlab;
                ^~~~~
../../../src/tools/gmx_dipoles.c:1227:31: warning: unused variable 'bMolCorr' [-Wunused-variable]
   static bool bAverCorr=FALSE,bMolCorr=FALSE,bPairs=TRUE,bPhi=FALSE;
                               ^~~~~~~~
../../../src/tools/gmx_dipoles.c:1227:15: warning: variable 'bAverCorr' set but not used [-Wunused-but-set-variable]
   static bool bAverCorr=FALSE,bMolCorr=FALSE,bPairs=TRUE,bPhi=FALSE;
               ^~~~~~~~~
At top level:
../../../src/tools/gmx_dipoles.c:1227:31: warning: 'bMolCorr' defined but not used [-Wunused-variable]
   static bool bAverCorr=FALSE,bMolCorr=FALSE,bPairs=TRUE,bPhi=FALSE;
                               ^~~~~~~~
In file included from ../../../src/tools/gmx_dipoles.c:49:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_dipoles.c:46:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_dipoles.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_dipoles.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_principal.lo ../../../src/tools/gmx_principal.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_principal.c  -fPIC -DPIC -o .libs/gmx_principal.o
../../../src/tools/gmx_principal.c: In function 'gmx_principal':
../../../src/tools/gmx_principal.c:97:20: warning: unused variable 'a3' [-Wunused-variable]
   rvec       a1,a2,a3,moi;
                    ^~
../../../src/tools/gmx_principal.c:97:17: warning: unused variable 'a2' [-Wunused-variable]
   rvec       a1,a2,a3,moi;
                 ^~
../../../src/tools/gmx_principal.c:97:14: warning: unused variable 'a1' [-Wunused-variable]
   rvec       a1,a2,a3,moi;
              ^~
../../../src/tools/gmx_principal.c:95:28: warning: unused variable 'mol' [-Wunused-variable]
   int        i,j,m,gnx,nam,mol;
                            ^~~
../../../src/tools/gmx_principal.c:95:24: warning: unused variable 'nam' [-Wunused-variable]
   int        i,j,m,gnx,nam,mol;
                        ^~~
../../../src/tools/gmx_principal.c:95:18: warning: unused variable 'm' [-Wunused-variable]
   int        i,j,m,gnx,nam,mol;
                  ^
../../../src/tools/gmx_principal.c:95:16: warning: unused variable 'j' [-Wunused-variable]
   int        i,j,m,gnx,nam,mol;
                ^
../../../src/tools/gmx_principal.c:95:14: warning: unused variable 'i' [-Wunused-variable]
   int        i,j,m,gnx,nam,mol;
              ^
In file included from ../../../src/tools/gmx_principal.c:50:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_principal.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_principal.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_principal.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_nmeig.lo ../../../src/tools/gmx_nmeig.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_nmeig.c  -fPIC -DPIC -o .libs/gmx_nmeig.o
../../../src/tools/gmx_nmeig.c: In function 'nma_full_hessian':
../../../src/tools/gmx_nmeig.c:76:19: warning: unused variable 'rdum' [-Wunused-variable]
     real mass_fac,rdum;
                   ^~~~
../../../src/tools/gmx_nmeig.c: In function 'gmx_nmeig':
../../../src/tools/gmx_nmeig.c:229:15: warning: unused variable 'index' [-Wunused-variable]
   atom_id    *index;
               ^~~~~
../../../src/tools/gmx_nmeig.c:227:24: warning: unused variable 'gnx' [-Wunused-variable]
   int        i,j,k,l,d,gnx;
                        ^~~
../../../src/tools/gmx_nmeig.c:227:22: warning: unused variable 'd' [-Wunused-variable]
   int        i,j,k,l,d,gnx;
                      ^
../../../src/tools/gmx_nmeig.c:227:20: warning: unused variable 'l' [-Wunused-variable]
   int        i,j,k,l,d,gnx;
                    ^
../../../src/tools/gmx_nmeig.c:226:15: warning: unused variable 'grpname' [-Wunused-variable]
   char       *grpname,title[256];
               ^~~~~~~
../../../src/tools/gmx_nmeig.c:225:36: warning: unused variable 'count' [-Wunused-variable]
   int        natoms,ndim,nrow,ncol,count;
                                    ^~~~~
../../../src/tools/gmx_nmeig.c:224:19: warning: unused variable 'mass_fac' [-Wunused-variable]
   real       rdum,mass_fac;
                   ^~~~~~~~
../../../src/tools/gmx_nmeig.c:224:14: warning: unused variable 'rdum' [-Wunused-variable]
   real       rdum,mass_fac;
              ^~~~
../../../src/tools/gmx_nmeig.c:217:21: warning: unused variable 'trjout' [-Wunused-variable]
   int        status,trjout;
                     ^~~~~~
../../../src/tools/gmx_nmeig.c:217:14: warning: unused variable 'status' [-Wunused-variable]
   int        status,trjout;
              ^~~~~~
In file included from ../../../src/tools/gmx_nmeig.c:50:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_nmeig.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_nmeig.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_nmeig.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_polystat.lo ../../../src/tools/gmx_polystat.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_polystat.c  -fPIC -DPIC -o .libs/gmx_polystat.o
In file included from ../../../src/tools/gmx_polystat.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_polystat.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_polystat.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_polystat.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_potential.lo ../../../src/tools/gmx_potential.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_potential.c  -fPIC -DPIC -o .libs/gmx_potential.o
../../../src/tools/gmx_potential.c: In function 'calc_potential':
../../../src/tools/gmx_potential.c:108:9: warning: unused variable 'j' [-Wunused-variable]
       i,j,n,             /* loop indices */
         ^
../../../src/tools/gmx_potential.c:107:9: warning: unused variable 'slCount' [-Wunused-variable]
       **slCount,         /* nr. of atoms in one slice for a group */
         ^~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_potential.c:55:
At top level:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_potential.c:53:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_potential.c:50:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_potential.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_rama.lo ../../../src/tools/gmx_rama.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_rama.c  -fPIC -DPIC -o .libs/gmx_rama.o
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_rama.c:52:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_rama.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_rama.c:46:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_rama.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_order.lo ../../../src/tools/gmx_order.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_order.c  -fPIC -DPIC -o .libs/gmx_order.o
../../../src/tools/gmx_order.c: In function 'find_nearest_neighbours':
../../../src/tools/gmx_order.c:86:12: warning: unused variable 'nnb' [-Wunused-variable]
   int    **nnb;
            ^~~
../../../src/tools/gmx_order.c:85:14: warning: unused variable 'mm' [-Wunused-variable]
   int     m1,mm;
              ^~
../../../src/tools/gmx_order.c:85:11: warning: unused variable 'm1' [-Wunused-variable]
   int     m1,mm;
           ^~
../../../src/tools/gmx_order.c:84:12: warning: unused variable 'd' [-Wunused-variable]
   t_dist  *d;
            ^
../../../src/tools/gmx_order.c:83:12: warning: unused variable 'dmat' [-Wunused-variable]
   t_mat   *dmat;
            ^~~~
../../../src/tools/gmx_order.c:80:18: warning: unused variable 'dx2' [-Wunused-variable]
   rvec    dx,dx1,dx2,rj,rk,urk,urj;
                  ^~~
../../../src/tools/gmx_order.c:80:14: warning: unused variable 'dx1' [-Wunused-variable]
   rvec    dx,dx1,dx2,rj,rk,urk,urj;
              ^~~
../../../src/tools/gmx_order.c:79:14: warning: unused variable 'i2' [-Wunused-variable]
   int     i1,i2,i,ibin,j,k,l,n,*nn[4];
              ^~
../../../src/tools/gmx_order.c:79:11: warning: unused variable 'i1' [-Wunused-variable]
   int     i1,i2,i,ibin,j,k,l,n,*nn[4];
           ^~
../../../src/tools/gmx_order.c:77:11: warning: unused variable 'fnsgdist' [-Wunused-variable]
   char    fnsgdist[32];
           ^~~~~~~~
../../../src/tools/gmx_order.c:76:12: warning: unused variable 'fpoutdist' [-Wunused-variable]
   FILE    *fpoutdist;
            ^~~~~~~~~
../../../src/tools/gmx_order.c: In function 'calc_tetra_order_parm':
../../../src/tools/gmx_order.c:228:14: warning: unused variable 'i' [-Wunused-variable]
   int        i,*isize,ng,nframes;
              ^
../../../src/tools/gmx_order.c:219:39: warning: unused variable 'subtitle' [-Wunused-variable]
   char       title[STRLEN],fn[STRLEN],subtitle[STRLEN];
                                       ^~~~~~~~
../../../src/tools/gmx_order.c:219:28: warning: unused variable 'fn' [-Wunused-variable]
   char       title[STRLEN],fn[STRLEN],subtitle[STRLEN];
                            ^~
../../../src/tools/gmx_order.c: In function 'calc_order':
../../../src/tools/gmx_order.c:315:9: warning: unused variable 'dbangle' [-Wunused-variable]
    real dbangle = 0, /* angle between double bond and  axis            */
         ^~~~~~~
../../../src/tools/gmx_order.c:311:13: warning: unused variable 'l' [-Wunused-variable]
     i,j,m,k,l,teller = 0,
             ^
../../../src/tools/gmx_order.c: In function 'gmx_order':
../../../src/tools/gmx_order.c:556:13: warning: unused variable 'i' [-Wunused-variable]
             i,
             ^
In file included from ../../../src/tools/gmx_order.c:52:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_order.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_order.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/gmx_order.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_saltbr.lo ../../../src/tools/gmx_saltbr.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_saltbr.c  -fPIC -DPIC -o .libs/gmx_saltbr.o
../../../src/tools/gmx_saltbr.c: In function 'gmx_saltbr':
../../../src/tools/gmx_saltbr.c:163:14: warning: unused variable 'label' [-Wunused-variable]
   char       label[234];
              ^~~~~
../../../src/tools/gmx_saltbr.c:162:17: warning: unused variable 'dt' [-Wunused-variable]
   double     t0,dt;
                 ^~
../../../src/tools/gmx_saltbr.c:162:14: warning: unused variable 't0' [-Wunused-variable]
   double     t0,dt;
              ^~
../../../src/tools/gmx_saltbr.c:156:50: warning: unused variable 'n3' [-Wunused-variable]
   int        status,i,j,k,m,nnn,teller,ncg,n1,n2,n3,natoms;
                                                  ^~
../../../src/tools/gmx_saltbr.c:156:47: warning: unused variable 'n2' [-Wunused-variable]
   int        status,i,j,k,m,nnn,teller,ncg,n1,n2,n3,natoms;
                                               ^~
../../../src/tools/gmx_saltbr.c:156:44: warning: unused variable 'n1' [-Wunused-variable]
   int        status,i,j,k,m,nnn,teller,ncg,n1,n2,n3,natoms;
                                            ^~
In file included from ../../../src/tools/gmx_saltbr.c:48:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_saltbr.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_saltbr.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_saltbr.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_rmsf.lo ../../../src/tools/gmx_rmsf.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_rmsf.c  -fPIC -DPIC -o .libs/gmx_rmsf.o
../../../src/tools/gmx_rmsf.c: In function 'gmx_rmsf':
../../../src/tools/gmx_rmsf.c:211:16: warning: unused variable 'buf' [-Wunused-variable]
   char         buf[256],*label;
                ^~~
../../../src/tools/gmx_rmsf.c:210:33: warning: unused variable 'res0' [-Wunused-variable]
   int          status,npdbatoms,res0;
                                 ^~~~
../../../src/tools/gmx_rmsf.c:206:16: warning: unused variable 'bCont' [-Wunused-variable]
   bool         bCont;
                ^~~~~
../../../src/tools/gmx_rmsf.c:202:16: warning: unused variable 'ir' [-Wunused-variable]
   t_inputrec   ir;
                ^~
../../../src/tools/gmx_rmsf.c:201:16: warning: unused variable 'header' [-Wunused-variable]
   t_tpxheader  header;
                ^~~~~~
../../../src/tools/gmx_rmsf.c:199:33: warning: unused variable 'w_rms' [-Wunused-variable]
   real         t,lambda,*w_rls,*w_rms;
                                 ^~~~~
../../../src/tools/gmx_rmsf.c:199:18: warning: unused variable 'lambda' [-Wunused-variable]
   real         t,lambda,*w_rls,*w_rms;
                  ^~~~~~
../../../src/tools/gmx_rmsf.c:198:40: warning: unused variable 'g' [-Wunused-variable]
   int          step,nre,natom,natoms,i,g,m,teller=0;
                                        ^
../../../src/tools/gmx_rmsf.c:198:31: warning: unused variable 'natoms' [-Wunused-variable]
   int          step,nre,natom,natoms,i,g,m,teller=0;
                               ^~~~~~
../../../src/tools/gmx_rmsf.c:198:21: warning: unused variable 'nre' [-Wunused-variable]
   int          step,nre,natom,natoms,i,g,m,teller=0;
                     ^~~
../../../src/tools/gmx_rmsf.c:198:16: warning: unused variable 'step' [-Wunused-variable]
   int          step,nre,natom,natoms,i,g,m,teller=0;
                ^~~~
../../../src/tools/gmx_rmsf.c:189:39: warning: unused variable 'bdevX' [-Wunused-variable]
   static bool bRes=FALSE,bAniso=FALSE,bdevX=FALSE,bFit=TRUE;
                                       ^~~~~
At top level:
../../../src/tools/gmx_rmsf.c:189:39: warning: 'bdevX' defined but not used [-Wunused-variable]
In file included from ../../../src/tools/gmx_rmsf.c:50:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/tools/gmx_rmsf.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_rmsf.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_rmsf.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_rmsf.c:45:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_rotacf.lo ../../../src/tools/gmx_rotacf.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_rotacf.c  -fPIC -DPIC -o .libs/gmx_rotacf.o
In file included from ../../../src/tools/gmx_rotacf.c:54:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_rotacf.c:54:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_rotacf.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_rotacf.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_rms.lo ../../../src/tools/gmx_rms.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_rms.c  -fPIC -DPIC -o .libs/gmx_rms.o
In file included from ../../../src/tools/gmx_rms.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_rms.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_rms.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_rms.c:46:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_sas.lo ../../../src/tools/gmx_sas.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_sas.c  -fPIC -DPIC -o .libs/gmx_sas.o
../../../src/tools/gmx_sas.c: In function 'sas_plot':
../../../src/tools/gmx_sas.c:369:12: warning: unused variable 'mm' [-Wunused-variable]
       real mm;
            ^~
In file included from ../../../src/tools/gmx_sas.c:55:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_sas.c:52:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_sas.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_sas.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_sas.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
../../../src/tools/gmx_sas.c: In function 'connelly_plot':
../../../src/tools/gmx_sas.c:152:45: warning: '%d' directive writing between 1 and 11 bytes into a region of size 6 [-Wformat-overflow=]
       sprintf(atoms->pdbinfo[ii0].pdbresnr,"%d",r0+1);
                                             ^~
../../../src/tools/gmx_sas.c:152:44: note: directive argument in the range [-2147483647, 2147483647]
       sprintf(atoms->pdbinfo[ii0].pdbresnr,"%d",r0+1);
                                            ^~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/tools/gmx_sas.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 2 and 12 bytes into a destination of size 6
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_sgangle.lo ../../../src/tools/gmx_sgangle.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_sgangle.c  -fPIC -DPIC -o .libs/gmx_sgangle.o
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_sgangle.c:52:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_sgangle.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_sgangle.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_sgangle.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_energy.lo ../../../src/tools/gmx_energy.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_energy.c  -fPIC -DPIC -o .libs/gmx_energy.o
../../../src/tools/gmx_energy.c: In function 'select_by_name':
../../../src/tools/gmx_energy.c:139:8: warning: unused variable 'n' [-Wunused-variable]
   int  n,k,kk,j,i,nmatch,nind,nss;
        ^
../../../src/tools/gmx_energy.c: In function 'analyse_ener':
../../../src/tools/gmx_energy.c:529:16: warning: unused variable 'kkk' [-Wunused-variable]
   int  i,j,m,k,kkk;
                ^~~
../../../src/tools/gmx_energy.c:524:30: warning: unused variable 'diffav' [-Wunused-variable]
   real sfrac,oldfrac,diffsum,diffav,fstep,pr_aver,pr_stddev,fluct2;
                              ^~~~~~
../../../src/tools/gmx_energy.c:524:22: warning: unused variable 'diffsum' [-Wunused-variable]
   real sfrac,oldfrac,diffsum,diffav,fstep,pr_aver,pr_stddev,fluct2;
                      ^~~~~~~
../../../src/tools/gmx_energy.c:524:14: warning: unused variable 'oldfrac' [-Wunused-variable]
   real sfrac,oldfrac,diffsum,diffav,fstep,pr_aver,pr_stddev,fluct2;
              ^~~~~~~
../../../src/tools/gmx_energy.c:524:8: warning: unused variable 'sfrac' [-Wunused-variable]
   real sfrac,oldfrac,diffsum,diffav,fstep,pr_aver,pr_stddev,fluct2;
        ^~~~~
../../../src/tools/gmx_energy.c: In function 'fec':
../../../src/tools/gmx_energy.c:770:8: warning: unused variable 't' [-Wunused-variable]
   real t, aver, beta;
        ^
../../../src/tools/gmx_energy.c:766:22: warning: unused variable 'step' [-Wunused-variable]
   int  nre,timecheck,step,nenergy2,maxenergy;
                      ^~~~
../../../src/tools/gmx_energy.c:766:8: warning: unused variable 'nre' [-Wunused-variable]
   int  nre,timecheck,step,nenergy2,maxenergy;
        ^~~
../../../src/tools/gmx_energy.c: In function 'gmx_energy':
../../../src/tools/gmx_energy.c:979:16: warning: unused variable 'nms' [-Wunused-variable]
   char       **nms;
                ^~~
../../../src/tools/gmx_energy.c:977:27: warning: unused variable 'enm2' [-Wunused-variable]
   char       **enm=NULL,**enm2=NULL,**leg=NULL,**pairleg,**odtleg,**otenleg;
                           ^~~~
../../../src/tools/gmx_energy.c:973:42: warning: unused variable 'bEDR' [-Wunused-variable]
   bool       bFoundFirst,bFoundOld,bCont,bEDR,bVisco;
                                          ^~~~
../../../src/tools/gmx_energy.c:959:23: warning: unused variable 'ee' [-Wunused-variable]
   t_energy   *oldee,**ee;
                       ^~
../../../src/tools/gmx_energy.c:953:16: warning: unused variable 'drout' [-Wunused-variable]
   FILE       **drout;
                ^~~~~
At top level:
../../../src/tools/gmx_energy.c:118:12: warning: 'strcount' defined but not used [-Wunused-function]
 static int strcount(char *s1,char *s2)
            ^~~~~~~~
In file included from ../../../src/tools/gmx_energy.c:52:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_energy.c:50:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_energy.c:46:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_energy.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_sdf.lo ../../../src/tools/gmx_sdf.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_sdf.c  -fPIC -DPIC -o .libs/gmx_sdf.o
../../../src/tools/gmx_sdf.c: In function 'do_sdf':
../../../src/tools/gmx_sdf.c:101:25: warning: unused variable 'bRefDone' [-Wunused-variable]
   bool       bTop=FALSE,bRefDone=FALSE,bInGroup=FALSE;
                         ^~~~~~~~
../../../src/tools/gmx_sdf.c:97:17: warning: unused variable 'jx' [-Wunused-variable]
   atom_id    ix,jx;
                 ^~
../../../src/tools/gmx_sdf.c:97:14: warning: unused variable 'ix' [-Wunused-variable]
   atom_id    ix,jx;
              ^~
../../../src/tools/gmx_sdf.c:92:17: warning: unused variable 'xcog' [-Wunused-variable]
   rvec       *x,xcog,dx,*x_i1,xi,*x_refmol;
                 ^~~~
../../../src/tools/gmx_sdf.c:89:23: warning: variable 'hbox' set but not used [-Wunused-but-set-variable]
   real       t,boxmin,hbox,normfac;
                       ^~~~
../../../src/tools/gmx_sdf.c:88:15: warning: unused variable 'index_ref' [-Wunused-variable]
   atom_id    *index_ref=NULL;
               ^~~~~~~~~
../../../src/tools/gmx_sdf.c:87:15: warning: unused variable 'index_cg' [-Wunused-variable]
   atom_id    *index_cg=NULL;
               ^~~~~~~~
../../../src/tools/gmx_sdf.c:85:24: warning: unused variable 'refc' [-Wunused-variable]
   int        nrefmol=0,refc=0;
                        ^~~~
../../../src/tools/gmx_sdf.c:83:14: warning: unused variable 'isize_ref' [-Wunused-variable]
   int        isize_ref=3;
              ^~~~~~~~~
../../../src/tools/gmx_sdf.c:82:14: warning: unused variable 'isize_cg' [-Wunused-variable]
   int        isize_cg=0;
              ^~~~~~~~
../../../src/tools/gmx_sdf.c:75:41: warning: unused variable 'dest' [-Wunused-variable]
   int        ng,natoms,i,j,k,l,X,Y,Z,lc,dest;
                                         ^~~~
../../../src/tools/gmx_sdf.c:75:38: warning: unused variable 'lc' [-Wunused-variable]
   int        ng,natoms,i,j,k,l,X,Y,Z,lc,dest;
                                      ^~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_sdf.c:33:
At top level:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_sdf.c:31:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_sdf.c:28:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_sdf.c:28:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
../../../src/tools/gmx_sdf.c:20:14: warning: 'SRCID_template_c' defined but not used [-Wunused-variable]
 static char *SRCID_template_c = "$Id$";
              ^~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_spol.lo ../../../src/tools/gmx_spol.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_spol.c  -fPIC -DPIC -o .libs/gmx_spol.o
../../../src/tools/gmx_spol.c: In function 'gmx_spol':
../../../src/tools/gmx_spol.c:165:28: warning: unused variable 'bPBC' [-Wunused-variable]
   static bool bCom = FALSE,bPBC = FALSE;
                            ^~~~
../../../src/tools/gmx_spol.c:131:13: warning: unused variable 'xtop' [-Wunused-variable]
   rvec     *xtop,*x,xref,try,dx,dip,dir;
             ^~~~
../../../src/tools/gmx_spol.c:127:12: warning: unused variable 'title' [-Wunused-variable]
   char     title[STRLEN];
            ^~~~~
At top level:
../../../src/tools/gmx_spol.c:165:28: warning: 'bPBC' defined but not used [-Wunused-variable]
   static bool bCom = FALSE,bPBC = FALSE;
                            ^~~~
In file included from ../../../src/tools/gmx_spol.c:45:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_spol.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_spol.c:43:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_spol.c:41:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_rdf.lo ../../../src/tools/gmx_rdf.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_rdf.c  -fPIC -DPIC -o .libs/gmx_rdf.o
../../../src/tools/gmx_rdf.c: In function 'do_rdf':
../../../src/tools/gmx_rdf.c:168:23: warning: unused variable 'index_cm' [-Wunused-variable]
   atom_id    **index,*index_cm=NULL;
                       ^~~~~~~~
../../../src/tools/gmx_rdf.c:167:21: warning: unused variable 'isize_cm' [-Wunused-variable]
   int        *isize,isize_cm=0,nrdf=0,max_i,isize0,isize_g;
                     ^~~~~~~~
../../../src/tools/gmx_rdf.c:164:40: warning: unused variable 'n' [-Wunused-variable]
   int        g,natoms,i,j,k,nbin,j0,j1,n,nframes;
                                        ^
../../../src/tools/gmx_rdf.c:164:37: warning: unused variable 'j1' [-Wunused-variable]
   int        g,natoms,i,j,k,nbin,j0,j1,n,nframes;
                                     ^~
../../../src/tools/gmx_rdf.c:164:34: warning: unused variable 'j0' [-Wunused-variable]
   int        g,natoms,i,j,k,nbin,j0,j1,n,nframes;
                                  ^~
../../../src/tools/gmx_rdf.c:162:28: warning: unused variable 'outf2' [-Wunused-variable]
   char       outf1[STRLEN],outf2[STRLEN];
                            ^~~~~
../../../src/tools/gmx_rdf.c:162:14: warning: unused variable 'outf1' [-Wunused-variable]
   char       outf1[STRLEN],outf2[STRLEN];
              ^~~~~
In file included from ../../../include/fftgrid.h:46,
                 from ../../../src/tools/gmx_rdf.c:57:
At top level:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_rdf.c:52:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_rdf.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_rdf.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_rdf.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_rmsdist.lo ../../../src/tools/gmx_rmsdist.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_rmsdist.c  -fPIC -DPIC -o .libs/gmx_rmsdist.o
../../../src/tools/gmx_rmsdist.c: In function 'analyze_noe_equivalent':
../../../src/tools/gmx_rmsdist.c:249:11: warning: unused variable 'fp' [-Wunused-variable]
   FILE   *fp;
           ^~
../../../src/tools/gmx_rmsdist.c: In function 'gmx_rmsdist':
../../../src/tools/gmx_rmsdist.c:534:36: warning: unused variable 'gj' [-Wunused-variable]
   int          natom,i,j,teller,gi,gj;
                                    ^~
../../../src/tools/gmx_rmsdist.c:534:33: warning: unused variable 'gi' [-Wunused-variable]
   int          natom,i,j,teller,gi,gj;
                                 ^~
../../../src/tools/gmx_rmsdist.c:534:24: warning: unused variable 'j' [-Wunused-variable]
   int          natom,i,j,teller,gi,gj;
                        ^
In file included from ../../../src/tools/gmx_rmsdist.c:52:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_rmsdist.c:52:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_rmsdist.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_rmsdist.c:47:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_sorient.lo ../../../src/tools/gmx_sorient.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_sorient.c  -fPIC -DPIC -o .libs/gmx_sorient.o
../../../src/tools/gmx_sorient.c: In function 'gmx_sorient':
../../../src/tools/gmx_sorient.c:114:72: warning: unused variable 'mtot' [-Wunused-variable]
   real    inp,outp,two_pi,nav,normfac,rmin2,rmax2,rcut,rcut2,r2,r,mass,mtot;
                                                                        ^~~~
../../../src/tools/gmx_sorient.c:114:67: warning: unused variable 'mass' [-Wunused-variable]
   real    inp,outp,two_pi,nav,normfac,rmin2,rmax2,rcut,rcut2,r2,r,mass,mtot;
                                                                   ^~~~
../../../src/tools/gmx_sorient.c:114:20: warning: variable 'two_pi' set but not used [-Wunused-but-set-variable]
   real    inp,outp,two_pi,nav,normfac,rmin2,rmax2,rcut,rcut2,r2,r,mass,mtot;
                    ^~~~~~
../../../src/tools/gmx_sorient.c:108:13: warning: unused variable 'j' [-Wunused-variable]
   int     i,j,p,sa0,sa1,sa2,n,ntot,nf,m,*hist1,*hist2,*histn,nbin1,nbin2,nrbin;
             ^
In file included from ../../../src/tools/gmx_sorient.c:45:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_sorient.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_sorient.c:43:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_sorient.c:41:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_velacc.lo ../../../src/tools/gmx_velacc.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_velacc.c  -fPIC -DPIC -o .libs/gmx_velacc.o
In file included from ../../../src/tools/gmx_velacc.c:57:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/tools/gmx_velacc.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/gmx_velacc.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_velacc.c:43:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_tcaf.lo ../../../src/tools/gmx_tcaf.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_tcaf.c  -fPIC -DPIC -o .libs/gmx_tcaf.o
../../../src/tools/gmx_tcaf.c: In function 'gmx_tcaf':
../../../src/tools/gmx_tcaf.c:274:16: warning: unused variable 'c1' [-Wunused-variable]
   real       **c1,**tc;
                ^~
../../../src/tools/gmx_tcaf.c:265:14: warning: unused variable 'bTPS' [-Wunused-variable]
   bool       bTPS,bTop; /* ,bCubic; */
              ^~~~
In file included from ../../../src/tools/gmx_tcaf.c:57:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/tools/gmx_tcaf.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/gmx_tcaf.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_tcaf.c:43:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o correl.lo ../../../src/tools/correl.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/correl.c  -fPIC -DPIC -o .libs/correl.o
../../../src/tools/correl.c: In function 'complex_mult':
../../../src/tools/correl.c:189:10: warning: unused variable 'no2' [-Wunused-variable]
   int  i,no2,n_2,k;
          ^~~
In file included from ../../../include/gmx_fft.h:41,
                 from ../../../src/tools/correl.c:43:
At top level:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_mdmat.lo ../../../src/tools/gmx_mdmat.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_mdmat.c  -fPIC -DPIC -o .libs/gmx_mdmat.o
../../../src/tools/gmx_mdmat.c: In function 'gmx_mdmat':
../../../src/tools/gmx_mdmat.c:193:14: warning: unused variable 'nr0' [-Wunused-variable]
   int        nr0;
              ^~~
../../../src/tools/gmx_mdmat.c:192:45: warning: unused variable 'it' [-Wunused-variable]
   int        i,j,status,nres,natoms,nframes,it,trxnat;
                                             ^~
../../../src/tools/gmx_mdmat.c:165:15: warning: unused variable 'bAtom' [-Wunused-variable]
   static bool bAtom=FALSE;
               ^~~~~
At top level:
../../../src/tools/gmx_mdmat.c:165:15: warning: 'bAtom' defined but not used [-Wunused-variable]
In file included from ../../../src/tools/gmx_mdmat.c:49:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_mdmat.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_mdmat.c:44:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_mdmat.c:44:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_nmtraj.lo ../../../src/tools/gmx_nmtraj.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_nmtraj.c  -fPIC -DPIC -o .libs/gmx_nmtraj.o
../../../src/tools/gmx_nmtraj.c: In function 'gmx_nmtraj':
../../../src/tools/gmx_nmtraj.c:129:14: warning: variable 'dum' set but not used [-Wunused-but-set-variable]
   real       dum;
              ^~~
../../../src/tools/gmx_nmtraj.c:124:14: warning: unused variable 'found' [-Wunused-variable]
   bool       found;
              ^~~~~
../../../src/tools/gmx_nmtraj.c:123:25: warning: unused variable 'sum' [-Wunused-variable]
   real       omega,Ekin,sum,m,vel;
                         ^~~
../../../src/tools/gmx_nmtraj.c:121:15: warning: unused variable 'out_eigval' [-Wunused-variable]
   real       *out_eigval;
               ^~~~~~~~~~
../../../src/tools/gmx_nmtraj.c:115:14: warning: unused variable 'neigval' [-Wunused-variable]
   int        neigval;
              ^~~~~~~
../../../src/tools/gmx_nmtraj.c:113:14: warning: unused variable 'grpname' [-Wunused-variable]
   char *     grpname;
              ^~~~~~~
../../../src/tools/gmx_nmtraj.c:111:14: warning: unused variable 'indexfile' [-Wunused-variable]
   char *     indexfile;
              ^~~~~~~~~
../../../src/tools/gmx_nmtraj.c:109:30: warning: unused variable 'v' [-Wunused-variable]
   int        i,j,k,kmode,d,s,v;
                              ^
../../../src/tools/gmx_nmtraj.c:109:28: warning: unused variable 's' [-Wunused-variable]
   int        i,j,k,kmode,d,s,v;
                            ^
../../../src/tools/gmx_nmtraj.c:105:15: warning: unused variable 'eigvalnr' [-Wunused-variable]
   int        *eigvalnr;
               ^~~~~~~~
In file included from ../../../src/tools/gmx_nmtraj.c:54:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/tools/gmx_nmtraj.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_nmtraj.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_nmtraj.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_nmtraj.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_helixorient.lo ../../../src/tools/gmx_helixorient.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_helixorient.c  -fPIC -DPIC -o .libs/gmx_helixorient.o
../../../src/tools/gmx_helixorient.c: In function 'gmx_helixorient':
../../../src/tools/gmx_helixorient.c:125:14: warning: unused variable 'rotangle' [-Wunused-variable]
     real tmp,rotangle;
              ^~~~~~~~
../../../src/tools/gmx_helixorient.c:107:10: warning: unused variable 'axes' [-Wunused-variable]
     rvec axes[3];
          ^~~~
../../../src/tools/gmx_helixorient.c:106:10: warning: unused variable 'axes_t0' [-Wunused-variable]
     rvec axes_t0[3];
          ^~~~~~~
../../../src/tools/gmx_helixorient.c:93:27: warning: unused variable 'vproj' [-Wunused-variable]
     rvec v1,v2,p1,p2,vtmp,vproj;
                           ^~~~~
../../../src/tools/gmx_helixorient.c:93:22: warning: unused variable 'vtmp' [-Wunused-variable]
     rvec v1,v2,p1,p2,vtmp,vproj;
                      ^~~~
../../../src/tools/gmx_helixorient.c:93:19: warning: unused variable 'p2' [-Wunused-variable]
     rvec v1,v2,p1,p2,vtmp,vproj;
                   ^~
../../../src/tools/gmx_helixorient.c:93:16: warning: unused variable 'p1' [-Wunused-variable]
     rvec v1,v2,p1,p2,vtmp,vproj;
                ^~
../../../src/tools/gmx_helixorient.c:92:10: warning: unused variable 'averageaxis' [-Wunused-variable]
     rvec averageaxis;
          ^~~~~~~~~~~
../../../src/tools/gmx_helixorient.c:86:9: warning: unused variable 'd' [-Wunused-variable]
     int d,i,j,teller=0;
         ^
../../../src/tools/gmx_helixorient.c:80:18: warning: unused variable 'dx' [-Wunused-variable]
     rvec *x=NULL,dx;
                  ^~
In file included from ../../../src/tools/gmx_helixorient.c:48:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_helixorient.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_helixorient.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_helixorient.c:45:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_clustsize.lo ../../../src/tools/gmx_clustsize.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_clustsize.c  -fPIC -DPIC -o .libs/gmx_clustsize.o
../../../src/tools/gmx_clustsize.c: In function 'clust_size':
../../../src/tools/gmx_clustsize.c:94:50: warning: unused variable 'n_y' [-Wunused-variable]
   int     i,j,k,ai,aj,ak,ci,cj,nframe,nclust,n_x,n_y,max_size=0;
                                                  ^~~
../../../src/tools/gmx_clustsize.c:94:23: warning: unused variable 'ak' [-Wunused-variable]
   int     i,j,k,ai,aj,ak,ci,cj,nframe,nclust,n_x,n_y,max_size=0;
                       ^~
../../../src/tools/gmx_clustsize.c:89:40: warning: unused variable 'nsame' [-Wunused-variable]
   int     version,generation,sss,ii,jj,nsame;
                                        ^~~~~
../../../src/tools/gmx_clustsize.c: In function 'gmx_clustsize':
../../../src/tools/gmx_clustsize.c:396:18: warning: unused variable 'bRDF' [-Wunused-variable]
   bool       bSQ,bRDF;
                  ^~~~
../../../src/tools/gmx_clustsize.c:396:14: warning: unused variable 'bSQ' [-Wunused-variable]
   bool       bSQ,bRDF;
              ^~~
In file included from ../../../include/pme.h:46,
                 from ../../../src/tools/gmx_clustsize.c:62:
At top level:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/tools/gmx_clustsize.c:52:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_clustsize.c:50:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_clustsize.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_clustsize.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_traj.lo ../../../src/tools/gmx_traj.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_traj.c  -fPIC -DPIC -o .libs/gmx_traj.o
../../../src/tools/gmx_traj.c: In function 'write_pdb_bfac':
../../../src/tools/gmx_traj.c:337:11: warning: unused variable 'bOne' [-Wunused-variable]
   bool    bOne;
           ^~~~
../../../src/tools/gmx_traj.c: In function 'gmx_traj':
../../../src/tools/gmx_traj.c:525:18: warning: unused variable 'n' [-Wunused-variable]
   int        i,j,n;
                  ^
In file included from ../../../src/tools/gmx_traj.c:49:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_traj.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_traj.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_traj.c:42:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_hbond.lo ../../../src/tools/gmx_hbond.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_hbond.c  -fPIC -DPIC -o .libs/gmx_hbond.o
../../../src/tools/gmx_hbond.c: In function 'mk_hbmap':
../../../src/tools/gmx_hbond.c:182:10: warning: unused variable 'j' [-Wunused-variable]
   int  i,j;
          ^
../../../src/tools/gmx_hbond.c: In function 'add_frames':
../../../src/tools/gmx_hbond.c:194:14: warning: unused variable 'l' [-Wunused-variable]
   int  i,j,k,l;
              ^
../../../src/tools/gmx_hbond.c:194:12: warning: unused variable 'k' [-Wunused-variable]
   int  i,j,k,l;
            ^
../../../src/tools/gmx_hbond.c:194:10: warning: unused variable 'j' [-Wunused-variable]
   int  i,j,k,l;
          ^
../../../src/tools/gmx_hbond.c:194:8: warning: unused variable 'i' [-Wunused-variable]
   int  i,j,k,l;
        ^
../../../src/tools/gmx_hbond.c: In function 'search_donors':
../../../src/tools/gmx_hbond.c:543:14: warning: unused variable 'stop' [-Wunused-variable]
   bool       stop;
              ^~~~
../../../src/tools/gmx_hbond.c:539:22: warning: unused variable 'n' [-Wunused-variable]
   int        i,j,nra,n;
                      ^
../../../src/tools/gmx_hbond.c:539:18: warning: unused variable 'nra' [-Wunused-variable]
   int        i,j,nra,n;
                  ^~~
../../../src/tools/gmx_hbond.c: In function 'is_hbond':
../../../src/tools/gmx_hbond.c:900:19: warning: unused variable 'ihb' [-Wunused-variable]
   int  h,hh,id,ja,ihb;
                   ^~~
../../../src/tools/gmx_hbond.c: In function 'merge_hb':
../../../src/tools/gmx_hbond.c:1021:44: warning: unused variable 'ogrp' [-Wunused-variable]
   int  i,inrnew,indnew,j,ii,jj,m,id,ia,grp,ogrp,ntmp;
                                            ^~~~
../../../src/tools/gmx_hbond.c:1021:40: warning: unused variable 'grp' [-Wunused-variable]
   int  i,inrnew,indnew,j,ii,jj,m,id,ia,grp,ogrp,ntmp;
                                        ^~~
../../../src/tools/gmx_hbond.c:1021:32: warning: unused variable 'm' [-Wunused-variable]
   int  i,inrnew,indnew,j,ii,jj,m,id,ia,grp,ogrp,ntmp;
                                ^
../../../src/tools/gmx_hbond.c: In function 'do_nhb_dist':
../../../src/tools/gmx_hbond.c:1077:8: warning: unused variable 'nhb' [-Wunused-variable]
   h_id nhb;
        ^~~
../../../src/tools/gmx_hbond.c: In function 'smooth_tail':
../../../src/tools/gmx_hbond.c:1439:9: warning: unused variable 'fp' [-Wunused-variable]
   FILE *fp;
         ^~
../../../src/tools/gmx_hbond.c: In function 'analyse_corr':
../../../src/tools/gmx_hbond.c:1461:56: warning: unused variable 'dt' [-Wunused-variable]
   real   Q=0,chi22,chi2,dg,dgp,tau_hb,dtau,tau_rlx,e_1,dt,sigma_k,sigma_kp,ddg;
                                                        ^~
../../../src/tools/gmx_hbond.c:1461:28: warning: unused variable 'dgp' [-Wunused-variable]
   real   Q=0,chi22,chi2,dg,dgp,tau_hb,dtau,tau_rlx,e_1,dt,sigma_k,sigma_kp,ddg;
                            ^~~
../../../src/tools/gmx_hbond.c:1461:25: warning: unused variable 'dg' [-Wunused-variable]
   real   Q=0,chi22,chi2,dg,dgp,tau_hb,dtau,tau_rlx,e_1,dt,sigma_k,sigma_kp,ddg;
                         ^~
../../../src/tools/gmx_hbond.c:1461:14: warning: variable 'chi22' set but not used [-Wunused-but-set-variable]
   real   Q=0,chi22,chi2,dg,dgp,tau_hb,dtau,tau_rlx,e_1,dt,sigma_k,sigma_kp,ddg;
              ^~~~~
../../../src/tools/gmx_hbond.c: In function 'do_hbac':
../../../src/tools/gmx_hbond.c:1585:27: warning: variable 'ngh' set but not used [-Wunused-but-set-variable]
   int   nh,nhbonds,nhydro,ngh;
                           ^~~
../../../src/tools/gmx_hbond.c:1577:18: warning: unused variable 'nd' [-Wunused-variable]
   int  i,j,k,m,n,nd,ihb,idist,n2,nn;
                  ^~
../../../src/tools/gmx_hbond.c:1577:16: warning: unused variable 'n' [-Wunused-variable]
   int  i,j,k,m,n,nd,ihb,idist,n2,nn;
                ^
../../../src/tools/gmx_hbond.c: In function 'gmx_hbond':
../../../src/tools/gmx_hbond.c:2051:30: warning: unused variable 'bin' [-Wunused-variable]
   int        grp,nabin,nrbin,bin,resdist,ihb;
                              ^~~
../../../src/tools/gmx_hbond.c:2049:43: warning: unused variable 'was' [-Wunused-variable]
   bool    bSelected,bHBmap,bStop,bTwo,new,was,bBox,bTric;
                                           ^~~
../../../src/tools/gmx_hbond.c:2049:39: warning: unused variable 'new' [-Wunused-variable]
   bool    bSelected,bHBmap,bStop,bTwo,new,was,bBox,bTric;
                                       ^~~
../../../src/tools/gmx_hbond.c:2045:34: warning: unused variable 'ja' [-Wunused-variable]
   int     h,i,j,k,l,start,end,id,ja,ogrp,nsel;
                                  ^~
../../../src/tools/gmx_hbond.c:2045:31: warning: unused variable 'id' [-Wunused-variable]
   int     h,i,j,k,l,start,end,id,ja,ogrp,nsel;
                               ^~
../../../src/tools/gmx_hbond.c:2045:27: warning: unused variable 'end' [-Wunused-variable]
   int     h,i,j,k,l,start,end,id,ja,ogrp,nsel;
                           ^~~
../../../src/tools/gmx_hbond.c:2045:21: warning: unused variable 'start' [-Wunused-variable]
   int     h,i,j,k,l,start,end,id,ja,ogrp,nsel;
                     ^~~~~
../../../src/tools/gmx_hbond.c:2045:19: warning: unused variable 'l' [-Wunused-variable]
   int     h,i,j,k,l,start,end,id,ja,ogrp,nsel;
                   ^
At top level:
../../../src/tools/gmx_hbond.c:372:13: warning: 'in_list' defined but not used [-Wunused-function]
 static bool in_list(atom_id selection,int isize,atom_id *index)
             ^~~~~~~
In file included from ../../../include/gmx_fft.h:41,
                 from ../../../src/tools/correl.h:40,
                 from ../../../src/tools/gmx_hbond.c:59:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/tools/gmx_hbond.c:53:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_hbond.c:53:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_hbond.c:43:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_hbond.c:42:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_wham.lo ../../../src/tools/gmx_wham.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_wham.c  -fPIC -DPIC -o .libs/gmx_wham.o
In file included from ../../../src/tools/gmx_wham.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_wham.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_wham.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_wham.c:44:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
../../../src/tools/gmx_wham.c: In function 'open_pdo_pipe':
../../../src/tools/gmx_wham.c:1201:27: warning: ' -c < ' directive writing 6 bytes into a region of size between 1 and 1024 [-Wformat-overflow=]
         sprintf(Buffer,"%s -c < %s",gunzip,fn);
                           ^~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../src/tools/gmx_wham.c:37:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 7 or more bytes (assuming 1030) into a destination of size 1024
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_sham.lo ../../../src/tools/gmx_sham.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_sham.c  -fPIC -DPIC -o .libs/gmx_sham.o
../../../src/tools/gmx_sham.c: In function 'do_sham':
../../../src/tools/gmx_sham.c:286:32: warning: unused variable 'd' [-Wunused-variable]
   int     i,j,k,imin,len,index,d,*nbin,*bindex,bi;
                                ^
../../../src/tools/gmx_sham.c: In function 'gmx_sham':
../../../src/tools/gmx_sham.c:778:41: warning: unused variable 'db' [-Wunused-variable]
   double   *av,*sig,cum1,cum2,cum3,cum4,db;
                                         ^~
../../../src/tools/gmx_sham.c:778:36: warning: unused variable 'cum4' [-Wunused-variable]
   double   *av,*sig,cum1,cum2,cum3,cum4,db;
                                    ^~~~
../../../src/tools/gmx_sham.c:778:31: warning: unused variable 'cum3' [-Wunused-variable]
   double   *av,*sig,cum1,cum2,cum3,cum4,db;
                               ^~~~
../../../src/tools/gmx_sham.c:778:26: warning: unused variable 'cum2' [-Wunused-variable]
   double   *av,*sig,cum1,cum2,cum3,cum4,db;
                          ^~~~
../../../src/tools/gmx_sham.c:778:21: warning: unused variable 'cum1' [-Wunused-variable]
   double   *av,*sig,cum1,cum2,cum3,cum4,db;
                     ^~~~
../../../src/tools/gmx_sham.c:778:17: warning: unused variable 'sig' [-Wunused-variable]
   double   *av,*sig,cum1,cum2,cum3,cum4,db;
                 ^~~
../../../src/tools/gmx_sham.c:778:13: warning: unused variable 'av' [-Wunused-variable]
   double   *av,*sig,cum1,cum2,cum3,cum4,db;
             ^~
../../../src/tools/gmx_sham.c:776:66: warning: unused variable 'error' [-Wunused-variable]
   real     **val,**et_val,**dt_val,*t,*e_t,e_dt,d_dt,*d_t,dt,tot,error;
                                                                  ^~~~~
../../../src/tools/gmx_sham.c:776:62: warning: unused variable 'tot' [-Wunused-variable]
   real     **val,**et_val,**dt_val,*t,*e_t,e_dt,d_dt,*d_t,dt,tot,error;
                                                              ^~~
../../../src/tools/gmx_sham.c:775:51: warning: unused variable 'j' [-Wunused-variable]
   int      n,e_n,d_n,nlast,s,nset,e_nset,d_nset,i,j=0,*idim,*ibox;
                                                   ^
../../../src/tools/gmx_sham.c:775:28: warning: unused variable 's' [-Wunused-variable]
   int      n,e_n,d_n,nlast,s,nset,e_nset,d_nset,i,j=0,*idim,*ibox;
                            ^
../../../src/tools/gmx_sham.c:775:22: warning: unused variable 'nlast' [-Wunused-variable]
   int      n,e_n,d_n,nlast,s,nset,e_nset,d_nset,i,j=0,*idim,*ibox;
                      ^~~~~
../../../src/tools/gmx_sham.c:774:13: warning: unused variable 'out' [-Wunused-variable]
   FILE     *out;
             ^~~
../../../src/tools/gmx_sham.c:728:35: warning: unused variable 'resol' [-Wunused-variable]
   static int  nsets_in=1,nb_min=4,resol=10,nlevels=25;
                                   ^~~~~
../../../src/tools/gmx_sham.c:728:26: warning: unused variable 'nb_min' [-Wunused-variable]
   static int  nsets_in=1,nb_min=4,resol=10,nlevels=25;
                          ^~~~~~
../../../src/tools/gmx_sham.c:723:15: warning: unused variable 'bShamEner' [-Wunused-variable]
   static bool bShamEner=TRUE,bSham=TRUE;
               ^~~~~~~~~
../../../src/tools/gmx_sham.c:722:56: warning: unused variable 'bPower' [-Wunused-variable]
   static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE;
                                                        ^~~~~~
../../../src/tools/gmx_sham.c:722:41: warning: unused variable 'bEeFitAc' [-Wunused-variable]
   static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE;
                                         ^~~~~~~~
../../../src/tools/gmx_sham.c:722:28: warning: unused variable 'bEENLC' [-Wunused-variable]
   static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE;
                            ^~~~~~
../../../src/tools/gmx_sham.c:722:15: warning: unused variable 'bEESEF' [-Wunused-variable]
   static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE;
               ^~~~~~
../../../src/tools/gmx_sham.c:721:66: warning: unused variable 'bXYdy' [-Wunused-variable]
   static bool bHaveT=TRUE,bDer=FALSE,bSubAv=TRUE,bAverCorr=FALSE,bXYdy=FALSE;
                                                                  ^~~~~
../../../src/tools/gmx_sham.c:721:50: warning: unused variable 'bAverCorr' [-Wunused-variable]
   static bool bHaveT=TRUE,bDer=FALSE,bSubAv=TRUE,bAverCorr=FALSE,bXYdy=FALSE;
                                                  ^~~~~~~~~
../../../src/tools/gmx_sham.c:721:38: warning: unused variable 'bSubAv' [-Wunused-variable]
   static bool bHaveT=TRUE,bDer=FALSE,bSubAv=TRUE,bAverCorr=FALSE,bXYdy=FALSE;
                                      ^~~~~~
../../../src/tools/gmx_sham.c:720:36: warning: unused variable 'filtlen' [-Wunused-variable]
   static real tb=-1,te=-1,frac=0.5,filtlen=0,binwidth=0.1;
                                    ^~~~~~~
../../../src/tools/gmx_sham.c:720:27: warning: unused variable 'frac' [-Wunused-variable]
   static real tb=-1,te=-1,frac=0.5,filtlen=0,binwidth=0.1;
                           ^~~~
At top level:
../../../src/tools/gmx_sham.c:720:27: warning: 'frac' defined but not used [-Wunused-variable]
../../../src/tools/gmx_sham.c:720:36: warning: 'filtlen' defined but not used [-Wunused-variable]
   static real tb=-1,te=-1,frac=0.5,filtlen=0,binwidth=0.1;
                                    ^~~~~~~
../../../src/tools/gmx_sham.c:721:38: warning: 'bSubAv' defined but not used [-Wunused-variable]
   static bool bHaveT=TRUE,bDer=FALSE,bSubAv=TRUE,bAverCorr=FALSE,bXYdy=FALSE;
                                      ^~~~~~
../../../src/tools/gmx_sham.c:721:50: warning: 'bAverCorr' defined but not used [-Wunused-variable]
   static bool bHaveT=TRUE,bDer=FALSE,bSubAv=TRUE,bAverCorr=FALSE,bXYdy=FALSE;
                                                  ^~~~~~~~~
../../../src/tools/gmx_sham.c:721:66: warning: 'bXYdy' defined but not used [-Wunused-variable]
   static bool bHaveT=TRUE,bDer=FALSE,bSubAv=TRUE,bAverCorr=FALSE,bXYdy=FALSE;
                                                                  ^~~~~
../../../src/tools/gmx_sham.c:722:15: warning: 'bEESEF' defined but not used [-Wunused-variable]
   static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE;
               ^~~~~~
../../../src/tools/gmx_sham.c:722:28: warning: 'bEENLC' defined but not used [-Wunused-variable]
   static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE;
                            ^~~~~~
../../../src/tools/gmx_sham.c:722:41: warning: 'bEeFitAc' defined but not used [-Wunused-variable]
   static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE;
                                         ^~~~~~~~
../../../src/tools/gmx_sham.c:722:56: warning: 'bPower' defined but not used [-Wunused-variable]
   static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE;
                                                        ^~~~~~
../../../src/tools/gmx_sham.c:723:15: warning: 'bShamEner' defined but not used [-Wunused-variable]
   static bool bShamEner=TRUE,bSham=TRUE;
               ^~~~~~~~~
../../../src/tools/gmx_sham.c:728:26: warning: 'nb_min' defined but not used [-Wunused-variable]
   static int  nsets_in=1,nb_min=4,resol=10,nlevels=25;
                          ^~~~~~
../../../src/tools/gmx_sham.c:728:35: warning: 'resol' defined but not used [-Wunused-variable]
   static int  nsets_in=1,nb_min=4,resol=10,nlevels=25;
                                   ^~~~~
In file included from ../../../src/tools/gmx_sham.c:56:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/tools/gmx_sham.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_sham.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_sham.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_sham.c:41:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_genion.lo ../../../src/tools/gmx_genion.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_genion.c  -fPIC -DPIC -o .libs/gmx_genion.o
../../../src/tools/gmx_genion.c: In function 'insert_ion':
../../../src/tools/gmx_genion.c:72:8: warning: unused variable 'xei' [-Wunused-variable]
   rvec xei,dx;
        ^~~
../../../src/tools/gmx_genion.c:70:29: warning: unused variable 'm' [-Wunused-variable]
   int  i,ii,ei,owater,wlast,m,nw;
                             ^
../../../src/tools/gmx_genion.c:70:23: warning: unused variable 'wlast' [-Wunused-variable]
   int  i,ii,ei,owater,wlast,m,nw;
                       ^~~~~
../../../src/tools/gmx_genion.c:70:16: warning: unused variable 'owater' [-Wunused-variable]
   int  i,ii,ei,owater,wlast,m,nw;
                ^~~~~~
In file included from ../../../src/tools/gmx_genion.c:54:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/tools/gmx_genion.c:51:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_genion.c:48:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_genion.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_genion.c:41:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_genbox.lo ../../../src/tools/gmx_genbox.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_genbox.c  -fPIC -DPIC -o .libs/gmx_genbox.o
../../../src/tools/gmx_genbox.c: In function 'gmx_genbox':
../../../src/tools/gmx_genbox.c:665:11: warning: unused variable 'pbc' [-Wunused-variable]
   t_pbc   pbc;
           ^~~
In file included from ../../../src/tools/gmx_genbox.c:61:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_genbox.c:57:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_genbox.c:55:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_genbox.c:55:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_genbox.c:47:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
../../../src/tools/gmx_genbox.c: In function 'update_top.constprop':
../../../src/tools/gmx_genbox.c:538:19: warning: ' in water
   ' directive writing 10 bytes into a region of size between 1 and 4096 [-Wformat-overflow=]
    sprintf(buf,"%s in water\n",buf2);
                   ^~~~~~~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/tools/gmx_genbox.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 11 and 4106 bytes into a destination of size 4096
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_trjorder.lo ../../../src/tools/gmx_trjorder.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_trjorder.c  -fPIC -DPIC -o .libs/gmx_trjorder.o
In file included from ../../../src/tools/gmx_trjorder.c:49:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_trjorder.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_trjorder.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_trjorder.c:42:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_genpr.lo ../../../src/tools/gmx_genpr.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_genpr.c  -fPIC -DPIC -o .libs/gmx_genpr.o
In file included from ../../../src/tools/gmx_genpr.c:50:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_genpr.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_genpr.c:44:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_genpr.c:42:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_trjcat.lo ../../../src/tools/gmx_trjcat.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_trjcat.c  -fPIC -DPIC -o .libs/gmx_trjcat.o
../../../src/tools/gmx_trjcat.c: In function 'scan_trj_files':
../../../src/tools/gmx_trjcat.c:78:8: warning: unused variable 't' [-Wunused-variable]
   real t;
        ^
../../../src/tools/gmx_trjcat.c: In function 'gmx_trjcat':
../../../src/tools/gmx_trjcat.c:392:58: warning: unused variable 'last_ok_step' [-Wunused-variable]
   int         earliersteps,nfile_in,nfile_out,*cont_type,last_ok_step;
                                                          ^~~~~~~~~~~~
../../../src/tools/gmx_trjcat.c:388:34: warning: unused variable 'in_file' [-Wunused-variable]
   char        **fnms,**fnms_out,*in_file,*out_file;
                                  ^~~~~~~
../../../src/tools/gmx_trjcat.c:385:19: warning: unused variable 'v' [-Wunused-variable]
   rvec        *x,*v;
                   ^
../../../src/tools/gmx_trjcat.c:385:16: warning: unused variable 'x' [-Wunused-variable]
   rvec        *x,*v;
                ^
../../../src/tools/gmx_trjcat.c:384:53: warning: unused variable 'trjout' [-Wunused-variable]
   int         status,ftpin,i,frame,frame_out,step=0,trjout=0;
                                                     ^~~~~~
../../../src/tools/gmx_trjcat.c:384:22: warning: unused variable 'ftpin' [-Wunused-variable]
   int         status,ftpin,i,frame,frame_out,step=0,trjout=0;
                      ^~~~~
In file included from ../../../src/tools/gmx_trjcat.c:56:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_trjcat.c:56:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_trjcat.c:52:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_trjcat.c:50:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_trjcat.c:46:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_xpm2ps.lo ../../../src/tools/gmx_xpm2ps.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_xpm2ps.c  -fPIC -DPIC -o .libs/gmx_xpm2ps.o
../../../src/tools/gmx_xpm2ps.c: In function 'xpm_mat':
../../../src/tools/gmx_xpm2ps.c:559:14: warning: unused variable 'k' [-Wunused-variable]
   int    i,j,k,x,y,col;
              ^
../../../src/tools/gmx_xpm2ps.c:559:12: warning: unused variable 'j' [-Wunused-variable]
   int    i,j,k,x,y,col;
            ^
../../../src/tools/gmx_xpm2ps.c:558:10: warning: unused variable 'buf' [-Wunused-variable]
   char   buf[100];
          ^~~
../../../src/tools/gmx_xpm2ps.c: In function 'tick_spacing':
../../../src/tools/gmx_xpm2ps.c:599:18: warning: unused variable 'bFive' [-Wunused-variable]
   bool bTryAgain,bFive;
                  ^~~~~
../../../src/tools/gmx_xpm2ps.c: In function 'ps_mat':
../../../src/tools/gmx_xpm2ps.c:644:12: warning: unused variable 'j' [-Wunused-variable]
   int    i,j,x,y,col,leg=0;
            ^
../../../src/tools/gmx_xpm2ps.c: In function 'write_combined_matrix':
../../../src/tools/gmx_xpm2ps.c:919:14: warning: unused variable 'map' [-Wunused-variable]
   t_mapping *map=NULL;
              ^~~
../../../src/tools/gmx_xpm2ps.c: In function 'gmx_xpm2ps':
../../../src/tools/gmx_xpm2ps.c:1127:56: warning: unused variable 'bAdd' [-Wunused-variable]
   static bool bFrame=TRUE,bZeroLine=FALSE,bYonce=FALSE,bAdd=FALSE;
                                                        ^~~~
At top level:
../../../src/tools/gmx_xpm2ps.c:1127:56: warning: 'bAdd' defined but not used [-Wunused-variable]
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_xpm2ps.c:45:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_xpm2ps.c:42:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
../../../src/tools/gmx_xpm2ps.c: In function 'ps_mat':
../../../src/tools/gmx_xpm2ps.c:346:22: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=]
       sprintf(buf,"%g",mat[i].axis_x[j]);
                      ^
In file included from /usr/include/stdio.h:862,
                 from ../../../include/string2.h:56,
                 from ../../../src/tools/gmx_xpm2ps.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 2 and 14 bytes into a destination of size 12
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/tools/gmx_xpm2ps.c:374:22: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=]
       sprintf(buf,"%g",mat[i].axis_y[j]);
                      ^
In file included from /usr/include/stdio.h:862,
                 from ../../../include/string2.h:56,
                 from ../../../src/tools/gmx_xpm2ps.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 2 and 14 bytes into a destination of size 12
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_genconf.lo ../../../src/tools/gmx_genconf.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_genconf.c  -fPIC -DPIC -o .libs/gmx_genconf.o
../../../src/tools/gmx_genconf.c:93:13: warning: 'move_x' defined but not used [-Wunused-function]
 static void move_x(int natoms,rvec x[],matrix box)
             ^~~~~~
In file included from ../../../src/tools/gmx_genconf.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_genconf.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_genconf.c:42:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_genconf.c:40:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_wheel.lo ../../../src/tools/gmx_wheel.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_wheel.c  -fPIC -DPIC -o .libs/gmx_wheel.o
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_wheel.c:55:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_wheel.c:52:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_wheel.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_wheel.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_eneconv.lo ../../../src/tools/gmx_eneconv.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_eneconv.c  -fPIC -DPIC -o .libs/gmx_eneconv.o
../../../src/tools/gmx_eneconv.c: In function 'gmx_eneconv':
../../../src/tools/gmx_eneconv.c:427:14: warning: unused variable 'ok' [-Wunused-variable]
   bool       ok;
              ^~
../../../src/tools/gmx_eneconv.c:426:35: warning: unused variable 'chptr' [-Wunused-variable]
   char       inputstring[STRLEN],*chptr;
                                   ^~~~~
../../../src/tools/gmx_eneconv.c:426:14: warning: unused variable 'inputstring' [-Wunused-variable]
   char       inputstring[STRLEN],*chptr;
              ^~~~~~~~~~~
../../../src/tools/gmx_eneconv.c:425:42: warning: unused variable 't1' [-Wunused-variable]
   real       *readtime,*settime,timestep,t1,tadjust;
                                          ^~
../../../src/tools/gmx_eneconv.c:421:42: warning: unused variable 'j' [-Wunused-variable]
   int        nre,nremax,this_nre,nfile,i,j,kkk,nset,*set=NULL;
                                          ^
At top level:
../../../src/tools/gmx_eneconv.c:101:13: warning: 'same_time' defined but not used [-Wunused-function]
 static bool same_time(real t1,real t2)
             ^~~~~~~~~
In file included from ../../../src/tools/gmx_eneconv.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_eneconv.c:45:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o editconf.o ../../../src/tools/editconf.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o genbox.o ../../../src/tools/genbox.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o eneconv.o ../../../src/tools/eneconv.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o edittop.lo ../../../src/tools/edittop.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/edittop.c  -fPIC -DPIC -o .libs/edittop.o
../../../src/tools/edittop.c: In function 'delete_from_block':
../../../src/tools/edittop.c:104:17: warning: unused variable 'k' [-Wunused-variable]
   int i,i1,j1,j,k;
                 ^
../../../src/tools/edittop.c:104:12: warning: unused variable 'j1' [-Wunused-variable]
   int i,i1,j1,j,k;
            ^~
../../../src/tools/edittop.c: In function 'delete_atom':
../../../src/tools/edittop.c:161:7: warning: unused variable 'k' [-Wunused-variable]
   int k;
       ^
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o genconf.o ../../../src/tools/genconf.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o genrestr.o ../../../src/tools/genrestr.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o calcpot.lo ../../../src/tools/calcpot.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/calcpot.c  -fPIC -DPIC -o .libs/calcpot.o
../../../src/tools/calcpot.c: In function 'c_tabpot':
../../../src/tools/calcpot.c:79:8: warning: unused variable 'qqO' [-Wunused-variable]
   real qqO,qj;
        ^~~
../../../src/tools/calcpot.c:78:43: warning: unused variable 'rinv2O' [-Wunused-variable]
   real txO,tyO,tzO,vcO,fsO,qO,rsqO,rinv1O,rinv2O;
                                           ^~~~~~
../../../src/tools/calcpot.c:78:24: warning: unused variable 'fsO' [-Wunused-variable]
   real txO,tyO,tzO,vcO,fsO,qO,rsqO,rinv1O,rinv2O;
                        ^~~
../../../src/tools/calcpot.c:78:20: warning: unused variable 'vcO' [-Wunused-variable]
   real txO,tyO,tzO,vcO,fsO,qO,rsqO,rinv1O,rinv2O;
                    ^~~
../../../src/tools/calcpot.c:78:16: warning: unused variable 'tzO' [-Wunused-variable]
   real txO,tyO,tzO,vcO,fsO,qO,rsqO,rinv1O,rinv2O;
                ^~~
../../../src/tools/calcpot.c:78:12: warning: unused variable 'tyO' [-Wunused-variable]
   real txO,tyO,tzO,vcO,fsO,qO,rsqO,rinv1O,rinv2O;
            ^~~
../../../src/tools/calcpot.c:78:8: warning: unused variable 'txO' [-Wunused-variable]
   real txO,tyO,tzO,vcO,fsO,qO,rsqO,rinv1O,rinv2O;
        ^~~
../../../src/tools/calcpot.c:76:28: warning: unused variable 'fzO' [-Wunused-variable]
   real fxJ,fyJ,fzJ,fxO,fyO,fzO;
                            ^~~
../../../src/tools/calcpot.c:76:24: warning: unused variable 'fyO' [-Wunused-variable]
   real fxJ,fyJ,fzJ,fxO,fyO,fzO;
                        ^~~
../../../src/tools/calcpot.c:76:20: warning: unused variable 'fxO' [-Wunused-variable]
   real fxJ,fyJ,fzJ,fxO,fyO,fzO;
                    ^~~
../../../src/tools/calcpot.c:76:16: warning: unused variable 'fzJ' [-Wunused-variable]
   real fxJ,fyJ,fzJ,fxO,fyO,fzO;
                ^~~
../../../src/tools/calcpot.c:76:12: warning: unused variable 'fyJ' [-Wunused-variable]
   real fxJ,fyJ,fzJ,fxO,fyO,fzO;
            ^~~
../../../src/tools/calcpot.c:76:8: warning: unused variable 'fxJ' [-Wunused-variable]
   real fxJ,fyJ,fzJ,fxO,fyO,fzO;
        ^~~
../../../src/tools/calcpot.c:75:38: warning: unused variable 'ggid' [-Wunused-variable]
   int  ii,k,n,jnr,ii3,nj0,nj1,is3,j3,ggid;
                                      ^~~~
../../../src/tools/calcpot.c:71:50: warning: unused variable 'FF' [-Wunused-variable]
   real r1,r1t,fijC,eps,eps2,Y,F,Fp,Geps,Heps2,VV,FF;
                                                  ^~
../../../src/tools/calcpot.c:71:15: warning: unused variable 'fijC' [-Wunused-variable]
   real r1,r1t,fijC,eps,eps2,Y,F,Fp,Geps,Heps2,VV,FF;
               ^~~~
../../../src/tools/calcpot.c:70:14: warning: unused variable 'two' [-Wunused-variable]
   const real two = 2.000000;
              ^~~
../../../src/tools/calcpot.c: In function 'calc_pot':
../../../src/tools/calcpot.c:176:15: warning: variable 'box_size' set but not used [-Wunused-but-set-variable]
   rvec        box_size;
               ^~~~~~~~
../../../src/tools/calcpot.c: In function 'init_calcpot':
../../../src/tools/calcpot.c:238:12: warning: variable 'box_size' set but not used [-Wunused-but-set-variable]
   rvec     box_size;
            ^~~~~~~~
In file included from ../../../src/tools/calcpot.c:46:
At top level:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/tools/calcpot.c:40:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/calcpot.c:40:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_nmtraj.o ../../../src/tools/g_nmtraj.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o trjcat.o ../../../src/tools/trjcat.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o trjconv.o ../../../src/tools/trjconv.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o trjorder.o ../../../src/tools/trjorder.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o wheel.o ../../../src/tools/wheel.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o xpm2ps.o ../../../src/tools/xpm2ps.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o genion.o ../../../src/tools/genion.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o mk_angndx.o ../../../src/tools/mk_angndx.c
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/mk_angndx.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/mk_angndx.c:42:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o addconf.lo ../../../src/tools/addconf.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/addconf.c  -fPIC -DPIC -o .libs/addconf.o
../../../src/tools/addconf.c: In function 'do_nsgrid':
../../../src/tools/addconf.c:205:14: warning: variable 'box_size' set but not used [-Wunused-but-set-variable]
   rvec       box_size;
              ^~~~~~~~
../../../src/tools/addconf.c: In function 'add_conf':
../../../src/tools/addconf.c:328:23: warning: unused variable 'xpp' [-Wunused-variable]
   rvec       dx,xi,xj,xpp,*x_all,*v_all;
                       ^~~
../../../src/tools/addconf.c:326:34: warning: unused variable 'dz1' [-Wunused-variable]
   int        dx0,dx1,dy0,dy1,dz0,dz1;
                                  ^~~
../../../src/tools/addconf.c:326:30: warning: unused variable 'dz0' [-Wunused-variable]
   int        dx0,dx1,dy0,dy1,dz0,dz1;
                              ^~~
../../../src/tools/addconf.c:326:26: warning: unused variable 'dy1' [-Wunused-variable]
   int        dx0,dx1,dy0,dy1,dz0,dz1;
                          ^~~
../../../src/tools/addconf.c:326:22: warning: unused variable 'dy0' [-Wunused-variable]
   int        dx0,dx1,dy0,dy1,dz0,dz1;
                      ^~~
../../../src/tools/addconf.c:326:18: warning: unused variable 'dx1' [-Wunused-variable]
   int        dx0,dx1,dy0,dy1,dz0,dz1;
                  ^~~
../../../src/tools/addconf.c:326:14: warning: unused variable 'dx0' [-Wunused-variable]
   int        dx0,dx1,dy0,dy1,dz0,dz1;
              ^~~
../../../src/tools/addconf.c:325:44: warning: unused variable 'maxincell' [-Wunused-variable]
   int        prev,resnr,nresadd,d,k,ncells,maxincell;
                                            ^~~~~~~~~
../../../src/tools/addconf.c:325:37: warning: unused variable 'ncells' [-Wunused-variable]
   int        prev,resnr,nresadd,d,k,ncells,maxincell;
                                     ^~~~~~
../../../src/tools/addconf.c:325:35: warning: unused variable 'k' [-Wunused-variable]
   int        prev,resnr,nresadd,d,k,ncells,maxincell;
                                   ^
../../../src/tools/addconf.c:325:33: warning: unused variable 'd' [-Wunused-variable]
   int        prev,resnr,nresadd,d,k,ncells,maxincell;
                                 ^
../../../src/tools/addconf.c:325:19: warning: unused variable 'resnr' [-Wunused-variable]
   int        prev,resnr,nresadd,d,k,ncells,maxincell;
                   ^~~~~
../../../src/tools/addconf.c:324:47: warning: unused variable 'iprot' [-Wunused-variable]
   int        i,j,jj,m,j0,j1,jjj,jnres,jnr,inr,iprot,is1,is2;
                                               ^~~~~
../../../src/tools/addconf.c:324:21: warning: unused variable 'm' [-Wunused-variable]
   int        i,j,jj,m,j0,j1,jjj,jnres,jnr,inr,iprot,is1,is2;
                     ^
../../../src/tools/addconf.c:324:18: warning: unused variable 'jj' [-Wunused-variable]
   int        i,j,jj,m,j0,j1,jjj,jnres,jnr,inr,iprot,is1,is2;
                  ^~
../../../src/tools/addconf.c:322:47: warning: unused variable 'ib2' [-Wunused-variable]
   real       max_vdw,*r_prot,*r_all,n2,r2,ib1,ib2;
                                               ^~~
../../../src/tools/addconf.c:322:43: warning: unused variable 'ib1' [-Wunused-variable]
   real       max_vdw,*r_prot,*r_all,n2,r2,ib1,ib2;
                                           ^~~
At top level:
../../../src/tools/addconf.c:70:13: warning: 'set_margin' defined but not used [-Wunused-function]
 static void set_margin(t_atoms *atoms, rvec *x, real *r)
             ^~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/addconf.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/addconf.c:46:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/tools/addconf.c:42:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/addconf.c:42:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_analyze.o ../../../src/tools/g_analyze.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_anaeig.o ../../../src/tools/g_anaeig.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_vanhove.lo ../../../src/tools/gmx_vanhove.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_vanhove.c  -fPIC -DPIC -o .libs/gmx_vanhove.o
In file included from ../../../src/tools/gmx_vanhove.c:56:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/tools/gmx_vanhove.c:51:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_vanhove.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_vanhove.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_angle.o ../../../src/tools/g_angle.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_chi.o ../../../src/tools/g_chi.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_bond.o ../../../src/tools/g_bond.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_bundle.o ../../../src/tools/g_bundle.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_confrms.o ../../../src/tools/g_confrms.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_cluster.o ../../../src/tools/g_cluster.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_current.o ../../../src/tools/g_current.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_covar.o ../../../src/tools/g_covar.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_density.o ../../../src/tools/g_density.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o anadock.o ../../../src/tools/anadock.c
../../../src/tools/anadock.c: In function 'rmsd_dist':
../../../src/tools/anadock.c:197:13: warning: variable 'dist' set but not used [-Wunused-but-set-variable]
   real rmsd,dist;
             ^~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/anadock.c:47:
At top level:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/anadock.c:46:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/anadock.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/anadock.c:41:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
../../../src/tools/anadock.c: In function 'main':
../../../src/tools/anadock.c:110:22: warning: '%d' directive writing between 1 and 10 bytes into a region of size between 0 and 255 [-Wformat-overflow=]
     sprintf(name,"%s_%d.pdb",buf,i+1);
                      ^~
../../../src/tools/anadock.c:110:18: note: directive argument in the range [1, 2147483647]
     sprintf(name,"%s_%d.pdb",buf,i+1);
                  ^~~~~~~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../include/typedefs.h:52,
                 from ../../../include/confio.h:44,
                 from ../../../src/tools/anadock.c:40:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 7 and 271 bytes into a destination of size 256
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_densmap.o ../../../src/tools/g_densmap.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
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i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_dih.o ../../../src/tools/g_dih.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
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i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_helixorient.o ../../../src/tools/g_helixorient.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
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i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_dielectric.o ../../../src/tools/g_dielectric.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_principal.o ../../../src/tools/g_principal.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
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i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_dipoles.o ../../../src/tools/g_dipoles.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
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i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_disre.o ../../../src/tools/g_disre.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
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i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_dist.o ../../../src/tools/g_dist.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
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i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_dyndom.o ../../../src/tools/g_dyndom.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
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i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_energy.o ../../../src/tools/g_energy.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_lie.o ../../../src/tools/g_lie.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_enemat.o ../../../src/tools/g_enemat.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_filter.o ../../../src/tools/g_filter.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_gyrate.o ../../../src/tools/g_gyrate.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o make_edi.o ../../../src/tools/make_edi.c
../../../src/tools/make_edi.c: In function 'sscan_list':
../../../src/tools/make_edi.c:185:14: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
              else status=sError; break;
              ^~~~
../../../src/tools/make_edi.c:185:34: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else'
              else status=sError; break;
                                  ^~~~~
../../../src/tools/make_edi.c: In function 'main':
../../../src/tools/make_edi.c:640:10: warning: variable 'bTop' set but not used [-Wunused-but-set-variable]
     bool bTop, bFit1;
          ^~~~
In file included from ../../../src/tools/make_edi.c:56:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/tools/make_edi.c:52:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/make_edi.c:50:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/make_edi.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/make_edi.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_helix.o ../../../src/tools/g_helix.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
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i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_h2order.o ../../../src/tools/g_h2order.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
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i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_hbond.o ../../../src/tools/g_hbond.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
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i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_nmeig.o ../../../src/tools/g_nmeig.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
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i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_mindist.o ../../../src/tools/g_mindist.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
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i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_order.o ../../../src/tools/g_order.c
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i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_msd.o ../../../src/tools/g_msd.c
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i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_morph.o ../../../src/tools/g_morph.c
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i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_polystat.o ../../../src/tools/g_polystat.c
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i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_nmens.o ../../../src/tools/g_nmens.c
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i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_rms.o ../../../src/tools/g_rms.c
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i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_rama.o ../../../src/tools/g_rama.c
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i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_potential.o ../../../src/tools/g_potential.c
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i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_rmsdist.o ../../../src/tools/g_rmsdist.c
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i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_saltbr.o ../../../src/tools/g_saltbr.c
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i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_rotacf.o ../../../src/tools/g_rotacf.c
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i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_sham.o ../../../src/tools/g_sham.c
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i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_rmsf.o ../../../src/tools/g_rmsf.c
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i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_sgangle.o ../../../src/tools/g_sgangle.c
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i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_sorient.o ../../../src/tools/g_sorient.c
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i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_spol.o ../../../src/tools/g_spol.c
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i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_tcaf.o ../../../src/tools/g_tcaf.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
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i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_traj.o ../../../src/tools/g_traj.c
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i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_sdf.o ../../../src/tools/g_sdf.c
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i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_spatial.o ../../../src/tools/g_spatial.c
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i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_vanhove.o ../../../src/tools/g_vanhove.c
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i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_velacc.o ../../../src/tools/g_velacc.c
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i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_mdmat.o ../../../src/tools/g_mdmat.c
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i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_clustsize.o ../../../src/tools/g_clustsize.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
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i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_wham.o ../../../src/tools/g_wham.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
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i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_kinetics.o ../../../src/tools/g_kinetics.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_trjconv.lo ../../../src/tools/gmx_trjconv.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_trjconv.c  -fPIC -DPIC -o .libs/gmx_trjconv.o
../../../src/tools/gmx_trjconv.c: In function 'calc_pbc_cluster':
../../../src/tools/gmx_trjconv.c:89:34: warning: unused variable 'is' [-Wunused-variable]
   int     m,i,j,j0,j1,jj,ai,iter,is;
                                  ^~
../../../src/tools/gmx_trjconv.c: In function 'put_molecule_com_in_box':
../../../src/tools/gmx_trjconv.c:252:29: warning: unused variable 'dx' [-Wunused-variable]
   rvec    com,new_com,shift,dx,box_center;
                             ^~
../../../src/tools/gmx_trjconv.c: In function 'put_residue_com_in_box':
../../../src/tools/gmx_trjconv.c:303:37: warning: variable 'res_nat' set but not used [-Wunused-but-set-variable]
   atom_id i, j, res_start, res_end, res_nat;
                                     ^~~~~~~
../../../src/tools/gmx_trjconv.c: In function 'gmx_trjconv':
../../../src/tools/gmx_trjconv.c:726:16: warning: unused variable 'xdr' [-Wunused-variable]
   int          xdr=0;
                ^~~
../../../src/tools/gmx_trjconv.c:725:42: warning: unused variable 'command' [-Wunused-variable]
   char         top_title[256],title[256],command[256],filemode[5];
                                          ^~~~~~~
../../../src/tools/gmx_trjconv.c:715:21: warning: variable 'bFitXY' set but not used [-Wunused-but-set-variable]
   bool         bFit,bFitXY,bPFit,bReset;
                     ^~~~~~
../../../src/tools/gmx_trjconv.c:707:25: warning: unused variable 'gn_rms' [-Wunused-variable]
   char         *gn_fit,*gn_rms;
                         ^~~~~~
../../../src/tools/gmx_trjconv.c:706:26: warning: unused variable 'ind_rms' [-Wunused-variable]
   atom_id      *ind_fit,*ind_rms;
                          ^~~~~~~
../../../src/tools/gmx_trjconv.c:705:21: warning: unused variable 'irms' [-Wunused-variable]
   int          ifit,irms,my_clust=-1;
                     ^~~~
../../../src/tools/gmx_trjconv.c:695:55: warning: unused variable 'nre' [-Wunused-variable]
   int          m,i,d,frame,outframe,natoms,nout,ncent,nre,newstep=0,model_nr;
                                                       ^~~
../../../src/tools/gmx_trjconv.c:694:23: warning: unused variable 'lambda' [-Wunused-variable]
   real         xtcpr, lambda,*w_rls=NULL;
                       ^~~~~~
../../../src/tools/gmx_trjconv.c:694:16: warning: unused variable 'xtcpr' [-Wunused-variable]
   real         xtcpr, lambda,*w_rls=NULL;
                ^~~~~
../../../src/tools/gmx_trjconv.c:693:49: warning: unused variable 'dx' [-Wunused-variable]
   rvec         *xp=NULL,x_shift,hbox,box_center,dx;
                                                 ^~
../../../src/tools/gmx_trjconv.c:693:38: warning: unused variable 'box_center' [-Wunused-variable]
   rvec         *xp=NULL,x_shift,hbox,box_center,dx;
                                      ^~~~~~~~~~
In file included from ../../../src/tools/gmx_trjconv.c:57:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_trjconv.c:57:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_trjconv.c:53:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_trjconv.c:51:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_trjconv.c:47:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
../../../src/tools/gmx_trjconv.c: In function 'gmx_trjconv':
../../../src/tools/gmx_trjconv.c:1325:46: warning: '%s' directive writing up to 255 bytes into a region of size 233 [-Wformat-overflow=]
        sprintf(title,"Generated by trjconv : %s t= %9.5f",
                                              ^~
         top_title,fr.time);
         ~~~~~~~~~                             
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../include/typedefs.h:52,
                 from ../../../include/macros.h:49,
                 from ../../../src/tools/gmx_trjconv.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 37 and 599 bytes into a destination of size 256
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/tools/gmx_trjconv.c:1336:20: warning: ' t= ' directive writing 4 bytes into a region of size between 1 and 256 [-Wformat-overflow=]
   sprintf(title,"%s t= %9.5f",top_title,frout.time);
                    ^~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../include/typedefs.h:52,
                 from ../../../include/macros.h:49,
                 from ../../../src/tools/gmx_trjconv.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 14 and 576 bytes into a destination of size 256
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o sigeps.o ../../../src/tools/sigeps.c
../../../src/tools/sigeps.c: In function 'main':
../../../src/tools/sigeps.c:106:42: warning: unused variable 'pp' [-Wunused-variable]
   real      qq,x,oldx,minimum,mval,dp[2],pp[2];
                                          ^~
In file included from ../../../src/tools/sigeps.c:50:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/sigeps.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/sigeps.c:47:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/tools/sigeps.c:44:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/sigeps.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_editconf.lo ../../../src/tools/gmx_editconf.c
 i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_editconf.c  -fPIC -DPIC -o .libs/gmx_editconf.o
../../../src/tools/gmx_editconf.c: In function 'calc_geom':
../../../src/tools/gmx_editconf.c:103:12: warning: unused variable 'grpnames' [-Wunused-variable]
   char    *grpnames;
            ^~~~~~~~
../../../src/tools/gmx_editconf.c: In function 'set_pdb_conf_bfac':
../../../src/tools/gmx_editconf.c:195:9: warning: unused variable 'out' [-Wunused-variable]
   FILE *out;
         ^~~
../../../src/tools/gmx_editconf.c: In function 'gmx_editconf':
../../../src/tools/gmx_editconf.c:518:35: warning: unused variable 'zcent' [-Wunused-variable]
   real       xs,ys,zs,xcent,ycent,zcent,diam=0,mass=0,d,vdw;
                                   ^~~~~
../../../src/tools/gmx_editconf.c:518:29: warning: unused variable 'ycent' [-Wunused-variable]
   real       xs,ys,zs,xcent,ycent,zcent,diam=0,mass=0,d,vdw;
                             ^~~~~
../../../src/tools/gmx_editconf.c:518:23: warning: unused variable 'xcent' [-Wunused-variable]
   real       xs,ys,zs,xcent,ycent,zcent,diam=0,mass=0,d,vdw;
                       ^~~~~
../../../src/tools/gmx_editconf.c:518:20: warning: unused variable 'zs' [-Wunused-variable]
   real       xs,ys,zs,xcent,ycent,zcent,diam=0,mass=0,d,vdw;
                    ^~
../../../src/tools/gmx_editconf.c:518:17: warning: unused variable 'ys' [-Wunused-variable]
   real       xs,ys,zs,xcent,ycent,zcent,diam=0,mass=0,d,vdw;
                 ^~
../../../src/tools/gmx_editconf.c:518:14: warning: unused variable 'xs' [-Wunused-variable]
   real       xs,ys,zs,xcent,ycent,zcent,diam=0,mass=0,d,vdw;
              ^~
../../../src/tools/gmx_editconf.c:516:38: warning: unused variable 'bCubic' [-Wunused-variable]
   bool       bIndex,bSetSize,bSetAng,bCubic,bDist,bSetCenter;
                                      ^~~~~~
../../../src/tools/gmx_editconf.c:512:30: warning: unused variable 'tindex' [-Wunused-variable]
   atom_id    *index,*sindex,*tindex;
                              ^~~~~~
../../../src/tools/gmx_editconf.c:511:26: warning: unused variable 'tsize' [-Wunused-variable]
   int        isize,ssize,tsize;
                          ^~~~~
../../../src/tools/gmx_editconf.c:456:33: warning: unused variable 'to_diam' [-Wunused-variable]
   static real dist=0.0,rbox=0.0,to_diam=0.0;
                                 ^~~~~~~
../../../src/tools/gmx_editconf.c:456:24: warning: unused variable 'rbox' [-Wunused-variable]
   static real dist=0.0,rbox=0.0,to_diam=0.0;
                        ^~~~
At top level:
../../../src/tools/gmx_editconf.c:456:24: warning: 'rbox' defined but not used [-Wunused-variable]
../../../src/tools/gmx_editconf.c:456:33: warning: 'to_diam' defined but not used [-Wunused-variable]
   static real dist=0.0,rbox=0.0,to_diam=0.0;
                                 ^~~~~~~
../../../src/tools/gmx_editconf.c:79:14: warning: 'pdbtp' defined but not used [-Wunused-variable]
 static char *pdbtp[epdbNR]={"ATOM  ","HETATM"};
              ^~~~~
In file included from ../../../src/tools/gmx_editconf.c:53:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_editconf.c:53:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_editconf.c:49:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_editconf.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_editconf.c:43:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o make_ndx.o ../../../src/tools/make_ndx.c
In file included from ../../../src/tools/make_ndx.c:52:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/make_ndx.c:52:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/make_ndx.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/make_ndx.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
../../../src/tools/make_ndx.c: In function 'main':
../../../src/tools/make_ndx.c:994:20: warning: '_&_' directive writing 3 bytes into a region of size between 1 and 4096 [-Wformat-overflow=]
   sprintf(gname,"%s_&_%s",gname1,gname2);
                    ^~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/tools/make_ndx.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 4 and 8194 bytes into a destination of size 4096
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/tools/make_ndx.c:990:21: warning: '%s' directive writing up to 4095 bytes into a region of size between 0 and 4095 [-Wformat-overflow=]
   sprintf(gname,"%s_%s",gname1,gname2);
                     ^~         ~~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/tools/make_ndx.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 2 and 8192 bytes into a destination of size 4096
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -version-info 5:0:0 -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o libgmxana_d.la -rpath /usr/lib autocorr.lo expfit.lo polynomials.lo levenmar.lo anadih.lo pp2shift.lo dlist.lo eigio.lo lsq.lo cmat.lo eigensolver.lo nsc.lo hxprops.lo fitahx.lo gmx_analyze.lo gmx_anaeig.lo gmx_angle.lo gmx_bond.lo gmx_bundle.lo gmx_chi.lo gmx_cluster.lo gmx_confrms.lo gmx_covar.lo gmx_current.lo gmx_density.lo gmx_densmap.lo gmx_dih.lo gmx_dielectric.lo gmx_kinetics.lo gmx_spatial.lo gmx_dipoles.lo gmx_disre.lo gmx_dist.lo gmx_dyndom.lo gmx_enemat.lo gmx_energy.lo gmx_lie.lo gmx_filter.lo gmx_gyrate.lo gmx_h2order.lo gmx_hbond.lo gmx_helix.lo gmx_mindist.lo gmx_msd.lo gmx_morph.lo gmx_nmeig.lo gmx_nmens.lo gmx_order.lo gmx_principal.lo gmx_polystat.lo gmx_potential.lo gmx_rama.lo gmx_rdf.lo gmx_rms.lo gmx_rmsdist.lo gmx_rmsf.lo gmx_rotacf.lo gmx_saltbr.lo gmx_sas.lo gmx_sdf.lo gmx_sgangle.lo gmx_sorient.lo gmx_spol.lo gmx_tcaf.lo gmx_traj.lo gmx_velacc.lo gmx_helixorient.lo gmx_clustsize.lo gmx_mdmat.lo gmx_wham.lo correl.lo gmx_sham.lo gmx_nmtraj.lo gmx_trjconv.lo gmx_trjcat.lo gmx_trjorder.lo gmx_xpm2ps.lo gmx_editconf.lo gmx_genbox.lo gmx_genion.lo gmx_genconf.lo gmx_genpr.lo gmx_eneconv.lo gmx_vanhove.lo gmx_wheel.lo addconf.lo calcpot.lo edittop.lo ../gmxlib/libgmx_d.la	../mdlib/libmd_d.la	 -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
i586-alt-linux-gcc -shared  .libs/autocorr.o .libs/expfit.o .libs/polynomials.o .libs/levenmar.o .libs/anadih.o .libs/pp2shift.o .libs/dlist.o .libs/eigio.o .libs/lsq.o .libs/cmat.o .libs/eigensolver.o .libs/nsc.o .libs/hxprops.o .libs/fitahx.o .libs/gmx_analyze.o .libs/gmx_anaeig.o .libs/gmx_angle.o .libs/gmx_bond.o .libs/gmx_bundle.o .libs/gmx_chi.o .libs/gmx_cluster.o .libs/gmx_confrms.o .libs/gmx_covar.o .libs/gmx_current.o .libs/gmx_density.o .libs/gmx_densmap.o .libs/gmx_dih.o .libs/gmx_dielectric.o .libs/gmx_kinetics.o .libs/gmx_spatial.o .libs/gmx_dipoles.o .libs/gmx_disre.o .libs/gmx_dist.o .libs/gmx_dyndom.o .libs/gmx_enemat.o .libs/gmx_energy.o .libs/gmx_lie.o .libs/gmx_filter.o .libs/gmx_gyrate.o .libs/gmx_h2order.o .libs/gmx_hbond.o .libs/gmx_helix.o .libs/gmx_mindist.o .libs/gmx_msd.o .libs/gmx_morph.o .libs/gmx_nmeig.o .libs/gmx_nmens.o .libs/gmx_order.o .libs/gmx_principal.o .libs/gmx_polystat.o .libs/gmx_potential.o .libs/gmx_rama.o .libs/gmx_rdf.o .libs/gmx_rms.o .libs/gmx_rmsdist.o .libs/gmx_rmsf.o .libs/gmx_rotacf.o .libs/gmx_saltbr.o .libs/gmx_sas.o .libs/gmx_sdf.o .libs/gmx_sgangle.o .libs/gmx_sorient.o .libs/gmx_spol.o .libs/gmx_tcaf.o .libs/gmx_traj.o .libs/gmx_velacc.o .libs/gmx_helixorient.o .libs/gmx_clustsize.o .libs/gmx_mdmat.o .libs/gmx_wham.o .libs/correl.o .libs/gmx_sham.o .libs/gmx_nmtraj.o .libs/gmx_trjconv.o .libs/gmx_trjcat.o .libs/gmx_trjorder.o .libs/gmx_xpm2ps.o .libs/gmx_editconf.o .libs/gmx_genbox.o .libs/gmx_genion.o .libs/gmx_genconf.o .libs/gmx_genpr.o .libs/gmx_eneconv.o .libs/gmx_vanhove.o .libs/gmx_wheel.o .libs/addconf.o .libs/calcpot.o .libs/edittop.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/lib/openmpi/lib ../gmxlib/.libs/libgmx_d.so ../mdlib/.libs/libmd_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so  -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wl,-Rpath:/usr/lib/openmpi/lib -Wl,-soname -Wl,libgmxana_d.so.5 -o .libs/libgmxana_d.so.5.0.0
(cd .libs && rm -f libgmxana_d.so.5 && ln -s libgmxana_d.so.5.0.0 libgmxana_d.so.5)
(cd .libs && rm -f libgmxana_d.so && ln -s libgmxana_d.so.5.0.0 libgmxana_d.so)
creating libgmxana_d.la
(cd .libs && rm -f libgmxana_d.la && ln -s ../libgmxana_d.la libgmxana_d.la)
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_nmtraj g_nmtraj.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/eigio.o .libs/gmx_nmtraj.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_nmtraj g_nmtraj.o .libs/eigio.o .libs/gmx_nmtraj.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_nmtraj
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o do_dssp do_dssp.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/do_dssp do_dssp.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating do_dssp
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o genbox genbox.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/addconf.o .libs/gmx_genbox.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/genbox genbox.o .libs/addconf.o .libs/gmx_genbox.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating genbox
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o make_ndx make_ndx.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/make_ndx make_ndx.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating make_ndx
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o eneconv eneconv.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_eneconv.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/eneconv eneconv.o .libs/gmx_eneconv.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating eneconv
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o genconf genconf.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_genconf.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/genconf genconf.o .libs/gmx_genconf.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating genconf
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o editconf editconf.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_editconf.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/editconf editconf.o .libs/gmx_editconf.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating editconf
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o genrestr genrestr.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_genpr.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/genrestr genrestr.o .libs/gmx_genpr.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating genrestr
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o mk_angndx mk_angndx.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/mk_angndx mk_angndx.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating mk_angndx
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/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o trjcat trjcat.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_trjcat.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/trjcat trjcat.o .libs/gmx_trjcat.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating trjcat
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o trjorder trjorder.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_trjorder.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/trjorder trjorder.o .libs/gmx_trjorder.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating trjorder
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/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o xpm2ps xpm2ps.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_xpm2ps.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/xpm2ps xpm2ps.o .libs/gmx_xpm2ps.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating xpm2ps
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
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/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o trjconv trjconv.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_trjconv.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/trjconv trjconv.o .libs/gmx_trjconv.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating trjconv
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
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/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o wheel wheel.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_wheel.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/wheel wheel.o .libs/gmx_wheel.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating wheel
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make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o genion genion.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/calcpot.o .libs/gmx_genion.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/genion genion.o .libs/calcpot.o .libs/gmx_genion.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating genion
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/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o anadock anadock.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/lsq.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/anadock anadock.o .libs/lsq.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating anadock
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/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o make_edi make_edi.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/eigio.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/make_edi make_edi.o .libs/eigio.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating make_edi
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/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_angle g_angle.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/dlist.o .libs/anadih.o .libs/gmx_angle.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_angle g_angle.o .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/dlist.o .libs/anadih.o .libs/gmx_angle.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_angle
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/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_anaeig g_anaeig.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/eigio.o .libs/gmx_anaeig.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_anaeig g_anaeig.o .libs/eigio.o .libs/gmx_anaeig.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_anaeig
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/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_analyze g_analyze.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_hbond.o .libs/gmx_analyze.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_analyze g_analyze.o .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_hbond.o .libs/gmx_analyze.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_analyze
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
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/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_bundle g_bundle.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_bundle.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_bundle g_bundle.o .libs/gmx_bundle.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_bundle
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/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_bond g_bond.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/lsq.o .libs/gmx_bond.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_bond g_bond.o .libs/lsq.o .libs/gmx_bond.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_bond
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/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_cluster g_cluster.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/eigensolver.o .libs/cmat.o .libs/gmx_cluster.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_cluster g_cluster.o .libs/eigensolver.o .libs/cmat.o .libs/gmx_cluster.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_cluster
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/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_chi g_chi.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/pp2shift.o .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/dlist.o .libs/anadih.o .libs/gmx_chi.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_chi g_chi.o .libs/pp2shift.o .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/dlist.o .libs/anadih.o .libs/gmx_chi.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_chi
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/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_confrms g_confrms.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_confrms.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_confrms g_confrms.o .libs/gmx_confrms.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_confrms
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/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_current g_current.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_current.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_current g_current.o .libs/gmx_current.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_current
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/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_density g_density.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_density.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_density g_density.o .libs/gmx_density.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_density
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/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_covar g_covar.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/eigensolver.o .libs/eigio.o .libs/gmx_covar.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_covar g_covar.o .libs/eigensolver.o .libs/eigio.o .libs/gmx_covar.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_covar
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/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_dih g_dih.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_dih.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_dih g_dih.o .libs/gmx_dih.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_dih
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/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_densmap g_densmap.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_densmap.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_densmap g_densmap.o .libs/gmx_densmap.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_densmap
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/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_dielectric g_dielectric.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/gmx_dielectric.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_dielectric g_dielectric.o .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/gmx_dielectric.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_dielectric
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/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_helixorient g_helixorient.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_helixorient.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_helixorient g_helixorient.o .libs/gmx_helixorient.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_helixorient
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/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_principal g_principal.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_principal.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_principal g_principal.o .libs/gmx_principal.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_principal
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/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_disre g_disre.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_disre.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_disre g_disre.o .libs/gmx_disre.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_disre
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/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_dyndom g_dyndom.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_dyndom.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_dyndom g_dyndom.o .libs/gmx_dyndom.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_dyndom
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/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_energy g_energy.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/gmx_energy.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_energy g_energy.o .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/gmx_energy.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_energy
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
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/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_dipoles g_dipoles.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/lsq.o .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/gmx_dipoles.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_dipoles g_dipoles.o .libs/lsq.o .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/gmx_dipoles.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_dipoles
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/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_dist g_dist.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_dist.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_dist g_dist.o .libs/gmx_dist.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_dist
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/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_enemat g_enemat.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_enemat.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_enemat g_enemat.o .libs/gmx_enemat.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_enemat
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/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_lie g_lie.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_lie.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_lie g_lie.o .libs/gmx_lie.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_lie
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/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_filter g_filter.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_filter.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_filter g_filter.o .libs/gmx_filter.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_filter
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/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_gyrate g_gyrate.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/gmx_gyrate.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_gyrate g_gyrate.o .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/gmx_gyrate.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_gyrate
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/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_h2order g_h2order.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_h2order.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_h2order g_h2order.o .libs/gmx_h2order.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_h2order
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/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_helix g_helix.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/hxprops.o .libs/fitahx.o .libs/gmx_helix.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_helix g_helix.o .libs/hxprops.o .libs/fitahx.o .libs/gmx_helix.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_helix
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/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_msd g_msd.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/lsq.o .libs/gmx_msd.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_msd g_msd.o .libs/lsq.o .libs/gmx_msd.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_msd
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/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_morph g_morph.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_morph.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_morph g_morph.o .libs/gmx_morph.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_morph
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/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_mindist g_mindist.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_mindist.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_mindist g_mindist.o .libs/gmx_mindist.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_mindist
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/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_hbond g_hbond.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_hbond.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_hbond g_hbond.o .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_hbond.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_hbond
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
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/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_nmeig g_nmeig.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/eigensolver.o .libs/eigio.o .libs/gmx_nmeig.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_nmeig g_nmeig.o .libs/eigensolver.o .libs/eigio.o .libs/gmx_nmeig.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_nmeig
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/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_nmens g_nmens.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/eigensolver.o .libs/eigio.o .libs/gmx_nmens.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_nmens g_nmens.o .libs/eigensolver.o .libs/eigio.o .libs/gmx_nmens.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_nmens
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
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/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_polystat g_polystat.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_polystat.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_polystat g_polystat.o .libs/gmx_polystat.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_polystat
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
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/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_rdf g_rdf.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_rdf.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_rdf g_rdf.o .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_rdf.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_rdf
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
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/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_potential g_potential.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_potential.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_potential g_potential.o .libs/gmx_potential.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_potential
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/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_order g_order.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_order.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_order g_order.o .libs/gmx_order.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_order
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/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_rama g_rama.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_rama.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_rama g_rama.o .libs/gmx_rama.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_rama
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/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_rms g_rms.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/cmat.o .libs/gmx_rms.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_rms g_rms.o .libs/cmat.o .libs/gmx_rms.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_rms
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
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/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_rmsdist g_rmsdist.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_rmsdist.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_rmsdist g_rmsdist.o .libs/gmx_rmsdist.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_rmsdist
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/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_rmsf g_rmsf.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/eigensolver.o .libs/gmx_rmsf.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_rmsf g_rmsf.o .libs/eigensolver.o .libs/gmx_rmsf.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_rmsf
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/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_sas g_sas.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/nsc.o .libs/gmx_sas.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_sas g_sas.o .libs/nsc.o .libs/gmx_sas.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_sas
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/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_saltbr g_saltbr.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_saltbr.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_saltbr g_saltbr.o .libs/gmx_saltbr.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_saltbr
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
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/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_sham g_sham.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_sham.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_sham g_sham.o .libs/gmx_sham.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_sham
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/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_rotacf g_rotacf.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_rotacf.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_rotacf g_rotacf.o .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_rotacf.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_rotacf
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
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/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_sorient g_sorient.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_sorient.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_sorient g_sorient.o .libs/gmx_sorient.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_sorient
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/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_sgangle g_sgangle.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_sgangle.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_sgangle g_sgangle.o .libs/gmx_sgangle.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_sgangle
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/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_spol g_spol.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_spol.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_spol g_spol.o .libs/gmx_spol.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_spol
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/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_sdf g_sdf.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_sdf.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_sdf g_sdf.o .libs/gmx_sdf.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_sdf
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/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_spatial g_spatial.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_spatial.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_spatial g_spatial.o .libs/gmx_spatial.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_spatial
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/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_tcaf g_tcaf.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_tcaf.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_tcaf g_tcaf.o .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_tcaf.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_tcaf
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/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_vanhove g_vanhove.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_vanhove.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_vanhove g_vanhove.o .libs/gmx_vanhove.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_vanhove
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/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_traj g_traj.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_traj.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_traj g_traj.o .libs/gmx_traj.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_traj
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/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_clustsize g_clustsize.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_clustsize.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_clustsize g_clustsize.o .libs/gmx_clustsize.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_clustsize
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/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_velacc g_velacc.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_velacc.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_velacc g_velacc.o .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_velacc.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_velacc
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/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_mdmat g_mdmat.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_mdmat.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_mdmat g_mdmat.o .libs/gmx_mdmat.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_mdmat
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/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_wham g_wham.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_wham.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_wham g_wham.o .libs/gmx_wham.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_wham
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o sigeps sigeps.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/sigeps sigeps.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating sigeps
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_kinetics g_kinetics.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_kinetics.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_kinetics g_kinetics.o .libs/gmx_kinetics.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_kinetics
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
Making all in ngmx
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o ngmx.o ../../../src/ngmx/ngmx.c
../../../src/ngmx/ngmx.c: In function 'dump_xw':
../../../src/ngmx/ngmx.c:68:8: warning: variable 'rc' set but not used [-Wunused-but-set-variable]
   int  rc;
        ^~
../../../src/ngmx/ngmx.c: In function 'init_gmx':
../../../src/ngmx/ngmx.c:354:35: warning: unused variable 'nre' [-Wunused-variable]
   int                  step,natom,nre,natom_trx;
                                   ^~~
At top level:
../../../src/ngmx/ngmx.c:65:13: warning: 'dump_xw' defined but not used [-Wunused-function]
 static void dump_xw(char *dispname,Window w,char *fn)
             ^~~~~~~
In file included from ../../../src/ngmx/ngmx.c:52:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/ngmx/ngmx.c:49:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o popup.o ../../../src/ngmx/popup.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o fgrid.o ../../../src/ngmx/fgrid.c
../../../src/ngmx/fgrid.c: In function 'GetBuf':
../../../src/ngmx/fgrid.c:101:7: warning: variable 'rc' set but not used [-Wunused-but-set-variable]
   int rc;
       ^~
../../../src/ngmx/fgrid.c: In function 'FGridFromFile':
../../../src/ngmx/fgrid.c:346:8: warning: unused variable 'newinfile' [-Wunused-variable]
   char newinfile[STRLEN];
        ^~~~~~~~~
../../../src/ngmx/fgrid.c:345:9: warning: unused variable 'gmxlib' [-Wunused-variable]
   char *gmxlib;
         ^~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o xmb.o ../../../src/ngmx/xmb.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o xutil.o ../../../src/ngmx/xutil.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o x11.o ../../../src/ngmx/x11.c
../../../src/ngmx/x11.c:265:13: warning: 'Xrm' defined but not used [-Wunused-function]
 static void Xrm(int *argc, char *argv[])
             ^~~
../../../src/ngmx/x11.c:132:13: warning: 'TestEvent' defined but not used [-Wunused-function]
 static Bool TestEvent(Display *disp,XEvent *event,char *arg)
             ^~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o xdlghi.o ../../../src/ngmx/xdlghi.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nleg.o ../../../src/ngmx/nleg.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o logo.o ../../../src/ngmx/logo.c
In file included from ../../../src/ngmx/logo.c:45:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o filter.o ../../../src/ngmx/filter.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o molps.o ../../../src/ngmx/molps.c
../../../src/ngmx/molps.c: In function 'ps_draw_mol':
../../../src/ngmx/molps.c:204:15: warning: unused variable 'ntime' [-Wunused-variable]
   static int  ntime=0;
               ^~~~~
../../../src/ngmx/molps.c:203:15: warning: unused variable 'tstr' [-Wunused-variable]
   static char tstr[2][20];
               ^~~~
At top level:
../../../src/ngmx/molps.c:203:15: warning: 'tstr' defined but not used [-Wunused-variable]
../../../src/ngmx/molps.c:204:15: warning: 'ntime' defined but not used [-Wunused-variable]
   static int  ntime=0;
               ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o xdlgitem.o ../../../src/ngmx/xdlgitem.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o pulldown.o ../../../src/ngmx/pulldown.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o highway.o ../../../src/ngmx/highway.c
In file included from ../../../include/statutil.h:51,
                 from ../../../src/ngmx/highway.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/ngmx/highway.c:46:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o buttons.o ../../../src/ngmx/buttons.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dialogs.o ../../../src/ngmx/dialogs.c
../../../src/ngmx/dialogs.c:373:13: warning: 'in_set' defined but not used [-Wunused-function]
 static bool in_set(int i,int n,int set[])
             ^~~~~~
../../../src/ngmx/dialogs.c:240:13: warning: 'Extract' defined but not used [-Wunused-function]
 static void Extract(t_dlg *dlg,int ID,char *buf)
             ^~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o xdlg.o ../../../src/ngmx/xdlg.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o xrama.o ../../../src/ngmx/xrama.c
../../../src/ngmx/xrama.c: In function 'main':
../../../src/ngmx/xrama.c:319:15: warning: variable 'ramatop' set but not used [-Wunused-but-set-variable]
   t_topology *ramatop;
               ^~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/ngmx/xrama.c:50:
At top level:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/ngmx/xrama.c:44:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nmol.o ../../../src/ngmx/nmol.c
../../../src/ngmx/nmol.c: In function 'draw_box':
../../../src/ngmx/nmol.c:422:23: warning: unused variable 'tv2' [-Wunused-variable]
   iv2  vec2[NCUCEDGE],tv2;
                       ^~~
In file included from ../../../src/ngmx/nmol.c:51:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/ngmx/nmol.c:51:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o manager.o ../../../src/ngmx/manager.c
../../../src/ngmx/manager.c: In function 'set_file':
../../../src/ngmx/manager.c:182:18: warning: unused variable 'idum' [-Wunused-variable]
   int          i,idum;
                  ^~~~
../../../src/ngmx/manager.c: In function 'step_man':
../../../src/ngmx/manager.c:312:15: warning: unused variable 'dum' [-Wunused-variable]
   int         dum;
               ^~~
../../../src/ngmx/manager.c:311:15: warning: unused variable 'rdum' [-Wunused-variable]
   real        rdum;
               ^~~~
In file included from ../../../src/ngmx/manager.c:57:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/ngmx/manager.c:56:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/ngmx/manager.c:55:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/ngmx/manager.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
../../../src/ngmx/manager.c: In function 'set_file':
../../../src/ngmx/manager.c:213:20: warning: '%s' directive writing up to 255 bytes into a region of size 254 [-Wformat-overflow=]
   sprintf(buf,"%s: %s",*man->top.name,quote);
                    ^~                 ~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/ngmx/manager.c:40:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 3 or more bytes (assuming 258) into a destination of size 256
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o ngmx ngmx.o xutil.o xmb.o x11.o xdlghi.o fgrid.o xdlgitem.o popup.o pulldown.o xdlg.o manager.o buttons.o nmol.o nleg.o dialogs.o logo.o filter.o molps.o ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
mkdir .libs
i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -o .libs/ngmx ngmx.o xutil.o xmb.o x11.o xdlghi.o fgrid.o xdlgitem.o popup.o pulldown.o xdlg.o manager.o buttons.o nmol.o nleg.o dialogs.o logo.o filter.o molps.o  -lgslcblas ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath 
creating ngmx
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o xrama xrama.o xutil.o xmb.o x11.o xdlghi.o fgrid.o xdlgitem.o popup.o pulldown.o xdlg.o manager.o buttons.o nmol.o nleg.o dialogs.o logo.o filter.o molps.o ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -o .libs/xrama xrama.o xutil.o xmb.o x11.o xdlghi.o fgrid.o xdlgitem.o popup.o pulldown.o xdlg.o manager.o buttons.o nmol.o nleg.o dialogs.o logo.o filter.o molps.o  -lgslcblas ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath 
creating xrama
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
/bin/sh ../../libtool  --tag=CC   --mode=link i586-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o highway highway.o xutil.o xmb.o x11.o xdlghi.o fgrid.o xdlgitem.o popup.o pulldown.o xdlg.o manager.o buttons.o nmol.o nleg.o dialogs.o logo.o filter.o molps.o ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -o .libs/highway highway.o xutil.o xmb.o x11.o xdlghi.o fgrid.o xdlgitem.o popup.o pulldown.o xdlg.o manager.o buttons.o nmol.o nleg.o dialogs.o logo.o filter.o molps.o  -lgslcblas ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath 
creating highway
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
Making all in contrib
make[3]: Nothing to be done for 'all'.
Making all in admin
make[1]: Nothing to be done for 'all'.
Making all in scripts
make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/scripts'
cat ../../scripts/GMXRC.in | sed 's,@bindir\@,/usr/bin,' > GMXRC
make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/scripts'
make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/scripts'
cat ../../scripts/GMXRC.csh.in | sed 's,@libdir\@,/usr/lib,' | \
sed 's,@bindir\@,/usr/bin,' | \
sed 's,@datadir\@,/usr/share,' | \
sed 's,@mandir\@,/usr/share/man,'  > GMXRC.csh
make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/scripts'
make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/scripts'
cat ../../scripts/GMXRC.zsh.in | sed 's,@libdir\@,/usr/lib,' | \
sed 's,@bindir\@,/usr/bin,' | \
sed 's,@datadir\@,/usr/share,' | \
sed 's,@mandir\@,/usr/share/man,'  > GMXRC.zsh
make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/scripts'
make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/scripts'
cat ../../scripts/GMXRC.bash.in | sed 's,@libdir\@,/usr/lib,' | \
sed 's,@bindir\@,/usr/bin,' | \
sed 's,@datadir\@,/usr/share,' | \
sed 's,@mandir\@,/usr/share/man,'  > GMXRC.bash
make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/scripts'
Making all in share
Making all in top
make[2]: Nothing to be done for 'all'.
Making all in tutor
Making all in nmr1
make[3]: Nothing to be done for 'all'.
Making all in nmr2
make[3]: Nothing to be done for 'all'.
Making all in speptide
make[3]: Nothing to be done for 'all'.
Making all in water
make[3]: Nothing to be done for 'all'.
Making all in gmxdemo
make[3]: Nothing to be done for 'all'.
Making all in methanol
make[3]: Nothing to be done for 'all'.
Making all in mixed
make[3]: Nothing to be done for 'all'.
make[3]: Nothing to be done for 'all-am'.
Making all in template
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/template'
cat ../../../share/template/Template.mak | \
sed 's,@LDFLAGS\@,-L/usr/lib  -lgslcblas ,' | \
sed 's,@LIBS\@,-lmd_d -lgmx_d -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath ,' | \
sed 's,@CFLAGS\@,-g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack   -I/usr/include -I/usr/include/gromacs -DGMX_DOUBLE,' | \
sed 's,@CC\@,i586-alt-linux-gcc,' | \
sed 's,@host\@,i586-alt-linux-gnu,' >Makefile.i586-alt-linux-gnu_double
sed: -e expression #1, char 36: unknown option to `s'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/template'
Making all in html
Making all in .
make[3]: Nothing to be done for 'all-am'.
Making all in images
make[3]: Nothing to be done for 'all'.
Making all in online
make[3]: Nothing to be done for 'all'.
make[2]: Nothing to be done for 'all-am'.
Making all in man
Making all in man1
make[2]: Nothing to be done for 'all'.
make[2]: Nothing to be done for 'all-am'.
make[1]: Nothing to be done for 'all-am'.
+ popd
~/RPM/BUILD/gromacs-4.0.7
+ mkdir mpi-single
+ pushd mpi-single
~/RPM/BUILD/gromacs-4.0.7/mpi-single ~/RPM/BUILD/gromacs-4.0.7
+ buildThis float enable _mpi
+ ln -s ../configure .
+ CFLAGS='-pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic'
+ export CFLAGS
+ CXXFLAGS='-pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic'
+ export CXXFLAGS
+ FFLAGS='-pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic'
+ export FFLAGS
+ '[' -n ' -march=i586 -mtune=generic' ']'
+ export ASFLAGS
+ export lt_cv_prog_cc_static_works=no
+ lt_cv_prog_cc_static_works=no
+ export lt_cv_deplibs_check_method=pass_all
+ lt_cv_deplibs_check_method=pass_all
+ readlink -e -- ./configure
+ xargs -ri dirname -- '{}'
+ sort -u
+ xargs -ri find '{}' -type f '(' -name config.sub -or -name config.guess ')' -printf '%h/\n'
+ xargs -rn1 install -pm755 -- /usr/share/gnu-config/config.sub /usr/share/gnu-config/config.guess
+ ./configure --build=i586-alt-linux --host=i586-alt-linux --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib --libexecdir=/usr/lib --localstatedir=/var/lib --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info --disable-dependency-tracking --disable-silent-rules --without-included-gettext --disable-rpath --enable-static=no --enable-shared --enable-float --enable-mpi --enable-prefetch-forces --enable-fortran --with-gnu-ld --with-fft=fftw3 --with-x --with-gsl --enable-mpi --program-suffix=_mpi --with-external-blas=-lopenblas
configure: WARNING: unrecognized options: --without-included-gettext, --disable-rpath, --enable-prefetch-forces
checking build system type... i586-alt-linux-gnu
checking host system type... i586-alt-linux-gnu
checking for a BSD-compatible install... /bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking whether UID '526' is supported by ustar format... yes
checking whether GID '526' is supported by ustar format... yes
checking how to create a ustar tar archive... gnutar
checking for i586-alt-linux-cc... no
checking for i586-alt-linux-icc... no
checking for i586-alt-linux-xlc... no
checking for i586-alt-linux-gcc... i586-alt-linux-gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether i586-alt-linux-gcc accepts -g... yes
checking for i586-alt-linux-gcc option to accept ISO C89... none needed
checking whether i586-alt-linux-gcc understands -c and -o together... yes
checking whether make supports the include directive... yes (GNU style)
checking dependency style of i586-alt-linux-gcc... none
checking for i586-alt-linux-f77... no
checking for i586-alt-linux-ifort... no
checking for i586-alt-linux-xlf... no
checking for i586-alt-linux-xlf77... no
checking for i586-alt-linux-cf77... no
checking for i586-alt-linux-fl32... no
checking for i586-alt-linux-g77... no
checking for i586-alt-linux-fort77... no
checking for i586-alt-linux-f90... no
checking for i586-alt-linux-xlf90... no
checking for i586-alt-linux-pgf77... no
checking for i586-alt-linux-cf77... no
checking for i586-alt-linux-fort... no
checking for i586-alt-linux-fort77... no
checking for i586-alt-linux-pgf90... no
checking for f77... f77
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether f77 accepts -g... yes
checking dependency style of i586-alt-linux-gcc... none
checking for mpxlc... no
checking for mpicc... mpicc
checking whether the MPI cc command works... yes
checking for catamount... no
checking how to get verbose linking output from f77... -v
checking for Fortran 77 libraries of f77...  -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
checking for dummy main to link with Fortran 77 libraries... none
checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore
checking how to run the C preprocessor... mpicc -E
checking whether mpicc accepts -O3... yes
checking whether mpicc accepts -funroll-all-loops... yes
******************************************
* Using CFLAGS from environment variable *
******************************************
******************************************
* Using FFLAGS from environment variable *
******************************************
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking whether byte ordering is bigendian... no
checking size of int... 4
checking size of long int... 4
checking size of long long int... 8
checking size of off_t... 4
checking that size_t can hold pointers... yes
checking floating-point format... IEEE754 (little-endian byte and word order)
checking whether ln -s works... yes
checking whether make sets $(MAKE)... (cached) yes
checking for a sed that does not truncate output... /bin/sed
checking for ld used by mpicc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for /usr/bin/ld option to reload object files... -r
checking for BSD-compatible nm... /usr/bin/nm -B
checking how to recognise dependent libraries... (cached) pass_all
checking dlfcn.h usability... yes
checking dlfcn.h presence... yes
checking for dlfcn.h... yes
checking for i586-alt-linux-g++... i586-alt-linux-g++
checking whether we are using the GNU C++ compiler... yes
checking whether i586-alt-linux-g++ accepts -g... yes
checking dependency style of i586-alt-linux-g++... none
checking how to run the C++ preprocessor... i586-alt-linux-g++ -E
checking the maximum length of command line arguments... 32768
checking command to parse /usr/bin/nm -B output from mpicc object... ok
checking for objdir... .libs
checking for i586-alt-linux-ar... no
checking for ar... ar
checking for i586-alt-linux-ranlib... no
checking for ranlib... ranlib
checking for i586-alt-linux-strip... no
checking for strip... strip
checking if mpicc supports -fno-rtti -fno-exceptions... no
checking for mpicc option to produce PIC... -fPIC
checking if mpicc PIC flag -fPIC works... yes
checking if mpicc static flag -static works... no
checking if mpicc supports -c -o file.o... yes
checking whether the mpicc linker (/usr/bin/ld) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... cat: '/etc/ld.so.conf.d/*.conf': No such file or directory
GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
configure: creating libtool
appending configuration tag "CXX" to libtool
checking for ld used by i586-alt-linux-g++... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking whether the i586-alt-linux-g++ linker (/usr/bin/ld) supports shared libraries... yes
checking for i586-alt-linux-g++ option to produce PIC... -fPIC
checking if i586-alt-linux-g++ PIC flag -fPIC works... yes
checking if i586-alt-linux-g++ static flag -static works... no
checking if i586-alt-linux-g++ supports -c -o file.o... yes
checking whether the i586-alt-linux-g++ linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... cat: '/etc/ld.so.conf.d/*.conf': No such file or directory
GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
appending configuration tag "F77" to libtool
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking for f77 option to produce PIC... -fPIC
checking if f77 PIC flag -fPIC works... yes
checking if f77 static flag -static works... no
checking if f77 supports -c -o file.o... yes
checking whether the f77 linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... cat: '/etc/ld.so.conf.d/*.conf': No such file or directory
GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... 64
checking for _LARGEFILE_SOURCE value needed for large files... no
checking for sqrt in -lm... yes
checking for fftw3.h... yes
checking for main in -lfftw3f... yes
checking rpc/rpc.h usability... yes
checking rpc/rpc.h presence... yes
checking for rpc/rpc.h... yes
checking for rpc/xdr.h... yes
checking for xdr_float in -lnsl... no
checking for working memcmp... yes
checking return type of signal handlers... void
checking for off_t... yes
checking for vprintf... yes
checking for _doprnt... no
checking if malloc debugging is wanted... no
checking for strcasecmp... yes
checking for strdup... yes
checking for bool... no
checking size of int... (cached) 4
checking size of long int... (cached) 4
checking size of long long int... (cached) 8
checking size of off_t... (cached) 4
checking size of void*... 4
checking for X... libraries , headers 
checking for gethostbyname... yes
checking for connect... yes
checking for remove... yes
checking for shmat... yes
checking for IceConnectionNumber in -lICE... yes
checking gsl/gsl_version.h usability... yes
checking gsl/gsl_version.h presence... yes
checking for gsl/gsl_version.h... yes
checking for main in -lgslcblas... yes
checking for main in -lgsl... yes
checking libxml/parser.h usability... no
checking libxml/parser.h presence... no
checking for libxml/parser.h... no
checking limits.h usability... yes
checking limits.h presence... yes
checking for limits.h... yes
checking for strings.h... (cached) yes
checking for unistd.h... (cached) yes
checking for unistd.h... (cached) yes
checking for an ANSI C-conforming const... yes
checking for size_t... yes
checking whether struct tm is in sys/time.h or time.h... time.h
checking for uid_t in sys/types.h... yes
checking for inline... inline
checking whether your compiler can handle assembly files (*.s)... yes
checking whether as fully supports ia32 SSE... yes
checking whether as fully supports ia32 3DNow! instructions... yes
checking whether byte ordering is bigendian... (cached) no
checking if the compiler supports gcc inline assembly... yes
checking if the compiler supports MSVC inline assembly... no
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating src/gmxlib/Makefile
config.status: creating src/gmxlib/gmx_blas/Makefile
config.status: creating src/gmxlib/gmx_lapack/Makefile
config.status: creating src/gmxlib/nonbonded/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_ia32_sse/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_ia32_sse2/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_x86_64_sse/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_ppc_altivec/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_ia64_single/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_ia64_double/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_bluegene/Makefile
config.status: creating include/Makefile
config.status: creating include/types/Makefile
config.status: creating src/mdlib/Makefile
config.status: creating src/kernel/Makefile
config.status: creating src/tools/Makefile
config.status: creating src/ngmx/Makefile
config.status: creating src/contrib/Makefile
config.status: creating scripts/Makefile
config.status: creating admin/Makefile
config.status: creating share/Makefile
config.status: creating share/tutor/Makefile
config.status: creating share/tutor/gmxdemo/Makefile
config.status: creating share/tutor/nmr1/Makefile
config.status: creating share/tutor/nmr2/Makefile
config.status: creating share/tutor/water/Makefile
config.status: creating share/tutor/mixed/Makefile
config.status: creating share/tutor/methanol/Makefile
config.status: creating share/tutor/speptide/Makefile
config.status: creating share/template/Makefile
config.status: creating share/top/Makefile
config.status: creating share/html/Makefile
config.status: creating share/html/images/Makefile
config.status: creating share/html/online/Makefile
config.status: creating man/Makefile
config.status: creating man/man1/Makefile
config.status: creating src/config.h
config.status: executing depfiles commands
configure: WARNING: unrecognized options: --without-included-gettext, --disable-rpath, --enable-prefetch-forces

+ sed -i 's|^hardcode_libdir_flag_spec=.*|hardcode_libdir_flag_spec=""|g' libtool
+ sed -i 's|^runpath_var=LD_RUN_PATH|runpath_var=DIE_RPATH_DIE|g' libtool
+ make -j8
Making all in include
Making all in .
make[2]: Nothing to be done for 'all-am'.
Making all in types
make[2]: Nothing to be done for 'all'.
Making all in src
make  all-recursive
Making all in gmxlib
Making all in nonbonded
Making all in nb_kernel_ia32_sse
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel102_ia32_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel102_ia32_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel102_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel102_ia32_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel110_ia32_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel110_ia32_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel110_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel110_ia32_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel030_ia32_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel030_ia32_sse.s
mkdir .libs
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel030_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel030_ia32_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel103_ia32_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel103_ia32_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel103_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel103_ia32_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel101_ia32_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel101_ia32_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel101_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel101_ia32_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel010_ia32_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel010_ia32_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel010_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel010_ia32_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel100_ia32_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel100_ia32_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel100_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel100_ia32_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel104_ia32_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel104_ia32_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel104_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel104_ia32_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel111_ia32_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel111_ia32_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel111_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel111_ia32_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel112_ia32_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel112_ia32_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel112_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel112_ia32_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel113_ia32_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel113_ia32_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel113_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel113_ia32_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel132_ia32_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel132_ia32_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel132_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel132_ia32_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel114_ia32_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel114_ia32_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel114_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel114_ia32_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel130_ia32_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel130_ia32_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel130_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel130_ia32_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel131_ia32_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel131_ia32_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel131_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel131_ia32_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel133_ia32_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel133_ia32_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel133_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel133_ia32_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel200_ia32_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel200_ia32_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel200_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel200_ia32_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel134_ia32_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel134_ia32_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel134_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel134_ia32_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel201_ia32_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel201_ia32_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel201_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel201_ia32_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel202_ia32_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel202_ia32_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel202_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel202_ia32_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel203_ia32_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel203_ia32_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel203_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel203_ia32_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel211_ia32_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel211_ia32_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel211_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel211_ia32_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel204_ia32_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel204_ia32_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel204_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel204_ia32_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel210_ia32_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel210_ia32_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel210_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel210_ia32_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel212_ia32_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel212_ia32_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel212_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel212_ia32_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel214_ia32_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel214_ia32_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel214_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel214_ia32_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel230_ia32_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel230_ia32_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel230_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel230_ia32_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel213_ia32_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel213_ia32_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel213_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel213_ia32_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel231_ia32_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel231_ia32_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel231_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel231_ia32_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel233_ia32_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel233_ia32_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel233_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel233_ia32_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel234_ia32_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel234_ia32_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel234_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel234_ia32_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel232_ia32_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel232_ia32_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel232_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel232_ia32_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel300_ia32_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel300_ia32_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel300_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel300_ia32_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel303_ia32_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel303_ia32_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel303_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel303_ia32_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel301_ia32_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel301_ia32_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel301_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel301_ia32_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel302_ia32_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel302_ia32_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel302_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel302_ia32_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel311_ia32_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel311_ia32_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel311_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel311_ia32_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel310_ia32_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel310_ia32_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel310_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel310_ia32_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel304_ia32_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel304_ia32_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel304_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel304_ia32_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel312_ia32_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel312_ia32_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel312_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel312_ia32_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel313_ia32_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel313_ia32_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel313_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel313_ia32_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel314_ia32_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel314_ia32_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel314_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel314_ia32_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel330_ia32_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel330_ia32_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel330_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel330_ia32_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel333_ia32_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel333_ia32_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel333_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel333_ia32_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel331_ia32_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel331_ia32_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel331_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel331_ia32_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel400_ia32_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel400_ia32_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel400_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel400_ia32_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel332_ia32_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel332_ia32_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel332_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel332_ia32_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel410_ia32_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel410_ia32_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel410_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel410_ia32_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel334_ia32_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel334_ia32_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel334_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel334_ia32_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel_ia32_sse_test_asm.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel_ia32_sse_test_asm.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel_ia32_sse_test_asm.s  -fPIC -DPIC -o .libs/nb_kernel_ia32_sse_test_asm.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel430_ia32_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel430_ia32_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel430_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel430_ia32_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
/bin/sh ../../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse -I../../../../src  -I../../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel_ia32_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel_ia32_sse.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse -I../../../../src -I../../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel_ia32_sse.c  -fPIC -DPIC -o .libs/nb_kernel_ia32_sse.o
../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel_ia32_sse.c: In function 'nb_kernel_ia32_sse_test':
../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel_ia32_sse.c:210:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
     if(log)
     ^~
../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel_ia32_sse.c:213:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
  nb_kernel_ia32_sse_present = TRUE;
  ^~~~~~~~~~~~~~~~~~~~~~~~~~
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
/bin/sh ../../../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o libnb_kernel_ia32_sse.la  nb_kernel010_ia32_sse.lo nb_kernel030_ia32_sse.lo nb_kernel100_ia32_sse.lo nb_kernel101_ia32_sse.lo nb_kernel102_ia32_sse.lo nb_kernel103_ia32_sse.lo nb_kernel104_ia32_sse.lo nb_kernel110_ia32_sse.lo nb_kernel111_ia32_sse.lo nb_kernel112_ia32_sse.lo nb_kernel113_ia32_sse.lo nb_kernel114_ia32_sse.lo nb_kernel130_ia32_sse.lo nb_kernel131_ia32_sse.lo nb_kernel132_ia32_sse.lo nb_kernel133_ia32_sse.lo nb_kernel134_ia32_sse.lo nb_kernel200_ia32_sse.lo nb_kernel201_ia32_sse.lo nb_kernel202_ia32_sse.lo nb_kernel203_ia32_sse.lo nb_kernel204_ia32_sse.lo nb_kernel210_ia32_sse.lo nb_kernel211_ia32_sse.lo nb_kernel212_ia32_sse.lo nb_kernel213_ia32_sse.lo nb_kernel214_ia32_sse.lo nb_kernel230_ia32_sse.lo nb_kernel231_ia32_sse.lo nb_kernel232_ia32_sse.lo nb_kernel233_ia32_sse.lo nb_kernel234_ia32_sse.lo nb_kernel300_ia32_sse.lo nb_kernel301_ia32_sse.lo nb_kernel302_ia32_sse.lo nb_kernel303_ia32_sse.lo nb_kernel304_ia32_sse.lo nb_kernel310_ia32_sse.lo nb_kernel311_ia32_sse.lo nb_kernel312_ia32_sse.lo nb_kernel313_ia32_sse.lo nb_kernel314_ia32_sse.lo nb_kernel330_ia32_sse.lo nb_kernel331_ia32_sse.lo nb_kernel332_ia32_sse.lo nb_kernel333_ia32_sse.lo nb_kernel334_ia32_sse.lo nb_kernel400_ia32_sse.lo nb_kernel410_ia32_sse.lo nb_kernel430_ia32_sse.lo nb_kernel_ia32_sse_test_asm.lo nb_kernel_ia32_sse.lo  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
ar cru .libs/libnb_kernel_ia32_sse.a .libs/nb_kernel010_ia32_sse.o .libs/nb_kernel030_ia32_sse.o .libs/nb_kernel100_ia32_sse.o .libs/nb_kernel101_ia32_sse.o .libs/nb_kernel102_ia32_sse.o .libs/nb_kernel103_ia32_sse.o .libs/nb_kernel104_ia32_sse.o .libs/nb_kernel110_ia32_sse.o .libs/nb_kernel111_ia32_sse.o .libs/nb_kernel112_ia32_sse.o .libs/nb_kernel113_ia32_sse.o .libs/nb_kernel114_ia32_sse.o .libs/nb_kernel130_ia32_sse.o .libs/nb_kernel131_ia32_sse.o .libs/nb_kernel132_ia32_sse.o .libs/nb_kernel133_ia32_sse.o .libs/nb_kernel134_ia32_sse.o .libs/nb_kernel200_ia32_sse.o .libs/nb_kernel201_ia32_sse.o .libs/nb_kernel202_ia32_sse.o .libs/nb_kernel203_ia32_sse.o .libs/nb_kernel204_ia32_sse.o .libs/nb_kernel210_ia32_sse.o .libs/nb_kernel211_ia32_sse.o .libs/nb_kernel212_ia32_sse.o .libs/nb_kernel213_ia32_sse.o .libs/nb_kernel214_ia32_sse.o .libs/nb_kernel230_ia32_sse.o .libs/nb_kernel231_ia32_sse.o .libs/nb_kernel232_ia32_sse.o .libs/nb_kernel233_ia32_sse.o .libs/nb_kernel234_ia32_sse.o .libs/nb_kernel300_ia32_sse.o .libs/nb_kernel301_ia32_sse.o .libs/nb_kernel302_ia32_sse.o .libs/nb_kernel303_ia32_sse.o .libs/nb_kernel304_ia32_sse.o .libs/nb_kernel310_ia32_sse.o .libs/nb_kernel311_ia32_sse.o .libs/nb_kernel312_ia32_sse.o .libs/nb_kernel313_ia32_sse.o .libs/nb_kernel314_ia32_sse.o .libs/nb_kernel330_ia32_sse.o .libs/nb_kernel331_ia32_sse.o .libs/nb_kernel332_ia32_sse.o .libs/nb_kernel333_ia32_sse.o .libs/nb_kernel334_ia32_sse.o .libs/nb_kernel400_ia32_sse.o .libs/nb_kernel410_ia32_sse.o .libs/nb_kernel430_ia32_sse.o .libs/nb_kernel_ia32_sse_test_asm.o .libs/nb_kernel_ia32_sse.o
ranlib .libs/libnb_kernel_ia32_sse.a
creating libnb_kernel_ia32_sse.la
(cd .libs && rm -f libnb_kernel_ia32_sse.la && ln -s ../libnb_kernel_ia32_sse.la libnb_kernel_ia32_sse.la)
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
Making all in nb_kernel_ia32_3dnow
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel030_ia32_3dnow.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel030_ia32_3dnow.s
mkdir .libs
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel030_ia32_3dnow.s  -fPIC -DPIC -o .libs/nb_kernel030_ia32_3dnow.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel101_ia32_3dnow.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel101_ia32_3dnow.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel101_ia32_3dnow.s  -fPIC -DPIC -o .libs/nb_kernel101_ia32_3dnow.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel111_ia32_3dnow.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel111_ia32_3dnow.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel111_ia32_3dnow.s  -fPIC -DPIC -o .libs/nb_kernel111_ia32_3dnow.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel110_ia32_3dnow.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel110_ia32_3dnow.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel110_ia32_3dnow.s  -fPIC -DPIC -o .libs/nb_kernel110_ia32_3dnow.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel010_ia32_3dnow.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel010_ia32_3dnow.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel010_ia32_3dnow.s  -fPIC -DPIC -o .libs/nb_kernel010_ia32_3dnow.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel100_ia32_3dnow.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel100_ia32_3dnow.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel100_ia32_3dnow.s  -fPIC -DPIC -o .libs/nb_kernel100_ia32_3dnow.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel102_ia32_3dnow.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel102_ia32_3dnow.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel102_ia32_3dnow.s  -fPIC -DPIC -o .libs/nb_kernel102_ia32_3dnow.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel112_ia32_3dnow.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel112_ia32_3dnow.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel112_ia32_3dnow.s  -fPIC -DPIC -o .libs/nb_kernel112_ia32_3dnow.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel301_ia32_3dnow.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel301_ia32_3dnow.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel301_ia32_3dnow.s  -fPIC -DPIC -o .libs/nb_kernel301_ia32_3dnow.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel330_ia32_3dnow.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel330_ia32_3dnow.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel330_ia32_3dnow.s  -fPIC -DPIC -o .libs/nb_kernel330_ia32_3dnow.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel302_ia32_3dnow.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel302_ia32_3dnow.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel302_ia32_3dnow.s  -fPIC -DPIC -o .libs/nb_kernel302_ia32_3dnow.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel310_ia32_3dnow.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel310_ia32_3dnow.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel310_ia32_3dnow.s  -fPIC -DPIC -o .libs/nb_kernel310_ia32_3dnow.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel300_ia32_3dnow.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel300_ia32_3dnow.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel300_ia32_3dnow.s  -fPIC -DPIC -o .libs/nb_kernel300_ia32_3dnow.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel312_ia32_3dnow.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel312_ia32_3dnow.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel312_ia32_3dnow.s  -fPIC -DPIC -o .libs/nb_kernel312_ia32_3dnow.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel331_ia32_3dnow.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel331_ia32_3dnow.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel331_ia32_3dnow.s  -fPIC -DPIC -o .libs/nb_kernel331_ia32_3dnow.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel311_ia32_3dnow.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel311_ia32_3dnow.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel311_ia32_3dnow.s  -fPIC -DPIC -o .libs/nb_kernel311_ia32_3dnow.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel332_ia32_3dnow.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel332_ia32_3dnow.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel332_ia32_3dnow.s  -fPIC -DPIC -o .libs/nb_kernel332_ia32_3dnow.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel_ia32_3dnow_test_asm.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel_ia32_3dnow_test_asm.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel_ia32_3dnow_test_asm.s  -fPIC -DPIC -o .libs/nb_kernel_ia32_3dnow_test_asm.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow'
/bin/sh ../../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_3dnow -I../../../../src  -I../../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel_ia32_3dnow.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel_ia32_3dnow.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_3dnow -I../../../../src -I../../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel_ia32_3dnow.c  -fPIC -DPIC -o .libs/nb_kernel_ia32_3dnow.o
../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel_ia32_3dnow.c: In function 'nb_kernel_ia32_3dnow_test':
../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel_ia32_3dnow.c:174:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
     if(log)
     ^~
../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel_ia32_3dnow.c:177:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
  nb_kernel_ia32_3dnow_present = TRUE;
  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow'
/bin/sh ../../../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o libnb_kernel_ia32_3dnow.la  nb_kernel010_ia32_3dnow.lo nb_kernel030_ia32_3dnow.lo nb_kernel100_ia32_3dnow.lo nb_kernel101_ia32_3dnow.lo nb_kernel102_ia32_3dnow.lo nb_kernel110_ia32_3dnow.lo nb_kernel111_ia32_3dnow.lo nb_kernel112_ia32_3dnow.lo nb_kernel300_ia32_3dnow.lo nb_kernel301_ia32_3dnow.lo nb_kernel302_ia32_3dnow.lo nb_kernel310_ia32_3dnow.lo nb_kernel311_ia32_3dnow.lo nb_kernel312_ia32_3dnow.lo nb_kernel330_ia32_3dnow.lo nb_kernel331_ia32_3dnow.lo nb_kernel332_ia32_3dnow.lo nb_kernel_ia32_3dnow_test_asm.lo nb_kernel_ia32_3dnow.lo  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
ar cru .libs/libnb_kernel_ia32_3dnow.a .libs/nb_kernel010_ia32_3dnow.o .libs/nb_kernel030_ia32_3dnow.o .libs/nb_kernel100_ia32_3dnow.o .libs/nb_kernel101_ia32_3dnow.o .libs/nb_kernel102_ia32_3dnow.o .libs/nb_kernel110_ia32_3dnow.o .libs/nb_kernel111_ia32_3dnow.o .libs/nb_kernel112_ia32_3dnow.o .libs/nb_kernel300_ia32_3dnow.o .libs/nb_kernel301_ia32_3dnow.o .libs/nb_kernel302_ia32_3dnow.o .libs/nb_kernel310_ia32_3dnow.o .libs/nb_kernel311_ia32_3dnow.o .libs/nb_kernel312_ia32_3dnow.o .libs/nb_kernel330_ia32_3dnow.o .libs/nb_kernel331_ia32_3dnow.o .libs/nb_kernel332_ia32_3dnow.o .libs/nb_kernel_ia32_3dnow_test_asm.o .libs/nb_kernel_ia32_3dnow.o
ranlib .libs/libnb_kernel_ia32_3dnow.a
creating libnb_kernel_ia32_3dnow.la
(cd .libs && rm -f libnb_kernel_ia32_3dnow.la && ln -s ../libnb_kernel_ia32_3dnow.la libnb_kernel_ia32_3dnow.la)
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow'
Making all in nb_kernel
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb_common.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb_common.c
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb_outerloop.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb_outerloop.c
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb_innerloop.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb_innerloop.c
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb_interactions.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb_interactions.c
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb_declarations.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb_declarations.c
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb.c
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb_metacode.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb_metacode.c
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -o mknb mknb.o mknb_metacode.o mknb_common.o mknb_declarations.o mknb_outerloop.o mknb_innerloop.o mknb_interactions.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
rm -f kernel-stamp
./mknb  -software_invsqrt   -fortran
>>> Gromacs nonbonded kernel generator (-h for help)
>>> Generating single precision functions in Fortran77.
>>> Using Gromacs software version of 1/sqrt(x).

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make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make  all-am
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src  -I../../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel.lo ../../../../../src/gmxlib/nonbonded/nb_kernel/nb_kernel.c
mkdir .libs
 mpicc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -I../../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel/nb_kernel.c  -fPIC -DPIC -o .libs/nb_kernel.o
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel020_f.lo nb_kernel020_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel020_f.f  -fPIC -o .libs/nb_kernel020_f.o
nb_kernel020_f.f:36:38:

      &                          charge,
                                      1
Warning: Unused dummy argument 'charge' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:37:37:

      &                          facel,
                                     1
Warning: Unused dummy argument 'facel' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:40:34:

      &                          Vc,
                                  1
Warning: Unused dummy argument 'vc' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:196:38:

      &                          charge,
                                      1
Warning: Unused dummy argument 'charge' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:212:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:199:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:208:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:197:37:

      &                          facel,
                                     1
Warning: Unused dummy argument 'facel' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:195:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:192:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:210:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:209:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:207:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:198:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:213:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:211:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:205:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:200:34:

      &                          Vc,
                                  1
Warning: Unused dummy argument 'vc' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:206:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:216:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel101_f.lo nb_kernel101_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel101_f.f  -fPIC -o .libs/nb_kernel101_f.o
nb_kernel101_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:278:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:265:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:274:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:261:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:258:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:276:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:275:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:273:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:264:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:279:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:277:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:268:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:271:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:267:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:269:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:272:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:270:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:282:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel103_f.lo nb_kernel103_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel103_f.f  -fPIC -o .libs/nb_kernel103_f.o
nb_kernel103_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:278:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:265:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:274:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:261:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:258:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:276:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:275:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:273:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:264:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:279:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:277:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:268:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:271:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:267:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:269:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:272:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:270:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:282:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel110_f.lo nb_kernel110_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel110_f.f  -fPIC -o .libs/nb_kernel110_f.o
nb_kernel110_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:218:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:205:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:214:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:201:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:198:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:216:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:215:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:213:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:204:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:219:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:217:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:211:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:212:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:222:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel100_f.lo nb_kernel100_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel100_f.f  -fPIC -o .libs/nb_kernel100_f.o
nb_kernel100_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:202:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:189:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:198:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:185:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:182:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:200:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:199:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:197:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:188:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:203:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:201:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:192:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:195:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:191:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:193:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:196:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:194:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:206:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel010_f.lo nb_kernel010_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel010_f.f  -fPIC -o .libs/nb_kernel010_f.o
nb_kernel010_f.f:36:38:

      &                          charge,
                                      1
Warning: Unused dummy argument 'charge' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:37:37:

      &                          facel,
                                     1
Warning: Unused dummy argument 'facel' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:40:34:

      &                          Vc,
                                  1
Warning: Unused dummy argument 'vc' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:169:38:

      &                          charge,
                                      1
Warning: Unused dummy argument 'charge' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:185:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:172:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:181:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:170:37:

      &                          facel,
                                     1
Warning: Unused dummy argument 'facel' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:168:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:165:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:183:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:182:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:180:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:171:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:186:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:184:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:178:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:173:34:

      &                          Vc,
                                  1
Warning: Unused dummy argument 'vc' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:179:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:189:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel030_f.lo nb_kernel030_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel030_f.f  -fPIC -o .libs/nb_kernel030_f.o
nb_kernel030_f.f:144:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel030_f.f:320:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel030_f.f:36:38:

      &                          charge,
                                      1
Warning: Unused dummy argument 'charge' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:37:37:

      &                          facel,
                                     1
Warning: Unused dummy argument 'facel' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:40:34:

      &                          Vc,
                                  1
Warning: Unused dummy argument 'vc' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:218:38:

      &                          charge,
                                      1
Warning: Unused dummy argument 'charge' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:234:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:221:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:230:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:219:37:

      &                          facel,
                                     1
Warning: Unused dummy argument 'facel' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:217:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:214:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:232:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:231:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:229:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:220:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:235:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:233:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:222:34:

      &                          Vc,
                                  1
Warning: Unused dummy argument 'vc' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:238:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel111_f.lo nb_kernel111_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel111_f.f  -fPIC -o .libs/nb_kernel111_f.o
nb_kernel111_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:294:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:281:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:290:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:277:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:274:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:292:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:291:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:289:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:280:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:295:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:293:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:287:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:288:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:298:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel104_f.lo nb_kernel104_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel104_f.f  -fPIC -o .libs/nb_kernel104_f.o
nb_kernel104_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:444:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:431:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:440:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:427:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:424:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:442:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:441:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:439:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:430:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:445:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:443:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:434:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:437:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:433:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:435:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:438:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:436:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:448:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel120_f.lo nb_kernel120_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel120_f.f  -fPIC -o .libs/nb_kernel120_f.o
nb_kernel120_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:220:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:207:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:216:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:203:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:200:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:218:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:217:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:215:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:206:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:221:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:219:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:213:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:214:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:224:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel112_f.lo nb_kernel112_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel112_f.f  -fPIC -o .libs/nb_kernel112_f.o
nb_kernel112_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:458:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:445:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:454:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:441:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:438:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:456:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:455:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:453:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:444:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:459:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:457:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:451:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:452:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:462:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel113_f.lo nb_kernel113_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel113_f.f  -fPIC -o .libs/nb_kernel113_f.o
nb_kernel113_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:320:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:307:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:316:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:303:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:300:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:318:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:317:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:315:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:306:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:321:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:319:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:313:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:314:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:324:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel102_f.lo nb_kernel102_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel102_f.f  -fPIC -o .libs/nb_kernel102_f.o
nb_kernel102_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:444:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:431:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:440:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:427:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:424:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:442:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:441:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:439:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:430:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:445:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:443:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:434:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:437:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:433:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:435:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:438:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:436:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:448:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel121_f.lo nb_kernel121_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel121_f.f  -fPIC -o .libs/nb_kernel121_f.o
nb_kernel121_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:296:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:283:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:292:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:279:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:276:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:294:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:293:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:291:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:282:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:297:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:295:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:289:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:290:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:300:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel131_f.lo nb_kernel131_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel131_f.f  -fPIC -o .libs/nb_kernel131_f.o
nb_kernel131_f.f:196:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel131_f.f:451:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel131_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:321:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:308:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:317:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:304:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:301:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:319:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:318:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:316:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:307:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:322:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:320:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:325:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel122_f.lo nb_kernel122_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel122_f.f  -fPIC -o .libs/nb_kernel122_f.o
nb_kernel122_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:460:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:447:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:456:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:443:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:440:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:458:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:457:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:455:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:446:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:461:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:459:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:453:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:454:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:464:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel130_f.lo nb_kernel130_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel130_f.f  -fPIC -o .libs/nb_kernel130_f.o
nb_kernel130_f.f:153:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel130_f.f:338:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel130_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:245:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:232:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:241:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:228:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:225:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:243:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:242:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:240:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:231:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:246:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:244:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:249:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel133_f.lo nb_kernel133_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel133_f.f  -fPIC -o .libs/nb_kernel133_f.o
nb_kernel133_f.f:210:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel133_f.f:494:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel133_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:352:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:339:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:348:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:335:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:332:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:350:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:349:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:347:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:338:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:353:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:351:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:356:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel123_f.lo nb_kernel123_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel123_f.f  -fPIC -o .libs/nb_kernel123_f.o
nb_kernel123_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:329:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:316:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:325:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:312:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:309:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:327:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:326:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:324:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:315:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:330:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:328:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:322:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:323:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:333:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel114_f.lo nb_kernel114_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel114_f.f  -fPIC -o .libs/nb_kernel114_f.o
nb_kernel114_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:488:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:475:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:484:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:471:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:468:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:486:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:485:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:483:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:474:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:489:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:487:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:481:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:482:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:492:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel132_f.lo nb_kernel132_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel132_f.f  -fPIC -o .libs/nb_kernel132_f.o
nb_kernel132_f.f:275:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel132_f.f:694:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel132_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:485:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:472:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:481:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:468:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:465:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:483:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:482:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:480:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:471:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:486:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:484:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:489:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel200_f.lo nb_kernel200_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel200_f.f  -fPIC -o .libs/nb_kernel200_f.o
nb_kernel200_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:204:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:200:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:187:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:184:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:202:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:201:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:199:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:205:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:203:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:194:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:197:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:193:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:195:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:198:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:196:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:208:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel124_f.lo nb_kernel124_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel124_f.f  -fPIC -o .libs/nb_kernel124_f.o
nb_kernel124_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:497:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:484:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:493:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:480:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:477:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:495:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:494:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:492:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:483:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:498:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:496:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:490:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:491:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:501:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel210_f.lo nb_kernel210_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel210_f.f  -fPIC -o .libs/nb_kernel210_f.o
nb_kernel210_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:221:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:217:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:204:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:201:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:219:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:218:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:216:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:222:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:220:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:214:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:215:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:225:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel204_f.lo nb_kernel204_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel204_f.f  -fPIC -o .libs/nb_kernel204_f.o
nb_kernel204_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:454:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:450:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:437:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:434:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:452:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:451:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:449:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:455:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:453:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:444:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:447:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:443:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:445:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:448:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:446:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:458:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel201_f.lo nb_kernel201_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel201_f.f  -fPIC -o .libs/nb_kernel201_f.o
nb_kernel201_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:282:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:278:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:265:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:262:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:280:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:279:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:277:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:283:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:281:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:272:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:275:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:271:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:273:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:276:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:274:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:286:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel211_f.lo nb_kernel211_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel211_f.f  -fPIC -o .libs/nb_kernel211_f.o
nb_kernel211_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:299:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:295:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:282:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:279:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:297:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:296:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:294:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:300:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:298:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:292:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:293:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:303:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel134_f.lo nb_kernel134_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel134_f.f  -fPIC -o .libs/nb_kernel134_f.o
nb_kernel134_f.f:294:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel134_f.f:746:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel134_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:520:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:507:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:516:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:503:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:500:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:518:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:517:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:515:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:506:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:521:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:519:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:524:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel203_f.lo nb_kernel203_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel203_f.f  -fPIC -o .libs/nb_kernel203_f.o
nb_kernel203_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:282:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:278:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:265:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:262:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:280:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:279:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:277:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:283:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:281:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:272:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:275:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:271:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:273:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:276:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:274:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:286:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel213_f.lo nb_kernel213_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel213_f.f  -fPIC -o .libs/nb_kernel213_f.o
nb_kernel213_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:324:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:320:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:307:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:304:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:322:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:321:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:319:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:325:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:323:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:317:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:318:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:328:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel212_f.lo nb_kernel212_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel212_f.f  -fPIC -o .libs/nb_kernel212_f.o
nb_kernel212_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:469:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:465:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:452:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:449:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:467:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:466:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:464:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:470:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:468:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:462:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:463:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:473:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel223_f.lo nb_kernel223_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel223_f.f  -fPIC -o .libs/nb_kernel223_f.o
nb_kernel223_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:333:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:329:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:316:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:313:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:331:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:330:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:328:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:334:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:332:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:326:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:327:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:337:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel202_f.lo nb_kernel202_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel202_f.f  -fPIC -o .libs/nb_kernel202_f.o
nb_kernel202_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:454:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:450:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:437:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:434:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:452:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:451:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:449:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:455:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:453:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:444:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:447:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:443:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:445:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:448:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:446:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:458:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel220_f.lo nb_kernel220_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel220_f.f  -fPIC -o .libs/nb_kernel220_f.o
nb_kernel220_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:223:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:219:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:206:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:203:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:221:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:220:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:218:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:224:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:222:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:216:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:217:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:227:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel221_f.lo nb_kernel221_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel221_f.f  -fPIC -o .libs/nb_kernel221_f.o
nb_kernel221_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:301:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:297:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:284:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:281:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:299:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:298:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:296:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:302:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:300:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:294:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:295:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:305:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel230_f.lo nb_kernel230_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel230_f.f  -fPIC -o .libs/nb_kernel230_f.o
nb_kernel230_f.f:155:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel230_f.f:342:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel230_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:247:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:243:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:230:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:227:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:245:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:244:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:242:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:248:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:246:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:251:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel214_f.lo nb_kernel214_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel214_f.f  -fPIC -o .libs/nb_kernel214_f.o
nb_kernel214_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:498:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:494:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:481:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:478:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:496:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:495:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:493:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:499:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:497:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:491:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:492:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:502:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel224_f.lo nb_kernel224_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel224_f.f  -fPIC -o .libs/nb_kernel224_f.o
nb_kernel224_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:507:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:503:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:490:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:487:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:505:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:504:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:502:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:508:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:506:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:500:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:501:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:511:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel300_f.lo nb_kernel300_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel300_f.f  -fPIC -o .libs/nb_kernel300_f.o
nb_kernel300_f.f:139:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel300_f.f:300:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel300_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:219:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:206:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:215:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:202:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:199:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:217:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:216:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:214:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:205:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:220:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:218:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:209:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:208:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:210:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:211:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:223:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel231_f.lo nb_kernel231_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel231_f.f  -fPIC -o .libs/nb_kernel231_f.o
nb_kernel231_f.f:198:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel231_f.f:457:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel231_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:325:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:321:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:308:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:305:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:323:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:322:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:320:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:326:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:324:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:329:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel301_f.lo nb_kernel301_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel301_f.f  -fPIC -o .libs/nb_kernel301_f.o
nb_kernel301_f.f:182:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel301_f.f:209:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel301_f.f:235:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel301_f.f:439:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel301_f.f:454:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel301_f.f:468:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel301_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:321:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:308:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:317:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:304:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:301:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:319:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:318:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:316:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:307:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:322:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:320:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:311:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:310:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:312:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:313:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:325:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel222_f.lo nb_kernel222_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel222_f.f  -fPIC -o .libs/nb_kernel222_f.o
nb_kernel222_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:471:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:467:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:454:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:451:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:469:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:468:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:466:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:472:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:470:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:464:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:465:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:475:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel233_f.lo nb_kernel233_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel233_f.f  -fPIC -o .libs/nb_kernel233_f.o
nb_kernel233_f.f:211:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel233_f.f:499:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel233_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:356:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:352:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:339:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:336:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:354:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:353:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:351:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:357:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:355:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:360:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel232_f.lo nb_kernel232_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel232_f.f  -fPIC -o .libs/nb_kernel232_f.o
nb_kernel232_f.f:277:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel232_f.f:706:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel232_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:495:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:491:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:478:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:475:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:493:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:492:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:490:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:496:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:494:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:499:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel310_f.lo nb_kernel310_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel310_f.f  -fPIC -o .libs/nb_kernel310_f.o
nb_kernel310_f.f:152:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel310_f.f:332:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel310_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:238:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:225:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:234:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:221:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:218:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:236:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:235:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:233:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:224:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:239:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:237:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:242:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel304_f.lo nb_kernel304_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel304_f.f  -fPIC -o .libs/nb_kernel304_f.o
nb_kernel304_f.f:263:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:290:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:317:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:344:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:371:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:398:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:425:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:452:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:479:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:764:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:779:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:794:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:809:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:824:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:839:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:854:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:869:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:884:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:565:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:552:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:561:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:548:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:545:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:563:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:562:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:560:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:551:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:566:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:564:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:555:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:554:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:556:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:557:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:569:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel311_f.lo nb_kernel311_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel311_f.f  -fPIC -o .libs/nb_kernel311_f.o
nb_kernel311_f.f:195:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel311_f.f:227:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel311_f.f:253:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel311_f.f:471:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel311_f.f:490:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel311_f.f:504:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel311_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:340:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:327:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:336:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:323:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:320:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:338:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:337:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:335:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:326:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:341:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:339:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:344:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel303_f.lo nb_kernel303_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel303_f.f  -fPIC -o .libs/nb_kernel303_f.o
nb_kernel303_f.f:182:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel303_f.f:208:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel303_f.f:235:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel303_f.f:439:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel303_f.f:453:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel303_f.f:468:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel303_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:321:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:308:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:317:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:304:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:301:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:319:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:318:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:316:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:307:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:322:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:320:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:311:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:310:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:312:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:313:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:325:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel234_f.lo nb_kernel234_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel234_f.f  -fPIC -o .libs/nb_kernel234_f.o
nb_kernel234_f.f:295:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel234_f.f:757:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel234_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:530:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:526:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:513:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:510:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:528:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:527:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:525:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:531:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:529:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:534:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel302_f.lo nb_kernel302_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel302_f.f  -fPIC -o .libs/nb_kernel302_f.o
nb_kernel302_f.f:263:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:290:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:317:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:344:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:371:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:398:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:425:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:452:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:479:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:764:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:779:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:794:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:809:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:824:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:839:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:854:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:869:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:884:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:565:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:552:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:561:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:548:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:545:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:563:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:562:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:560:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:551:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:566:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:564:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:555:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:554:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:556:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:557:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:569:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel320_f.lo nb_kernel320_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel320_f.f  -fPIC -o .libs/nb_kernel320_f.o
nb_kernel320_f.f:153:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel320_f.f:335:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel320_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:240:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:227:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:236:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:223:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:220:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:238:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:237:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:235:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:226:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:241:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:239:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:244:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel313_f.lo nb_kernel313_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel313_f.f  -fPIC -o .libs/nb_kernel313_f.o
nb_kernel313_f.f:221:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel313_f.f:247:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel313_f.f:274:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel313_f.f:508:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel313_f.f:522:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel313_f.f:537:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel313_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:364:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:351:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:360:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:347:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:344:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:362:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:361:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:359:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:350:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:365:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:363:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:368:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel312_f.lo nb_kernel312_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel312_f.f  -fPIC -o .libs/nb_kernel312_f.o
nb_kernel312_f.f:274:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:306:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:333:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:360:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:387:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:414:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:441:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:468:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:495:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:792:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:811:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:826:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:841:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:856:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:871:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:886:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:901:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:916:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:582:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:569:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:578:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:565:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:562:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:580:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:579:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:577:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:568:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:583:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:581:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:586:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel321_f.lo nb_kernel321_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel321_f.f  -fPIC -o .libs/nb_kernel321_f.o
nb_kernel321_f.f:196:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel321_f.f:229:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel321_f.f:255:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel321_f.f:474:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel321_f.f:494:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel321_f.f:508:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel321_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:342:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:329:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:338:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:325:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:322:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:340:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:339:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:337:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:328:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:343:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:341:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:346:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel330_f.lo nb_kernel330_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel330_f.f  -fPIC -o .libs/nb_kernel330_f.o
nb_kernel330_f.f:150:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel330_f.f:343:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel330_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:252:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:239:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:248:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:235:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:232:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:250:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:249:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:247:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:238:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:253:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:251:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:256:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel323_f.lo nb_kernel323_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel323_f.f  -fPIC -o .libs/nb_kernel323_f.o
nb_kernel323_f.f:230:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel323_f.f:256:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel323_f.f:283:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel323_f.f:526:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel323_f.f:540:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel323_f.f:555:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel323_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:373:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:360:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:369:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:356:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:353:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:371:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:370:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:368:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:359:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:374:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:372:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:377:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel331_f.lo nb_kernel331_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel331_f.f  -fPIC -o .libs/nb_kernel331_f.o
nb_kernel331_f.f:193:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel331_f.f:241:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel331_f.f:267:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel331_f.f:482:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel331_f.f:514:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel331_f.f:528:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel331_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:354:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:341:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:350:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:337:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:334:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:352:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:351:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:349:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:340:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:355:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:353:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:358:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel400_f.lo nb_kernel400_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel400_f.f  -fPIC -o .libs/nb_kernel400_f.o
nb_kernel400_f.f:147:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel400_f.f:317:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel400_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:231:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:218:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:227:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:214:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:211:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:217:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:232:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:230:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:221:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:224:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:220:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:222:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:225:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:223:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:235:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel333_f.lo nb_kernel333_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel333_f.f  -fPIC -o .libs/nb_kernel333_f.o
nb_kernel333_f.f:210:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel333_f.f:249:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel333_f.f:275:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel333_f.f:302:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel333_f.f:534:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel333_f.f:559:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel333_f.f:573:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel333_f.f:588:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel333_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:392:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:379:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:388:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:375:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:372:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:390:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:389:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:387:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:378:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:393:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:391:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:396:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel332_f.lo nb_kernel332_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel332_f.f  -fPIC -o .libs/nb_kernel332_f.o
nb_kernel332_f.f:272:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:320:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:347:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:374:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:401:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:428:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:455:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:482:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:509:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:803:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:835:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:850:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:865:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:880:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:895:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:910:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:925:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:940:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:596:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:583:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:592:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:579:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:576:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:594:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:593:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:591:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:582:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:597:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:595:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:600:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel410_f.lo nb_kernel410_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel410_f.f  -fPIC -o .libs/nb_kernel410_f.o
nb_kernel410_f.f:160:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel410_f.f:349:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel410_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:250:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:237:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:246:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:233:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:230:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:236:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:251:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:249:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:243:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:244:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:254:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel334_f.lo nb_kernel334_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel334_f.f  -fPIC -o .libs/nb_kernel334_f.o
nb_kernel334_f.f:294:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:332:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:359:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:386:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:413:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:440:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:467:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:494:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:521:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:548:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:864:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:888:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:903:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:918:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:933:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:948:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:963:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:978:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:993:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:1008:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:638:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:625:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:634:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:621:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:618:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:636:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:635:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:633:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:624:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:639:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:637:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:642:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src  -I../../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel_f77sync.lo ../../../../../src/gmxlib/nonbonded/nb_kernel/nb_kernel_f77sync.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -I../../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel/nb_kernel_f77sync.c  -fPIC -DPIC -o .libs/nb_kernel_f77sync.o
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel314_f.lo nb_kernel314_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel314_f.f  -fPIC -o .libs/nb_kernel314_f.o
nb_kernel314_f.f:304:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:331:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:358:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:385:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:412:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:439:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:466:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:493:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:520:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:837:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:852:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:867:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:882:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:897:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:912:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:927:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:942:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:957:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:610:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:597:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:606:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:593:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:590:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:608:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:607:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:605:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:596:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:611:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:609:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:614:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel420_f.lo nb_kernel420_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel420_f.f  -fPIC -o .libs/nb_kernel420_f.o
nb_kernel420_f.f:161:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel420_f.f:352:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel420_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:252:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:239:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:248:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:235:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:232:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:238:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:253:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:251:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:245:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:246:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:256:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel430_f.lo nb_kernel430_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel430_f.f  -fPIC -o .libs/nb_kernel430_f.o
nb_kernel430_f.f:158:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel430_f.f:177:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel430_f.f:365:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel430_f.f:379:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel430_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:269:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:256:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:265:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:252:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:249:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:255:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:270:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:268:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:273:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel322_f.lo nb_kernel322_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel322_f.f  -fPIC -o .libs/nb_kernel322_f.o
nb_kernel322_f.f:275:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:308:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:335:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:362:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:389:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:416:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:443:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:470:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:497:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:795:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:815:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:830:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:845:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:860:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:875:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:890:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:905:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:920:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:584:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:571:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:580:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:567:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:564:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:582:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:581:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:579:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:570:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:585:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:583:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:588:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel324_f.lo nb_kernel324_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel324_f.f  -fPIC -o .libs/nb_kernel324_f.o
nb_kernel324_f.f:313:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:340:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:367:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:394:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:421:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:448:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:475:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:502:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:529:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:855:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:870:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:885:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:900:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:915:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:930:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:945:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:960:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:975:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:619:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:606:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:615:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:602:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:599:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:617:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:616:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:614:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:605:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:620:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:618:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:623:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o libnb_kernel.la  nb_kernel.lo nb_kernel010_f.lo nb_kernel020_f.lo nb_kernel030_f.lo nb_kernel100_f.lo nb_kernel101_f.lo nb_kernel102_f.lo nb_kernel103_f.lo nb_kernel104_f.lo nb_kernel110_f.lo nb_kernel111_f.lo nb_kernel112_f.lo nb_kernel113_f.lo nb_kernel114_f.lo nb_kernel120_f.lo nb_kernel121_f.lo nb_kernel122_f.lo nb_kernel123_f.lo nb_kernel124_f.lo nb_kernel130_f.lo nb_kernel131_f.lo nb_kernel132_f.lo nb_kernel133_f.lo nb_kernel134_f.lo nb_kernel200_f.lo nb_kernel201_f.lo nb_kernel202_f.lo nb_kernel203_f.lo nb_kernel204_f.lo nb_kernel210_f.lo nb_kernel211_f.lo nb_kernel212_f.lo nb_kernel213_f.lo nb_kernel214_f.lo nb_kernel220_f.lo nb_kernel221_f.lo nb_kernel222_f.lo nb_kernel223_f.lo nb_kernel224_f.lo nb_kernel230_f.lo nb_kernel231_f.lo nb_kernel232_f.lo nb_kernel233_f.lo nb_kernel234_f.lo nb_kernel300_f.lo nb_kernel301_f.lo nb_kernel302_f.lo nb_kernel303_f.lo nb_kernel304_f.lo nb_kernel310_f.lo nb_kernel311_f.lo nb_kernel312_f.lo nb_kernel313_f.lo nb_kernel314_f.lo nb_kernel320_f.lo nb_kernel321_f.lo nb_kernel322_f.lo nb_kernel323_f.lo nb_kernel324_f.lo nb_kernel330_f.lo nb_kernel331_f.lo nb_kernel332_f.lo nb_kernel333_f.lo nb_kernel334_f.lo nb_kernel400_f.lo nb_kernel410_f.lo nb_kernel420_f.lo nb_kernel430_f.lo  nb_kernel_f77sync.lo -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
ar cru .libs/libnb_kernel.a .libs/nb_kernel.o .libs/nb_kernel010_f.o .libs/nb_kernel020_f.o .libs/nb_kernel030_f.o .libs/nb_kernel100_f.o .libs/nb_kernel101_f.o .libs/nb_kernel102_f.o .libs/nb_kernel103_f.o .libs/nb_kernel104_f.o .libs/nb_kernel110_f.o .libs/nb_kernel111_f.o .libs/nb_kernel112_f.o .libs/nb_kernel113_f.o .libs/nb_kernel114_f.o .libs/nb_kernel120_f.o .libs/nb_kernel121_f.o .libs/nb_kernel122_f.o .libs/nb_kernel123_f.o .libs/nb_kernel124_f.o .libs/nb_kernel130_f.o .libs/nb_kernel131_f.o .libs/nb_kernel132_f.o .libs/nb_kernel133_f.o .libs/nb_kernel134_f.o .libs/nb_kernel200_f.o .libs/nb_kernel201_f.o .libs/nb_kernel202_f.o .libs/nb_kernel203_f.o .libs/nb_kernel204_f.o .libs/nb_kernel210_f.o .libs/nb_kernel211_f.o .libs/nb_kernel212_f.o .libs/nb_kernel213_f.o .libs/nb_kernel214_f.o .libs/nb_kernel220_f.o .libs/nb_kernel221_f.o .libs/nb_kernel222_f.o .libs/nb_kernel223_f.o .libs/nb_kernel224_f.o .libs/nb_kernel230_f.o .libs/nb_kernel231_f.o .libs/nb_kernel232_f.o .libs/nb_kernel233_f.o .libs/nb_kernel234_f.o .libs/nb_kernel300_f.o .libs/nb_kernel301_f.o .libs/nb_kernel302_f.o .libs/nb_kernel303_f.o .libs/nb_kernel304_f.o .libs/nb_kernel310_f.o .libs/nb_kernel311_f.o .libs/nb_kernel312_f.o .libs/nb_kernel313_f.o .libs/nb_kernel314_f.o .libs/nb_kernel320_f.o .libs/nb_kernel321_f.o .libs/nb_kernel322_f.o .libs/nb_kernel323_f.o .libs/nb_kernel324_f.o .libs/nb_kernel330_f.o .libs/nb_kernel331_f.o .libs/nb_kernel332_f.o .libs/nb_kernel333_f.o .libs/nb_kernel334_f.o .libs/nb_kernel400_f.o .libs/nb_kernel410_f.o .libs/nb_kernel420_f.o .libs/nb_kernel430_f.o .libs/nb_kernel_f77sync.o
ranlib .libs/libnb_kernel.a
creating libnb_kernel.la
(cd .libs && rm -f libnb_kernel.la && ln -s ../libnb_kernel.la libnb_kernel.la)
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/nonbonded -I../../../src  -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_generic.lo ../../../../src/gmxlib/nonbonded/nb_generic.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/nonbonded -I../../../src -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/nonbonded/nb_generic.c  -fPIC -DPIC -o .libs/nb_generic.o
../../../../src/gmxlib/nonbonded/nb_generic.c: In function 'gmx_nb_generic_kernel':
../../../../src/gmxlib/nonbonded/nb_generic.c:82:16: warning: unused variable 'shift' [-Wunused-variable]
  int *         shift;
                ^~~~~
../../../../src/gmxlib/nonbonded/nb_generic.c:62:25: warning: unused variable 'gbtabscale' [-Wunused-variable]
     real          facel,gbtabscale;
                         ^~~~~~~~~~
../../../../src/gmxlib/nonbonded/nb_generic.c:61:19: warning: unused variable 'nri' [-Wunused-variable]
     int           nri,ntype,table_nelements,icoul,ivdw;
                   ^~~
In file included from ../../../../src/gmxlib/nonbonded/nb_generic.c:43:
At top level:
../../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../../include/vec.h:121,
                 from ../../../../src/gmxlib/nonbonded/nb_generic.c:43:
../../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/nonbonded -I../../../src  -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_free_energy.lo ../../../../src/gmxlib/nonbonded/nb_free_energy.c
mkdir .libs
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/nonbonded -I../../../src -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/nonbonded/nb_free_energy.c  -fPIC -DPIC -o .libs/nb_free_energy.o
../../../../src/gmxlib/nonbonded/nb_free_energy.c: In function 'gmx_nb_free_energy_kernel':
../../../../src/gmxlib/nonbonded/nb_free_energy.c:100:25: warning: unused variable 'H' [-Wunused-variable]
     real          Y,F,G,H,Fp,Geps,Heps2,eps,eps2,VV,FF;
                         ^
../../../../src/gmxlib/nonbonded/nb_free_energy.c:100:23: warning: unused variable 'G' [-Wunused-variable]
     real          Y,F,G,H,Fp,Geps,Heps2,eps,eps2,VV,FF;
                       ^
../../../../src/gmxlib/nonbonded/nb_free_energy.c:89:19: warning: unused variable 'rinvsix' [-Wunused-variable]
     real          rinvsix;
                   ^~~~~~~
../../../../src/gmxlib/nonbonded/nb_free_energy.c:86:27: warning: unused variable 'vcoul' [-Wunused-variable]
     real          qqA,qqB,vcoul,vctot,krsq;
                           ^~~~~
In file included from ../../../../src/gmxlib/nonbonded/nb_free_energy.c:42:
At top level:
../../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../../include/vec.h:121,
                 from ../../../../src/gmxlib/nonbonded/nb_free_energy.c:42:
../../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/nonbonded -I../../../src  -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nonbonded.lo ../../../../src/gmxlib/nonbonded/nonbonded.c
mkdir .libs
mkdir: cannot create directory '.libs': File exists
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/nonbonded -I../../../src -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/nonbonded/nonbonded.c  -fPIC -DPIC -o .libs/nonbonded.o
../../../../src/gmxlib/nonbonded/nonbonded.c: In function 'do_nonbonded':
../../../../src/gmxlib/nonbonded/nonbonded.c:283:18: warning: unused variable 'fp' [-Wunused-variable]
  FILE *          fp;
                  ^~
../../../../src/gmxlib/nonbonded/nonbonded.c:281:18: warning: unused variable 'bWater' [-Wunused-variable]
  bool            bWater;
                  ^~~~~~
../../../../src/gmxlib/nonbonded/nonbonded.c:279:43: warning: unused variable 'sz' [-Wunused-variable]
  int             n,n0,n1,i,i0,i1,nrnb_ind,sz;
                                           ^~
../../../../src/gmxlib/nonbonded/nonbonded.c: In function 'do_listed_vdw_q':
../../../../src/gmxlib/nonbonded/nonbonded.c:547:15: warning: unused variable 'tmplist' [-Wunused-variable]
     t_nblist  tmplist;
               ^~~~~~~
../../../../src/gmxlib/nonbonded/nonbonded.c:538:25: warning: unused variable 'i2' [-Wunused-variable]
     int       i0=0,i1=1,i2=2;
                         ^~
In file included from ../../../../src/gmxlib/nonbonded/nonbonded.c:53:
At top level:
../../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../../src/gmxlib/nonbonded/nonbonded.c:50:
../../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../../include/vec.h:121,
                 from ../../../../src/gmxlib/nonbonded/nonbonded.c:50:
../../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded'
/bin/sh ../../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o libnonbonded.la  nonbonded.lo nb_free_energy.lo nb_generic.lo nb_kernel_ia32_sse/libnb_kernel_ia32_sse.la                 nb_kernel_ia32_3dnow/libnb_kernel_ia32_3dnow.la                     	 nb_kernel/libnb_kernel.la			 -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
rm -fr .libs/libnonbonded.lax
mkdir .libs/libnonbonded.lax
rm -fr .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a
mkdir .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a
(cd .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a && ar x /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse/.libs/libnb_kernel_ia32_sse.a)
rm -fr .libs/libnonbonded.lax/libnb_kernel_ia32_3dnow.a
mkdir .libs/libnonbonded.lax/libnb_kernel_ia32_3dnow.a
(cd .libs/libnonbonded.lax/libnb_kernel_ia32_3dnow.a && ar x /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/.libs/libnb_kernel_ia32_3dnow.a)
rm -fr .libs/libnonbonded.lax/libnb_kernel.a
mkdir .libs/libnonbonded.lax/libnb_kernel.a
(cd .libs/libnonbonded.lax/libnb_kernel.a && ar x /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel/.libs/libnb_kernel.a)
ar cru .libs/libnonbonded.a .libs/nonbonded.o .libs/nb_free_energy.o .libs/nb_generic.o  .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel_ia32_sse_test_asm.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel430_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel410_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel400_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel334_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel333_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel332_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel331_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel330_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel314_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel313_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel312_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel311_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel310_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel304_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel303_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel302_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel301_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel300_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel234_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel233_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel232_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel231_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel230_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel214_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel213_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel212_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel211_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel210_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel204_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel203_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel202_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel201_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel200_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel134_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel133_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel132_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel131_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel130_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel114_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel113_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel112_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel111_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel110_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel104_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel103_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel102_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel101_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel100_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel030_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel010_ia32_sse.o  .libs/libnonbonded.lax/libnb_kernel_ia32_3dnow.a/nb_kernel_ia32_3dnow.o .libs/libnonbonded.lax/libnb_kernel_ia32_3dnow.a/nb_kernel_ia32_3dnow_test_asm.o .libs/libnonbonded.lax/libnb_kernel_ia32_3dnow.a/nb_kernel332_ia32_3dnow.o .libs/libnonbonded.lax/libnb_kernel_ia32_3dnow.a/nb_kernel331_ia32_3dnow.o .libs/libnonbonded.lax/libnb_kernel_ia32_3dnow.a/nb_kernel330_ia32_3dnow.o .libs/libnonbonded.lax/libnb_kernel_ia32_3dnow.a/nb_kernel312_ia32_3dnow.o .libs/libnonbonded.lax/libnb_kernel_ia32_3dnow.a/nb_kernel311_ia32_3dnow.o .libs/libnonbonded.lax/libnb_kernel_ia32_3dnow.a/nb_kernel310_ia32_3dnow.o .libs/libnonbonded.lax/libnb_kernel_ia32_3dnow.a/nb_kernel302_ia32_3dnow.o .libs/libnonbonded.lax/libnb_kernel_ia32_3dnow.a/nb_kernel301_ia32_3dnow.o .libs/libnonbonded.lax/libnb_kernel_ia32_3dnow.a/nb_kernel300_ia32_3dnow.o .libs/libnonbonded.lax/libnb_kernel_ia32_3dnow.a/nb_kernel112_ia32_3dnow.o .libs/libnonbonded.lax/libnb_kernel_ia32_3dnow.a/nb_kernel111_ia32_3dnow.o .libs/libnonbonded.lax/libnb_kernel_ia32_3dnow.a/nb_kernel110_ia32_3dnow.o .libs/libnonbonded.lax/libnb_kernel_ia32_3dnow.a/nb_kernel102_ia32_3dnow.o .libs/libnonbonded.lax/libnb_kernel_ia32_3dnow.a/nb_kernel101_ia32_3dnow.o .libs/libnonbonded.lax/libnb_kernel_ia32_3dnow.a/nb_kernel100_ia32_3dnow.o .libs/libnonbonded.lax/libnb_kernel_ia32_3dnow.a/nb_kernel030_ia32_3dnow.o .libs/libnonbonded.lax/libnb_kernel_ia32_3dnow.a/nb_kernel010_ia32_3dnow.o  .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel_f77sync.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel430_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel420_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel410_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel400_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel334_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel333_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel332_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel331_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel330_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel324_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel323_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel322_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel321_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel320_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel314_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel313_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel312_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel311_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel310_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel304_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel303_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel302_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel301_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel300_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel234_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel233_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel232_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel231_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel230_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel224_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel223_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel222_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel221_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel220_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel214_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel213_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel212_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel211_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel210_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel204_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel203_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel202_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel201_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel200_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel134_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel133_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel132_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel131_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel130_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel124_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel123_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel122_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel121_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel120_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel114_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel113_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel112_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel111_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel110_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel104_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel103_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel102_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel101_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel100_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel030_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel020_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel010_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel.o 
ranlib .libs/libnonbonded.a
rm -fr .libs/libnonbonded.lax
creating libnonbonded.la
(cd .libs && rm -f libnonbonded.la && ln -s ../libnonbonded.la libnonbonded.la)
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded'
Making all in gmx_blas
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o drot.lo ../../../../src/gmxlib/gmx_blas/drot.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/drot.c  -fPIC -DPIC -o .libs/drot.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dcopy.lo ../../../../src/gmxlib/gmx_blas/dcopy.c
mkdir .libs
mkdir: cannot create directory '.libs': File exists
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dcopy.c  -fPIC -DPIC -o .libs/dcopy.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dasum.lo ../../../../src/gmxlib/gmx_blas/dasum.c
mkdir .libs
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dasum.c  -fPIC -DPIC -o .libs/dasum.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dswap.lo ../../../../src/gmxlib/gmx_blas/dswap.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dswap.c  -fPIC -DPIC -o .libs/dswap.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dsyr2.lo ../../../../src/gmxlib/gmx_blas/dsyr2.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dsyr2.c  -fPIC -DPIC -o .libs/dsyr2.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dger.lo ../../../../src/gmxlib/gmx_blas/dger.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dger.c  -fPIC -DPIC -o .libs/dger.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dtrmm.lo ../../../../src/gmxlib/gmx_blas/dtrmm.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dtrmm.c  -fPIC -DPIC -o .libs/dtrmm.o
../../../../src/gmxlib/gmx_blas/dtrmm.c: In function 'dtrmm_':
../../../../src/gmxlib/gmx_blas/dtrmm.c:32:9: warning: variable 'nrowa' set but not used [-Wunused-but-set-variable]
     int nrowa;
         ^~~~~
../../../../src/gmxlib/gmx_blas/dtrmm.c:29:20: warning: variable 'info' set but not used [-Wunused-but-set-variable]
     int i__, j, k, info;
                    ^~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o ddot.lo ../../../../src/gmxlib/gmx_blas/ddot.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/ddot.c  -fPIC -DPIC -o .libs/ddot.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dgemm.lo ../../../../src/gmxlib/gmx_blas/dgemm.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dgemm.c  -fPIC -DPIC -o .libs/dgemm.o
../../../../src/gmxlib/gmx_blas/dgemm.c: In function 'dgemm_':
../../../../src/gmxlib/gmx_blas/dgemm.c:27:19: warning: variable 'nrowb' set but not used [-Wunused-but-set-variable]
   int nrowa,ncola,nrowb;
                   ^~~~~
../../../../src/gmxlib/gmx_blas/dgemm.c:27:13: warning: variable 'ncola' set but not used [-Wunused-but-set-variable]
   int nrowa,ncola,nrowb;
             ^~~~~
../../../../src/gmxlib/gmx_blas/dgemm.c:27:7: warning: variable 'nrowa' set but not used [-Wunused-but-set-variable]
   int nrowa,ncola,nrowb;
       ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o daxpy.lo ../../../../src/gmxlib/gmx_blas/daxpy.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/daxpy.c  -fPIC -DPIC -o .libs/daxpy.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dnrm2.lo ../../../../src/gmxlib/gmx_blas/dnrm2.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dnrm2.c  -fPIC -DPIC -o .libs/dnrm2.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dgemv.lo ../../../../src/gmxlib/gmx_blas/dgemv.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dgemv.c  -fPIC -DPIC -o .libs/dgemv.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dscal.lo ../../../../src/gmxlib/gmx_blas/dscal.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dscal.c  -fPIC -DPIC -o .libs/dscal.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dtrsm.lo ../../../../src/gmxlib/gmx_blas/dtrsm.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dtrsm.c  -fPIC -DPIC -o .libs/dtrsm.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o scopy.lo ../../../../src/gmxlib/gmx_blas/scopy.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/scopy.c  -fPIC -DPIC -o .libs/scopy.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o sasum.lo ../../../../src/gmxlib/gmx_blas/sasum.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/sasum.c  -fPIC -DPIC -o .libs/sasum.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dtrmv.lo ../../../../src/gmxlib/gmx_blas/dtrmv.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dtrmv.c  -fPIC -DPIC -o .libs/dtrmv.o
../../../../src/gmxlib/gmx_blas/dtrmv.c: In function 'dtrmv_':
../../../../src/gmxlib/gmx_blas/dtrmv.c:18:29: warning: variable 'info' set but not used [-Wunused-but-set-variable]
     int i__, j, ix, jx, kx, info;
                             ^~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o idamax.lo ../../../../src/gmxlib/gmx_blas/idamax.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/idamax.c  -fPIC -DPIC -o .libs/idamax.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dsymv.lo ../../../../src/gmxlib/gmx_blas/dsymv.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dsymv.c  -fPIC -DPIC -o .libs/dsymv.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o srot.lo ../../../../src/gmxlib/gmx_blas/srot.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/srot.c  -fPIC -DPIC -o .libs/srot.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o sgemm.lo ../../../../src/gmxlib/gmx_blas/sgemm.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/sgemm.c  -fPIC -DPIC -o .libs/sgemm.o
../../../../src/gmxlib/gmx_blas/sgemm.c: In function 'sgemm_':
../../../../src/gmxlib/gmx_blas/sgemm.c:26:19: warning: variable 'nrowb' set but not used [-Wunused-but-set-variable]
   int nrowa,ncola,nrowb;
                   ^~~~~
../../../../src/gmxlib/gmx_blas/sgemm.c:26:13: warning: variable 'ncola' set but not used [-Wunused-but-set-variable]
   int nrowa,ncola,nrowb;
             ^~~~~
../../../../src/gmxlib/gmx_blas/sgemm.c:26:7: warning: variable 'nrowa' set but not used [-Wunused-but-set-variable]
   int nrowa,ncola,nrowb;
       ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o sswap.lo ../../../../src/gmxlib/gmx_blas/sswap.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/sswap.c  -fPIC -DPIC -o .libs/sswap.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o ssyr2.lo ../../../../src/gmxlib/gmx_blas/ssyr2.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/ssyr2.c  -fPIC -DPIC -o .libs/ssyr2.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o sger.lo ../../../../src/gmxlib/gmx_blas/sger.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/sger.c  -fPIC -DPIC -o .libs/sger.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dsyr2k.lo ../../../../src/gmxlib/gmx_blas/dsyr2k.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dsyr2k.c  -fPIC -DPIC -o .libs/dsyr2k.o
../../../../src/gmxlib/gmx_blas/dsyr2k.c: In function 'dsyr2k_':
../../../../src/gmxlib/gmx_blas/dsyr2k.c:23:7: warning: variable 'nrowa' set but not used [-Wunused-but-set-variable]
   int nrowa;
       ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o sdot.lo ../../../../src/gmxlib/gmx_blas/sdot.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/sdot.c  -fPIC -DPIC -o .libs/sdot.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o saxpy.lo ../../../../src/gmxlib/gmx_blas/saxpy.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/saxpy.c  -fPIC -DPIC -o .libs/saxpy.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o snrm2.lo ../../../../src/gmxlib/gmx_blas/snrm2.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/snrm2.c  -fPIC -DPIC -o .libs/snrm2.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o sgemv.lo ../../../../src/gmxlib/gmx_blas/sgemv.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/sgemv.c  -fPIC -DPIC -o .libs/sgemv.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o sscal.lo ../../../../src/gmxlib/gmx_blas/sscal.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/sscal.c  -fPIC -DPIC -o .libs/sscal.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o strsm.lo ../../../../src/gmxlib/gmx_blas/strsm.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/strsm.c  -fPIC -DPIC -o .libs/strsm.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o isamax.lo ../../../../src/gmxlib/gmx_blas/isamax.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/isamax.c  -fPIC -DPIC -o .libs/isamax.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o strmm.lo ../../../../src/gmxlib/gmx_blas/strmm.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/strmm.c  -fPIC -DPIC -o .libs/strmm.o
../../../../src/gmxlib/gmx_blas/strmm.c: In function 'strmm_':
../../../../src/gmxlib/gmx_blas/strmm.c:31:9: warning: variable 'nrowa' set but not used [-Wunused-but-set-variable]
     int nrowa;
         ^~~~~
../../../../src/gmxlib/gmx_blas/strmm.c:28:20: warning: variable 'info' set but not used [-Wunused-but-set-variable]
     int i__, j, k, info;
                    ^~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o ssyr2k.lo ../../../../src/gmxlib/gmx_blas/ssyr2k.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/ssyr2k.c  -fPIC -DPIC -o .libs/ssyr2k.o
../../../../src/gmxlib/gmx_blas/ssyr2k.c: In function 'ssyr2k_':
../../../../src/gmxlib/gmx_blas/ssyr2k.c:22:7: warning: variable 'nrowa' set but not used [-Wunused-but-set-variable]
   int nrowa;
       ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o ssymv.lo ../../../../src/gmxlib/gmx_blas/ssymv.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/ssymv.c  -fPIC -DPIC -o .libs/ssymv.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o strmv.lo ../../../../src/gmxlib/gmx_blas/strmv.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/strmv.c  -fPIC -DPIC -o .libs/strmv.o
../../../../src/gmxlib/gmx_blas/strmv.c: In function 'strmv_':
../../../../src/gmxlib/gmx_blas/strmv.c:18:29: warning: variable 'info' set but not used [-Wunused-but-set-variable]
     int i__, j, ix, jx, kx, info;
                             ^~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
/bin/sh ../../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o libblas.la  dasum.lo dcopy.lo dgemm.lo dger.lo drot.lo dswap.lo dsyr2.lo dtrmm.lo dtrsm.lo daxpy.lo ddot.lo dgemv.lo dnrm2.lo dscal.lo dsymv.lo dsyr2k.lo dtrmv.lo idamax.lo sasum.lo scopy.lo sgemm.lo sger.lo srot.lo sswap.lo ssyr2.lo strmm.lo strsm.lo saxpy.lo sdot.lo sgemv.lo snrm2.lo sscal.lo ssymv.lo ssyr2k.lo strmv.lo isamax.lo  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
ar cru .libs/libblas.a .libs/dasum.o .libs/dcopy.o .libs/dgemm.o .libs/dger.o .libs/drot.o .libs/dswap.o .libs/dsyr2.o .libs/dtrmm.o .libs/dtrsm.o .libs/daxpy.o .libs/ddot.o .libs/dgemv.o .libs/dnrm2.o .libs/dscal.o .libs/dsymv.o .libs/dsyr2k.o .libs/dtrmv.o .libs/idamax.o .libs/sasum.o .libs/scopy.o .libs/sgemm.o .libs/sger.o .libs/srot.o .libs/sswap.o .libs/ssyr2.o .libs/strmm.o .libs/strsm.o .libs/saxpy.o .libs/sdot.o .libs/sgemv.o .libs/snrm2.o .libs/sscal.o .libs/ssymv.o .libs/ssyr2k.o .libs/strmv.o .libs/isamax.o
ranlib .libs/libblas.a
creating libblas.la
(cd .libs && rm -f libblas.la && ln -s ../libblas.la libblas.la)
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
Making all in gmx_lapack
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dgetf2.lo ../../../../src/gmxlib/gmx_lapack/dgetf2.c
mkdir .libs
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dgetf2.c  -fPIC -DPIC -o .libs/dgetf2.o
../../../../src/gmxlib/gmx_lapack/dgetf2.c: In function 'dgetf2_':
../../../../src/gmxlib/gmx_lapack/dgetf2.c:17:10: warning: variable 'one' set but not used [-Wunused-but-set-variable]
   double one,minusone;
          ^~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dlamrg.lo ../../../../src/gmxlib/gmx_lapack/dlamrg.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlamrg.c  -fPIC -DPIC -o .libs/dlamrg.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dlarnv.lo ../../../../src/gmxlib/gmx_lapack/dlarnv.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlarnv.c  -fPIC -DPIC -o .libs/dlarnv.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dorgl2.lo ../../../../src/gmxlib/gmx_lapack/dorgl2.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dorgl2.c  -fPIC -DPIC -o .libs/dorgl2.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dlasda.lo ../../../../src/gmxlib/gmx_lapack/dlasda.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasda.c  -fPIC -DPIC -o .libs/dlasda.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dlasq6.lo ../../../../src/gmxlib/gmx_lapack/dlasq6.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasq6.c  -fPIC -DPIC -o .libs/dlasq6.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dlasd0.lo ../../../../src/gmxlib/gmx_lapack/dlasd0.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasd0.c  -fPIC -DPIC -o .libs/dlasd0.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dormqr.lo ../../../../src/gmxlib/gmx_lapack/dormqr.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dormqr.c  -fPIC -DPIC -o .libs/dormqr.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dlange.lo ../../../../src/gmxlib/gmx_lapack/dlange.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlange.c  -fPIC -DPIC -o .libs/dlange.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dgetrf.lo ../../../../src/gmxlib/gmx_lapack/dgetrf.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dgetrf.c  -fPIC -DPIC -o .libs/dgetrf.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dbdsdc.lo ../../../../src/gmxlib/gmx_lapack/dbdsdc.c
mkdir .libs
mkdir: cannot create directory '.libs': File exists
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dbdsdc.c  -fPIC -DPIC -o .libs/dbdsdc.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dlasd1.lo ../../../../src/gmxlib/gmx_lapack/dlasd1.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasd1.c  -fPIC -DPIC -o .libs/dlasd1.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dtrtri.lo ../../../../src/gmxlib/gmx_lapack/dtrtri.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dtrtri.c  -fPIC -DPIC -o .libs/dtrtri.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dormtr.lo ../../../../src/gmxlib/gmx_lapack/dormtr.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dormtr.c  -fPIC -DPIC -o .libs/dormtr.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dlasdq.lo ../../../../src/gmxlib/gmx_lapack/dlasdq.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasdq.c  -fPIC -DPIC -o .libs/dlasdq.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dorglq.lo ../../../../src/gmxlib/gmx_lapack/dorglq.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dorglq.c  -fPIC -DPIC -o .libs/dorglq.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dgebd2.lo ../../../../src/gmxlib/gmx_lapack/dgebd2.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dgebd2.c  -fPIC -DPIC -o .libs/dgebd2.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dlasr.lo ../../../../src/gmxlib/gmx_lapack/dlasr.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasr.c  -fPIC -DPIC -o .libs/dlasr.o
../../../../src/gmxlib/gmx_lapack/dlasr.c: In function 'dlasr_':
../../../../src/gmxlib/gmx_lapack/dlasr.c:21:17: warning: variable 'info' set but not used [-Wunused-but-set-variable]
     int i__, j, info;
                 ^~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dbdsqr.lo ../../../../src/gmxlib/gmx_lapack/dbdsqr.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dbdsqr.c  -fPIC -DPIC -o .libs/dbdsqr.o
../../../../src/gmxlib/gmx_lapack/dbdsqr.c: In function 'dbdsqr_':
../../../../src/gmxlib/gmx_lapack/dbdsqr.c:61:12: warning: unused variable 'ftmp' [-Wunused-variable]
     double ftmp;
            ^~~~
../../../../src/gmxlib/gmx_lapack/dbdsqr.c:59:12: warning: variable 'sminlo' set but not used [-Wunused-but-set-variable]
     double sminlo, tolmul;
            ^~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dlanst.lo ../../../../src/gmxlib/gmx_lapack/dlanst.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlanst.c  -fPIC -DPIC -o .libs/dlanst.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasd2.c  -fPIC -DPIC -o .libs/dlasd2.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasrt.c  -fPIC -DPIC -o .libs/dlasrt.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasdt.c  -fPIC -DPIC -o .libs/dlasdt.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dorgqr.c  -fPIC -DPIC -o .libs/dorgqr.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlabrd.c  -fPIC -DPIC -o .libs/dlabrd.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlapy2.c  -fPIC -DPIC -o .libs/dlapy2.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dgebrd.c  -fPIC -DPIC -o .libs/dgebrd.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlacpy.c  -fPIC -DPIC -o .libs/dlacpy.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dsytrd.c  -fPIC -DPIC -o .libs/dsytrd.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlaset.c  -fPIC -DPIC -o .libs/dlaset.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlassq.c  -fPIC -DPIC -o .libs/dlassq.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dorm2l.c  -fPIC -DPIC -o .libs/dorm2l.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dgelq2.c  -fPIC -DPIC -o .libs/dgelq2.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlae2.c  -fPIC -DPIC -o .libs/dlae2.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dstegr.c  -fPIC -DPIC -o .libs/dstegr.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dtrti2.c  -fPIC -DPIC -o .libs/dtrti2.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasd3.c  -fPIC -DPIC -o .libs/dlasd3.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasq1.c  -fPIC -DPIC -o .libs/dlasq1.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dgetri.c  -fPIC -DPIC -o .libs/dgetri.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dlasv2.lo ../../../../src/gmxlib/gmx_lapack/dlasv2.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasv2.c  -fPIC -DPIC -o .libs/dlasv2.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dorm2r.lo ../../../../src/gmxlib/gmx_lapack/dorm2r.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dorm2r.c  -fPIC -DPIC -o .libs/dorm2r.o
../../../../src/gmxlib/gmx_lapack/dorm2r.c: In function 'dorm2r_':
../../../../src/gmxlib/gmx_lapack/dorm2r.c:19:42: warning: variable 'nq' set but not used [-Wunused-but-set-variable]
     int i__, i1, i2, i3, ic, jc, mi, ni, nq;
                                          ^~
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlarf.c  -fPIC -DPIC -o .libs/dlarf.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dgelqf.c  -fPIC -DPIC -o .libs/dgelqf.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dstein.lo ../../../../src/gmxlib/gmx_lapack/dstein.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dstein.c  -fPIC -DPIC -o .libs/dstein.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlartg.c  -fPIC -DPIC -o .libs/dlartg.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlaebz.c  -fPIC -DPIC -o .libs/dlaebz.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasd5.c  -fPIC -DPIC -o .libs/dlasd5.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlaswp.c  -fPIC -DPIC -o .libs/dlaswp.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dormbr.c  -fPIC -DPIC -o .libs/dormbr.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dgeqr2.c  -fPIC -DPIC -o .libs/dgeqr2.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasd4.c  -fPIC -DPIC -o .libs/dlasd4.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlaed6.c  -fPIC -DPIC -o .libs/dlaed6.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlaruv.c  -fPIC -DPIC -o .libs/dlaruv.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasq2.c  -fPIC -DPIC -o .libs/dlasq2.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dsterf.c  -fPIC -DPIC -o .libs/dsterf.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasd6.c  -fPIC -DPIC -o .libs/dlasd6.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dstevr.c  -fPIC -DPIC -o .libs/dstevr.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlatrd.c  -fPIC -DPIC -o .libs/dlatrd.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dgeqrf.c  -fPIC -DPIC -o .libs/dgeqrf.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlagtf.c  -fPIC -DPIC -o .libs/dlagtf.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dorml2.c  -fPIC -DPIC -o .libs/dorml2.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlas2.c  -fPIC -DPIC -o .libs/dlas2.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlarfg.c  -fPIC -DPIC -o .libs/dlarfg.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasq3.c  -fPIC -DPIC -o .libs/dlasq3.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dormlq.c  -fPIC -DPIC -o .libs/dormlq.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasd7.c  -fPIC -DPIC -o .libs/dlasd7.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlarfb.c  -fPIC -DPIC -o .libs/dlarfb.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dlasq4.lo ../../../../src/gmxlib/gmx_lapack/dlasq4.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasq4.c  -fPIC -DPIC -o .libs/dlasq4.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dorg2r.lo ../../../../src/gmxlib/gmx_lapack/dorg2r.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dorg2r.c  -fPIC -DPIC -o .libs/dorg2r.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dsytd2.lo ../../../../src/gmxlib/gmx_lapack/dsytd2.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dsytd2.c  -fPIC -DPIC -o .libs/dsytd2.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dlagts.lo ../../../../src/gmxlib/gmx_lapack/dlagts.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlagts.c  -fPIC -DPIC -o .libs/dlagts.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dlarft.lo ../../../../src/gmxlib/gmx_lapack/dlarft.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlarft.c  -fPIC -DPIC -o .libs/dlarft.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dgesdd.lo ../../../../src/gmxlib/gmx_lapack/dgesdd.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dgesdd.c  -fPIC -DPIC -o .libs/dgesdd.o
../../../../src/gmxlib/gmx_lapack/dgesdd.c: In function 'dgesdd_':
../../../../src/gmxlib/gmx_lapack/dgesdd.c:40:9: warning: variable 'wntqas' set but not used [-Wunused-but-set-variable]
     int wntqas, lquery;
         ^~~~~~
../../../../src/gmxlib/gmx_lapack/dgesdd.c:38:9: warning: variable 'minwrk' set but not used [-Wunused-but-set-variable]
     int minwrk, ldwrku, maxwrk, ldwkvt;
         ^~~~~~
../../../../src/gmxlib/gmx_lapack/dgesdd.c:35:16: warning: variable 'wntqo' set but not used [-Wunused-but-set-variable]
     int wntqn, wntqo, wntqs;
                ^~~~~
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dorgbr.lo ../../../../src/gmxlib/gmx_lapack/dorgbr.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dorgbr.c  -fPIC -DPIC -o .libs/dorgbr.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dlascl.lo ../../../../src/gmxlib/gmx_lapack/dlascl.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlascl.c  -fPIC -DPIC -o .libs/dlascl.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dormql.lo ../../../../src/gmxlib/gmx_lapack/dormql.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dormql.c  -fPIC -DPIC -o .libs/dormql.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dlasq5.lo ../../../../src/gmxlib/gmx_lapack/dlasq5.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasq5.c  -fPIC -DPIC -o .libs/dlasq5.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dlaev2.lo ../../../../src/gmxlib/gmx_lapack/dlaev2.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlaev2.c  -fPIC -DPIC -o .libs/dlaev2.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dlasd8.lo ../../../../src/gmxlib/gmx_lapack/dlasd8.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasd8.c  -fPIC -DPIC -o .libs/dlasd8.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dlasrt2.lo ../../../../src/gmxlib/gmx_lapack/dlasrt2.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasrt2.c  -fPIC -DPIC -o .libs/dlasrt2.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dsyevr.lo ../../../../src/gmxlib/gmx_lapack/dsyevr.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dsyevr.c  -fPIC -DPIC -o .libs/dsyevr.o
../../../../src/gmxlib/gmx_lapack/dsyevr.c: In function 'dsyevr_':
../../../../src/gmxlib/gmx_lapack/dsyevr.c:36:12: warning: variable 'abstll' set but not used [-Wunused-but-set-variable]
     double abstll, bignum;
            ^~~~~~
../../../../src/gmxlib/gmx_lapack/dsyevr.c:33:17: warning: variable 'ieeeok' set but not used [-Wunused-but-set-variable]
     int iscale, ieeeok, indibl, indifl;
                 ^~~~~~
../../../../src/gmxlib/gmx_lapack/dsyevr.c:21:22: warning: variable 'vuu' set but not used [-Wunused-but-set-variable]
     double eps, vll, vuu, tmp1;
                      ^~~
../../../../src/gmxlib/gmx_lapack/dsyevr.c:21:17: warning: variable 'vll' set but not used [-Wunused-but-set-variable]
     double eps, vll, vuu, tmp1;
                 ^~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dlansy.lo ../../../../src/gmxlib/gmx_lapack/dlansy.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlansy.c  -fPIC -DPIC -o .libs/dlansy.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dlarrfx.lo ../../../../src/gmxlib/gmx_lapack/dlarrfx.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlarrfx.c  -fPIC -DPIC -o .libs/dlarrfx.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dsteqr.lo ../../../../src/gmxlib/gmx_lapack/dsteqr.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dsteqr.c  -fPIC -DPIC -o .libs/dsteqr.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o sbdsdc.lo ../../../../src/gmxlib/gmx_lapack/sbdsdc.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sbdsdc.c  -fPIC -DPIC -o .libs/sbdsdc.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o sgetf2.lo ../../../../src/gmxlib/gmx_lapack/sgetf2.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sgetf2.c  -fPIC -DPIC -o .libs/sgetf2.o
../../../../src/gmxlib/gmx_lapack/sgetf2.c: In function 'sgetf2_':
../../../../src/gmxlib/gmx_lapack/sgetf2.c:17:9: warning: variable 'one' set but not used [-Wunused-but-set-variable]
   float one,minusone;
         ^~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o slamrg.lo ../../../../src/gmxlib/gmx_lapack/slamrg.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slamrg.c  -fPIC -DPIC -o .libs/slamrg.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dlar1vx.lo ../../../../src/gmxlib/gmx_lapack/dlar1vx.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlar1vx.c  -fPIC -DPIC -o .libs/dlar1vx.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o slasd0.lo ../../../../src/gmxlib/gmx_lapack/slasd0.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasd0.c  -fPIC -DPIC -o .libs/slasd0.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dlarrbx.lo ../../../../src/gmxlib/gmx_lapack/dlarrbx.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlarrbx.c  -fPIC -DPIC -o .libs/dlarrbx.o
../../../../src/gmxlib/gmx_lapack/dlarrbx.c: In function 'dlarrbx_':
../../../../src/gmxlib/gmx_lapack/dlarrbx.c:36:33: warning: variable 'error' set but not used [-Wunused-but-set-variable]
     double right, width, dplus, error;
                                 ^~~~~
../../../../src/gmxlib/gmx_lapack/dlarrbx.c:34:12: warning: variable 'eps' set but not used [-Wunused-but-set-variable]
     double eps, tmp, left;
            ^~~
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slarnv.c  -fPIC -DPIC -o .libs/slarnv.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasq6.c  -fPIC -DPIC -o .libs/slasq6.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlarrex.c  -fPIC -DPIC -o .libs/dlarrex.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sorgl2.c  -fPIC -DPIC -o .libs/sorgl2.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sormqr.c  -fPIC -DPIC -o .libs/sormqr.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlarrvx.c  -fPIC -DPIC -o .libs/dlarrvx.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sgetrf.c  -fPIC -DPIC -o .libs/sgetrf.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasd1.c  -fPIC -DPIC -o .libs/slasd1.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sorglq.c  -fPIC -DPIC -o .libs/sorglq.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sormtr.c  -fPIC -DPIC -o .libs/sormtr.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slange.c  -fPIC -DPIC -o .libs/slange.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasr.c  -fPIC -DPIC -o .libs/slasr.o
../../../../src/gmxlib/gmx_lapack/slasr.c: In function 'slasr_':
../../../../src/gmxlib/gmx_lapack/slasr.c:21:17: warning: variable 'info' set but not used [-Wunused-but-set-variable]
     int i__, j, info;
                 ^~~~
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slapy2.c  -fPIC -DPIC -o .libs/slapy2.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o sbdsqr.lo ../../../../src/gmxlib/gmx_lapack/sbdsqr.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sbdsqr.c  -fPIC -DPIC -o .libs/sbdsqr.o
../../../../src/gmxlib/gmx_lapack/sbdsqr.c: In function 'sbdsqr_':
../../../../src/gmxlib/gmx_lapack/sbdsqr.c:61:11: warning: unused variable 'ftmp' [-Wunused-variable]
     float ftmp;
           ^~~~
../../../../src/gmxlib/gmx_lapack/sbdsqr.c:59:11: warning: variable 'sminlo' set but not used [-Wunused-but-set-variable]
     float sminlo, tolmul;
           ^~~~~~
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sgebrd.c  -fPIC -DPIC -o .libs/sgebrd.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasd2.c  -fPIC -DPIC -o .libs/slasd2.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slassq.c  -fPIC -DPIC -o .libs/slassq.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sorm2l.c  -fPIC -DPIC -o .libs/sorm2l.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o slaset.lo ../../../../src/gmxlib/gmx_lapack/slaset.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slaset.c  -fPIC -DPIC -o .libs/slaset.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sstebz.c  -fPIC -DPIC -o .libs/sstebz.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o slae2.lo ../../../../src/gmxlib/gmx_lapack/slae2.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slae2.c  -fPIC -DPIC -o .libs/slae2.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sgelq2.c  -fPIC -DPIC -o .libs/sgelq2.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sgetri.c  -fPIC -DPIC -o .libs/sgetri.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasq1.c  -fPIC -DPIC -o .libs/slasq1.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasv2.c  -fPIC -DPIC -o .libs/slasv2.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/strti2.c  -fPIC -DPIC -o .libs/strti2.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sorm2r.c  -fPIC -DPIC -o .libs/sorm2r.o
../../../../src/gmxlib/gmx_lapack/sorm2r.c: In function 'sorm2r_':
../../../../src/gmxlib/gmx_lapack/sorm2r.c:19:42: warning: variable 'nq' set but not used [-Wunused-but-set-variable]
     int i__, i1, i2, i3, ic, jc, mi, ni, nq;
                                          ^~
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sormbr.c  -fPIC -DPIC -o .libs/sormbr.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o sgeqr2.lo ../../../../src/gmxlib/gmx_lapack/sgeqr2.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sgeqr2.c  -fPIC -DPIC -o .libs/sgeqr2.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o slasd5.lo ../../../../src/gmxlib/gmx_lapack/slasd5.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasd5.c  -fPIC -DPIC -o .libs/slasd5.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o slaed6.lo ../../../../src/gmxlib/gmx_lapack/slaed6.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slaed6.c  -fPIC -DPIC -o .libs/slaed6.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o slaruv.lo ../../../../src/gmxlib/gmx_lapack/slaruv.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slaruv.c  -fPIC -DPIC -o .libs/slaruv.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o slasq3.lo ../../../../src/gmxlib/gmx_lapack/slasq3.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasq3.c  -fPIC -DPIC -o .libs/slasq3.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o slasd6.lo ../../../../src/gmxlib/gmx_lapack/slasd6.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasd6.c  -fPIC -DPIC -o .libs/slasd6.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o ssterf.lo ../../../../src/gmxlib/gmx_lapack/ssterf.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/ssterf.c  -fPIC -DPIC -o .libs/ssterf.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o slasd4.lo ../../../../src/gmxlib/gmx_lapack/slasd4.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasd4.c  -fPIC -DPIC -o .libs/slasd4.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o sorml2.lo ../../../../src/gmxlib/gmx_lapack/sorml2.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sorml2.c  -fPIC -DPIC -o .libs/sorml2.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o slasq2.lo ../../../../src/gmxlib/gmx_lapack/slasq2.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasq2.c  -fPIC -DPIC -o .libs/slasq2.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o sstevr.lo ../../../../src/gmxlib/gmx_lapack/sstevr.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sstevr.c  -fPIC -DPIC -o .libs/sstevr.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o slarfg.lo ../../../../src/gmxlib/gmx_lapack/slarfg.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slarfg.c  -fPIC -DPIC -o .libs/slarfg.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o slatrd.lo ../../../../src/gmxlib/gmx_lapack/slatrd.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slatrd.c  -fPIC -DPIC -o .libs/slatrd.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o slas2.lo ../../../../src/gmxlib/gmx_lapack/slas2.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slas2.c  -fPIC -DPIC -o .libs/slas2.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o sgeqrf.lo ../../../../src/gmxlib/gmx_lapack/sgeqrf.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sgeqrf.c  -fPIC -DPIC -o .libs/sgeqrf.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o slarfb.lo ../../../../src/gmxlib/gmx_lapack/slarfb.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slarfb.c  -fPIC -DPIC -o .libs/slarfb.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o slagtf.lo ../../../../src/gmxlib/gmx_lapack/slagtf.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slagtf.c  -fPIC -DPIC -o .libs/slagtf.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o sorg2r.lo ../../../../src/gmxlib/gmx_lapack/sorg2r.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sorg2r.c  -fPIC -DPIC -o .libs/sorg2r.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o sormlq.lo ../../../../src/gmxlib/gmx_lapack/sormlq.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sormlq.c  -fPIC -DPIC -o .libs/sormlq.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o ssytd2.lo ../../../../src/gmxlib/gmx_lapack/ssytd2.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/ssytd2.c  -fPIC -DPIC -o .libs/ssytd2.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o slarft.lo ../../../../src/gmxlib/gmx_lapack/slarft.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slarft.c  -fPIC -DPIC -o .libs/slarft.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o slascl.lo ../../../../src/gmxlib/gmx_lapack/slascl.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slascl.c  -fPIC -DPIC -o .libs/slascl.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o slasq5.lo ../../../../src/gmxlib/gmx_lapack/slasq5.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasq5.c  -fPIC -DPIC -o .libs/slasq5.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o sgesdd.lo ../../../../src/gmxlib/gmx_lapack/sgesdd.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sgesdd.c  -fPIC -DPIC -o .libs/sgesdd.o
../../../../src/gmxlib/gmx_lapack/sgesdd.c: In function 'sgesdd_':
../../../../src/gmxlib/gmx_lapack/sgesdd.c:40:9: warning: variable 'wntqas' set but not used [-Wunused-but-set-variable]
     int wntqas, lquery;
         ^~~~~~
../../../../src/gmxlib/gmx_lapack/sgesdd.c:38:9: warning: variable 'minwrk' set but not used [-Wunused-but-set-variable]
     int minwrk, ldwrku, maxwrk, ldwkvt;
         ^~~~~~
../../../../src/gmxlib/gmx_lapack/sgesdd.c:35:16: warning: variable 'wntqo' set but not used [-Wunused-but-set-variable]
     int wntqn, wntqo, wntqs;
                ^~~~~
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o slasrt2.lo ../../../../src/gmxlib/gmx_lapack/slasrt2.c
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o slansy.lo ../../../../src/gmxlib/gmx_lapack/slansy.c
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o ssyevr.lo ../../../../src/gmxlib/gmx_lapack/ssyevr.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/ssyevr.c  -fPIC -DPIC -o .libs/ssyevr.o
../../../../src/gmxlib/gmx_lapack/ssyevr.c: In function 'ssyevr_':
../../../../src/gmxlib/gmx_lapack/ssyevr.c:36:11: warning: variable 'abstll' set but not used [-Wunused-but-set-variable]
     float abstll, bignum;
           ^~~~~~
../../../../src/gmxlib/gmx_lapack/ssyevr.c:33:17: warning: variable 'ieeeok' set but not used [-Wunused-but-set-variable]
     int iscale, ieeeok, indibl, indifl;
                 ^~~~~~
../../../../src/gmxlib/gmx_lapack/ssyevr.c:21:21: warning: variable 'vuu' set but not used [-Wunused-but-set-variable]
     float eps, vll, vuu, tmp1;
                     ^~~
../../../../src/gmxlib/gmx_lapack/ssyevr.c:21:16: warning: variable 'vll' set but not used [-Wunused-but-set-variable]
     float eps, vll, vuu, tmp1;
                ^~~
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o slarrbx.lo ../../../../src/gmxlib/gmx_lapack/slarrbx.c
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../../../../src/gmxlib/gmx_lapack/slarrbx.c: In function 'slarrbx_':
../../../../src/gmxlib/gmx_lapack/slarrbx.c:36:32: warning: variable 'error' set but not used [-Wunused-but-set-variable]
     float right, width, dplus, error;
                                ^~~~~
../../../../src/gmxlib/gmx_lapack/slarrbx.c:34:11: warning: variable 'eps' set but not used [-Wunused-but-set-variable]
     float eps, tmp, left;
           ^~~
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make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack'
/bin/sh ../../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o liblapack.la  dbdsdc.lo dgetf2.lo dlamrg.lo dlarnv.lo dlasd0.lo dlasda.lo dlasq6.lo dorgl2.lo dormqr.lo dbdsqr.lo dgetrf.lo dlange.lo dlasd1.lo dtrtri.lo dlasdq.lo dlasr.lo dorglq.lo dormtr.lo dgebd2.lo dlabrd.lo dlanst.lo dlasd2.lo dlasdt.lo dlasrt.lo dorgqr.lo dstebz.lo dgebrd.lo dsytrd.lo dlacpy.lo dlapy2.lo dlasd3.lo dlaset.lo dlassq.lo dorm2l.lo dgetrs.lo dstegr.lo dgelq2.lo dlae2.lo dlasd4.lo dlasq1.lo dtrti2.lo dgetri.lo dlasv2.lo dorm2r.lo dstein.lo dgelqf.lo dlaebz.lo dlarf.lo dlartg.lo dlasd5.lo dlasq2.lo dlaswp.lo dormbr.lo dsterf.lo dgeqr2.lo dlaed6.lo dlarfb.lo dlaruv.lo dlasd6.lo dlasq3.lo dlatrd.lo dorml2.lo dstevr.lo dgeqrf.lo dlagtf.lo dlarfg.lo dlas2.lo dlasd7.lo dlasq4.lo dorg2r.lo dormlq.lo dsytd2.lo dgesdd.lo dlagts.lo dlarft.lo dlascl.lo dlasd8.lo dlasq5.lo dorgbr.lo dormql.lo dlaev2.lo dsteqr.lo dsyevr.lo dlasrt2.lo dlansy.lo dlar1vx.lo dlarrbx.lo dlarrex.lo dlarrfx.lo dlarrvx.lo sbdsdc.lo sgetf2.lo slamrg.lo slarnv.lo slasd0.lo slasda.lo slasq6.lo sorgl2.lo sormqr.lo sbdsqr.lo sgetrf.lo slange.lo slasd1.lo ssytrd.lo slasdq.lo slasr.lo sorglq.lo sormtr.lo sgebd2.lo slabrd.lo slanst.lo slasd2.lo slasdt.lo slasrt.lo sorgqr.lo sstebz.lo sgebrd.lo sgetrs.lo slacpy.lo slapy2.lo slasd3.lo slaset.lo slassq.lo sorm2l.lo sgetri.lo sstegr.lo sgelq2.lo slae2.lo slasd4.lo slasq1.lo strti2.lo strtri.lo slasv2.lo sorm2r.lo sstein.lo sgelqf.lo slaebz.lo slarf.lo slartg.lo slasd5.lo slasq2.lo slaswp.lo sormbr.lo ssterf.lo sgeqr2.lo slaed6.lo slarfb.lo slaruv.lo slasd6.lo slasq3.lo slatrd.lo sorml2.lo sstevr.lo sgeqrf.lo slagtf.lo slarfg.lo slas2.lo slasd7.lo slasq4.lo sorg2r.lo sormlq.lo ssytd2.lo sgesdd.lo slagts.lo slarft.lo slascl.lo slasd8.lo slasq5.lo sorgbr.lo sormql.lo slaev2.lo ssteqr.lo ssyevr.lo slasrt2.lo slansy.lo slar1vx.lo slarrbx.lo slarrex.lo slarrfx.lo slarrvx.lo ilasrt2.lo  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
ar cru .libs/liblapack.a .libs/dbdsdc.o .libs/dgetf2.o .libs/dlamrg.o .libs/dlarnv.o .libs/dlasd0.o .libs/dlasda.o .libs/dlasq6.o .libs/dorgl2.o .libs/dormqr.o .libs/dbdsqr.o .libs/dgetrf.o .libs/dlange.o .libs/dlasd1.o .libs/dtrtri.o .libs/dlasdq.o .libs/dlasr.o .libs/dorglq.o .libs/dormtr.o .libs/dgebd2.o .libs/dlabrd.o .libs/dlanst.o .libs/dlasd2.o .libs/dlasdt.o .libs/dlasrt.o .libs/dorgqr.o .libs/dstebz.o .libs/dgebrd.o .libs/dsytrd.o .libs/dlacpy.o .libs/dlapy2.o .libs/dlasd3.o .libs/dlaset.o .libs/dlassq.o .libs/dorm2l.o .libs/dgetrs.o .libs/dstegr.o .libs/dgelq2.o .libs/dlae2.o .libs/dlasd4.o .libs/dlasq1.o .libs/dtrti2.o .libs/dgetri.o .libs/dlasv2.o .libs/dorm2r.o .libs/dstein.o .libs/dgelqf.o .libs/dlaebz.o .libs/dlarf.o .libs/dlartg.o .libs/dlasd5.o .libs/dlasq2.o .libs/dlaswp.o .libs/dormbr.o .libs/dsterf.o .libs/dgeqr2.o .libs/dlaed6.o .libs/dlarfb.o .libs/dlaruv.o .libs/dlasd6.o .libs/dlasq3.o .libs/dlatrd.o .libs/dorml2.o .libs/dstevr.o .libs/dgeqrf.o .libs/dlagtf.o .libs/dlarfg.o .libs/dlas2.o .libs/dlasd7.o .libs/dlasq4.o .libs/dorg2r.o .libs/dormlq.o .libs/dsytd2.o .libs/dgesdd.o .libs/dlagts.o .libs/dlarft.o .libs/dlascl.o .libs/dlasd8.o .libs/dlasq5.o .libs/dorgbr.o .libs/dormql.o .libs/dlaev2.o .libs/dsteqr.o .libs/dsyevr.o .libs/dlasrt2.o .libs/dlansy.o .libs/dlar1vx.o .libs/dlarrbx.o .libs/dlarrex.o .libs/dlarrfx.o .libs/dlarrvx.o .libs/sbdsdc.o .libs/sgetf2.o .libs/slamrg.o .libs/slarnv.o .libs/slasd0.o .libs/slasda.o .libs/slasq6.o .libs/sorgl2.o .libs/sormqr.o .libs/sbdsqr.o .libs/sgetrf.o .libs/slange.o .libs/slasd1.o .libs/ssytrd.o .libs/slasdq.o .libs/slasr.o .libs/sorglq.o .libs/sormtr.o .libs/sgebd2.o .libs/slabrd.o .libs/slanst.o .libs/slasd2.o .libs/slasdt.o .libs/slasrt.o .libs/sorgqr.o .libs/sstebz.o .libs/sgebrd.o .libs/sgetrs.o .libs/slacpy.o .libs/slapy2.o .libs/slasd3.o .libs/slaset.o .libs/slassq.o .libs/sorm2l.o .libs/sgetri.o .libs/sstegr.o .libs/sgelq2.o .libs/slae2.o .libs/slasd4.o .libs/slasq1.o .libs/strti2.o .libs/strtri.o .libs/slasv2.o .libs/sorm2r.o .libs/sstein.o .libs/sgelqf.o .libs/slaebz.o .libs/slarf.o .libs/slartg.o .libs/slasd5.o .libs/slasq2.o .libs/slaswp.o .libs/sormbr.o .libs/ssterf.o .libs/sgeqr2.o .libs/slaed6.o .libs/slarfb.o .libs/slaruv.o .libs/slasd6.o .libs/slasq3.o .libs/slatrd.o .libs/sorml2.o .libs/sstevr.o .libs/sgeqrf.o .libs/slagtf.o .libs/slarfg.o .libs/slas2.o .libs/slasd7.o .libs/slasq4.o .libs/sorg2r.o .libs/sormlq.o .libs/ssytd2.o .libs/sgesdd.o .libs/slagts.o .libs/slarft.o .libs/slascl.o .libs/slasd8.o .libs/slasq5.o .libs/sorgbr.o .libs/sormql.o .libs/slaev2.o .libs/ssteqr.o .libs/ssyevr.o .libs/slasrt2.o .libs/slansy.o .libs/slar1vx.o .libs/slarrbx.o .libs/slarrex.o .libs/slarrfx.o .libs/slarrvx.o .libs/ilasrt2.o
ranlib .libs/liblapack.a
creating liblapack.la
(cd .libs && rm -f liblapack.la && ln -s ../liblapack.la liblapack.la)
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o calcgrid.lo ../../../src/gmxlib/calcgrid.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/calcgrid.c  -fPIC -DPIC -o .libs/calcgrid.o
../../../src/gmxlib/calcgrid.c: In function 'calc_grid':
../../../src/gmxlib/calcgrid.c:89:8: warning: unused variable 'tmp' [-Wunused-variable]
   real tmp[3];
        ^~~
../../../src/gmxlib/calcgrid.c:86:10: warning: unused variable 'j' [-Wunused-variable]
   int  i,j,nmin[DIM];
          ^
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o calch.lo ../../../src/gmxlib/calch.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/calch.c  -fPIC -DPIC -o .libs/calch.o
../../../src/gmxlib/calch.c: In function 'gen_waterhydrogen':
../../../src/gmxlib/calch.c:81:14: warning: unused variable 'kkk' [-Wunused-variable]
   rvec       kkk;
              ^~~
In file included from ../../../src/gmxlib/calch.c:43:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/gmxlib/calch.c:42:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o copyrite.lo ../../../src/gmxlib/copyrite.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/copyrite.c  -fPIC -DPIC -o .libs/copyrite.o
../../../src/gmxlib/copyrite.c: In function 'cool_quote':
../../../src/gmxlib/copyrite.c:181:9: warning: unused variable 's' [-Wunused-variable]
   char *s,*ptr;
         ^
../../../src/gmxlib/copyrite.c: In function 'please_cite':
../../../src/gmxlib/copyrite.c:469:8: warning: unused variable 'j' [-Wunused-variable]
   int  j,index;
        ^
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/copyrite.c:53:
At top level:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o 3dview.lo ../../../src/gmxlib/3dview.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/3dview.c  -fPIC -DPIC -o .libs/3dview.o
../../../src/gmxlib/3dview.c: In function 'reset_view':
../../../src/gmxlib/3dview.c:282:8: warning: unused variable 'i' [-Wunused-variable]
   int  i;
        ^
In file included from ../../../src/gmxlib/3dview.c:47:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/3dview.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o atomprop.lo ../../../src/gmxlib/atomprop.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/atomprop.c  -fPIC -DPIC -o .libs/atomprop.o
In file included from ../../../src/gmxlib/atomprop.c:52:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/gmxlib/atomprop.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o checkpoint.lo ../../../src/gmxlib/checkpoint.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/checkpoint.c  -fPIC -DPIC -o .libs/checkpoint.o
../../../src/gmxlib/checkpoint.c: In function 'do_cpte_ints':
../../../src/gmxlib/checkpoint.c:305:16: warning: unused variable 'i' [-Wunused-variable]
     int  nf,dt,i;
                ^
../../../src/gmxlib/checkpoint.c: In function 'do_cpte_doubles':
../../../src/gmxlib/checkpoint.c:371:16: warning: unused variable 'i' [-Wunused-variable]
     int  nf,dt,i;
                ^
../../../src/gmxlib/checkpoint.c: In function 'do_cpt_header':
../../../src/gmxlib/checkpoint.c:534:10: warning: unused variable 'i' [-Wunused-variable]
     int  i;
          ^
../../../src/gmxlib/checkpoint.c: In function 'do_cpt_files':
../../../src/gmxlib/checkpoint.c:743:9: warning: unused variable 'mask' [-Wunused-variable]
  off_t  mask = 0xFFFFFFFFL;
         ^~~~
../../../src/gmxlib/checkpoint.c: In function 'write_checkpoint':
../../../src/gmxlib/checkpoint.c:837:30: warning: unused variable 'i' [-Wunused-variable]
     int  flags_eks,flags_enh,i;
                              ^
../../../src/gmxlib/checkpoint.c:833:29: warning: unused variable 'flag_64bit' [-Wunused-variable]
     int  nppnodes,npmenodes,flag_64bit;
                             ^~~~~~~~~~
../../../src/gmxlib/checkpoint.c: In function 'read_checkpoint':
../../../src/gmxlib/checkpoint.c:1254:40: warning: left-hand operand of comma expression has no effect [-Wunused-value]
             if (outputfiles[i].filename,outputfiles[i].offset < 0)
                                        ^
../../../src/gmxlib/checkpoint.c:1036:7: warning: unused variable 'filename' [-Wunused-variable]
  char filename[STRLEN];
       ^~~~~~~~
../../../src/gmxlib/checkpoint.c:1033:15: warning: unused variable 'j' [-Wunused-variable]
     int  fp,i,j;
               ^
../../../src/gmxlib/checkpoint.c: In function 'list_checkpoint':
../../../src/gmxlib/checkpoint.c:1421:12: warning: unused variable 'j' [-Wunused-variable]
     int  i,j;
            ^
../../../src/gmxlib/checkpoint.c:1421:10: warning: unused variable 'i' [-Wunused-variable]
     int  i,j;
          ^
../../../src/gmxlib/checkpoint.c:1420:10: warning: unused variable 'indent' [-Wunused-variable]
     int  indent;
          ^~~~~~
In file included from ../../../src/gmxlib/checkpoint.c:34:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/checkpoint.c:34:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/checkpoint.c:32:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o ewald_util.lo ../../../src/gmxlib/ewald_util.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/ewald_util.c  -fPIC -DPIC -o .libs/ewald_util.o
In file included from ../../../src/gmxlib/ewald_util.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/ewald_util.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_fatal.lo ../../../src/gmxlib/gmx_fatal.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/gmx_fatal.c  -fPIC -DPIC -o .libs/gmx_fatal.o
../../../src/gmxlib/gmx_fatal.c:226:13: warning: 'fatal_error' defined but not used [-Wunused-function]
 static void fatal_error(int f_errno,const char *fmt,...)
             ^~~~~~~~~~~
../../../src/gmxlib/gmx_fatal.c:115:13: warning: 'bputi' defined but not used [-Wunused-function]
 static void bputi(char *msg,int *len,int val,int radix,int fld,bool bNeg)
             ^~~~~
In file included from ../../../src/gmxlib/gmx_fatal.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/gmx_fatal.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o confio.lo ../../../src/gmxlib/confio.c
mkdir .libs
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/confio.c  -fPIC -DPIC -o .libs/confio.o
../../../src/gmxlib/confio.c: In function 'read_espresso_conf':
../../../src/gmxlib/confio.c:448:21: warning: unused variable 'npar' [-Wunused-variable]
   int  natoms,level,npar,r,nprop,p,i,m;
                     ^~~~
../../../src/gmxlib/confio.c:448:8: warning: unused variable 'natoms' [-Wunused-variable]
   int  natoms,level,npar,r,nprop,p,i,m;
        ^~~~~~
../../../src/gmxlib/confio.c: In function 'read_stx_conf':
../../../src/gmxlib/confio.c:1298:14: warning: unused variable 'd' [-Wunused-variable]
   real       d,r1,r2;
              ^
../../../src/gmxlib/confio.c:1293:14: warning: unused variable 'buf' [-Wunused-variable]
   char       buf[256];
              ^~~
At top level:
../../../src/gmxlib/confio.c:864:13: warning: 'get_conf' defined but not used [-Wunused-function]
 static void get_conf(FILE *in, char *title, int *natoms,
             ^~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/confio.c:59:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/gmxlib/confio.c:57:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/gmxlib/confio.c:54:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/gmxlib/confio.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/confio.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
../../../src/gmxlib/confio.c: In function 'write_hconf_box':
../../../src/gmxlib/confio.c:983:20: warning: '%d' directive writing between 2 and 10 bytes into a region of size between 7 and 75 [-Wformat-overflow=]
     sprintf(format,"%%%d.%df%%%d.%df%%%d.%df"
                    ^~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/gmxlib/confio.c:984:17: note: format string is defined here
      "%%%d.%df%%%d.%df%%%d.%df%%%d.%df%%%d.%df%%%d.%df\n",
                 ^~
../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [10, 2147483647]
     sprintf(format,"%%%d.%df%%%d.%df%%%d.%df"
                    ^~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [5, 2147483647]
../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [10, 2147483647]
../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [5, 2147483647]
../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [10, 2147483647]
../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [5, 2147483647]
../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [10, 2147483647]
../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [5, 2147483647]
../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [10, 2147483647]
../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [5, 2147483647]
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/gmxlib/confio.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 56 and 209 bytes into a destination of size 100
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o do_fit.lo ../../../src/gmxlib/do_fit.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/do_fit.c  -fPIC -DPIC -o .libs/do_fit.o
../../../src/gmxlib/do_fit.c: In function 'calc_fit_R':
../../../src/gmxlib/do_fit.c:103:18: warning: unused variable 'm' [-Wunused-variable]
   int    c,r,n,j,m,i,irot,s;
                  ^
../../../src/gmxlib/do_fit.c: In function 'do_fit_ndim':
../../../src/gmxlib/do_fit.c:214:10: warning: unused variable 'i' [-Wunused-variable]
   int    i,j,m,r,c;
          ^
In file included from ../../../src/gmxlib/do_fit.c:44:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/gmxlib/do_fit.c:40:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o ffscanf.lo ../../../src/gmxlib/ffscanf.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/ffscanf.c  -fPIC -DPIC -o .libs/ffscanf.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o disre.lo ../../../src/gmxlib/disre.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/disre.c  -fPIC -DPIC -o .libs/disre.o
../../../src/gmxlib/disre.c: In function 'init_disres':
../../../src/gmxlib/disre.c:62:19: warning: variable 'ip' set but not used [-Wunused-but-set-variable]
     t_iparams    *ip;
                   ^~
../../../src/gmxlib/disre.c:61:26: warning: unused variable 'i' [-Wunused-variable]
     int          fa,nmol,i,npair,np;
                          ^
../../../src/gmxlib/disre.c: In function 'calc_disres_R_6':
../../../src/gmxlib/disre.c:217:23: warning: unused variable 'dt' [-Wunused-variable]
     ivec        it,jt,dt;
                       ^~
../../../src/gmxlib/disre.c:217:20: warning: unused variable 'jt' [-Wunused-variable]
     ivec        it,jt,dt;
                    ^~
../../../src/gmxlib/disre.c:217:17: warning: unused variable 'it' [-Wunused-variable]
     ivec        it,jt,dt;
                 ^~
../../../src/gmxlib/disre.c:212:37: warning: unused variable 'm' [-Wunused-variable]
     int         fa,res,i,pair,ki,kj,m;
                                     ^
../../../src/gmxlib/disre.c:212:34: warning: unused variable 'kj' [-Wunused-variable]
     int         fa,res,i,pair,ki,kj,m;
                                  ^~
../../../src/gmxlib/disre.c:212:31: warning: unused variable 'ki' [-Wunused-variable]
     int         fa,res,i,pair,ki,kj,m;
                               ^~
../../../src/gmxlib/disre.c:212:24: warning: unused variable 'i' [-Wunused-variable]
     int         fa,res,i,pair,ki,kj,m;
                        ^
../../../src/gmxlib/disre.c: In function 'ta_disres':
../../../src/gmxlib/disre.c:338:20: warning: unused variable 'jt' [-Wunused-variable]
     ivec        it,jt,dt;
                    ^~
../../../src/gmxlib/disre.c:338:17: warning: unused variable 'it' [-Wunused-variable]
     ivec        it,jt,dt;
                 ^~
In file included from ../../../src/gmxlib/disre.c:52:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/gmxlib/disre.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/disre.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o futil.lo ../../../src/gmxlib/futil.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/futil.c  -fPIC -DPIC -o .libs/futil.o
../../../src/gmxlib/futil.c: In function 'ffopen':
../../../src/gmxlib/futil.c:287:18: warning: unused variable 'bf' [-Wunused-variable]
   char buf[256],*bf,*bufsize=0,*ptr;
                  ^~
../../../src/gmxlib/futil.c: In function 'get_libdir':
../../../src/gmxlib/futil.c:397:22: warning: variable 'pdum' set but not used [-Wunused-but-set-variable]
   char *dir,*ptr,*s,*pdum;
                      ^~~~
../../../src/gmxlib/futil.c:395:8: warning: unused variable 'test_file' [-Wunused-variable]
   char test_file[MAX_PATHBUF];
        ^~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/futil.c:53:
At top level:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
../../../src/gmxlib/futil.c: In function 'ffopen':
../../../src/gmxlib/futil.c:187:28: warning: '%s' directive writing up to 255 bytes into a region of size 244 [-Wformat-overflow=]
   sprintf(buf,"gunzip -c < %s",fn);
                            ^~
../../../src/gmxlib/futil.c:329:12:
  ff=gunzip(buf,mode);
            ~~~              
In file included from /usr/include/stdio.h:862,
                 from ../../../src/gmxlib/futil.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 13 and 268 bytes into a destination of size 256
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/gmxlib/futil.c:173:32: warning: '%s' directive writing up to 255 bytes into a region of size 240 [-Wformat-overflow=]
   sprintf(buf,"uncompress -c < %s",fn);
                                ^~
../../../src/gmxlib/futil.c:324:21:
       ff=uncompress(buf,mode);
                     ~~~         
In file included from /usr/include/stdio.h:862,
                 from ../../../src/gmxlib/futil.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 17 and 272 bytes into a destination of size 256
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o bondfree.lo ../../../src/gmxlib/bondfree.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/bondfree.c  -fPIC -DPIC -o .libs/bondfree.o
../../../src/gmxlib/bondfree.c: In function 'FENE_bonds':
../../../src/gmxlib/bondfree.c:220:9: warning: unused variable 'dr' [-Wunused-variable]
   real  dr,dr2,bm2,omdr2obm2,fbond,vbond,fij,vtot;
         ^~
../../../src/gmxlib/bondfree.c: In function 'do_1_thole':
../../../src/gmxlib/bondfree.c:534:20: warning: unused variable 'r12n' [-Wunused-variable]
   real r12sq,r12_1,r12n,r12bar,v0,v1,fscal,ebar,fff;
                    ^~~~
../../../src/gmxlib/bondfree.c: In function 'posres':
../../../src/gmxlib/bondfree.c:1136:19: warning: unused variable 'fc' [-Wunused-variable]
   real v,vtot,fm,*fc;
                   ^~
../../../src/gmxlib/bondfree.c:1134:22: warning: unused variable 'ki' [-Wunused-variable]
   int  i,ai,m,d,type,ki,npbcdim=0;
                      ^~
../../../src/gmxlib/bondfree.c: In function 'cross_bond_angle':
../../../src/gmxlib/bondfree.c:1687:32: warning: variable 't3' set but not used [-Wunused-but-set-variable]
   int  i,ai,aj,ak,type,m,t1,t2,t3;
                                ^~
../../../src/gmxlib/bondfree.c: In function 'bonded_tab':
../../../src/gmxlib/bondfree.c:1762:10: warning: unused variable 'f' [-Wunused-variable]
   real v,f,dvdl;
          ^
../../../src/gmxlib/bondfree.c:1762:8: warning: unused variable 'v' [-Wunused-variable]
   real v,f,dvdl;
        ^
../../../src/gmxlib/bondfree.c: In function 'tab_angles':
../../../src/gmxlib/bondfree.c:1887:12: warning: unused variable 'snt' [-Wunused-variable]
       real snt,st,sth;
            ^~~
In file included from ../../../src/gmxlib/bondfree.c:56:
At top level:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/gmxlib/bondfree.c:42:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/bondfree.c:42:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o cinvsqrtdata.lo ../../../src/gmxlib/cinvsqrtdata.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/cinvsqrtdata.c  -fPIC -DPIC -o .libs/cinvsqrtdata.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o ifunc.lo ../../../src/gmxlib/ifunc.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/ifunc.c  -fPIC -DPIC -o .libs/ifunc.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o enxio.lo ../../../src/gmxlib/enxio.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/enxio.c  -fPIC -DPIC -o .libs/enxio.o
../../../src/gmxlib/enxio.c: In function 'empty_file':
../../../src/gmxlib/enxio.c:220:8: warning: variable 'ret' set but not used [-Wunused-but-set-variable]
   int  ret;
        ^~~
../../../src/gmxlib/enxio.c: In function 'get_enx_state':
../../../src/gmxlib/enxio.c:443:16: warning: unused variable 'pcouplmu_nm' [-Wunused-variable]
   static char *pcouplmu_nm[] = {
                ^~~~~~~~~~~
At top level:
../../../src/gmxlib/enxio.c:443:16: warning: 'pcouplmu_nm' defined but not used [-Wunused-variable]
In file included from ../../../src/gmxlib/enxio.c:46:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/enxio.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gbutil.lo ../../../src/gmxlib/gbutil.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/gbutil.c  -fPIC -DPIC -o .libs/gbutil.o
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/gmxlib/gbutil.c:45:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/gmxlib/gbutil.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/gbutil.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o macros.lo ../../../src/gmxlib/macros.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/macros.c  -fPIC -DPIC -o .libs/macros.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmxfio.lo ../../../src/gmxlib/gmxfio.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/gmxfio.c  -fPIC -DPIC -o .libs/gmxfio.o
../../../src/gmxlib/gmxfio.c: In function 'gmx_fio_fopen':
../../../src/gmxlib/gmxfio.c:803:8: warning: unused variable 'fp' [-Wunused-variable]
  FILE *fp;
        ^~
../../../src/gmxlib/gmxfio.c: In function 'gmx_fio_get_output_file_positions':
../../../src/gmxlib/gmxfio.c:885:27: warning: unused variable 'pos' [-Wunused-variable]
  long                     pos;
                           ^~~
../../../src/gmxlib/gmxfio.c:884:34: warning: unused variable 'pos_lo' [-Wunused-variable]
  int                      pos_hi,pos_lo;
                                  ^~~~~~
../../../src/gmxlib/gmxfio.c:884:27: warning: unused variable 'pos_hi' [-Wunused-variable]
  int                      pos_hi,pos_lo;
                           ^~~~~~
../../../src/gmxlib/gmxfio.c:883:36: warning: unused variable 'rc' [-Wunused-variable]
  int                      i,nfiles,rc,nalloc;
                                    ^~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o invblock.lo ../../../src/gmxlib/invblock.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/invblock.c  -fPIC -DPIC -o .libs/invblock.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o filenm.lo ../../../src/gmxlib/filenm.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/filenm.c  -fPIC -DPIC -o .libs/filenm.o
../../../src/gmxlib/filenm.c: In function 'add_suffix_to_output_names':
../../../src/gmxlib/filenm.c:811:12: warning: unused variable 'pos' [-Wunused-variable]
  int   i,j,pos;
            ^~~
In file included from ../../../include/wman.h:44,
                 from ../../../src/gmxlib/filenm.c:48:
At top level:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
../../../src/gmxlib/filenm.c: In function 'add_suffix_to_output_names':
../../../src/gmxlib/filenm.c:825:27: warning: '.' directive writing 1 byte into a region of size between 0 and 4095 [-Wformat-overflow=]
     sprintf(newname,"%s.%s.%s",buf,suffix,extpos+1);
                           ^
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/gmxlib/filenm.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 3 or more bytes (assuming 4098) into a destination of size 4096
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o main.lo ../../../src/gmxlib/main.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/main.c  -fPIC -DPIC -o .libs/main.o
../../../src/gmxlib/main.c: In function 'par_fn':
../../../src/gmxlib/main.c:68:7: warning: unused variable 'n' [-Wunused-variable]
   int n;
       ^
../../../src/gmxlib/main.c: In function 'gmx_log_open':
../../../src/gmxlib/main.c:124:12: warning: unused variable 'testlen' [-Wunused-variable]
   int  len,testlen,pid;
            ^~~~~~~
../../../src/gmxlib/main.c: In function 'init_par':
../../../src/gmxlib/main.c:309:13: warning: unused variable 'i' [-Wunused-variable]
   int       i;
             ^
In file included from ../../../include/pull.h:44,
                 from ../../../include/mdrun.h:56,
                 from ../../../src/gmxlib/main.c:52:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../include/pull.h:44,
                 from ../../../include/mdrun.h:56,
                 from ../../../src/gmxlib/main.c:52:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/mdrun.h:50,
                 from ../../../src/gmxlib/main.c:52:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o sparsematrix.lo ../../../src/gmxlib/sparsematrix.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/sparsematrix.c  -fPIC -DPIC -o .libs/sparsematrix.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o maths.lo ../../../src/gmxlib/maths.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/maths.c  -fPIC -DPIC -o .libs/maths.o
In file included from ../../../src/gmxlib/maths.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o mtop_util.lo ../../../src/gmxlib/mtop_util.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/mtop_util.c  -fPIC -DPIC -o .libs/mtop_util.o
../../../src/gmxlib/mtop_util.c: In function 'gmx_mtop_atomnr_to_molblock_ind':
../../../src/gmxlib/mtop_util.c:105:14: warning: unused variable 'atoms' [-Wunused-variable]
     t_atoms *atoms;
              ^~~~~
../../../src/gmxlib/mtop_util.c: In function 'gmx_mtop_atominfo_global':
../../../src/gmxlib/mtop_util.c:132:21: warning: unused variable 'molb' [-Wunused-variable]
     gmx_molblock_t *molb;
                     ^~~~
../../../src/gmxlib/mtop_util.c: In function 'gmx_mtop_ilistloop_all_next':
../../../src/gmxlib/mtop_util.c:384:21: warning: unused variable 'molb' [-Wunused-variable]
     gmx_molblock_t *molb;
                     ^~~~
../../../src/gmxlib/mtop_util.c: In function 'gmx_mtop_global_cgs':
../../../src/gmxlib/mtop_util.c:438:14: warning: unused variable 'atoms' [-Wunused-variable]
     t_atoms *atoms;
              ^~~~~
../../../src/gmxlib/mtop_util.c: In function 'gen_local_top':
../../../src/gmxlib/mtop_util.c:669:31: warning: unused variable 'mt' [-Wunused-variable]
     int mb,srcnr,destnr,ftype,mt,natoms,nposre_old;
                               ^~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o names.lo ../../../src/gmxlib/names.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/names.c  -fPIC -DPIC -o .libs/names.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o index.lo ../../../src/gmxlib/index.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/index.c  -fPIC -DPIC -o .libs/index.o
../../../src/gmxlib/index.c: In function 'analyse_prot':
../../../src/gmxlib/index.c:298:15: warning: unused variable 'nnpres' [-Wunused-variable]
   int     nra,nnpres,npres;
               ^~~~~~
../../../src/gmxlib/index.c: In function 'init_index':
../../../src/gmxlib/index.c:532:19: warning: variable 'nread' set but not used [-Wunused-but-set-variable]
   int      i,j,ng,nread;
                   ^~~~~
In file included from ../../../src/gmxlib/index.c:51:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/index.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o mtxio.lo ../../../src/gmxlib/mtxio.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/mtxio.c  -fPIC -DPIC -o .libs/mtxio.o
../../../src/gmxlib/mtxio.c: In function 'gmx_mtxio_write':
../../../src/gmxlib/mtxio.c:90:13: warning: variable 'xd' set but not used [-Wunused-but-set-variable]
     XDR *   xd;
             ^~
../../../src/gmxlib/mtxio.c: In function 'gmx_mtxio_read':
../../../src/gmxlib/mtxio.c:164:13: warning: variable 'xd' set but not used [-Wunused-but-set-variable]
     XDR *   xd;
             ^~
In file included from ../../../src/gmxlib/mtxio.c:48:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o mshift.lo ../../../src/gmxlib/mshift.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/mshift.c  -fPIC -DPIC -o .libs/mshift.o
../../../src/gmxlib/mshift.c: In function 'compact_graph':
../../../src/gmxlib/mshift.c:243:12: warning: unused variable 'e' [-Wunused-variable]
   atom_id *e;
            ^
../../../src/gmxlib/mshift.c:242:9: warning: unused variable 'j' [-Wunused-variable]
   int i,j,n,max_nedge;
         ^
../../../src/gmxlib/mshift.c: In function 'mk_graph_ilist':
../../../src/gmxlib/mshift.c:307:13: warning: variable 'nbtot' set but not used [-Wunused-but-set-variable]
   int     i,nbtot;
             ^~~~~
In file included from ../../../src/gmxlib/mshift.c:46:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/gmxlib/mshift.c:44:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/mshift.c:44:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nrama.lo ../../../src/gmxlib/nrama.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/nrama.c  -fPIC -DPIC -o .libs/nrama.o
../../../src/gmxlib/nrama.c: In function 'get_dih2':
../../../src/gmxlib/nrama.c:179:11: warning: unused variable 'found' [-Wunused-variable]
   int     found,**ff,thisff[NPP];
           ^~~~~
../../../src/gmxlib/nrama.c: In function 'init_rama':
../../../src/gmxlib/nrama.c:307:10: warning: unused variable 'ePBC' [-Wunused-variable]
   int    ePBC;
          ^~~~
At top level:
../../../src/gmxlib/nrama.c:176:13: warning: 'get_dih2' defined but not used [-Wunused-function]
 static void get_dih2(t_xrama *xr,t_functype functype[],
             ^~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/nrama.h:45,
                 from ../../../src/gmxlib/nrama.c:49:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
../../../src/gmxlib/nrama.c: In function 'init_rama':
../../../src/gmxlib/nrama.c:125:21: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=]
   sprintf(buf,"%s-%d",*atoms->resname[atoms->atom[ff[1]].resnr],
                     ^
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/gmxlib/nrama.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 3 or more bytes (assuming 13) into a destination of size 12
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o matio.lo ../../../src/gmxlib/matio.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/matio.c  -fPIC -DPIC -o .libs/matio.o
../../../src/gmxlib/matio.c: In function 'write_xpm_map_split':
../../../src/gmxlib/matio.c:636:16: warning: unused variable 'fac' [-Wunused-variable]
   real   r,g,b,fac;
                ^~~
../../../src/gmxlib/matio.c:636:14: warning: unused variable 'b' [-Wunused-variable]
   real   r,g,b,fac;
              ^
../../../src/gmxlib/matio.c:636:12: warning: unused variable 'g' [-Wunused-variable]
   real   r,g,b,fac;
            ^
../../../src/gmxlib/matio.c:636:10: warning: unused variable 'r' [-Wunused-variable]
   real   r,g,b,fac;
          ^
../../../src/gmxlib/matio.c:635:10: warning: unused variable 'i' [-Wunused-variable]
   int    i,ntot;
          ^
In file included from ../../../src/gmxlib/matio.c:50:
At top level:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/matio.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o network.lo ../../../src/gmxlib/network.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/network.c  -fPIC -DPIC -o .libs/network.o
../../../src/gmxlib/network.c: In function 'gmx_setup':
../../../src/gmxlib/network.c:75:12: warning: unused variable 'flag' [-Wunused-variable]
   int    i,flag;
            ^~~~
../../../src/gmxlib/network.c:75:10: warning: unused variable 'i' [-Wunused-variable]
   int    i,flag;
          ^
../../../src/gmxlib/network.c:73:10: warning: unused variable 'buf' [-Wunused-variable]
   char   buf[256];
          ^~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/network.c:46:
At top level:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/gmxlib/network.c:45:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o orires.lo ../../../src/gmxlib/orires.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/orires.c  -fPIC -DPIC -o .libs/orires.o
../../../src/gmxlib/orires.c: In function 'init_orires':
../../../src/gmxlib/orires.c:59:26: warning: unused variable 'nr' [-Wunused-variable]
     int    i,j,d,ex,nmol,nr,*nr_ex;
                          ^~
In file included from ../../../src/gmxlib/orires.c:49:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/gmxlib/orires.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/orires.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o mvdata.lo ../../../src/gmxlib/mvdata.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/mvdata.c  -fPIC -DPIC -o .libs/mvdata.o
../../../src/gmxlib/mvdata.c: In function 'bc_atoms':
../../../src/gmxlib/mvdata.c:147:7: warning: unused variable 'dummy' [-Wunused-variable]
   int dummy;
       ^~~~~
../../../src/gmxlib/mvdata.c: In function 'bc_groups':
../../../src/gmxlib/mvdata.c:162:7: warning: unused variable 'dummy' [-Wunused-variable]
   int dummy;
       ^~~~~
../../../src/gmxlib/mvdata.c: In function 'bc_ffparams':
../../../src/gmxlib/mvdata.c:290:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/gmxlib/mvdata.c: In function 'bc_molblock':
../../../src/gmxlib/mvdata.c:427:8: warning: unused variable 'bAlloc' [-Wunused-variable]
   bool bAlloc=TRUE;
        ^~~~~~
At top level:
../../../src/gmxlib/mvdata.c:275:13: warning: 'bc_idef' defined but not used [-Wunused-function]
 static void bc_idef(const t_commrec *cr,t_idef *idef)
             ^~~~~~~
In file included from ../../../src/gmxlib/mvdata.c:50:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/mvdata.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o rando.lo ../../../src/gmxlib/rando.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/rando.c  -fPIC -DPIC -o .libs/rando.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o pargs.lo ../../../src/gmxlib/pargs.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/pargs.c  -fPIC -DPIC -o .libs/pargs.o
../../../src/gmxlib/pargs.c: In function 'print_pargs':
../../../src/gmxlib/pargs.c:306:26: warning: unused variable 'tmp' [-Wunused-variable]
   char buf[32],buf2[256],tmp[256];
                          ^~~
../../../src/gmxlib/pargs.c:306:16: warning: unused variable 'buf2' [-Wunused-variable]
   char buf[32],buf2[256],tmp[256];
                ^~~~
../../../src/gmxlib/pargs.c:306:8: warning: unused variable 'buf' [-Wunused-variable]
   char buf[32],buf2[256],tmp[256];
        ^~~
In file included from ../../../src/gmxlib/pargs.c:51:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/pargs.c:51:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nrjac.lo ../../../src/gmxlib/nrjac.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/nrjac.c  -fPIC -DPIC -o .libs/nrjac.o
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/gmxlib/nrjac.c:44:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o pdbio.lo ../../../src/gmxlib/pdbio.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/pdbio.c  -fPIC -DPIC -o .libs/pdbio.o
In file included from ../../../src/gmxlib/pdbio.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/gmxlib/pdbio.c:44:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/pdbio.c:44:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
../../../src/gmxlib/pdbio.c: In function 'read_pdbfile':
../../../src/gmxlib/pdbio.c:570:23: warning: 'd' directive writing 1 byte into a region of size between 0 and 31 [-Wformat-overflow=]
   sprintf(format,"%s%%d",form2);
                       ^
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/gmxlib/pdbio.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 3 and 34 bytes into a destination of size 32
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/gmxlib/pdbio.c:574:27: warning: 'd' directive writing 1 byte into a region of size between 0 and 31 [-Wformat-overflow=]
       sprintf(format,"%s%%d",form2);
                           ^
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/gmxlib/pdbio.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 3 and 34 bytes into a destination of size 32
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nrnb.lo ../../../src/gmxlib/nrnb.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/nrnb.c  -fPIC -DPIC -o .libs/nrnb.o
../../../src/gmxlib/nrnb.c: In function 'pr_load':
../../../src/gmxlib/nrnb.c:473:3: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
   for(j=0; (j<eNRNB); j++)
   ^~~
../../../src/gmxlib/nrnb.c:476:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
     fprintf(log,"\nDetailed load balancing info in percentage of average\n");
     ^~~~~~~
In file included from ../../../src/gmxlib/nrnb.c:48:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_random.lo ../../../src/gmxlib/gmx_random.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/gmx_random.c  -fPIC -DPIC -o .libs/gmx_random.o
../../../src/gmxlib/gmx_random.c: In function 'gmx_rng_make_seed':
../../../src/gmxlib/gmx_random.c:146:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable]
   int ret;
       ^~~
../../../src/gmxlib/gmx_random.c: In function 'gmx_rng_update':
../../../src/gmxlib/gmx_random.c:168:7: warning: variable 'mti' set but not used [-Wunused-but-set-variable]
   int mti,k;
       ^~~
../../../src/gmxlib/gmx_random.c:167:16: warning: unused variable 'lastx' [-Wunused-variable]
   unsigned int lastx,x1,x2,y,*mt;
                ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o replace.lo ../../../src/gmxlib/replace.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/replace.c  -fPIC -DPIC -o .libs/replace.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o pbc.lo ../../../src/gmxlib/pbc.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/pbc.c  -fPIC -DPIC -o .libs/pbc.o
../../../src/gmxlib/pbc.c: In function 'low_set_pbc':
../../../src/gmxlib/pbc.c:272:8: warning: unused variable 'bXY' [-Wunused-variable]
   bool bXY,bUse;
        ^~~
../../../src/gmxlib/pbc.c: In function 'put_atom_in_box':
../../../src/gmxlib/pbc.c:1300:7: warning: unused variable 'i' [-Wunused-variable]
   int i,m,d;
       ^
../../../src/gmxlib/pbc.c: In function 'put_atoms_in_box':
../../../src/gmxlib/pbc.c:1314:11: warning: unused variable 'd' [-Wunused-variable]
   int i,m,d;
           ^
../../../src/gmxlib/pbc.c:1314:9: warning: unused variable 'm' [-Wunused-variable]
   int i,m,d;
         ^
In file included from ../../../src/gmxlib/pbc.c:43:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/pbc.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o rbin.lo ../../../src/gmxlib/rbin.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/rbin.c  -fPIC -DPIC -o .libs/rbin.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o princ.lo ../../../src/gmxlib/princ.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/princ.c  -fPIC -DPIC -o .libs/princ.o
../../../src/gmxlib/princ.c:249:13: warning: 'dump_shit' defined but not used [-Wunused-function]
 static void dump_shit(FILE *out,matrix trans,rvec prcomp,real totmass)
             ^~~~~~~~~
../../../src/gmxlib/princ.c:48:13: warning: 'm_op' defined but not used [-Wunused-function]
 static void m_op(matrix mat,rvec x)
             ^~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/gmxlib/princ.c:44:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/gmxlib/princ.c:42:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/princ.c:42:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o random.lo ../../../src/gmxlib/random.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/random.c  -fPIC -DPIC -o .libs/random.o
../../../src/gmxlib/random.c: In function 'maxwell_speed':
../../../src/gmxlib/random.c:94:11: warning: unused variable 'i' [-Wunused-variable]
   int     i;
           ^
../../../src/gmxlib/random.c:93:12: warning: unused variable 'dummy' [-Wunused-variable]
   atom_id *dummy;
            ^~~~~
In file included from ../../../src/gmxlib/random.c:45:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/random.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o rmpbc.lo ../../../src/gmxlib/rmpbc.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/rmpbc.c  -fPIC -DPIC -o .libs/rmpbc.o
In file included from ../../../src/gmxlib/rmpbc.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/rmpbc.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/gmxlib/rmpbc.c:45:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o readinp.lo ../../../src/gmxlib/readinp.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/readinp.c  -fPIC -DPIC -o .libs/readinp.o
In file included from ../../../src/gmxlib/readinp.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o strdb.lo ../../../src/gmxlib/strdb.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/strdb.c  -fPIC -DPIC -o .libs/strdb.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o smalloc.lo ../../../src/gmxlib/smalloc.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/smalloc.c  -fPIC -DPIC -o .libs/smalloc.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o string2.lo ../../../src/gmxlib/string2.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/string2.c  -fPIC -DPIC -o .libs/string2.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o symtab.lo ../../../src/gmxlib/symtab.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/symtab.c  -fPIC -DPIC -o .libs/symtab.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o topsort.lo ../../../src/gmxlib/topsort.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/topsort.c  -fPIC -DPIC -o .libs/topsort.o
../../../src/gmxlib/topsort.c: In function 'gmx_sort_ilist_fe':
../../../src/gmxlib/topsort.c:142:10: warning: unused variable 'bPert' [-Wunused-variable]
     bool bPert;
          ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o sortwater.lo ../../../src/gmxlib/sortwater.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/sortwater.c  -fPIC -DPIC -o .libs/sortwater.o
In file included from ../../../src/gmxlib/sortwater.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/sortwater.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o shift_util.lo ../../../src/gmxlib/shift_util.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/shift_util.c  -fPIC -DPIC -o .libs/shift_util.o
../../../src/gmxlib/shift_util.c: In function 'shift_LRcorrection':
../../../src/gmxlib/shift_util.c:257:10: warning: unused variable 'shift' [-Wunused-variable]
   ivec   shift;
          ^~~~~
../../../src/gmxlib/shift_util.c:253:42: warning: unused variable 'qtot' [-Wunused-variable]
   real   qi,dr,dr2,dr_1,dr_3,fscal,Vexcl,qtot=0;
                                          ^~~~
../../../src/gmxlib/shift_util.c:252:10: warning: unused variable 'isp' [-Wunused-variable]
   double isp=0.564189583547756;
          ^~~
At top level:
../../../src/gmxlib/shift_util.c:370:13: warning: 'rgbset' defined but not used [-Wunused-function]
 static real rgbset(real col)
             ^~~~~~
In file included from ../../../src/gmxlib/shift_util.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/shift_util.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o statutil.lo ../../../src/gmxlib/statutil.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/statutil.c  -fPIC -DPIC -o .libs/statutil.o
../../../src/gmxlib/statutil.c: In function 'check_times2':
../../../src/gmxlib/statutil.c:152:8: warning: variable 'margin' set but not used [-Wunused-but-set-variable]
   real margin;
        ^~~~~~
../../../src/gmxlib/statutil.c: In function 'parse_common_args':
../../../src/gmxlib/statutil.c:528:14: warning: unused variable 'newdesc' [-Wunused-variable]
   char *ptr,*newdesc;
              ^~~~~~~
../../../src/gmxlib/statutil.c:528:9: warning: unused variable 'ptr' [-Wunused-variable]
   char *ptr,*newdesc;
         ^~~
../../../src/gmxlib/statutil.c:491:11: warning: unused variable 'npri_pa' [-Wunused-variable]
   t_pargs npri_pa   = { "-npri", FALSE, etINT,   {&npri},
           ^~~~~~~
../../../src/gmxlib/statutil.c:485:27: warning: unused variable 'mantp' [-Wunused-variable]
   static int  nicelevel=0,mantp=0,npri=0,debug_level=0;
                           ^~~~~
At top level:
../../../src/gmxlib/statutil.c:485:27: warning: 'mantp' defined but not used [-Wunused-variable]
../../../src/gmxlib/statutil.c:361:13: warning: 'pdesc' defined but not used [-Wunused-function]
 static void pdesc(char *desc)
             ^~~~~
../../../src/gmxlib/statutil.c:73:14: warning: 'timelabel' defined but not used [-Wunused-variable]
 static char *timelabel     = NULL;
              ^~~~~~~~~
In file included from ../../../src/gmxlib/statutil.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/statutil.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/statutil.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o wgms.lo ../../../src/gmxlib/wgms.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/wgms.c  -fPIC -DPIC -o .libs/wgms.o
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/gmxlib/wgms.c:41:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o typedefs.lo ../../../src/gmxlib/typedefs.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/typedefs.c  -fPIC -DPIC -o .libs/typedefs.o
../../../src/gmxlib/typedefs.c: In function 'init_block':
../../../src/gmxlib/typedefs.c:64:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/gmxlib/typedefs.c: In function 'init_blocka':
../../../src/gmxlib/typedefs.c:74:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/gmxlib/typedefs.c: In function 'init_atom':
../../../src/gmxlib/typedefs.c:87:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/gmxlib/typedefs.c: In function 'init_top':
../../../src/gmxlib/typedefs.c:135:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/gmxlib/typedefs.c: In function 'done_top':
../../../src/gmxlib/typedefs.c:284:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/gmxlib/typedefs.c: In function 'init_state':
../../../src/gmxlib/typedefs.c:386:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
In file included from ../../../src/gmxlib/typedefs.c:43:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/typedefs.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o viewit.lo ../../../src/gmxlib/viewit.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/viewit.c  -fPIC -DPIC -o .libs/viewit.o
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/viewit.c:42:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o trnio.lo ../../../src/gmxlib/trnio.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/trnio.c  -fPIC -DPIC -o .libs/trnio.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o xdrd.lo ../../../src/gmxlib/xdrd.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/xdrd.c  -fPIC -DPIC -o .libs/xdrd.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o writeps.lo ../../../src/gmxlib/writeps.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/writeps.c  -fPIC -DPIC -o .libs/writeps.o
In file included from ../../../src/gmxlib/writeps.c:43:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o wman.lo ../../../src/gmxlib/wman.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/wman.c  -fPIC -DPIC -o .libs/wman.o
../../../src/gmxlib/wman.c: In function 'mydate':
../../../src/gmxlib/wman.c:168:15: warning: unused variable 'num' [-Wunused-variable]
   const char *num[] = { "01", "02", "03", "04", "05", "06","07", "08", "09" };
               ^~~
../../../src/gmxlib/wman.c: In function 'print_tty_formatted':
../../../src/gmxlib/wman.c:510:16: warning: unused variable 'j' [-Wunused-variable]
   int buflen,i,j;
                ^
../../../src/gmxlib/wman.c: In function 'write_wikiman':
../../../src/gmxlib/wman.c:631:14: warning: unused variable 'tmp2' [-Wunused-variable]
   char *tmp,*tmp2;
              ^~~~
../../../src/gmxlib/wman.c:630:17: warning: unused variable 'link' [-Wunused-variable]
   char buf[256],link[10];
                 ^~~~
../../../src/gmxlib/wman.c: In function 'write_htmlman':
../../../src/gmxlib/wman.c:682:8: warning: unused variable 'link' [-Wunused-variable]
   char link[10],tmp[255];
        ^~~~
../../../src/gmxlib/wman.c: In function 'write_xmlman':
../../../src/gmxlib/wman.c:788:7: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
       if (strcmp(link,"???")==0)
       ^~
../../../src/gmxlib/wman.c:790:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
         if (fnm[i].opt[0]=='-') strcpy(opt,fnm[i].opt+1);
         ^~
../../../src/gmxlib/wman.c: In function 'write_py':
../../../src/gmxlib/wman.c:925:8: warning: unused variable 'bHidden' [-Wunused-variable]
   bool bHidden;
        ^~~~~~~
In file included from ../../../src/gmxlib/wman.c:48:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o xtcio.lo ../../../src/gmxlib/xtcio.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/xtcio.c  -fPIC -DPIC -o .libs/xtcio.o
In file included from ../../../src/gmxlib/xtcio.c:46:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/xtcio.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o xvgr.lo ../../../src/gmxlib/xvgr.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/xvgr.c  -fPIC -DPIC -o .libs/xvgr.o
../../../src/gmxlib/xvgr.c: In function 'use_xmgr':
../../../src/gmxlib/xvgr.c:56:8: warning: unused variable 'bXMGR' [-Wunused-variable]
   bool bXMGR;
        ^~~~~
../../../src/gmxlib/xvgr.c: In function 'read_xvg_time':
../../../src/gmxlib/xvgr.c:402:14: warning: unused variable 'tend' [-Wunused-variable]
   double dbl,tend=0;
              ^~~~
In file included from ../../../src/gmxlib/xvgr.c:50:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/xvgr.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/gmxlib/xvgr.c:46:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/xvgr.c:45:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o trxio.lo ../../../src/gmxlib/trxio.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/trxio.c  -fPIC -DPIC -o .libs/trxio.o
In file included from ../../../src/gmxlib/trxio.c:53:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/gmxlib/trxio.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/trxio.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/trxio.c:45:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dihres.lo ../../../src/gmxlib/dihres.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/dihres.c  -fPIC -DPIC -o .libs/dihres.o
../../../src/gmxlib/dihres.c: In function 'ta_dihres':
../../../src/gmxlib/dihres.c:77:30: warning: unused variable 'dp2' [-Wunused-variable]
   real phi0,phi,ddphi,ddp,dp,dp2,dphi,kfac,cos_phi,sign,d2r,fc;
                              ^~~
../../../src/gmxlib/dihres.c:76:29: warning: unused variable 'typep' [-Wunused-variable]
   int  ai,aj,ak,al,i,k,type,typep,label,power,t1,t2,t3;
                             ^~~~~
In file included from ../../../src/gmxlib/dihres.c:51:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/gmxlib/dihres.c:46:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/dihres.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o tcontrol.lo ../../../src/gmxlib/tcontrol.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/tcontrol.c  -fPIC -DPIC -o .libs/tcontrol.o
../../../src/gmxlib/tcontrol.c:61:22: warning: 'timeconvert' defined but not used [-Wunused-variable]
 static t_timeconvert timeconvert[] = {
                      ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/tcontrol.c:41:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_cyclecounter.lo ../../../src/gmxlib/gmx_cyclecounter.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/gmx_cyclecounter.c  -fPIC -DPIC -o .libs/gmx_cyclecounter.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o splitter.lo ../../../src/gmxlib/splitter.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/splitter.c  -fPIC -DPIC -o .libs/splitter.o
../../../src/gmxlib/splitter.c: In function 'split_force2':
../../../src/gmxlib/splitter.c:112:17: warning: variable 'type' set but not used [-Wunused-but-set-variable]
   int     i,j,k,type,nodeid,nratoms,tnr;
                 ^~~~
../../../src/gmxlib/splitter.c:112:13: warning: unused variable 'j' [-Wunused-variable]
   int     i,j,k,type,nodeid,nratoms,tnr;
             ^
../../../src/gmxlib/splitter.c: In function 'mk_border':
../../../src/gmxlib/splitter.c:244:14: warning: unused variable 'j' [-Wunused-variable]
   int      i,j,is,ic,ns,nc,nbor;
              ^
../../../src/gmxlib/splitter.c: In function 'split_blocks':
../../../src/gmxlib/splitter.c:316:11: warning: unused variable 'bSHK' [-Wunused-variable]
   bool    bSHK;
           ^~~~
../../../src/gmxlib/splitter.c:312:19: warning: unused variable 'last_shk' [-Wunused-variable]
   int      nodeid,last_shk,nbor;
                   ^~~~~~~~
../../../src/gmxlib/splitter.c:311:17: warning: unused variable 'ai' [-Wunused-variable]
   int      i,ii,ai,b0,b1;
                 ^~
../../../src/gmxlib/splitter.c:311:14: warning: unused variable 'ii' [-Wunused-variable]
   int      i,ii,ai,b0,b1;
              ^~
../../../src/gmxlib/splitter.c: In function 'merge_sid':
../../../src/gmxlib/splitter.c:556:8: warning: unused variable 'nChanged' [-Wunused-variable]
   int  nChanged;
        ^~~~~~~~
../../../src/gmxlib/splitter.c: In function 'gen_sblocks':
../../../src/gmxlib/splitter.c:654:11: warning: unused variable 'isid' [-Wunused-variable]
   int     isid,nsid;
           ^~~~
../../../src/gmxlib/splitter.c:652:27: warning: unused variable 'n' [-Wunused-variable]
   int     i,i0,j,k,istart,n;
                           ^
../../../src/gmxlib/splitter.c:652:20: warning: unused variable 'istart' [-Wunused-variable]
   int     i,i0,j,k,istart,n;
                    ^~~~~~
../../../src/gmxlib/splitter.c:652:18: warning: unused variable 'k' [-Wunused-variable]
   int     i,i0,j,k,istart,n;
                  ^
../../../src/gmxlib/splitter.c:652:16: warning: unused variable 'j' [-Wunused-variable]
   int     i,i0,j,k,istart,n;
                ^
../../../src/gmxlib/splitter.c: In function 'split_top':
../../../src/gmxlib/splitter.c:755:21: warning: unused variable 'minidx' [-Wunused-variable]
   int minhome,ihome,minidx;
                     ^~~~~~
../../../src/gmxlib/splitter.c:755:15: warning: unused variable 'ihome' [-Wunused-variable]
   int minhome,ihome,minidx;
               ^~~~~
../../../src/gmxlib/splitter.c:755:7: warning: unused variable 'minhome' [-Wunused-variable]
   int minhome,ihome,minidx;
       ^~~~~~~
../../../src/gmxlib/splitter.c:754:14: warning: unused variable 'ia' [-Wunused-variable]
   t_iatom   *ia;
              ^~
../../../src/gmxlib/splitter.c:753:31: warning: unused variable 'nrd' [-Wunused-variable]
   int ftype,nvsite_constr,nra,nrd;
                               ^~~
../../../src/gmxlib/splitter.c:753:27: warning: unused variable 'nra' [-Wunused-variable]
   int ftype,nvsite_constr,nra,nrd;
                           ^~~
../../../src/gmxlib/splitter.c:753:13: warning: unused variable 'nvsite_constr' [-Wunused-variable]
   int ftype,nvsite_constr,nra,nrd;
             ^~~~~~~~~~~~~
../../../src/gmxlib/splitter.c:753:7: warning: unused variable 'ftype' [-Wunused-variable]
   int ftype,nvsite_constr,nra,nrd;
       ^~~~~
../../../src/gmxlib/splitter.c:748:59: warning: unused variable 'nodeid' [-Wunused-variable]
   int     natoms,i,j,k,mj,atom,maxatom,sstart,send,bstart,nodeid;
                                                           ^~~~~~
../../../src/gmxlib/splitter.c:748:52: warning: unused variable 'bstart' [-Wunused-variable]
   int     natoms,i,j,k,mj,atom,maxatom,sstart,send,bstart,nodeid;
                                                    ^~~~~~
../../../src/gmxlib/splitter.c:748:47: warning: unused variable 'send' [-Wunused-variable]
   int     natoms,i,j,k,mj,atom,maxatom,sstart,send,bstart,nodeid;
                                               ^~~~
../../../src/gmxlib/splitter.c:748:40: warning: unused variable 'sstart' [-Wunused-variable]
   int     natoms,i,j,k,mj,atom,maxatom,sstart,send,bstart,nodeid;
                                        ^~~~~~
../../../src/gmxlib/splitter.c:748:32: warning: unused variable 'maxatom' [-Wunused-variable]
   int     natoms,i,j,k,mj,atom,maxatom,sstart,send,bstart,nodeid;
                                ^~~~~~~
../../../src/gmxlib/splitter.c:748:18: warning: unused variable 'i' [-Wunused-variable]
   int     natoms,i,j,k,mj,atom,maxatom,sstart,send,bstart,nodeid;
                  ^
At top level:
../../../src/gmxlib/splitter.c:726:17: warning: 'block2blocka' defined but not used [-Wunused-function]
 static t_blocka block2blocka(t_block *block)
                 ^~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o libxdrf.lo ../../../src/gmxlib/libxdrf.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/libxdrf.c  -fPIC -DPIC -o .libs/libxdrf.o
In file included from ../../../include/xdrf.h:41,
                 from ../../../src/gmxlib/libxdrf.c:46:
../../../src/gmxlib/libxdrf.c:145:10: warning: return type defaults to 'int' [-Wimplicit-int]
 F77_FUNC(xdrfshort,XDRFSHORT)(int *xdrid, short *sp, int *ret)
          ^~~~~~~~~
../../src/config.h:28:29: note: in definition of macro 'F77_FUNC'
 #define F77_FUNC(name,NAME) name ## _
                             ^~~~
../../../src/gmxlib/libxdrf.c: In function 'xdr3dfcoord':
../../../src/gmxlib/libxdrf.c:705:9: warning: unused variable 'rc' [-Wunused-variable]
     int rc;
         ^~
../../../src/gmxlib/libxdrf.c: In function 'xtc_get_next_frame_start':
../../../src/gmxlib/libxdrf.c:1374:9: warning: unused variable 'inp' [-Wunused-variable]
     int inp;
         ^~~
../../../src/gmxlib/libxdrf.c: In function 'xdr_xtc_seek_time':
../../../src/gmxlib/libxdrf.c:1522:9: warning: unused variable 'res' [-Wunused-variable]
     int res;
         ^~~
../../../src/gmxlib/libxdrf.c: In function 'xtc_get_last_frame_number':
../../../src/gmxlib/libxdrf.c:1691:9: warning: unused variable 'res' [-Wunused-variable]
     int res;
         ^~~
../../../src/gmxlib/libxdrf.c: In function 'xdrfshort_':
../../../src/gmxlib/libxdrf.c:149:1: warning: control reaches end of non-void function [-Wreturn-type]
 }
 ^
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/libxdrf.c:45:
At top level:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o txtdump.lo ../../../src/gmxlib/txtdump.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/txtdump.c  -fPIC -DPIC -o .libs/txtdump.o
../../../src/gmxlib/txtdump.c: In function 'pr_qm_opts':
../../../src/gmxlib/txtdump.c:339:11: warning: unused variable 'j' [-Wunused-variable]
   int i,m,j;
           ^
../../../src/gmxlib/txtdump.c:339:9: warning: unused variable 'm' [-Wunused-variable]
   int i,m,j;
         ^
../../../src/gmxlib/txtdump.c:339:7: warning: unused variable 'i' [-Wunused-variable]
   int i,m,j;
       ^
../../../src/gmxlib/txtdump.c: In function 'pr_ffparams':
../../../src/gmxlib/txtdump.c:906:9: warning: unused variable 'j' [-Wunused-variable]
   int i,j;
         ^
../../../src/gmxlib/txtdump.c: In function 'pr_block_title':
../../../src/gmxlib/txtdump.c:950:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/gmxlib/txtdump.c: In function 'pr_blocka_title':
../../../src/gmxlib/txtdump.c:963:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/gmxlib/txtdump.c: In function 'pr_block':
../../../src/gmxlib/txtdump.c:1016:9: warning: unused variable 'j' [-Wunused-variable]
   int i,j,ok,size,start,end;
         ^
../../../src/gmxlib/txtdump.c: In function 'pr_atom':
../../../src/gmxlib/txtdump.c:1120:9: warning: unused variable 'j' [-Wunused-variable]
   int i,j;
         ^
../../../src/gmxlib/txtdump.c: In function 'pr_groups':
../../../src/gmxlib/txtdump.c:1151:9: warning: unused variable 'grpnr' [-Wunused-variable]
     int grpnr[egcNR];
         ^~~~~
At top level:
../../../src/gmxlib/txtdump.c:976:13: warning: 'low_pr_block' defined but not used [-Wunused-function]
 static void low_pr_block(FILE *fp,int indent,const char *title,t_block *block, bool bShowNumbers)
             ^~~~~~~~~~~~
In file included from ../../../src/gmxlib/txtdump.c:51:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/txtdump.c:51:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o tpxio.lo ../../../src/gmxlib/tpxio.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/tpxio.c  -fPIC -DPIC -o .libs/tpxio.o
../../../src/gmxlib/tpxio.c: In function 'do_ilist':
../../../src/gmxlib/tpxio.c:987:10: warning: unused variable 'k' [-Wunused-variable]
   int  i,k,idum;
          ^
../../../src/gmxlib/tpxio.c: In function 'do_ffparams':
../../../src/gmxlib/tpxio.c:1008:15: warning: unused variable 'j' [-Wunused-variable]
   int  idum,i,j,k;
               ^
../../../src/gmxlib/tpxio.c: In function 'do_ilists':
../../../src/gmxlib/tpxio.c:1061:8: warning: unused variable 'bDum' [-Wunused-variable]
   bool bDum=TRUE,bClear;
        ^~~~
../../../src/gmxlib/tpxio.c:1060:13: warning: unused variable 'renum' [-Wunused-variable]
   int i,j,k,renum[F_NRE];
             ^~~~~
../../../src/gmxlib/tpxio.c:1060:7: warning: unused variable 'i' [-Wunused-variable]
   int i,j,k,renum[F_NRE];
       ^
../../../src/gmxlib/tpxio.c: In function 'do_groups':
../../../src/gmxlib/tpxio.c:1276:10: warning: unused variable 'n' [-Wunused-variable]
   int  g,n,i;
          ^
../../../src/gmxlib/tpxio.c: In function 'do_moltype':
../../../src/gmxlib/tpxio.c:1393:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/gmxlib/tpxio.c: In function 'do_molblock':
../../../src/gmxlib/tpxio.c:1420:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/gmxlib/tpxio.c: In function 'do_mtop':
../../../src/gmxlib/tpxio.c:1547:14: warning: unused variable 'i' [-Wunused-variable]
   int  mt,mb,i;
              ^
../../../src/gmxlib/tpxio.c: In function 'read_tpx_top':
../../../src/gmxlib/tpxio.c:2005:15: warning: unused variable 'ltop' [-Wunused-variable]
   t_topology *ltop;
               ^~~~
../../../src/gmxlib/tpxio.c: In function 'read_tps_conf':
../../../src/gmxlib/tpxio.c:2035:17: warning: unused variable 'topconv' [-Wunused-variable]
   t_topology   *topconv;
                 ^~~~~~~
In file included from ../../../src/gmxlib/tpxio.c:61:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/tpxio.c:61:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/gmxlib/tpxio.c:60:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_arpack.lo ../../../src/gmxlib/gmx_arpack.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/gmx_arpack.c  -fPIC -DPIC -o .libs/gmx_arpack.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -version-info 5:0:0 -lgslcblas  -o libgmx_mpi.la -rpath /usr/lib 3dview.lo atomprop.lo bondfree.lo calcgrid.lo calch.lo checkpoint.lo confio.lo copyrite.lo disre.lo do_fit.lo enxio.lo ewald_util.lo gmx_fatal.lo ffscanf.lo filenm.lo futil.lo gbutil.lo gmxfio.lo ifunc.lo index.lo cinvsqrtdata.lo invblock.lo macros.lo orires.lo sparsematrix.lo main.lo maths.lo matio.lo mshift.lo mtop_util.lo mtxio.lo mvdata.lo names.lo network.lo nrama.lo nrjac.lo nrnb.lo pargs.lo pbc.lo pdbio.lo princ.lo rando.lo random.lo gmx_random.lo rbin.lo readinp.lo replace.lo rmpbc.lo shift_util.lo sortwater.lo smalloc.lo statutil.lo strdb.lo string2.lo symtab.lo topsort.lo tpxio.lo trnio.lo trxio.lo txtdump.lo typedefs.lo viewit.lo wgms.lo wman.lo writeps.lo xdrd.lo xtcio.lo xvgr.lo libxdrf.lo gmx_arpack.lo dihres.lo tcontrol.lo splitter.lo gmx_cyclecounter.lo nonbonded/libnonbonded.la gmx_blas/libblas.la        gmx_lapack/liblapack.la -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
mpicc -shared  .libs/3dview.o .libs/atomprop.o .libs/bondfree.o .libs/calcgrid.o .libs/calch.o .libs/checkpoint.o .libs/confio.o .libs/copyrite.o .libs/disre.o .libs/do_fit.o .libs/enxio.o .libs/ewald_util.o .libs/gmx_fatal.o .libs/ffscanf.o .libs/filenm.o .libs/futil.o .libs/gbutil.o .libs/gmxfio.o .libs/ifunc.o .libs/index.o .libs/cinvsqrtdata.o .libs/invblock.o .libs/macros.o .libs/orires.o .libs/sparsematrix.o .libs/main.o .libs/maths.o .libs/matio.o .libs/mshift.o .libs/mtop_util.o .libs/mtxio.o .libs/mvdata.o .libs/names.o .libs/network.o .libs/nrama.o .libs/nrjac.o .libs/nrnb.o .libs/pargs.o .libs/pbc.o .libs/pdbio.o .libs/princ.o .libs/rando.o .libs/random.o .libs/gmx_random.o .libs/rbin.o .libs/readinp.o .libs/replace.o .libs/rmpbc.o .libs/shift_util.o .libs/sortwater.o .libs/smalloc.o .libs/statutil.o .libs/strdb.o .libs/string2.o .libs/symtab.o .libs/topsort.o .libs/tpxio.o .libs/trnio.o .libs/trxio.o .libs/txtdump.o .libs/typedefs.o .libs/viewit.o .libs/wgms.o .libs/wman.o .libs/writeps.o .libs/xdrd.o .libs/xtcio.o .libs/xvgr.o .libs/libxdrf.o .libs/gmx_arpack.o .libs/dihres.o .libs/tcontrol.o .libs/splitter.o .libs/gmx_cyclecounter.o -Wl,--whole-archive nonbonded/.libs/libnonbonded.a gmx_blas/.libs/libblas.a gmx_lapack/.libs/liblapack.a -Wl,--no-whole-archive  -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lgslcblas -lgsl -lfftw3f -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath  -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wl,-soname -Wl,libgmx_mpi.so.5 -o .libs/libgmx_mpi.so.5.0.0
(cd .libs && rm -f libgmx_mpi.so.5 && ln -s libgmx_mpi.so.5.0.0 libgmx_mpi.so.5)
(cd .libs && rm -f libgmx_mpi.so && ln -s libgmx_mpi.so.5.0.0 libgmx_mpi.so)
creating libgmx_mpi.la
(cd .libs && rm -f libgmx_mpi.la && ln -s ../libgmx_mpi.la libgmx_mpi.la)
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
Making all in mdlib
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o domdec_network.lo ../../../src/mdlib/domdec_network.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/domdec_network.c  -fPIC -DPIC -o .libs/domdec_network.o
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o calcmu.lo ../../../src/mdlib/calcmu.c
mkdir .libs
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/calcmu.c  -fPIC -DPIC -o .libs/calcmu.o
In file included from ../../../src/mdlib/calcmu.c:45:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/calcmu.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o calcvir.lo ../../../src/mdlib/calcvir.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/calcvir.c  -fPIC -DPIC -o .libs/calcvir.o
../../../src/mdlib/calcvir.c:160:13: warning: 'lo_fcv2' defined but not used [-Wunused-function]
 static void lo_fcv2(int i0,int i1,
             ^~~~~~~
../../../src/mdlib/calcvir.c:47:13: warning: 'dprod1' defined but not used [-Wunused-function]
 static void dprod1(rvec vir,real x,rvec f)
             ^~~~~~
In file included from ../../../src/mdlib/calcvir.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/calcvir.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/mdlib/calcvir.c:42:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o domdec_setup.lo ../../../src/mdlib/domdec_setup.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/domdec_setup.c  -fPIC -DPIC -o .libs/domdec_setup.o
../../../src/mdlib/domdec_setup.c: In function 'guess_npme':
../../../src/mdlib/domdec_setup.c:83:13: warning: unused variable 'try' [-Wunused-variable]
  t_inputrec try;
             ^~~
../../../src/mdlib/domdec_setup.c:82:16: warning: unused variable 'nky' [-Wunused-variable]
  int  npme,nkx,nky,ndiv,*div,*mdiv,ldiv;
                ^~~
../../../src/mdlib/domdec_setup.c:82:12: warning: unused variable 'nkx' [-Wunused-variable]
  int  npme,nkx,nky,ndiv,*div,*mdiv,ldiv;
            ^~~
../../../src/mdlib/domdec_setup.c: In function 'assign_factors':
../../../src/mdlib/domdec_setup.c:329:13: warning: unused variable 'z' [-Wunused-variable]
     int x,y,z,i;
             ^
../../../src/mdlib/domdec_setup.c: In function 'dd_choose_grid':
../../../src/mdlib/domdec_setup.c:493:19: warning: unused variable 'nky' [-Wunused-variable]
     int  npme,nkx,nky;
                   ^~~
../../../src/mdlib/domdec_setup.c:493:15: warning: unused variable 'nkx' [-Wunused-variable]
     int  npme,nkx,nky;
               ^~~
../../../src/mdlib/domdec_setup.c:493:10: warning: unused variable 'npme' [-Wunused-variable]
     int  npme,nkx,nky;
          ^~~~
In file included from ../../../src/mdlib/domdec_setup.c:32:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/domdec_setup.c:32:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/pme.h:46,
                 from ../../../src/mdlib/domdec_setup.c:29:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o ewald.lo ../../../src/mdlib/ewald.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/ewald.c  -fPIC -DPIC -o .libs/ewald.o
In file included from ../../../src/mdlib/ewald.c:44:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/mdlib/ewald.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/ewald.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o ebin.lo ../../../src/mdlib/ebin.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/ebin.c  -fPIC -DPIC -o .libs/ebin.o
../../../src/mdlib/ebin.c: In function 'add_ebin':
../../../src/mdlib/ebin.c:89:18: warning: unused variable 'sigma' [-Wunused-variable]
   double   e,sum,sigma,invmm,diff;
                  ^~~~~
../../../src/mdlib/ebin.c:89:14: warning: unused variable 'sum' [-Wunused-variable]
   double   e,sum,sigma,invmm,diff;
              ^~~
In file included from ../../../src/mdlib/ebin.c:51:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/mdlib/ebin.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o domdec_con.lo ../../../src/mdlib/domdec_con.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/domdec_con.c  -fPIC -DPIC -o .libs/domdec_con.o
../../../src/mdlib/domdec_con.c: In function 'dd_make_local_vsites':
../../../src/mdlib/domdec_con.c:925:25: warning: unused variable 'gat' [-Wunused-variable]
     int  ftype,nral,i,j,gat,a;
                         ^~~
../../../src/mdlib/domdec_con.c: In function 'init_domdec_vsites':
../../../src/mdlib/domdec_con.c:1047:31: warning: unused variable 'dc' [-Wunused-variable]
     gmx_domdec_constraints_t *dc;
                               ^~
In file included from ../../../src/mdlib/domdec_con.c:25:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/domdec_con.c:25:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o coupling.lo ../../../src/mdlib/coupling.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/coupling.c  -fPIC -DPIC -o .libs/coupling.o
../../../src/mdlib/coupling.c: In function 'berendsen_pcoupl':
../../../src/mdlib/coupling.c:267:11: warning: unused variable 'ptr' [-Wunused-variable]
   char   *ptr,buf[STRLEN];
           ^~~
In file included from ../../../include/pull.h:44,
                 from ../../../include/update.h:49,
                 from ../../../src/mdlib/coupling.c:42:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../include/pull.h:44,
                 from ../../../include/update.h:49,
                 from ../../../src/mdlib/coupling.c:42:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/update.h:48,
                 from ../../../src/mdlib/coupling.c:42:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o fftgrid.lo ../../../src/mdlib/fftgrid.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/fftgrid.c  -fPIC -DPIC -o .libs/fftgrid.o
In file included from ../../../include/fftgrid.h:46,
                 from ../../../src/mdlib/fftgrid.c:51:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o constr.lo ../../../src/mdlib/constr.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/constr.c  -fPIC -DPIC -o .libs/constr.o
../../../src/mdlib/constr.c: In function 'too_many_constraint_warnings':
../../../src/mdlib/constr.c:132:9: warning: unused variable 'abort' [-Wunused-variable]
   char *abort="- aborting to avoid logfile runaway.\n"
         ^~~~~
../../../src/mdlib/constr.c: In function 'constrain':
../../../src/mdlib/constr.c:234:11: warning: unused variable 'ncons' [-Wunused-variable]
   int     ncons,error;
           ^~~~~
../../../src/mdlib/constr.c: In function 'init_constraints':
../../../src/mdlib/constr.c:772:37: warning: unused variable 'natoms' [-Wunused-variable]
   int  ncon,nset,nmol,settle_type,i,natoms,mt,nflexcon;
                                     ^~~~~~
../../../src/mdlib/constr.c: In function 'inter_charge_group_constraints':
../../../src/mdlib/constr.c:903:8: warning: unused variable 'nat' [-Wunused-variable]
   int  nat,*at2cg,cg,a,i;
        ^~~
At top level:
../../../src/mdlib/constr.c:110:12: warning: 'icomp' defined but not used [-Wunused-function]
 static int icomp(const void *p1, const void *p2)
            ^~~~~
In file included from ../../../src/mdlib/constr.c:53:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
In file included from ../../../include/pull.h:44,
                 from ../../../include/mdrun.h:56,
                 from ../../../src/mdlib/constr.c:45:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../include/pull.h:44,
                 from ../../../include/mdrun.h:56,
                 from ../../../src/mdlib/constr.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/mdrun.h:50,
                 from ../../../src/mdlib/constr.c:45:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/constr.c:42:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o init.lo ../../../src/mdlib/init.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/init.c  -fPIC -DPIC -o .libs/init.o
In file included from ../../../include/statutil.h:51,
                 from ../../../src/mdlib/init.c:52:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../include/mdrun.h:50,
                 from ../../../src/mdlib/init.c:51:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/init.c:44:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/init.c:44:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o ghat.lo ../../../src/mdlib/ghat.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/ghat.c  -fPIC -DPIC -o .libs/ghat.o
In file included from ../../../include/pppm.h:46,
                 from ../../../src/mdlib/ghat.c:47:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/mdlib/ghat.c:44:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/ghat.c:44:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o edsam.lo ../../../src/mdlib/edsam.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/edsam.c  -fPIC -DPIC -o .libs/edsam.o
../../../src/mdlib/edsam.c:983:13: warning: 'get_flood_energies' defined but not used [-Wunused-function]
 static void get_flood_energies(t_edpar *edi, real Vfl[],int nnames)
             ^~~~~~~~~~~~~~~~~~
../../../src/mdlib/edsam.c:964:13: warning: 'get_flood_enx_names' defined but not used [-Wunused-function]
 static void get_flood_enx_names(t_edpar *edi, char** names, int *nnames)  /* get header of energies */
             ^~~~~~~~~~~~~~~~~~~
../../../src/mdlib/edsam.c:459:13: warning: 'dump_mat' defined but not used [-Wunused-function]
 static void dump_mat(FILE* out, int dim, double** mat)
             ^~~~~~~~
../../../src/mdlib/edsam.c:448:13: warning: 'dump_rvec' defined but not used [-Wunused-function]
 static void dump_rvec(FILE *out, int dim, rvec *x)
             ^~~~~~~~~
../../../src/mdlib/edsam.c:439:13: warning: 'dump_rotmat' defined but not used [-Wunused-function]
 static void dump_rotmat(FILE* out,matrix rotmat)
             ^~~~~~~~~~~
../../../src/mdlib/edsam.c:387:13: warning: 'dump_edi' defined but not used [-Wunused-function]
 static void dump_edi(t_edpar *edpars, t_commrec *cr, int nr_edi)
             ^~~~~~~~
../../../src/mdlib/edsam.c:316:13: warning: 'dump_xcoll' defined but not used [-Wunused-function]
 static void dump_xcoll(t_edpar *edi, struct t_do_edsam *buf, t_commrec *cr, int step)
             ^~~~~~~~~~
In file included from ../../../include/mdrun.h:50,
                 from ../../../src/mdlib/edsam.c:53:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/edsam.c:49:
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/edsam.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o mdatom.lo ../../../src/mdlib/mdatom.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/mdatom.c  -fPIC -DPIC -o .libs/mdatom.o
../../../src/mdlib/mdatom.c: In function 'init_mdatoms':
../../../src/mdlib/mdatom.c:56:12: warning: unused variable 'ilist' [-Wunused-variable]
   t_ilist *ilist;
            ^~~~~
../../../src/mdlib/mdatom.c:51:17: warning: unused variable 'nmol' [-Wunused-variable]
   int    mb,a,g,nmol;
                 ^~~~
../../../src/mdlib/mdatom.c:51:15: warning: unused variable 'g' [-Wunused-variable]
   int    mb,a,g,nmol;
               ^
../../../src/mdlib/mdatom.c:51:10: warning: unused variable 'mb' [-Wunused-variable]
   int    mb,a,g,nmol;
          ^~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o mvxvf.lo ../../../src/mdlib/mvxvf.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/mvxvf.c  -fPIC -DPIC -o .libs/mvxvf.o
In file included from ../../../src/mdlib/mvxvf.c:52:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/mvxvf.c:52:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o force.lo ../../../src/mdlib/force.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/force.c  -fPIC -DPIC -o .libs/force.o
../../../src/mdlib/force.c: In function 'check_solvent_cg':
../../../src/mdlib/force.c:162:23: warning: unused variable 'excl' [-Wunused-variable]
     const t_blocka *  excl;
                       ^~~~
../../../src/mdlib/force.c: In function 'check_solvent':
../../../src/mdlib/force.c:406:23: warning: variable 'mols' set but not used [-Wunused-but-set-variable]
     const t_block *   mols;
                       ^~~~
../../../src/mdlib/force.c: In function 'set_avcsixtwelve':
../../../src/mdlib/force.c:687:46: warning: unused variable 'n' [-Wunused-variable]
     int    mb,nmol,nmolc,i,j,tpi,tpj,j1,j2,k,n,nexcl,q;
                                              ^
../../../src/mdlib/force.c: In function 'init_forcerec':
../../../src/mdlib/force.c:1048:16: warning: variable 'nbl' set but not used [-Wunused-but-set-variable]
     t_nblists *nbl;
                ^~~
../../../src/mdlib/force.c:1043:26: warning: unused variable 'ngrp' [-Wunused-variable]
     int     i,j,m,natoms,ngrp,negp_pp,negptable,egi,egj;
                          ^~~~
../../../src/mdlib/force.c:1043:15: warning: unused variable 'j' [-Wunused-variable]
     int     i,j,m,natoms,ngrp,negp_pp,negptable,egi,egj;
               ^
../../../src/mdlib/force.c: In function 'do_force_lowlevel':
../../../src/mdlib/force.c:1540:13: warning: unused variable 'bDoEpot' [-Wunused-variable]
     bool    bDoEpot,bSepDVDL,bSB;
             ^~~~~~~
../../../src/mdlib/force.c:1539:15: warning: unused variable 'nit' [-Wunused-variable]
     int     i,nit,status;
               ^~~
In file included from ../../../src/mdlib/force.c:69:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/pull.h:44,
                 from ../../../include/mdrun.h:56,
                 from ../../../src/mdlib/force.c:64:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../include/pull.h:44,
                 from ../../../include/mdrun.h:56,
                 from ../../../src/mdlib/force.c:64:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/pppm.h:46,
                 from ../../../src/mdlib/force.c:62:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o domdec_top.lo ../../../src/mdlib/domdec_top.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/domdec_top.c  -fPIC -DPIC -o .libs/domdec_top.o
../../../src/mdlib/domdec_top.c: In function 'print_missing_interactions_mb':
../../../src/mdlib/domdec_top.c:113:56: warning: unused variable 'a_gl' [-Wunused-variable]
     int ftype,ftype_j,nral,i,j_mol,j,k,a0,a0_mol,mol,a,a_gl;
                                                        ^~~~
../../../src/mdlib/domdec_top.c:113:38: warning: unused variable 'k' [-Wunused-variable]
     int ftype,ftype_j,nral,i,j_mol,j,k,a0,a0_mol,mol,a,a_gl;
                                      ^
../../../src/mdlib/domdec_top.c: In function 'global_atomnr_to_moltype_ind':
../../../src/mdlib/domdec_top.c:349:7: warning: unused variable 'molb' [-Wunused-variable]
   int molb;
       ^~~~
../../../src/mdlib/domdec_top.c: In function 'count_excls':
../../../src/mdlib/domdec_top.c:364:11: warning: unused variable 'n_inter' [-Wunused-variable]
     int n,n_inter,cg,at0,at1,at,excl,atj;
           ^~~~~~~
../../../src/mdlib/domdec_top.c: In function 'dd_make_reverse_top':
../../../src/mdlib/domdec_top.c:611:19: warning: unused variable 'n_recursive_vsite' [-Wunused-variable]
     int mb,natoms,n_recursive_vsite,nexcl,nexcl_icg,a;
                   ^~~~~~~~~~~~~~~~~
../../../src/mdlib/domdec_top.c: In function 'add_vsite':
../../../src/mdlib/domdec_top.c:760:37: warning: unused variable 'iatoms_r' [-Wunused-variable]
     t_iatom tiatoms[1+MAXATOMLIST],*iatoms_r;
                                     ^~~~~~~~
../../../src/mdlib/domdec_top.c: In function 'dd_make_local_top':
../../../src/mdlib/domdec_top.c:1408:10: warning: unused variable 'bUniqueExcl' [-Wunused-variable]
     bool bUniqueExcl,bRCheckMB,bRCheck2B,bRCheckExcl;
          ^~~~~~~~~~~
../../../src/mdlib/domdec_top.c: In function 'check_link':
../../../src/mdlib/domdec_top.c:1590:12: warning: unused variable 'aj' [-Wunused-variable]
     int  k,aj;
            ^~
In file included from ../../../src/mdlib/domdec_top.c:31:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/domdec_top.c:31:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o mdebin.lo ../../../src/mdlib/mdebin.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/mdebin.c  -fPIC -DPIC -o .libs/mdebin.o
../../../src/mdlib/mdebin.c: In function 'print_ebin':
../../../src/mdlib/mdebin.c:530:31: warning: unused variable 'nor' [-Wunused-variable]
   int         i,j,n,ni,nj,ndr,nor;
                               ^~~
../../../src/mdlib/mdebin.c:530:27: warning: unused variable 'ndr' [-Wunused-variable]
   int         i,j,n,ni,nj,ndr,nor;
                           ^~~
In file included from ../../../src/mdlib/mdebin.c:48:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/mdebin.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nsgrid.lo ../../../src/mdlib/nsgrid.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/nsgrid.c  -fPIC -DPIC -o .libs/nsgrid.o
../../../src/mdlib/nsgrid.c: In function 'init_grid':
../../../src/mdlib/nsgrid.c:181:10: warning: unused variable 'm' [-Wunused-variable]
   int  d,m;
          ^
../../../src/mdlib/nsgrid.c:181:8: warning: unused variable 'd' [-Wunused-variable]
   int  d,m;
        ^
../../../src/mdlib/nsgrid.c: In function 'grid_first':
../../../src/mdlib/nsgrid.c:278:10: warning: unused variable 'cx' [-Wunused-variable]
   ivec   cx;
          ^~
../../../src/mdlib/nsgrid.c: In function 'fill_grid':
../../../src/mdlib/nsgrid.c:421:10: warning: variable 'nrx' set but not used [-Wunused-but-set-variable]
   int    nrx,nry,nrz;
          ^~~
In file included from ../../../src/mdlib/nsgrid.c:47:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/nsgrid.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o perf_est.lo ../../../src/mdlib/perf_est.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/perf_est.c  -fPIC -DPIC -o .libs/perf_est.o
../../../src/mdlib/perf_est.c: In function 'n_bonded_dx':
../../../src/mdlib/perf_est.c:62:2: warning: label 'F_CONNBONDS' defined but not used [-Wunused-label]
  F_CONNBONDS: ndxb = 0; break;
  ^~~~~~~~~~~
../../../src/mdlib/perf_est.c:61:2: warning: label 'F_POSRES' defined but not used [-Wunused-label]
  F_POSRES:    ndxb = 1; break;
  ^~~~~~~~
../../../src/mdlib/perf_est.c: In function 'pme_load_estimate':
../../../src/mdlib/perf_est.c:89:21: warning: unused variable 'fljtab' [-Wunused-variable]
   float fq,fqlj,flj,fljtab,fqljw,fqw,fqspread,ffft,fbond;
                     ^~~~~~
In file included from ../../../src/mdlib/perf_est.c:41:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/perf_est.c:41:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o pme_pp.lo ../../../src/mdlib/pme_pp.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/pme_pp.c  -fPIC -DPIC -o .libs/pme_pp.o
In file included from ../../../include/pme.h:46,
                 from ../../../src/mdlib/pme_pp.c:49:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/mdlib/pme_pp.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/pme_pp.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o pullutil.lo ../../../src/mdlib/pullutil.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/pullutil.c  -fPIC -DPIC -o .libs/pullutil.o
../../../src/mdlib/pullutil.c: In function 'pull_set_pbcatom':
../../../src/mdlib/pullutil.c:85:9: warning: unused variable 'm' [-Wunused-variable]
   int a,m;
         ^
../../../src/mdlib/pullutil.c: In function 'pull_calc_coms':
../../../src/mdlib/pullutil.c:278:9: warning: unused variable 'xx' [-Wunused-variable]
   rvec *xx[2],x_pbc={0,0,0},dx;
         ^~
In file included from ../../../src/mdlib/pullutil.c:46:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/pullutil.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/mdlib/pullutil.c:45:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o pme.lo ../../../src/mdlib/pme.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/pme.c  -fPIC -DPIC -o .libs/pme.o
../../../src/mdlib/pme.c: In function 'init_atomcomm':
../../../src/mdlib/pme.c:1441:22: warning: unused variable 'pgc' [-Wunused-variable]
     pme_grid_comm_t *pgc;
                      ^~~
../../../src/mdlib/pme.c:1440:12: warning: unused variable 'nk' [-Wunused-variable]
     int nn,nk;
            ^~
../../../src/mdlib/pme.c:1440:9: warning: unused variable 'nn' [-Wunused-variable]
     int nn,nk;
         ^~
../../../src/mdlib/pme.c:1439:27: warning: unused variable 'i' [-Wunused-variable]
     int lbnd,rbnd,maxlr,b,i;
                           ^
../../../src/mdlib/pme.c:1439:25: warning: unused variable 'b' [-Wunused-variable]
     int lbnd,rbnd,maxlr,b,i;
                         ^
../../../src/mdlib/pme.c:1439:19: warning: unused variable 'maxlr' [-Wunused-variable]
     int lbnd,rbnd,maxlr,b,i;
                   ^~~~~
../../../src/mdlib/pme.c:1439:14: warning: unused variable 'rbnd' [-Wunused-variable]
     int lbnd,rbnd,maxlr,b,i;
              ^~~~
../../../src/mdlib/pme.c:1439:9: warning: unused variable 'lbnd' [-Wunused-variable]
     int lbnd,rbnd,maxlr,b,i;
         ^~~~
../../../src/mdlib/pme.c: In function 'gmx_pme_init':
../../../src/mdlib/pme.c:1541:25: warning: unused variable 'maxlr' [-Wunused-variable]
     int b,d,i,lbnd,rbnd,maxlr;
                         ^~~~~
../../../src/mdlib/pme.c:1541:20: warning: unused variable 'rbnd' [-Wunused-variable]
     int b,d,i,lbnd,rbnd,maxlr;
                    ^~~~
../../../src/mdlib/pme.c:1541:15: warning: unused variable 'lbnd' [-Wunused-variable]
     int b,d,i,lbnd,rbnd,maxlr;
               ^~~~
../../../src/mdlib/pme.c:1541:11: warning: unused variable 'd' [-Wunused-variable]
     int b,d,i,lbnd,rbnd,maxlr;
           ^
../../../src/mdlib/pme.c:1541:9: warning: unused variable 'b' [-Wunused-variable]
     int b,d,i,lbnd,rbnd,maxlr;
         ^
At top level:
../../../src/mdlib/pme.c:198:13: warning: 'pr_grid_dist' defined but not used [-Wunused-function]
 static void pr_grid_dist(FILE *fp,char *title,t_fftgrid *grid)
             ^~~~~~~~~~~~
In file included from ../../../src/mdlib/pme.c:81:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/pme.c:71:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/mdlib/pme.c:70:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/pme.c:70:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o partdec.lo ../../../src/mdlib/partdec.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/partdec.c  -fPIC -DPIC -o .libs/partdec.o
../../../src/mdlib/partdec.c: In function 'gmx_tx':
../../../src/mdlib/partdec.c:83:14: warning: unused variable 'status' [-Wunused-variable]
   MPI_Status status;
              ^~~~~~
../../../src/mdlib/partdec.c:82:18: warning: unused variable 'flag' [-Wunused-variable]
   int        tag,flag;
                  ^~~~
../../../src/mdlib/partdec.c: In function 'pr_idef_division':
../../../src/mdlib/partdec.c:343:15: warning: variable 'nr' set but not used [-Wunused-but-set-variable]
   int i,ftype,nr,nra,m0,m1;
               ^~
../../../src/mdlib/partdec.c: In function 'create_vsitelist':
../../../src/mdlib/partdec.c:477:7: warning: unused variable 'minidx' [-Wunused-variable]
   int minidx;
       ^~~~~~
../../../src/mdlib/partdec.c: In function 'setup_parallel_vsites':
../../../src/mdlib/partdec.c:511:15: warning: unused variable 'k' [-Wunused-variable]
   int i,inr,j,k,ftype;
               ^
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o pppm.lo ../../../src/mdlib/pppm.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/pppm.c  -fPIC -DPIC -o .libs/pppm.o
../../../src/mdlib/pppm.c:616:12: warning: 'gmx_pppm_opt_do' defined but not used [-Wunused-function]
 static int gmx_pppm_opt_do(FILE *log,       gmx_pme_t pme,
            ^~~~~~~~~~~~~~~
In file included from ../../../include/mdrun.h:50,
                 from ../../../src/mdlib/pppm.c:53:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../include/pppm.h:46,
                 from ../../../src/mdlib/pppm.c:51:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/mdlib/pppm.c:45:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/pppm.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o rf_util.lo ../../../src/mdlib/rf_util.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/rf_util.c  -fPIC -DPIC -o .libs/rf_util.o
../../../src/mdlib/rf_util.c: In function 'RF_excl_correction':
../../../src/mdlib/rf_util.c:59:10: warning: unused variable 'top' [-Wunused-variable]
   int    top,i,j,j1,j2,k,ki;
          ^~~
In file included from ../../../src/mdlib/rf_util.c:46:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/rf_util.c:44:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/rf_util.c:44:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/mdlib/rf_util.c:42:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o domdec.lo ../../../src/mdlib/domdec.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/domdec.c  -fPIC -DPIC -o .libs/domdec.o
../../../src/mdlib/domdec.c: In function 'dd_move_cellx':
../../../src/mdlib/domdec.c:785:41: warning: unused variable 'k' [-Wunused-variable]
     int  d,d1,dim,dim1,pos,buf_size,i,j,k,p,npulse;
                                         ^
../../../src/mdlib/domdec.c:785:19: warning: unused variable 'dim1' [-Wunused-variable]
     int  d,d1,dim,dim1,pos,buf_size,i,j,k,p,npulse;
                   ^~~~
../../../src/mdlib/domdec.c: In function 'dd_collect_vec':
../../../src/mdlib/domdec.c:1212:11: warning: unused variable 'buf' [-Wunused-variable]
     rvec *buf=NULL;
           ^~~
../../../src/mdlib/domdec.c:1211:18: warning: unused variable 'nalloc' [-Wunused-variable]
     int  n,i,c,a,nalloc=0;
                  ^~~~~~
../../../src/mdlib/domdec.c:1211:16: warning: unused variable 'a' [-Wunused-variable]
     int  n,i,c,a,nalloc=0;
                ^
../../../src/mdlib/domdec.c:1211:14: warning: unused variable 'c' [-Wunused-variable]
     int  n,i,c,a,nalloc=0;
              ^
../../../src/mdlib/domdec.c:1211:12: warning: unused variable 'i' [-Wunused-variable]
     int  n,i,c,a,nalloc=0;
            ^
../../../src/mdlib/domdec.c:1211:10: warning: unused variable 'n' [-Wunused-variable]
     int  n,i,c,a,nalloc=0;
          ^
../../../src/mdlib/domdec.c:1210:26: warning: unused variable 'ma' [-Wunused-variable]
     gmx_domdec_master_t *ma;
                          ^~
../../../src/mdlib/domdec.c: In function 'dd_distribute_vec_scatterv':
../../../src/mdlib/domdec.c:1427:18: warning: unused variable 'nalloc' [-Wunused-variable]
     int  n,i,c,a,nalloc=0;
                  ^~~~~~
../../../src/mdlib/domdec.c: In function 'gmx_ddcoord2pmeindex':
../../../src/mdlib/domdec.c:1805:28: warning: unused variable 'nc' [-Wunused-variable]
     ivec coords,coords_pme,nc;
                            ^~
../../../src/mdlib/domdec.c:1805:17: warning: unused variable 'coords_pme' [-Wunused-variable]
     ivec coords,coords_pme,nc;
                 ^~~~~~~~~~
../../../src/mdlib/domdec.c: In function 'make_dd_indices':
../../../src/mdlib/domdec.c:2107:11: warning: variable 'bLocalCG' set but not used [-Wunused-but-set-variable]
     char *bLocalCG;
           ^~~~~~~~
../../../src/mdlib/domdec.c: In function 'check_bLocalCG':
../../../src/mdlib/domdec.c:2162:9: warning: unused variable 'ncg' [-Wunused-variable]
     int ncg,i,ngl,nerr;
         ^~~
../../../src/mdlib/domdec.c: In function 'dd_redistribute_cg':
../../../src/mdlib/domdec.c:3706:49: warning: unused variable 'cell_d' [-Wunused-variable]
     int  c,i,cg,k,k0,k1,d,dim,dim2,dir,d2,d3,d4,cell_d;
                                                 ^~~~~~
../../../src/mdlib/domdec.c:3706:46: warning: unused variable 'd4' [-Wunused-variable]
     int  c,i,cg,k,k0,k1,d,dim,dim2,dir,d2,d3,d4,cell_d;
                                              ^~
../../../src/mdlib/domdec.c: In function 'get_load_distribution':
../../../src/mdlib/domdec.c:4326:16: warning: unused variable 'cid' [-Wunused-variable]
     int  d,dim,cid,i,pos;
                ^~~
../../../src/mdlib/domdec.c: In function 'setup_dd_grid':
../../../src/mdlib/domdec.c:4781:10: warning: unused variable 'bZYX' [-Wunused-variable]
     bool bZYX;
          ^~~~
../../../src/mdlib/domdec.c: In function 'check_dlb_support':
../../../src/mdlib/domdec.c:5598:9: warning: label 'edlbYES' defined but not used [-Wunused-label]
         edlbYES:
         ^~~~~~~
../../../src/mdlib/domdec.c:5594:9: warning: label 'edlbAUTO' defined but not used [-Wunused-label]
         edlbAUTO:
         ^~~~~~~~
../../../src/mdlib/domdec.c:5592:9: warning: label 'edlbNO' defined but not used [-Wunused-label]
         edlbNO:
         ^~~~~~
../../../src/mdlib/domdec.c:5553:19: warning: unused variable 'dd' [-Wunused-variable]
     gmx_domdec_t *dd;
                   ^~
../../../src/mdlib/domdec.c: In function 'init_domain_decomposition':
../../../src/mdlib/domdec.c:5652:14: warning: unused variable 'j' [-Wunused-variable]
     int  d,i,j;
              ^
../../../src/mdlib/domdec.c:5652:12: warning: unused variable 'i' [-Wunused-variable]
     int  d,i,j;
            ^
../../../src/mdlib/domdec.c:5652:10: warning: unused variable 'd' [-Wunused-variable]
     int  d,i,j;
          ^
../../../src/mdlib/domdec.c: In function 'turn_on_dlb':
../../../src/mdlib/domdec.c:6010:10: warning: unused variable 'buf' [-Wunused-variable]
     char buf[STRLEN];
          ^~~
../../../src/mdlib/domdec.c: In function 'dd_init_bondeds':
../../../src/mdlib/domdec.c:6086:10: warning: unused variable 'd' [-Wunused-variable]
     int  d;
          ^
../../../src/mdlib/domdec.c:6085:10: warning: unused variable 'bBondComm' [-Wunused-variable]
     bool bBondComm;
          ^~~~~~~~~
../../../src/mdlib/domdec.c: In function 'setup_dd_communication':
../../../src/mdlib/domdec.c:6486:64: warning: unused variable 'inv_ncg' [-Wunused-variable]
     real r_mb,r_comm2,r_scomm2,r_bcomm2,r,r_0,r_1,r2,rb2,r2inc,inv_ncg,tric_sh;
                                                                ^~~~~~~
../../../src/mdlib/domdec.c:6486:58: warning: unused variable 'r2inc' [-Wunused-variable]
     real r_mb,r_comm2,r_scomm2,r_bcomm2,r,r_0,r_1,r2,rb2,r2inc,inv_ncg,tric_sh;
                                                          ^~~~~
../../../src/mdlib/domdec.c:6486:47: warning: unused variable 'r_1' [-Wunused-variable]
     real r_mb,r_comm2,r_scomm2,r_bcomm2,r,r_0,r_1,r2,rb2,r2inc,inv_ncg,tric_sh;
                                               ^~~
../../../src/mdlib/domdec.c:6486:43: warning: unused variable 'r_0' [-Wunused-variable]
     real r_mb,r_comm2,r_scomm2,r_bcomm2,r,r_0,r_1,r2,rb2,r2inc,inv_ncg,tric_sh;
                                           ^~~
../../../src/mdlib/domdec.c:6486:23: warning: unused variable 'r_scomm2' [-Wunused-variable]
     real r_mb,r_comm2,r_scomm2,r_bcomm2,r,r_0,r_1,r2,rb2,r2inc,inv_ncg,tric_sh;
                       ^~~~~~~~
../../../src/mdlib/domdec.c:6486:10: warning: unused variable 'r_mb' [-Wunused-variable]
     real r_mb,r_comm2,r_scomm2,r_bcomm2,r,r_0,r_1,r2,rb2,r2inc,inv_ncg,tric_sh;
          ^~~~
../../../src/mdlib/domdec.c: In function 'dd_partition_system':
../../../src/mdlib/domdec.c:7481:12: warning: unused variable 'j' [-Wunused-variable]
     int  i,j,n,cg0=0,ncg_home_old=-1;
            ^
In file included from ../../../include/mdrun.h:50,
                 from ../../../src/mdlib/domdec.c:44:
At top level:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../include/pme.h:46,
                 from ../../../src/mdlib/domdec.c:41:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/mdlib/domdec.c:31:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/domdec.c:31:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o pull.lo ../../../src/mdlib/pull.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/pull.c  -fPIC -DPIC -o .libs/pull.o
../../../src/mdlib/pull.c: In function 'apply_forces_grp':
../../../src/mdlib/pull.c:155:20: warning: variable 'end' set but not used [-Wunused-but-set-variable]
   int i,ii,m,start,end;
                    ^~~
../../../src/mdlib/pull.c: In function 'do_constraint':
../../../src/mdlib/pull.c:283:22: warning: unused variable 'mass' [-Wunused-variable]
   double lambda, rm, mass, invdt=0;
                      ^~~~
../../../src/mdlib/pull.c:282:10: warning: unused variable 'd0' [-Wunused-variable]
   double d0,inpr;
          ^~
../../../src/mdlib/pull.c: In function 'init_pull_group_index':
../../../src/mdlib/pull.c:779:16: warning: variable 'ga2la' set but not used [-Wunused-but-set-variable]
   gmx_ga2la_t *ga2la=NULL;
                ^~~~~
In file included from ../../../include/mdrun.h:50,
                 from ../../../src/mdlib/pull.c:60:
At top level:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/pull.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/pull.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/mdlib/pull.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
../../../src/mdlib/pull.c: In function 'open_pull_out.part.3':
../../../src/mdlib/pull.c:134:19: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=]
    sprintf(buf,"%d",g);
                   ^
In file included from /usr/include/stdio.h:862,
                 from ../../../src/mdlib/pull.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 2 and 11 bytes into a destination of size 10
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/mdlib/pull.c:128:23: warning: ' ' directive writing 1 byte into a region of size between 0 and 9 [-Wformat-overflow=]
        sprintf(buf,"%d %s%c",g,(bCoord && g > 0)?"d":"",'X'+m);
                       ^
In file included from /usr/include/stdio.h:862,
                 from ../../../src/mdlib/pull.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 4 and 14 bytes into a destination of size 10
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o shakef.lo ../../../src/mdlib/shakef.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/shakef.c  -fPIC -DPIC -o .libs/shakef.o
../../../src/mdlib/shakef.c: In function 'cshake':
../../../src/mdlib/shakef.c:79:19: warning: unused variable 'tjz' [-Wunused-variable]
   real    tjx,tjy,tjz;
                   ^~~
../../../src/mdlib/shakef.c:79:15: warning: unused variable 'tjy' [-Wunused-variable]
   real    tjx,tjy,tjz;
               ^~~
../../../src/mdlib/shakef.c:79:11: warning: unused variable 'tjx' [-Wunused-variable]
   real    tjx,tjy,tjz;
           ^~~
../../../src/mdlib/shakef.c:78:19: warning: unused variable 'tiz' [-Wunused-variable]
   real    tix,tiy,tiz;
                   ^~~
../../../src/mdlib/shakef.c:78:15: warning: unused variable 'tiy' [-Wunused-variable]
   real    tix,tiy,tiz;
               ^~~
../../../src/mdlib/shakef.c:78:11: warning: unused variable 'tix' [-Wunused-variable]
   real    tix,tiy,tiz;
           ^~~
At top level:
../../../src/mdlib/shakef.c:51:13: warning: 'pv' defined but not used [-Wunused-function]
 static void pv(FILE *log,char *s,rvec x)
             ^~
In file included from ../../../src/mdlib/shakef.c:46:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/shakef.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o ns.lo ../../../src/mdlib/ns.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/ns.c  -fPIC -DPIC -o .libs/ns.o
../../../src/mdlib/ns.c: In function 'new_i_nblist':
../../../src/mdlib/ns.c:394:20: warning: unused variable 'nshift' [-Wunused-variable]
     int    i,k,nri,nshift;
                    ^~~~~~
../../../src/mdlib/ns.c:394:14: warning: unused variable 'k' [-Wunused-variable]
     int    i,k,nri,nshift;
              ^
../../../src/mdlib/ns.c:394:12: warning: unused variable 'i' [-Wunused-variable]
     int    i,k,nri,nshift;
            ^
../../../src/mdlib/ns.c: In function 'put_in_list':
../../../src/mdlib/ns.c:546:25: warning: unused variable 'rlj' [-Wunused-variable]
     real      qi,qiB,qq,rlj;
                         ^~~
../../../src/mdlib/ns.c:546:22: warning: unused variable 'qq' [-Wunused-variable]
     real      qi,qiB,qq,rlj;
                      ^~
../../../src/mdlib/ns.c:541:23: warning: unused variable 'len' [-Wunused-variable]
     int       i0,nicg,len;
                       ^~~
../../../src/mdlib/ns.c:539:39: warning: unused variable 'ind_ij' [-Wunused-variable]
     int      i,j,jcg,igid,gid,nbl_ind,ind_ij;
                                       ^~~~~~
../../../src/mdlib/ns.c: In function 'ns_inner_tric':
../../../src/mdlib/ns.c:1283:15: warning: unused variable 'nsbuf' [-Wunused-variable]
     t_ns_buf *nsbuf;
               ^~~~~
../../../src/mdlib/ns.c: In function 'ns_inner_rect':
../../../src/mdlib/ns.c:1314:15: warning: unused variable 'nsbuf' [-Wunused-variable]
     t_ns_buf *nsbuf;
               ^~~~~
../../../src/mdlib/ns.c: In function 'ns_simple_core':
../../../src/mdlib/ns.c:1365:38: warning: unused variable 'nri' [-Wunused-variable]
     int      nsearch,icg,jcg,igid,i0,nri,nn;
                                      ^~~
../../../src/mdlib/ns.c:1365:35: warning: unused variable 'i0' [-Wunused-variable]
     int      nsearch,icg,jcg,igid,i0,nri,nn;
                                   ^~
../../../src/mdlib/ns.c:1365:26: warning: unused variable 'jcg' [-Wunused-variable]
     int      nsearch,icg,jcg,igid,i0,nri,nn;
                          ^~~
../../../src/mdlib/ns.c: In function 'nsgrid_core':
../../../src/mdlib/ns.c:1674:58: warning: unused variable 'dcz' [-Wunused-variable]
     real    r2,rs2,rvdw2,rcoul2,rm2,rl2,XI,YI,ZI,dcx,dcy,dcz,tmp1,tmp2;
                                                          ^~~
../../../src/mdlib/ns.c:1674:54: warning: unused variable 'dcy' [-Wunused-variable]
     real    r2,rs2,rvdw2,rcoul2,rm2,rl2,XI,YI,ZI,dcx,dcy,dcz,tmp1,tmp2;
                                                      ^~~
../../../src/mdlib/ns.c:1674:50: warning: unused variable 'dcx' [-Wunused-variable]
     real    r2,rs2,rvdw2,rcoul2,rm2,rl2,XI,YI,ZI,dcx,dcy,dcz,tmp1,tmp2;
                                                  ^~~
../../../src/mdlib/ns.c:1673:13: warning: unused variable 'xi' [-Wunused-variable]
     rvec    xi,*cgcm,grid_offset;
             ^~
../../../src/mdlib/ns.c:1669:42: warning: unused variable 'nri' [-Wunused-variable]
     int     cg0,cg1,icg=-1,cgsnr,i0,igid,nri,naaj,max_jcg;
                                          ^~~
../../../src/mdlib/ns.c:1666:45: warning: variable 'grid_z' set but not used [-Wunused-but-set-variable]
     real    gridx,gridy,gridz,grid_x,grid_y,grid_z;
                                             ^~~~~~
../../../src/mdlib/ns.c: In function 'init_ns':
../../../src/mdlib/ns.c:2177:11: warning: unused variable 'ptr' [-Wunused-variable]
     char *ptr;
           ^~~
../../../src/mdlib/ns.c: In function 'search_neighbours':
../../../src/mdlib/ns.c:2280:23: warning: unused variable 'cg_end' [-Wunused-variable]
     int      cg_start,cg_end,start,end;
                       ^~~~~~
../../../src/mdlib/ns.c:2280:14: warning: unused variable 'cg_start' [-Wunused-variable]
     int      cg_start,cg_end,start,end;
              ^~~~~~~~
../../../src/mdlib/ns.c:2279:15: warning: unused variable 'i_egp_flags' [-Wunused-variable]
     bool     *i_egp_flags;
               ^~~~~~~~~~~
../../../src/mdlib/ns.c:2278:15: warning: unused variable 'ptr' [-Wunused-variable]
     char     *ptr;
               ^~~
../../../src/mdlib/ns.c:2274:16: warning: unused variable 'j' [-Wunused-variable]
     int      i,j,m,ngid;
                ^
../../../src/mdlib/ns.c:2274:14: warning: unused variable 'i' [-Wunused-variable]
     int      i,j,m,ngid;
              ^
In file included from ../../../src/mdlib/ns.c:54:
At top level:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/ns.c:51:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/mdlib/ns.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o stat.lo ../../../src/mdlib/stat.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/stat.c  -fPIC -DPIC -o .libs/stat.o
In file included from ../../../include/statutil.h:51,
                 from ../../../src/mdlib/stat.c:63:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/mdlib/stat.c:53:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/stat.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/stat.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o tgroup.lo ../../../src/mdlib/tgroup.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/tgroup.c  -fPIC -DPIC -o .libs/tgroup.o
../../../src/mdlib/tgroup.c: In function 'init_grptcstat':
../../../src/mdlib/tgroup.c:57:9: warning: unused variable 'j' [-Wunused-variable]
   int i,j;
         ^
At top level:
../../../src/mdlib/tgroup.c:141:13: warning: 'accumulate_ekin' defined but not used [-Wunused-function]
 static void accumulate_ekin(t_commrec *cr,t_grpopts *opts,
             ^~~~~~~~~~~~~~~
In file included from ../../../include/update.h:48,
                 from ../../../src/mdlib/tgroup.c:51:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/tgroup.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/tgroup.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o vcm.lo ../../../src/mdlib/vcm.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/vcm.c  -fPIC -DPIC -o .libs/vcm.o
../../../src/mdlib/vcm.c: In function 'calc_vcm_grp':
../../../src/mdlib/vcm.c:122:28: warning: unused variable 'zz' [-Wunused-variable]
   real   m0,xx,xy,xz,yy,yz,zz;
                            ^~
../../../src/mdlib/vcm.c:122:25: warning: unused variable 'yz' [-Wunused-variable]
   real   m0,xx,xy,xz,yy,yz,zz;
                         ^~
../../../src/mdlib/vcm.c:122:22: warning: unused variable 'yy' [-Wunused-variable]
   real   m0,xx,xy,xz,yy,yz,zz;
                      ^~
../../../src/mdlib/vcm.c:122:19: warning: unused variable 'xz' [-Wunused-variable]
   real   m0,xx,xy,xz,yy,yz,zz;
                   ^~
../../../src/mdlib/vcm.c:122:16: warning: unused variable 'xy' [-Wunused-variable]
   real   m0,xx,xy,xz,yy,yz,zz;
                ^~
../../../src/mdlib/vcm.c:122:13: warning: unused variable 'xx' [-Wunused-variable]
   real   m0,xx,xy,xz,yy,yz,zz;
             ^~
../../../src/mdlib/vcm.c: In function 'do_stopcm_grp':
../../../src/mdlib/vcm.c:171:11: warning: unused variable 'tm_1' [-Wunused-variable]
   real tm,tm_1;
           ^~~~
../../../src/mdlib/vcm.c:171:8: warning: unused variable 'tm' [-Wunused-variable]
   real tm,tm_1;
        ^~
../../../src/mdlib/vcm.c:170:12: warning: unused variable 'm' [-Wunused-variable]
   int  i,g,m;
            ^
../../../src/mdlib/vcm.c: In function 'check_cm_grp':
../../../src/mdlib/vcm.c:250:14: warning: unused variable 'Tcm' [-Wunused-variable]
   tensor Icm,Tcm;
              ^~~
In file included from ../../../src/mdlib/vcm.c:43:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/vcm.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o tables.lo ../../../src/mdlib/tables.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/tables.c  -fPIC -DPIC -o .libs/tables.o
../../../src/mdlib/tables.c: In function 'done_tabledata':
../../../src/mdlib/tables.c:470:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/mdlib/tables.c: In function 'make_tables':
../../../src/mdlib/tables.c:835:17: warning: unused variable 'j' [-Wunused-variable]
   int         i,j,k,nx,nx0,tabsel[etiNR];
                 ^
../../../src/mdlib/tables.c: In function 'make_bonded_table':
../../../src/mdlib/tables.c:950:10: warning: variable 'start' set but not used [-Wunused-but-set-variable]
   double start;
          ^~~~~
At top level:
../../../src/mdlib/tables.c:155:13: warning: 'splint' defined but not used [-Wunused-function]
 static void splint(real xa[],real ya[],real y2a[],
             ^~~~~~
In file included from ../../../src/mdlib/tables.c:51:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/tables.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/tables.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o wall.lo ../../../src/mdlib/wall.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/wall.c  -fPIC -DPIC -o .libs/wall.o
../../../src/mdlib/wall.c: In function 'do_walls':
../../../src/mdlib/wall.c:107:47: warning: unused variable 'Heps' [-Wunused-variable]
   real tabscale,*VFtab,rt,eps,eps2,Yt,Ft,Geps,Heps,Heps2,Fp,VV,FF;
                                               ^~~~
../../../src/mdlib/wall.c:103:50: warning: variable 'Fwall' set but not used [-Wunused-but-set-variable]
   real *nbfp,lamfac,fac_d[2],fac_r[2],Cd,Cr,Vtot,Fwall[2];
                                                  ^~~~~
In file included from ../../../src/mdlib/wall.c:48:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/wall.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/mdlib/wall.c:45:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o wnblist.lo ../../../src/mdlib/wnblist.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/wnblist.c  -fPIC -DPIC -o .libs/wnblist.o
../../../src/mdlib/wnblist.c: In function 'read_nblist':
../../../src/mdlib/wnblist.c:135:27: warning: unused variable 'icmp' [-Wunused-variable]
     int  i,ii,j,nnbl,full,icmp,nri,isolv;
                           ^~~~
../../../src/mdlib/wnblist.c:135:22: warning: unused variable 'full' [-Wunused-variable]
     int  i,ii,j,nnbl,full,icmp,nri,isolv;
                      ^~~~
../../../src/mdlib/wnblist.c:135:17: warning: unused variable 'nnbl' [-Wunused-variable]
     int  i,ii,j,nnbl,full,icmp,nri,isolv;
                 ^~~~
../../../src/mdlib/wnblist.c:134:26: warning: unused variable 'b2' [-Wunused-variable]
     char buf[256],b1[32],b2[32],solv[256],il_code[256];
                          ^~
../../../src/mdlib/wnblist.c:134:19: warning: unused variable 'b1' [-Wunused-variable]
     char buf[256],b1[32],b2[32],solv[256],il_code[256];
                   ^~
../../../src/mdlib/wnblist.c:133:10: warning: unused variable 'bNL' [-Wunused-variable]
     bool bNL;
          ^~~
In file included from ../../../src/mdlib/wnblist.c:44:
At top level:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o vsite.lo ../../../src/mdlib/vsite.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/vsite.c  -fPIC -DPIC -o .libs/vsite.o
../../../src/mdlib/vsite.c: In function 'constr_vsiten':
../../../src/mdlib/vsite.c:437:8: warning: unused variable 'xs' [-Wunused-variable]
   rvec xs,x1,dx;
        ^~
../../../src/mdlib/vsite.c: In function 'construct_vsites':
../../../src/mdlib/vsite.c:484:25: warning: unused variable 'rtmp' [-Wunused-variable]
   rvec      reftmp,vtmp,rtmp;
                         ^~~~
../../../src/mdlib/vsite.c:484:20: warning: unused variable 'vtmp' [-Wunused-variable]
   rvec      reftmp,vtmp,rtmp;
                    ^~~~
../../../src/mdlib/vsite.c:484:13: warning: unused variable 'reftmp' [-Wunused-variable]
   rvec      reftmp,vtmp,rtmp;
             ^~~~~~
../../../src/mdlib/vsite.c:478:19: warning: unused variable 'ii' [-Wunused-variable]
   int       i,inc,ii,nra,nr,tp,ftype;
                   ^~
../../../src/mdlib/vsite.c: In function 'spread_vsite2':
../../../src/mdlib/vsite.c:655:11: warning: unused variable 'b' [-Wunused-variable]
   real    b;
           ^
../../../src/mdlib/vsite.c: In function 'spread_vsite3FD':
../../../src/mdlib/vsite.c:770:23: warning: unused variable 'd' [-Wunused-variable]
   int     svi,sji,skj,d;
                       ^
../../../src/mdlib/vsite.c:767:14: warning: unused variable 'fz' [-Wunused-variable]
   real fx,fy,fz,c,invl,fproj,a1;
              ^~
../../../src/mdlib/vsite.c:767:11: warning: unused variable 'fy' [-Wunused-variable]
   real fx,fy,fz,c,invl,fproj,a1;
           ^~
../../../src/mdlib/vsite.c:767:8: warning: unused variable 'fx' [-Wunused-variable]
   real fx,fy,fz,c,invl,fproj,a1;
        ^~
../../../src/mdlib/vsite.c: In function 'spread_vsite_f':
../../../src/mdlib/vsite.c:1255:19: warning: unused variable 'm' [-Wunused-variable]
   int       i,inc,m,nra,nr,tp,ftype;
                   ^
../../../src/mdlib/vsite.c: In function 'count_intercg_vsite':
../../../src/mdlib/vsite.c:1409:11: warning: unused variable 'mt' [-Wunused-variable]
   int  mb,mt,ftype,nral,i,cg,a;
           ^~
../../../src/mdlib/vsite.c: In function 'get_vsite_pbc':
../../../src/mdlib/vsite.c:1448:38: warning: unused variable 'cg_c' [-Wunused-variable]
   int  ftype,nral,i,j,vsi,vsite,cg_v,cg_c,a,nc3=0;
                                      ^~~~
../../../src/mdlib/vsite.c: In function 'init_vsite':
../../../src/mdlib/vsite.c:1559:13: warning: unused variable 'cg' [-Wunused-variable]
   int *a2cg,cg;
             ^~
In file included from ../../../src/mdlib/vsite.c:46:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/vsite.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o shellfc.lo ../../../src/mdlib/shellfc.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/shellfc.c  -fPIC -DPIC -o .libs/shellfc.o
../../../src/mdlib/shellfc.c: In function 'predict_shells':
../../../src/mdlib/shellfc.c:115:18: warning: unused variable 'dt_3' [-Wunused-variable]
   real dt_1,dt_2,dt_3,fudge,tm,m1,m2,m3;
                  ^~~~
../../../src/mdlib/shellfc.c:115:13: warning: unused variable 'dt_2' [-Wunused-variable]
   real dt_1,dt_2,dt_3,fudge,tm,m1,m2,m3;
             ^~~~
../../../src/mdlib/shellfc.c: In function 'init_shell_flexcon':
../../../src/mdlib/shellfc.c:197:32: warning: unused variable 'mt' [-Wunused-variable]
   int         i,j,nmol,type,mb,mt,a_offset,cg,mol,ftype,nra;
                                ^~
../../../src/mdlib/shellfc.c:197:19: warning: unused variable 'nmol' [-Wunused-variable]
   int         i,j,nmol,type,mb,mt,a_offset,cg,mol,ftype,nra;
                   ^~~~
../../../src/mdlib/shellfc.c: In function 'init_adir':
../../../src/mdlib/shellfc.c:694:12: warning: unused variable 'dx' [-Wunused-variable]
   rvec   p,dx;
            ^~
../../../src/mdlib/shellfc.c:694:10: warning: unused variable 'p' [-Wunused-variable]
   rvec   p,dx;
          ^
../../../src/mdlib/shellfc.c:691:13: warning: unused variable 'scale' [-Wunused-variable]
   real   dt,scale;
             ^~~~~
../../../src/mdlib/shellfc.c:690:16: warning: unused variable 'gt' [-Wunused-variable]
   int    gf,ga,gt;
                ^~
../../../src/mdlib/shellfc.c:690:13: warning: unused variable 'ga' [-Wunused-variable]
   int    gf,ga,gt;
             ^~
../../../src/mdlib/shellfc.c:690:10: warning: unused variable 'gf' [-Wunused-variable]
   int    gf,ga,gt;
          ^~
../../../src/mdlib/shellfc.c: In function 'relax_shell_flexcon':
../../../src/mdlib/shellfc.c:776:19: warning: unused variable 'g' [-Wunused-variable]
   int    nflexcon,g,number_steps,d,Min=0,count=0;
                   ^
../../../src/mdlib/shellfc.c:772:10: warning: unused variable 'cbuf' [-Wunused-variable]
   char   cbuf[56];
          ^~~~
../../../src/mdlib/shellfc.c:771:19: warning: unused variable 'xiS' [-Wunused-variable]
   real   ftol,xiH,xiS,dum=0;
                   ^~~
../../../src/mdlib/shellfc.c:771:15: warning: unused variable 'xiH' [-Wunused-variable]
   real   ftol,xiH,xiS,dum=0;
               ^~~
../../../src/mdlib/shellfc.c:769:10: warning: unused variable 'dx' [-Wunused-variable]
   rvec   dx;
          ^~
In file included from ../../../src/mdlib/shellfc.c:55:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/mdrun.h:50,
                 from ../../../src/mdlib/shellfc.c:45:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/shellfc.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/shellfc.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o csettle.lo ../../../src/mdlib/csettle.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/csettle.c  -fPIC -DPIC -o .libs/csettle.o
../../../src/mdlib/csettle.c: In function 'xshake':
../../../src/mdlib/csettle.c:183:39: warning: unused variable 'conv' [-Wunused-variable]
   int i,ll,ii,jj,l3,ix,iy,iz,jx,jy,jz,conv;
                                       ^~~~
../../../src/mdlib/csettle.c: In function 'csettle':
../../../src/mdlib/csettle.c:298:10: warning: unused variable 'shakeret' [-Wunused-variable]
   int i, shakeret, ow1, hw2, hw3;
          ^~~~~~~~
In file included from ../../../src/mdlib/csettle.c:42:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/csettle.c:42:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o clincs.lo ../../../src/mdlib/clincs.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/clincs.c  -fPIC -DPIC -o .libs/clincs.o
../../../src/mdlib/clincs.c: In function 'do_lincsp':
../../../src/mdlib/clincs.c:189:54: warning: unused variable 'lam' [-Wunused-variable]
     real    tmp0,tmp1,tmp2,im1,im2,mvb,rlen,len,wfac,lam;
                                                      ^~~
../../../src/mdlib/clincs.c:189:49: warning: unused variable 'wfac' [-Wunused-variable]
     real    tmp0,tmp1,tmp2,im1,im2,mvb,rlen,len,wfac,lam;
                                                 ^~~~
../../../src/mdlib/clincs.c:189:45: warning: unused variable 'len' [-Wunused-variable]
     real    tmp0,tmp1,tmp2,im1,im2,mvb,rlen,len,wfac,lam;
                                             ^~~
../../../src/mdlib/clincs.c:189:40: warning: unused variable 'rlen' [-Wunused-variable]
     real    tmp0,tmp1,tmp2,im1,im2,mvb,rlen,len,wfac,lam;
                                        ^~~~
../../../src/mdlib/clincs.c: In function 'set_lincs':
../../../src/mdlib/clincs.c:764:14: warning: variable 'bLocal' set but not used [-Wunused-but-set-variable]
     bool     bLocal;
              ^~~~~~
../../../src/mdlib/clincs.c: In function 'constrain_lincs':
../../../src/mdlib/clincs.c:1084:25: warning: unused variable 'error' [-Wunused-variable]
     int   i,warn,p_imax,error;
                         ^~~~~
At top level:
../../../src/mdlib/clincs.c:1034:13: warning: 'dump_conf' defined but not used [-Wunused-function]
 static void dump_conf(gmx_domdec_t *dd,struct gmx_lincsdata *li,
             ^~~~~~~~~
In file included from ../../../include/mdrun.h:50,
                 from ../../../src/mdlib/clincs.c:50:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/clincs.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/clincs.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/mdlib/clincs.c:45:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o update.lo ../../../src/mdlib/update.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/update.c  -fPIC -DPIC -o .libs/update.o
../../../src/mdlib/update.c: In function 'update':
../../../src/mdlib/update.c:771:39: warning: unused variable 'g' [-Wunused-variable]
   int              start,homenr,i,n,m,g;
                                       ^
../../../src/mdlib/update.c:770:20: warning: variable 'dt_1' set but not used [-Wunused-but-set-variable]
   real             dt_1;
                    ^~~~
In file included from ../../../src/mdlib/update.c:62:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/update.h:48,
                 from ../../../src/mdlib/update.c:53:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/update.c:50:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/update.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o minimize.lo ../../../src/mdlib/minimize.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/minimize.c  -fPIC -DPIC -o .libs/minimize.o
../../../src/mdlib/minimize.c: In function 'get_f_norm_max':
../../../src/mdlib/minimize.c:153:14: warning: unused variable 'fmax2_0' [-Wunused-variable]
   real fmax2,fmax2_0,fam;
              ^~~~~~~
../../../src/mdlib/minimize.c: In function 'evaluate_energy':
../../../src/mdlib/minimize.c:573:12: warning: unused variable 'state' [-Wunused-variable]
   t_state *state;
            ^~~~~
../../../src/mdlib/minimize.c: In function 'do_cg':
../../../src/mdlib/minimize.c:813:10: warning: unused variable 'terminate' [-Wunused-variable]
   real   terminate=0;
          ^~~~~~~~~
../../../src/mdlib/minimize.c:798:26: warning: unused variable 'sum' [-Wunused-variable]
   double gpa,gpb,gpc,tmp,sum[2],minstep;
                          ^~~
../../../src/mdlib/minimize.c:797:28: warning: unused variable 'sfm' [-Wunused-variable]
   rvec   *f_global,*p,*sf,*sfm;
                            ^~~
../../../src/mdlib/minimize.c: In function 'do_lbfgs':
../../../src/mdlib/minimize.c:1329:10: warning: unused variable 'terminate' [-Wunused-variable]
   real   terminate;
          ^~~~~~~~~
../../../src/mdlib/minimize.c:1320:20: warning: variable 'first' set but not used [-Wunused-but-set-variable]
   bool   converged,first;
                    ^~~~~
../../../src/mdlib/minimize.c: In function 'do_steep':
../../../src/mdlib/minimize.c:1957:10: warning: unused variable 'terminate' [-Wunused-variable]
   real   terminate=0;
          ^~~~~~~~~
../../../src/mdlib/minimize.c:1946:16: warning: unused variable 'dvdlambda' [-Wunused-variable]
   real   ustep,dvdlambda,fnormn;
                ^~~~~~~~~
../../../src/mdlib/minimize.c:1945:19: warning: unused variable 'constepsize' [-Wunused-variable]
   real   stepsize,constepsize;
                   ^~~~~~~~~~~
../../../src/mdlib/minimize.c: In function 'do_nm':
../../../src/mdlib/minimize.c:2163:22: warning: unused variable 'fmax' [-Wunused-variable]
     real       fnorm,fmax;
                      ^~~~
../../../src/mdlib/minimize.c:2163:16: warning: unused variable 'fnorm' [-Wunused-variable]
     real       fnorm,fmax;
                ^~~~~
../../../src/mdlib/minimize.c:2151:16: warning: unused variable 'nfmax' [-Wunused-variable]
     int        nfmax,count;
                ^~~~~
../../../src/mdlib/minimize.c:2149:16: warning: unused variable 'bNS' [-Wunused-variable]
     bool       bNS;
                ^~~
../../../src/mdlib/minimize.c:2148:18: warning: variable 'lambda' set but not used [-Wunused-but-set-variable]
     real       t,lambda,t0,lam0;
                  ^~~~~~
../../../src/mdlib/minimize.c: In function 'do_tpi':
../../../src/mdlib/minimize.c:2419:18: warning: unused variable 'end' [-Wunused-variable]
   int    i,start,end;
                  ^~~
../../../src/mdlib/minimize.c:2419:12: warning: unused variable 'start' [-Wunused-variable]
   int    i,start,end;
            ^~~~~
../../../src/mdlib/minimize.c:2404:15: warning: unused variable 'TPI' [-Wunused-variable]
   const char *TPI="Test Particle Insertion";
               ^~~
At top level:
../../../src/mdlib/minimize.c:515:13: warning: 'do_x_sub' defined but not used [-Wunused-function]
 static void do_x_sub(t_commrec *cr,int n,rvec *x1,rvec *x2,real a,rvec *f)
             ^~~~~~~~
../../../src/mdlib/minimize.c:493:13: warning: 'do_x_step' defined but not used [-Wunused-function]
 static void do_x_step(t_commrec *cr,int n,rvec *x1,real a,rvec *f,rvec *x2)
             ^~~~~~~~~
In file included from ../../../include/pme.h:46,
                 from ../../../src/mdlib/minimize.c:83:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/mdlib/minimize.c:63:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../include/pull.h:44,
                 from ../../../include/update.h:49,
                 from ../../../src/mdlib/minimize.c:59:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../include/pull.h:44,
                 from ../../../include/update.h:49,
                 from ../../../src/mdlib/minimize.c:59:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/mdlib/minimize.c:47:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o sim_util.lo ../../../src/mdlib/sim_util.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/sim_util.c  -fPIC -DPIC -o .libs/sim_util.o
../../../src/mdlib/sim_util.c: In function 'calc_virial':
../../../src/mdlib/sim_util.c:250:10: warning: unused variable 'virtest' [-Wunused-variable]
   tensor virtest;
          ^~~~~~~
../../../src/mdlib/sim_util.c:249:9: warning: unused variable 'j' [-Wunused-variable]
   int i,j;
         ^
../../../src/mdlib/sim_util.c: In function 'do_force':
../../../src/mdlib/sim_util.c:348:15: warning: unused variable 'box_size' [-Wunused-variable]
   static rvec box_size;
               ^~~~~~~~
../../../src/mdlib/sim_util.c: In function 'calc_enervirdiff':
../../../src/mdlib/sim_util.c:823:13: warning: variable 'r1' set but not used [-Wunused-but-set-variable]
   double r0,r1,r,rc3,rc9,ea,eb,ec,pa,pb,pc,pd;
             ^~
../../../src/mdlib/sim_util.c: In function 'finish_run':
../../../src/mdlib/sim_util.c:1134:14: warning: unused variable 'status' [-Wunused-variable]
   MPI_Status status;
              ^~~~~~
../../../src/mdlib/sim_util.c:1133:10: warning: unused variable 'nrnb_buf' [-Wunused-variable]
   double nrnb_buf[4];
          ^~~~~~~~
../../../src/mdlib/sim_util.c:1132:10: warning: unused variable 'sender' [-Wunused-variable]
   int    sender;
          ^~~~~~
../../../src/mdlib/sim_util.c: In function 'init_md':
../../../src/mdlib/sim_util.c:1222:13: warning: unused variable 'mod' [-Wunused-variable]
   real tmpt,mod;
             ^~~
../../../src/mdlib/sim_util.c:1222:8: warning: unused variable 'tmpt' [-Wunused-variable]
   real tmpt,mod;
        ^~~~
../../../src/mdlib/sim_util.c:1221:12: warning: unused variable 'n' [-Wunused-variable]
   int  i,j,n;
            ^
../../../src/mdlib/sim_util.c:1221:10: warning: unused variable 'j' [-Wunused-variable]
   int  i,j,n;
          ^
At top level:
../../../src/mdlib/sim_util.c:348:15: warning: 'box_size' defined but not used [-Wunused-variable]
   static rvec box_size;
               ^~~~~~~~
In file included from ../../../src/mdlib/sim_util.c:78:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/pme.h:46,
                 from ../../../src/mdlib/sim_util.c:68:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/mdlib/sim_util.c:57:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/sim_util.c:57:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o qm_gaussian.lo ../../../src/mdlib/qm_gaussian.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/qm_gaussian.c  -fPIC -DPIC -o .libs/qm_gaussian.o
../../../src/mdlib/qm_gaussian.c: In function 'init_gaussian':
../../../src/mdlib/qm_gaussian.c:73:6: warning: unused variable 'rffile' [-Wunused-variable]
     *rffile=NULL,*out=NULL;
      ^~~~~~
In file included from ../../../src/mdlib/qm_gaussian.c:60:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/qm_gaussian.c:49:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/qm_gaussian.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/qm_gaussian.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_fft_fftw3.lo ../../../src/mdlib/gmx_fft_fftw3.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/gmx_fft_fftw3.c  -fPIC -DPIC -o .libs/gmx_fft_fftw3.o
In file included from ../../../include/gmx_fft.h:41,
                 from ../../../src/mdlib/gmx_fft_fftw3.c:27:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_fft.lo ../../../src/mdlib/gmx_fft.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/gmx_fft.c  -fPIC -DPIC -o .libs/gmx_fft.o
In file included from ../../../src/mdlib/gmx_fft.c:30:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_wallcycle.lo ../../../src/mdlib/gmx_wallcycle.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/gmx_wallcycle.c  -fPIC -DPIC -o .libs/gmx_wallcycle.o
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_parallel_3dfft.lo ../../../src/mdlib/gmx_parallel_3dfft.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/gmx_parallel_3dfft.c  -fPIC -DPIC -o .libs/gmx_parallel_3dfft.o
../../../src/mdlib/gmx_parallel_3dfft.c: In function 'gmx_parallel_3dfft':
../../../src/mdlib/gmx_parallel_3dfft.c:283:22: warning: unused variable 'k' [-Wunused-variable]
     int          i,j,k;
                      ^
../../../src/mdlib/gmx_parallel_3dfft.c: In function 'gmx_parallel_3dfft_complex2real':
../../../src/mdlib/gmx_parallel_3dfft.c:484:18: warning: variable 'cdata' set but not used [-Wunused-but-set-variable]
     t_complex *  cdata;
                  ^~~~~
../../../src/mdlib/gmx_parallel_3dfft.c:483:18: warning: variable 'work' set but not used [-Wunused-but-set-variable]
     t_complex *  work;
                  ^~~~
../../../src/mdlib/gmx_parallel_3dfft.c:480:24: warning: variable 'nzc' set but not used [-Wunused-but-set-variable]
     int          nx,ny,nzc;
                        ^~~
../../../src/mdlib/gmx_parallel_3dfft.c:480:21: warning: variable 'ny' set but not used [-Wunused-but-set-variable]
     int          nx,ny,nzc;
                     ^~
../../../src/mdlib/gmx_parallel_3dfft.c:480:18: warning: variable 'nx' set but not used [-Wunused-but-set-variable]
     int          nx,ny,nzc;
                  ^~
../../../src/mdlib/gmx_parallel_3dfft.c:479:22: warning: unused variable 'k' [-Wunused-variable]
     int          i,j,k;
                      ^
../../../src/mdlib/gmx_parallel_3dfft.c:479:20: warning: unused variable 'j' [-Wunused-variable]
     int          i,j,k;
                    ^
../../../src/mdlib/gmx_parallel_3dfft.c:479:18: warning: unused variable 'i' [-Wunused-variable]
     int          i,j,k;
                  ^
In file included from ../../../include/gmx_parallel_3dfft.h:30,
                 from ../../../src/mdlib/gmx_parallel_3dfft.c:32:
At top level:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o qmmm.lo ../../../src/mdlib/qmmm.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/qmmm.c  -fPIC -DPIC -o .libs/qmmm.o
../../../src/mdlib/qmmm.c: In function 'update_QMMMrec':
../../../src/mdlib/qmmm.c:725:6: warning: unused variable 'MMatoms' [-Wunused-variable]
     *MMatoms;
      ^~~~~~~
../../../src/mdlib/qmmm.c:721:17: warning: variable 'QMMMlist_lr' set but not used [-Wunused-but-set-variable]
     QMMMlist_sr,QMMMlist_lr;
                 ^~~~~~~~~~~
At top level:
../../../src/mdlib/qmmm.c:131:12: warning: 'int_comp' defined but not used [-Wunused-function]
 static int int_comp(const void *a,const void *b){
            ^~~~~~~~
In file included from ../../../src/mdlib/qmmm.c:60:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/qmmm.c:49:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/qmmm.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/qmmm.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -version-info 5:0:0 -lgslcblas  -o libmd_mpi.la -rpath /usr/lib calcmu.lo calcvir.lo constr.lo coupling.lo domdec.lo domdec_con.lo domdec_network.lo domdec_setup.lo domdec_top.lo ebin.lo edsam.lo ewald.lo fftgrid.lo force.lo ghat.lo init.lo mdatom.lo mdebin.lo minimize.lo mvxvf.lo ns.lo nsgrid.lo perf_est.lo pme.lo pme_pp.lo pppm.lo partdec.lo pull.lo pullutil.lo rf_util.lo shakef.lo sim_util.lo shellfc.lo stat.lo tables.lo tgroup.lo update.lo vcm.lo vsite.lo wall.lo wnblist.lo csettle.lo clincs.lo qmmm.lo gmx_fft.lo gmx_parallel_3dfft.lo gmx_wallcycle.lo qm_gaussian.lo gmx_fft_fftw3.lo ../gmxlib/libgmx_mpi.la	 -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
mpicc -shared  .libs/calcmu.o .libs/calcvir.o .libs/constr.o .libs/coupling.o .libs/domdec.o .libs/domdec_con.o .libs/domdec_network.o .libs/domdec_setup.o .libs/domdec_top.o .libs/ebin.o .libs/edsam.o .libs/ewald.o .libs/fftgrid.o .libs/force.o .libs/ghat.o .libs/init.o .libs/mdatom.o .libs/mdebin.o .libs/minimize.o .libs/mvxvf.o .libs/ns.o .libs/nsgrid.o .libs/perf_est.o .libs/pme.o .libs/pme_pp.o .libs/pppm.o .libs/partdec.o .libs/pull.o .libs/pullutil.o .libs/rf_util.o .libs/shakef.o .libs/sim_util.o .libs/shellfc.o .libs/stat.o .libs/tables.o .libs/tgroup.o .libs/update.o .libs/vcm.o .libs/vsite.o .libs/wall.o .libs/wnblist.o .libs/csettle.o .libs/clincs.o .libs/qmmm.o .libs/gmx_fft.o .libs/gmx_parallel_3dfft.o .libs/gmx_wallcycle.o .libs/qm_gaussian.o .libs/gmx_fft_fftw3.o  -lgslcblas ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath  -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wl,-soname -Wl,libmd_mpi.so.5 -o .libs/libmd_mpi.so.5.0.0
(cd .libs && rm -f libmd_mpi.so.5 && ln -s libmd_mpi.so.5.0.0 libmd_mpi.so.5)
(cd .libs && rm -f libmd_mpi.so && ln -s libmd_mpi.so.5.0.0 libmd_mpi.so)
creating libmd_mpi.la
(cd .libs && rm -f libmd_mpi.la && ln -s ../libmd_mpi.la libmd_mpi.la)
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
Making all in kernel
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o compute_io.lo ../../../src/kernel/compute_io.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/compute_io.c  -fPIC -DPIC -o .libs/compute_io.o
../../../src/kernel/compute_io.c: In function 'compute_io':
../../../src/kernel/compute_io.c:49:53: warning: unused variable 'nfep' [-Wunused-variable]
   int nstx=0,nstv=0,nstf=0,nste=0,nstlog=0,nstxtc=0,nfep=0;
                                                     ^~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o genhydro.lo ../../../src/kernel/genhydro.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/genhydro.c  -fPIC -DPIC -o .libs/genhydro.o
In file included from ../../../src/kernel/hackblock.h:42,
                 from ../../../src/kernel/genhydro.h:41,
                 from ../../../src/kernel/genhydro.c:56:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/genhydro.h:40,
                 from ../../../src/kernel/genhydro.c:56:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/genhydro.c:51:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/genhydro.c:50:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/genhydro.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/genhydro.c:46:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o add_par.lo ../../../src/kernel/add_par.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/add_par.c  -fPIC -DPIC -o .libs/add_par.o
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/add_par.c:46:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/kernel/add_par.c:44:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o convparm.lo ../../../src/kernel/convparm.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/convparm.c  -fPIC -DPIC -o .libs/convparm.o
../../../src/kernel/convparm.c: In function 'new_interaction_list':
../../../src/kernel/convparm.c:404:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/kernel/convparm.c: In function 'convert_params':
../../../src/kernel/convparm.c:414:12: warning: unused variable 'j' [-Wunused-variable]
   int    i,j,maxtypes,mt;
            ^
At top level:
../../../src/kernel/convparm.c:402:13: warning: 'new_interaction_list' defined but not used [-Wunused-function]
 static void new_interaction_list(t_ilist *ilist)
             ^~~~~~~~~~~~~~~~~~~~
In file included from ../../../src/kernel/topio.h:41,
                 from ../../../src/kernel/convparm.c:48:
../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable]
 static const char *couple_lam[ecouplamNR+1]    = {
                    ^~~~~~~~~~
../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable]
 static const char *constraints[eshNR+1]    = {
                    ^~~~~~~~~~~
In file included from ../../../src/kernel/readir.h:43,
                 from ../../../src/kernel/topio.h:41,
                 from ../../../src/kernel/convparm.c:48:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/readir.h:42,
                 from ../../../src/kernel/topio.h:41,
                 from ../../../src/kernel/convparm.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/convparm.c:44:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/convparm.c:44:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gen_ad.lo ../../../src/kernel/gen_ad.c
mkdir .libs
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/gen_ad.c  -fPIC -DPIC -o .libs/gen_ad.o
../../../src/kernel/gen_ad.c: In function 'get_impropers':
../../../src/kernel/gen_ad.c:437:25: warning: unused variable 'r' [-Wunused-variable]
   int       nidih,i,j,k,r,start,ninc,nalloc;
                         ^
../../../src/kernel/gen_ad.c:436:15: warning: unused variable 'hbidih' [-Wunused-variable]
   t_rbonded  *hbidih;
               ^~~~~~
../../../src/kernel/gen_ad.c:434:14: warning: unused variable 'a0' [-Wunused-variable]
   char      *a0;
              ^~
../../../src/kernel/gen_ad.c: In function 'clean_excls':
../../../src/kernel/gen_ad.c:576:26: warning: unused variable 'n' [-Wunused-variable]
   int i,j,j1,k,k1,l,l1,m,n,e;
                          ^
../../../src/kernel/gen_ad.c:576:24: warning: unused variable 'm' [-Wunused-variable]
   int i,j,j1,k,k1,l,l1,m,n,e;
                        ^
../../../src/kernel/gen_ad.c: In function 'generate_excls':
../../../src/kernel/gen_ad.c:618:28: warning: unused variable 'e' [-Wunused-variable]
   int i,j,j1,k,k1,l,l1,m,n,e,N;
                            ^
../../../src/kernel/gen_ad.c:618:24: warning: unused variable 'm' [-Wunused-variable]
   int i,j,j1,k,k1,l,l1,m,n,e,N;
                        ^
../../../src/kernel/gen_ad.c:618:21: warning: unused variable 'l1' [-Wunused-variable]
   int i,j,j1,k,k1,l,l1,m,n,e,N;
                     ^~
../../../src/kernel/gen_ad.c:618:19: warning: unused variable 'l' [-Wunused-variable]
   int i,j,j1,k,k1,l,l1,m,n,e,N;
                   ^
../../../src/kernel/gen_ad.c:618:16: warning: unused variable 'k1' [-Wunused-variable]
   int i,j,j1,k,k1,l,l1,m,n,e,N;
                ^~
../../../src/kernel/gen_ad.c:618:14: warning: unused variable 'k' [-Wunused-variable]
   int i,j,j1,k,k1,l,l1,m,n,e,N;
              ^
../../../src/kernel/gen_ad.c:618:11: warning: unused variable 'j1' [-Wunused-variable]
   int i,j,j1,k,k1,l,l1,m,n,e,N;
           ^~
At top level:
../../../src/kernel/gen_ad.c:327:13: warning: 'dump_param' defined but not used [-Wunused-function]
 static void dump_param(FILE *fp,char *title,int n,t_param ps[])
             ^~~~~~~~~~
../../../src/kernel/gen_ad.c:289:13: warning: 'ideq' defined but not used [-Wunused-function]
 static bool ideq(t_param *p1, t_param *p2)
             ^~~~
../../../src/kernel/gen_ad.c:114:13: warning: 'aeq' defined but not used [-Wunused-function]
 static bool aeq(t_param *p1, t_param *p2)
             ^~~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/resall.h:41,
                 from ../../../src/kernel/gen_ad.c:57:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/kernel/topio.h:41,
                 from ../../../src/kernel/gen_ad.c:51:
../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable]
 static const char *couple_lam[ecouplamNR+1]    = {
                    ^~~~~~~~~~
../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable]
 static const char *constraints[eshNR+1]    = {
                    ^~~~~~~~~~~
In file included from ../../../src/kernel/readir.h:42,
                 from ../../../src/kernel/topio.h:41,
                 from ../../../src/kernel/gen_ad.c:51:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/toputil.h:40,
                 from ../../../src/kernel/gen_ad.c:50:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/gen_ad.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/gen_ad.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmxcpp.lo ../../../src/kernel/gmxcpp.c
mkdir .libs
mkdir: cannot create directory '.libs': File exists
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/gmxcpp.c  -fPIC -DPIC -o .libs/gmxcpp.o
../../../src/kernel/gmxcpp.c: In function 'cpp_close_file':
../../../src/kernel/gmxcpp.c:453:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o h_db.lo ../../../src/kernel/h_db.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/h_db.c  -fPIC -DPIC -o .libs/h_db.o
../../../src/kernel/h_db.c: In function 'dump_h_db':
../../../src/kernel/h_db.c:113:10: warning: unused variable 'j' [-Wunused-variable]
   int  i,j,k;
          ^
In file included from ../../../src/kernel/hackblock.h:42,
                 from ../../../src/kernel/h_db.h:41,
                 from ../../../src/kernel/h_db.c:47:
At top level:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/h_db.h:41,
                 from ../../../src/kernel/h_db.c:47:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gpp_atomtype.lo ../../../src/kernel/gpp_atomtype.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/gpp_atomtype.c  -fPIC -DPIC -o .libs/gpp_atomtype.o
In file included from ../../../src/kernel/topdirs.h:40,
                 from ../../../src/kernel/gpp_atomtype.c:45:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gpp_bond_atomtype.lo ../../../src/kernel/gpp_bond_atomtype.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/gpp_bond_atomtype.c  -fPIC -DPIC -o .libs/gpp_bond_atomtype.o
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o pgutil.lo ../../../src/kernel/pgutil.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/pgutil.c  -fPIC -DPIC -o .libs/pgutil.o
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o hizzie.lo ../../../src/kernel/hizzie.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/hizzie.c  -fPIC -DPIC -o .libs/hizzie.o
../../../src/kernel/hizzie.c: In function 'set_histp':
../../../src/kernel/hizzie.c:195:8: warning: unused variable 'd' [-Wunused-variable]
   real d;
        ^
../../../src/kernel/hizzie.c:192:27: warning: unused variable 'his0' [-Wunused-variable]
   int  i,j,nd,na,aj,hisnr,his0,type=-1;
                           ^~~~
../../../src/kernel/hizzie.c:192:18: warning: unused variable 'aj' [-Wunused-variable]
   int  i,j,nd,na,aj,hisnr,his0,type=-1;
                  ^~
../../../src/kernel/hizzie.c:188:15: warning: unused variable 'bHaveH' [-Wunused-variable]
   bool *hbond,bHaveH=FALSE;
               ^~~~~~
In file included from ../../../src/kernel/toputil.h:40,
                 from ../../../src/kernel/hizzie.c:48:
At top level:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/hizzie.c:46:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/hizzie.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/hizzie.c:44:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o hackblock.lo ../../../src/kernel/hackblock.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/hackblock.c  -fPIC -DPIC -o .libs/hackblock.o
In file included from ../../../src/kernel/hackblock.c:44:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/hackblock.c:44:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/hackblock.h:42,
                 from ../../../src/kernel/hackblock.c:42:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/hackblock.c:42:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o readpull.lo ../../../src/kernel/readpull.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/readpull.c  -fPIC -DPIC -o .libs/readpull.o
../../../src/kernel/readpull.c: In function 'read_pullparams':
../../../src/kernel/readpull.c:102:22: warning: unused variable 'nchar' [-Wunused-variable]
   int  ninp,nerror,i,nchar,ndim,nscan,m;
                      ^~~~~
In file included from ../../../src/kernel/readpull.c:54:
At top level:
../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable]
 static const char *couple_lam[ecouplamNR+1]    = {
                    ^~~~~~~~~~
../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable]
 static const char *constraints[eshNR+1]    = {
                    ^~~~~~~~~~~
In file included from ../../../src/kernel/readir.h:43,
                 from ../../../src/kernel/readpull.c:54:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/readpull.c:46:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/readpull.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/readpull.c:45:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o resall.lo ../../../src/kernel/resall.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/resall.c  -fPIC -DPIC -o .libs/resall.o
In file included from ../../../src/kernel/hackblock.h:42,
                 from ../../../src/kernel/resall.h:41,
                 from ../../../src/kernel/resall.c:49:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/resall.h:41,
                 from ../../../src/kernel/resall.c:49:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o sorting.lo ../../../src/kernel/sorting.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/sorting.c  -fPIC -DPIC -o .libs/sorting.o
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o pdb2top.lo ../../../src/kernel/pdb2top.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/pdb2top.c  -fPIC -DPIC -o .libs/pdb2top.o
../../../src/kernel/pdb2top.c: In function 'missing_atoms':
../../../src/kernel/pdb2top.c:75:16: warning: unused variable 'bRet' [-Wunused-variable]
   bool bFound, bRet;
                ^~~~
In file included from ../../../src/kernel/topio.h:41,
                 from ../../../src/kernel/pdb2top.c:57:
At top level:
../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable]
 static const char *couple_lam[ecouplamNR+1]    = {
                    ^~~~~~~~~~
../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable]
 static const char *constraints[eshNR+1]    = {
                    ^~~~~~~~~~~
In file included from ../../../src/kernel/readir.h:42,
                 from ../../../src/kernel/topio.h:41,
                 from ../../../src/kernel/pdb2top.c:57:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/pdb2top.h:43,
                 from ../../../src/kernel/pdb2top.c:50:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/kernel/pdb2top.h:41,
                 from ../../../src/kernel/pdb2top.c:50:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/pdb2top.c:44:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/kernel/pdb2top.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/pdb2top.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o grompp.o ../../../src/kernel/grompp.c
../../../src/kernel/grompp.c: In function 'new_status':
../../../src/kernel/grompp.c:300:3: warning: statement with no effect [-Wunused-value]
   mbs;
   ^~~
../../../src/kernel/grompp.c: In function 'read_posres':
../../../src/kernel/grompp.c:478:10: warning: unused variable 'bFirst' [-Wunused-variable]
   bool   bFirst = TRUE;
          ^~~~~~
../../../src/kernel/grompp.c: In function 'gen_posres':
../../../src/kernel/grompp.c:604:9: warning: unused variable 'j' [-Wunused-variable]
   int i,j;
         ^
../../../src/kernel/grompp.c:604:7: warning: unused variable 'i' [-Wunused-variable]
   int i,j;
       ^
../../../src/kernel/grompp.c: In function 'main':
../../../src/kernel/grompp.c:769:16: warning: unused variable 'natoms' [-Wunused-variable]
   int          natoms,nvsite,comb,mt;
                ^~~~~~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/pdb2top.h:43,
                 from ../../../src/kernel/add_par.h:41,
                 from ../../../src/kernel/grompp.c:74:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/kernel/grompp.c:60:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/grompp.c:60:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/grompp.c:54:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/kernel/grompp.c:50:
../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable]
 static const char *couple_lam[ecouplamNR+1]    = {
                    ^~~~~~~~~~
../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable]
 static const char *constraints[eshNR+1]    = {
                    ^~~~~~~~~~~
In file included from ../../../src/kernel/readir.h:43,
                 from ../../../src/kernel/grompp.c:50:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/readir.h:42,
                 from ../../../src/kernel/grompp.c:50:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
../../../src/kernel/grompp.c: In function 'main':
../../../src/kernel/grompp.c:380:19: warning: '%s' directive writing up to 4095 bytes into a region of size between 4045 and 4055 [-Wformat-overflow=]
       sprintf(buf,"%d non-matching atom name%s\n"
                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/kernel/grompp.c:856:14:
   new_status(fn,opt2fn_null("-pp",NFILE,fnm),opt2fn("-c",NFILE,fnm),
              ~~    
../../../src/kernel/grompp.c:381:25: note: format string is defined here
        "atom names from %s will be used\n"
                         ^~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/kernel/grompp.c:46:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 89 or more bytes (assuming 4194) into a destination of size 4096
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o specbond.lo ../../../src/kernel/specbond.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/specbond.c  -fPIC -DPIC -o .libs/specbond.o
In file included from ../../../src/kernel/specbond.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/specbond.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/pdb2top.h:41,
                 from ../../../src/kernel/specbond.h:40,
                 from ../../../src/kernel/specbond.c:47:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/specbond.c:43:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
../../../src/kernel/specbond.c: In function 'mk_specbonds':
../../../src/kernel/specbond.c:236:19: warning: '%d' directive writing between 1 and 11 bytes into a region of size 10 [-Wformat-overflow=]
    sprintf(buf,"%s%d",*pdba->resname[pdba->atom[sgp[i]].resnr],
                   ^~
../../../src/kernel/specbond.c:236:16: note: directive argument in the range [-2147483647, 2147483647]
    sprintf(buf,"%s%d",*pdba->resname[pdba->atom[sgp[i]].resnr],
                ^~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../include/typedefs.h:52,
                 from ../../../src/kernel/specbond.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 2 or more bytes (assuming 12) into a destination of size 10
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/kernel/specbond.c:245:19: warning: '%d' directive writing between 1 and 11 bytes into a region of size 10 [-Wformat-overflow=]
    sprintf(buf,"%s%d",*pdba->atomname[sgp[i]], sgp[i]+1);
                   ^~
../../../src/kernel/specbond.c:245:16: note: directive argument in the range [-2147483647, 2147483647]
    sprintf(buf,"%s%d",*pdba->atomname[sgp[i]], sgp[i]+1);
                ^~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../include/typedefs.h:52,
                 from ../../../src/kernel/specbond.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 2 or more bytes (assuming 12) into a destination of size 10
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/kernel/specbond.c:252:19: warning: '%d' directive writing between 1 and 11 bytes into a region of size 10 [-Wformat-overflow=]
    sprintf(buf,"%s%d",*pdba->resname[pdba->atom[sgp[i]].resnr],
                   ^~
../../../src/kernel/specbond.c:252:16: note: directive argument in the range [-2147483647, 2147483647]
    sprintf(buf,"%s%d",*pdba->resname[pdba->atom[sgp[i]].resnr],
                ^~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../include/typedefs.h:52,
                 from ../../../src/kernel/specbond.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 2 or more bytes (assuming 12) into a destination of size 10
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/kernel/specbond.c:255:19: warning: '%d' directive writing between 1 and 11 bytes into a region of size 10 [-Wformat-overflow=]
    sprintf(buf,"%s%d", *pdba->atomname[sgp[i]], sgp[i]+1);
                   ^~
../../../src/kernel/specbond.c:255:16: note: directive argument in the range [-2147483647, 2147483647]
    sprintf(buf,"%s%d", *pdba->atomname[sgp[i]], sgp[i]+1);
                ^~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../include/typedefs.h:52,
                 from ../../../src/kernel/specbond.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 2 or more bytes (assuming 12) into a destination of size 10
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o ter_db.lo ../../../src/kernel/ter_db.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/ter_db.c  -fPIC -DPIC -o .libs/ter_db.o
../../../src/kernel/ter_db.c: In function 'print_ter_db':
../../../src/kernel/ter_db.c:105:20: warning: unused variable 'nname' [-Wunused-variable]
   char buf[STRLEN],nname[STRLEN];
                    ^~~~~
../../../src/kernel/ter_db.c: In function 'filter_ter':
../../../src/kernel/ter_db.c:301:12: warning: unused variable 's2' [-Wunused-variable]
   char *s,*s2,*c;
            ^~
../../../src/kernel/ter_db.c:299:13: warning: unused variable 'len' [-Wunused-variable]
   int i,j,n,len,none_idx;
             ^~~
In file included from ../../../src/kernel/hackblock.h:42,
                 from ../../../src/kernel/resall.h:41,
                 from ../../../src/kernel/ter_db.c:45:
At top level:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/resall.h:41,
                 from ../../../src/kernel/ter_db.c:45:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o topdirs.lo ../../../src/kernel/topdirs.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/topdirs.c  -fPIC -DPIC -o .libs/topdirs.o
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o tomorse.lo ../../../src/kernel/tomorse.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/tomorse.c  -fPIC -DPIC -o .libs/tomorse.o
In file included from ../../../src/kernel/tomorse.c:46:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o topshake.lo ../../../src/kernel/topshake.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/topshake.c  -fPIC -DPIC -o .libs/topshake.o
../../../src/kernel/topshake.c: In function 'make_shake':
../../../src/kernel/topshake.c:98:19: warning: unused variable 'b' [-Wunused-variable]
   int          nb,b,i,j,ftype,ftype_a;
                   ^
../../../src/kernel/topshake.c:98:16: warning: unused variable 'nb' [-Wunused-variable]
   int          nb,b,i,j,ftype,ftype_a;
                ^~
In file included from ../../../src/kernel/topshake.c:46:
At top level:
../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable]
 static const char *couple_lam[ecouplamNR+1]    = {
                    ^~~~~~~~~~
../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable]
 static const char *constraints[eshNR+1]    = {
                    ^~~~~~~~~~~
In file included from ../../../src/kernel/readir.h:43,
                 from ../../../src/kernel/topshake.c:46:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/readir.h:42,
                 from ../../../src/kernel/topshake.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o topexcl.lo ../../../src/kernel/topexcl.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/topexcl.c  -fPIC -DPIC -o .libs/topexcl.o
In file included from ../../../include/gpp_nextnb.h:40,
                 from ../../../src/kernel/topexcl.c:45:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o toputil.lo ../../../src/kernel/toputil.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/toputil.c  -fPIC -DPIC -o .libs/toputil.o
../../../src/kernel/toputil.c:135:13: warning: 'print_nbt' defined but not used [-Wunused-function]
 static void print_nbt (FILE *out,char *title,t_atomtype at,
             ^~~~~~~~~
In file included from ../../../src/kernel/topdirs.h:40,
                 from ../../../src/kernel/toputil.c:45:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o glaasje.o ../../../src/kernel/glaasje.c
../../../src/kernel/glaasje.c: In function 'do_glas':
../../../src/kernel/glaasje.c:55:40: warning: unused variable 'r3' [-Wunused-variable]
   real wd,wdd,zi,fz,dd,d10,d4,d9,d3,r9,r3,sign,cc6,cc12;
                                        ^~
../../../src/kernel/glaasje.c:55:37: warning: unused variable 'r9' [-Wunused-variable]
   real wd,wdd,zi,fz,dd,d10,d4,d9,d3,r9,r3,sign,cc6,cc12;
                                     ^~
In file included from ../../../src/kernel/glaasje.c:44:
At top level:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o topio.lo ../../../src/kernel/topio.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/topio.c  -fPIC -DPIC -o .libs/topio.o
../../../src/kernel/topio.c: In function 'read_topol':
../../../src/kernel/topio.c:474:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
      else
      ^~~~
../../../src/kernel/topio.c:476:8: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else'
        break;
        ^~~~~
../../../src/kernel/topio.c:314:15: warning: unused variable 'block' [-Wunused-variable]
   t_topology *block=NULL;
               ^~~~~
In file included from ../../../src/kernel/topio.h:41,
                 from ../../../src/kernel/topio.c:66:
At top level:
../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable]
 static const char *couple_lam[ecouplamNR+1]    = {
                    ^~~~~~~~~~
../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable]
 static const char *constraints[eshNR+1]    = {
                    ^~~~~~~~~~~
In file included from ../../../src/kernel/readir.h:42,
                 from ../../../src/kernel/topio.h:41,
                 from ../../../src/kernel/topio.c:66:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/vsite_parm.h:41,
                 from ../../../src/kernel/topio.c:59:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o xlate.lo ../../../src/kernel/xlate.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/xlate.c  -fPIC -DPIC -o .libs/xlate.o
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gen_vsite.lo ../../../src/kernel/gen_vsite.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/gen_vsite.c  -fPIC -DPIC -o .libs/gen_vsite.o
../../../src/kernel/gen_vsite.c: In function 'read_vsite_database':
../../../src/kernel/gen_vsite.c:150:34: warning: unused variable 'prevdir' [-Wunused-variable]
   int i,j,n,k,nvsite,ntop,curdir,prevdir;
                                  ^~~~~~~
../../../src/kernel/gen_vsite.c:150:9: warning: unused variable 'j' [-Wunused-variable]
   int i,j,n,k,nvsite,ntop,curdir,prevdir;
         ^
../../../src/kernel/gen_vsite.c: In function 'add_vsites':
../../../src/kernel/gen_vsite.c:477:33: warning: unused variable 'bb' [-Wunused-variable]
   int i,j,ftype,other,moreheavy,bb;
                                 ^~
../../../src/kernel/gen_vsite.c: In function 'gen_vsites_6ring':
../../../src/kernel/gen_vsite.c:560:32: warning: variable 'yCE2' set but not used [-Wunused-but-set-variable]
    real xCG,yCG,xCE1,yCE1,xCE2,yCE2;
                                ^~~~
../../../src/kernel/gen_vsite.c:560:27: warning: variable 'xCE2' set but not used [-Wunused-but-set-variable]
    real xCG,yCG,xCE1,yCE1,xCE2,yCE2;
                           ^~~~
../../../src/kernel/gen_vsite.c:560:22: warning: variable 'yCE1' set but not used [-Wunused-but-set-variable]
    real xCG,yCG,xCE1,yCE1,xCE2,yCE2;
                      ^~~~
../../../src/kernel/gen_vsite.c:560:17: warning: variable 'xCE1' set but not used [-Wunused-but-set-variable]
    real xCG,yCG,xCE1,yCE1,xCE2,yCE2;
                 ^~~~
../../../src/kernel/gen_vsite.c:560:13: warning: variable 'yCG' set but not used [-Wunused-but-set-variable]
    real xCG,yCG,xCE1,yCE1,xCE2,yCE2;
             ^~~
../../../src/kernel/gen_vsite.c: In function 'calc_vsite3_param':
../../../src/kernel/gen_vsite.c:693:13: warning: variable 'b_ik' set but not used [-Wunused-but-set-variable]
   real b_ij,b_ik;
             ^~~~
../../../src/kernel/gen_vsite.c:693:8: warning: variable 'b_ij' set but not used [-Wunused-but-set-variable]
   real b_ij,b_ik;
        ^~~~
../../../src/kernel/gen_vsite.c: In function 'gen_vsites_trp':
../../../src/kernel/gen_vsite.c:741:12: warning: unused variable 'c' [-Wunused-variable]
   real a,b,c[MAXFORCEPARAM];
            ^
../../../src/kernel/gen_vsite.c:740:14: warning: unused variable 'mtot' [-Wunused-variable]
   real mwtot,mtot,mM[NMASS],dCBM1,dCBM2,dM1M2;
              ^~~~
../../../src/kernel/gen_vsite.c:740:8: warning: unused variable 'mwtot' [-Wunused-variable]
   real mwtot,mtot,mM[NMASS],dCBM1,dCBM2,dM1M2;
        ^~~~~
../../../src/kernel/gen_vsite.c:738:8: warning: unused variable 'xM' [-Wunused-variable]
   real xM[NMASS];
        ^~
../../../src/kernel/gen_vsite.c:735:8: warning: variable 'a_CB_CG_CD1' set but not used [-Wunused-but-set-variable]
   real a_CB_CG_CD1,a_CD2_CG_CD1,a_CE2_CZ2_HZ2,a_CZ2_CH2_HH2;
        ^~~~~~~~~~~
../../../src/kernel/gen_vsite.c:729:20: warning: unused variable 'dist' [-Wunused-variable]
   real lineA,lineB,dist;
                    ^~~~
../../../src/kernel/gen_vsite.c:729:14: warning: variable 'lineB' set but not used [-Wunused-but-set-variable]
   real lineA,lineB,dist;
              ^~~~~
../../../src/kernel/gen_vsite.c:728:32: warning: unused variable 'I' [-Wunused-variable]
   real xcom[NMASS],ycom[NMASS],I,alpha;
                                ^
../../../src/kernel/gen_vsite.c: In function 'gen_vsites_tyr':
../../../src/kernel/gen_vsite.c:968:8: warning: unused variable 'vmass' [-Wunused-variable]
   real vmass,vdist,mM;
        ^~~~~
../../../src/kernel/gen_vsite.c: In function 'do_vsites':
../../../src/kernel/gen_vsite.c:1332:29: warning: unused variable 'bb' [-Wunused-variable]
   int  Hatoms[4],heavies[4],bb;
                             ^~
In file included from ../../../src/kernel/gen_vsite.c:48:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/gen_vsite.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/gen_vsite.h:43,
                 from ../../../src/kernel/gen_vsite.c:44:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/kernel/gen_vsite.h:41,
                 from ../../../src/kernel/gen_vsite.c:44:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gctio.o ../../../src/kernel/gctio.c
In file included from ../../../src/kernel/gctio.c:49:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/xmdrun.h:50,
                 from ../../../src/kernel/gctio.c:41:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o toppush.lo ../../../src/kernel/toppush.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/toppush.c  -fPIC -DPIC -o .libs/toppush.o
../../../src/kernel/toppush.c: In function 'push_bt':
../../../src/kernel/toppush.c:573:37: warning: variable 'nrfpB' set but not used [-Wunused-but-set-variable]
   int      i,ft,ftype,nn,nrfp,nrfpA,nrfpB;
                                     ^~~~~
../../../src/kernel/toppush.c: In function 'push_dihedraltype':
../../../src/kernel/toppush.c:661:37: warning: variable 'nrfpB' set but not used [-Wunused-but-set-variable]
   int      i,ft,ftype,nn,nrfp,nrfpA,nrfpB,nral;
                                     ^~~~~
../../../src/kernel/toppush.c: In function 'push_nbt':
../../../src/kernel/toppush.c:778:17: warning: unused variable 'sig6' [-Wunused-variable]
   real    cr[4],sig6;
                 ^~~~
../../../src/kernel/toppush.c:776:23: warning: unused variable 'atnr' [-Wunused-variable]
   int     i,f,n,ftype,atnr,nrfp;
                       ^~~~
../../../src/kernel/toppush.c: In function 'push_atom_now':
../../../src/kernel/toppush.c:871:7: warning: unused variable 'j' [-Wunused-variable]
   int j,resnr_diff=-1;
       ^
../../../src/kernel/toppush.c: In function 'push_bond':
../../../src/kernel/toppush.c:1234:18: warning: unused variable 'paramB' [-Wunused-variable]
   t_param  param,paramB,*param_defA,*param_defB;
                  ^~~~~~
In file included from ../../../src/kernel/toppush.c:51:
At top level:
../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable]
 static const char *couple_lam[ecouplamNR+1]    = {
                    ^~~~~~~~~~
../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable]
 static const char *constraints[eshNR+1]    = {
                    ^~~~~~~~~~~
In file included from ../../../src/kernel/readir.h:42,
                 from ../../../src/kernel/toppush.c:51:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/toputil.h:40,
                 from ../../../src/kernel/toppush.c:48:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
../../../src/kernel/toppush.c: In function 'push_at':
../../../src/kernel/toppush.c:446:41: warning: '%s' directive writing up to 4095 bytes into a region of size 236 [-Wformat-overflow=]
     sprintf(errbuf,"Overriding atomtype %s",type);
                                         ^~  ~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/kernel/toppush.c:43:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 21 and 4116 bytes into a destination of size 256
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o readir.lo ../../../src/kernel/readir.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/readir.c  -fPIC -DPIC -o .libs/readir.o
../../../src/kernel/readir.c: In function 'do_index':
../../../src/kernel/readir.c:1427:38: warning: variable 'nbTS' set but not used [-Wunused-but-set-variable]
     nSAon,nSAoff,nSAsteps,nQMg,nbOPT,nbTS;
                                      ^~~~
../../../src/kernel/readir.c:1427:32: warning: variable 'nbOPT' set but not used [-Wunused-but-set-variable]
     nSAon,nSAoff,nSAsteps,nQMg,nbOPT,nbTS;
                                ^~~~~
../../../src/kernel/readir.c:1427:18: warning: variable 'nSAsteps' set but not used [-Wunused-but-set-variable]
     nSAon,nSAoff,nSAsteps,nQMg,nbOPT,nbTS;
                  ^~~~~~~~
../../../src/kernel/readir.c:1427:11: warning: variable 'nSAoff' set but not used [-Wunused-but-set-variable]
     nSAon,nSAoff,nSAsteps,nQMg,nbOPT,nbTS;
           ^~~~~~
../../../src/kernel/readir.c:1427:5: warning: variable 'nSAon' set but not used [-Wunused-but-set-variable]
     nSAon,nSAoff,nSAsteps,nQMg,nbOPT,nbTS;
     ^~~~~
../../../src/kernel/readir.c:1426:61: warning: variable 'nCASelec' set but not used [-Wunused-but-set-variable]
   int     nQMmethod,nQMbasis,nQMcharge,nQMmult,nbSH,nCASorb,nCASelec,
                                                             ^~~~~~~~
../../../src/kernel/readir.c:1426:53: warning: variable 'nCASorb' set but not used [-Wunused-but-set-variable]
   int     nQMmethod,nQMbasis,nQMcharge,nQMmult,nbSH,nCASorb,nCASelec,
                                                     ^~~~~~~
../../../src/kernel/readir.c:1426:48: warning: variable 'nbSH' set but not used [-Wunused-but-set-variable]
   int     nQMmethod,nQMbasis,nQMcharge,nQMmult,nbSH,nCASorb,nCASelec,
                                                ^~~~
../../../src/kernel/readir.c:1426:40: warning: variable 'nQMmult' set but not used [-Wunused-but-set-variable]
   int     nQMmethod,nQMbasis,nQMcharge,nQMmult,nbSH,nCASorb,nCASelec,
                                        ^~~~~~~
../../../src/kernel/readir.c:1426:30: warning: variable 'nQMcharge' set but not used [-Wunused-but-set-variable]
   int     nQMmethod,nQMbasis,nQMcharge,nQMmult,nbSH,nCASorb,nCASelec,
                              ^~~~~~~~~
../../../src/kernel/readir.c:1424:11: warning: unused variable 'SAtime' [-Wunused-variable]
   real    SAtime;
           ^~~~~~
../../../src/kernel/readir.c: In function 'triple_check':
../../../src/kernel/readir.c:1872:17: warning: unused variable 'npct' [-Wunused-variable]
   int  i,m,nmol,npct;
                 ^~~~
In file included from ../../../src/kernel/readir.c:58:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/readir.c:58:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/readir.h:43,
                 from ../../../src/kernel/readir.c:54:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/readir.c:53:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o repl_ex.o ../../../src/kernel/repl_ex.c
../../../src/kernel/repl_ex.c: In function 'init_replica_exchange':
../../../src/kernel/repl_ex.c:111:8: warning: unused variable 'temp' [-Wunused-variable]
   real temp,pres;
        ^~~~
../../../src/kernel/repl_ex.c: In function 'replica_exchange':
../../../src/kernel/repl_ex.c:560:20: warning: unused variable 'shift' [-Wunused-variable]
   int  exchange=-1,shift;
                    ^~~~~
At top level:
../../../src/kernel/repl_ex.c:544:13: warning: 'write_debug_x' defined but not used [-Wunused-function]
 static void write_debug_x(t_state *state)
             ^~~~~~~~~~~~~
In file included from ../../../src/kernel/repl_ex.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/repl_ex.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/repl_ex.c:46:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o xutils.o ../../../src/kernel/xutils.c
../../../src/kernel/xutils.c: In function 'calc_mu_aver':
../../../src/kernel/xutils.c:65:19: warning: variable 'end' set but not used [-Wunused-but-set-variable]
   int     i,start,end;
                   ^~~
../../../src/kernel/xutils.c: In function 'update_forcefield':
../../../src/kernel/xutils.c:335:10: warning: unused variable 'bDone' [-Wunused-variable]
   bool   bDone;
          ^~~~~
In file included from ../../../src/kernel/xutils.c:45:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/xutils.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/xmdrun.h:50,
                 from ../../../src/kernel/xutils.c:44:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o tpbcmp.lo ../../../src/kernel/tpbcmp.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/tpbcmp.c  -fPIC -DPIC -o .libs/tpbcmp.o
../../../src/kernel/tpbcmp.c: In function 'cmp_block':
../../../src/kernel/tpbcmp.c:242:11: warning: unused variable 'k' [-Wunused-variable]
   int i,j,k;
           ^
../../../src/kernel/tpbcmp.c:242:9: warning: unused variable 'j' [-Wunused-variable]
   int i,j,k;
         ^
../../../src/kernel/tpbcmp.c:242:7: warning: unused variable 'i' [-Wunused-variable]
   int i,j,k;
       ^
../../../src/kernel/tpbcmp.c: In function 'cmp_blocka':
../../../src/kernel/tpbcmp.c:252:11: warning: unused variable 'k' [-Wunused-variable]
   int i,j,k;
           ^
../../../src/kernel/tpbcmp.c:252:9: warning: unused variable 'j' [-Wunused-variable]
   int i,j,k;
         ^
../../../src/kernel/tpbcmp.c:252:7: warning: unused variable 'i' [-Wunused-variable]
   int i,j,k;
       ^
../../../src/kernel/tpbcmp.c: In function 'cmp_atom':
../../../src/kernel/tpbcmp.c:265:8: warning: unused variable 'buf' [-Wunused-variable]
   char buf[256];
        ^~~
../../../src/kernel/tpbcmp.c:264:8: warning: unused variable 'i' [-Wunused-variable]
   int  i;
        ^
../../../src/kernel/tpbcmp.c: In function 'cmp_top':
../../../src/kernel/tpbcmp.c:302:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/kernel/tpbcmp.c: In function 'comp_tpx':
../../../src/kernel/tpbcmp.c:567:15: warning: unused variable 'sh' [-Wunused-variable]
   t_tpxheader sh[2];
               ^~
../../../src/kernel/tpbcmp.c: In function 'comp_enx':
../../../src/kernel/tpbcmp.c:723:38: warning: unused variable 'buf' [-Wunused-variable]
   char       **enm1=NULL,**enm2=NULL,buf[256];
                                      ^~~
../../../src/kernel/tpbcmp.c:721:36: warning: unused variable 'block' [-Wunused-variable]
   int        in1,in2,nre,nre1,nre2,block;
                                    ^~~~~
At top level:
../../../src/kernel/tpbcmp.c:77:13: warning: 'cmp_uc' defined but not used [-Wunused-function]
 static void cmp_uc(FILE *fp,char *s,int index,unsigned char i1,unsigned char i2)
             ^~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/tpbcmp.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o ionize.o ../../../src/kernel/ionize.c
../../../src/kernel/ionize.c: In function 'ionize':
../../../src/kernel/ionize.c:735:2: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
  if (bL)
  ^~
../../../src/kernel/ionize.c:737:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
    if (ephot == 2) E_lost += 0.5; /* Real energy should be 2.5 KeV*/
    ^~
In file included from ../../../src/kernel/ionize.c:48:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/ionize.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o vsite_parm.lo ../../../src/kernel/vsite_parm.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/vsite_parm.c  -fPIC -DPIC -o .libs/vsite_parm.o
../../../src/kernel/vsite_parm.c: In function 'clean_vsite_bonds':
../../../src/kernel/vsite_parm.c:862:62: warning: unused variable 'vsitetype' [-Wunused-variable]
   int      ftype,i,j,parnr,k,l,m,n,nvsite,nOut,kept_i,vsnral,vsitetype;
                                                              ^~~~~~~~~
../../../src/kernel/vsite_parm.c:862:30: warning: unused variable 'l' [-Wunused-variable]
   int      ftype,i,j,parnr,k,l,m,n,nvsite,nOut,kept_i,vsnral,vsitetype;
                              ^
../../../src/kernel/vsite_parm.c:862:22: warning: unused variable 'parnr' [-Wunused-variable]
   int      ftype,i,j,parnr,k,l,m,n,nvsite,nOut,kept_i,vsnral,vsitetype;
                      ^~~~~
../../../src/kernel/vsite_parm.c: In function 'clean_vsite_angles':
../../../src/kernel/vsite_parm.c:1035:51: warning: unused variable 'vsitetype' [-Wunused-variable]
   int      i,j,parnr,k,l,m,n,nvsite,kept_i,vsnral,vsitetype;
                                                   ^~~~~~~~~
../../../src/kernel/vsite_parm.c:1035:24: warning: unused variable 'l' [-Wunused-variable]
   int      i,j,parnr,k,l,m,n,nvsite,kept_i,vsnral,vsitetype;
                        ^
../../../src/kernel/vsite_parm.c:1035:16: warning: unused variable 'parnr' [-Wunused-variable]
   int      i,j,parnr,k,l,m,n,nvsite,kept_i,vsnral,vsitetype;
                ^~~~~
../../../src/kernel/vsite_parm.c: In function 'clean_vsite_dihs':
../../../src/kernel/vsite_parm.c:1130:28: warning: unused variable 'l' [-Wunused-variable]
   int      ftype,i,parnr,k,l,m,n,nvsite,kept_i,vsnral;
                            ^
../../../src/kernel/vsite_parm.c:1130:20: warning: unused variable 'parnr' [-Wunused-variable]
   int      ftype,i,parnr,k,l,m,n,nvsite,kept_i,vsnral;
                    ^~~~~
../../../src/kernel/vsite_parm.c:1130:12: warning: unused variable 'ftype' [-Wunused-variable]
   int      ftype,i,parnr,k,l,m,n,nvsite,kept_i,vsnral;
            ^~~~~
In file included from ../../../src/kernel/vsite_parm.c:47:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/vsite_parm.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/resall.h:41,
                 from ../../../src/kernel/vsite_parm.c:45:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/kernel/vsite_parm.h:41,
                 from ../../../src/kernel/vsite_parm.c:43:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o mdrun.o ../../../src/kernel/mdrun.c
../../../src/kernel/mdrun.c: In function 'main':
../../../src/kernel/mdrun.c:387:20: warning: unused variable 'fptest' [-Wunused-variable]
   FILE     *fplog,*fptest;
                    ^~~~~~
../../../src/kernel/mdrun.c:386:12: warning: unused variable 'HaveCheckpoint' [-Wunused-variable]
   bool     HaveCheckpoint;
            ^~~~~~~~~~~~~~
../../../src/kernel/mdrun.c:285:15: warning: unused variable 'bPPPME' [-Wunused-variable]
   static bool bPPPME       = FALSE;
               ^~~~~~
../../../src/kernel/mdrun.c:284:15: warning: unused variable 'bCart' [-Wunused-variable]
   static bool bCart        = FALSE;
               ^~~~~
At top level:
../../../src/kernel/mdrun.c:284:15: warning: 'bCart' defined but not used [-Wunused-variable]
../../../src/kernel/mdrun.c:285:15: warning: 'bPPPME' defined but not used [-Wunused-variable]
   static bool bPPPME       = FALSE;
               ^~~~~~
In file included from ../../../include/pull.h:44,
                 from ../../../include/mdrun.h:56,
                 from ../../../src/kernel/mdrun.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../include/pull.h:44,
                 from ../../../include/mdrun.h:56,
                 from ../../../src/kernel/mdrun.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/mdrun.h:50,
                 from ../../../src/kernel/mdrun.c:49:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/mdrun.c:44:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/mdrun.c:42:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o luck.o ../../../src/kernel/luck.c
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/luck.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/luck.c:41:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o tpbconv.o ../../../src/kernel/tpbconv.c
../../../src/kernel/tpbconv.c: In function 'main':
../../../src/kernel/tpbconv.c:365:7: warning: unused variable 'nerror' [-Wunused-variable]
   int nerror = 0;
       ^~~~~~
../../../src/kernel/tpbconv.c:325:17: warning: unused variable 'gopts' [-Wunused-variable]
   t_gromppopts *gopts;
                 ^~~~~
../../../src/kernel/tpbconv.c:324:21: warning: unused variable 'irnew' [-Wunused-variable]
   t_inputrec   *ir,*irnew=NULL;
                     ^~~~~
../../../src/kernel/tpbconv.c:318:33: warning: unused variable 'nsteps_org' [-Wunused-variable]
   int          i,frame,run_step,nsteps_org;
                                 ^~~~~~~~~~
In file included from ../../../src/kernel/tpbconv.c:56:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/tpbconv.c:56:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/tpbconv.c:54:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/kernel/tpbconv.c:52:
../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable]
 static const char *couple_lam[ecouplamNR+1]    = {
                    ^~~~~~~~~~
../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable]
 static const char *constraints[eshNR+1]    = {
                    ^~~~~~~~~~~
In file included from ../../../src/kernel/readir.h:43,
                 from ../../../src/kernel/tpbconv.c:52:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/readir.h:42,
                 from ../../../src/kernel/tpbconv.c:52:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o do_gct.o ../../../src/kernel/do_gct.c
../../../src/kernel/do_gct.c: In function 'init_coupling':
../../../src/kernel/do_gct.c:63:19: warning: unused variable 'atj' [-Wunused-variable]
   int         ati,atj;
                   ^~~
../../../src/kernel/do_gct.c:63:15: warning: unused variable 'ati' [-Wunused-variable]
   int         ati,atj;
               ^~~
../../../src/kernel/do_gct.c:62:26: warning: unused variable 'j' [-Wunused-variable]
   int         i,nc,index,j;
                          ^
../../../src/kernel/do_gct.c:62:20: warning: unused variable 'index' [-Wunused-variable]
   int         i,nc,index,j;
                    ^~~~~
../../../src/kernel/do_gct.c:62:17: warning: unused variable 'nc' [-Wunused-variable]
   int         i,nc,index,j;
                 ^~
../../../src/kernel/do_gct.c:62:15: warning: unused variable 'i' [-Wunused-variable]
   int         i,nc,index,j;
               ^
../../../src/kernel/do_gct.c: In function 'do_coupling':
../../../src/kernel/do_gct.c:489:15: warning: unused variable 'bTest' [-Wunused-variable]
   bool        bTest,bPrint;
               ^~~~~
../../../src/kernel/do_gct.c:487:59: warning: unused variable 'xi12' [-Wunused-variable]
   real        Epol,Eintern,Virial,muabs,xiH=-1,xiS=-1,xi6,xi12;
                                                           ^~~~
../../../src/kernel/do_gct.c:487:55: warning: unused variable 'xi6' [-Wunused-variable]
   real        Epol,Eintern,Virial,muabs,xiH=-1,xiS=-1,xi6,xi12;
                                                       ^~~
../../../src/kernel/do_gct.c:486:32: warning: unused variable 'ffc' [-Wunused-variable]
   real        ff6,ff12,ffa,ffb,ffc,ffq,factor,dt,mu_ind;
                                ^~~
../../../src/kernel/do_gct.c:486:28: warning: unused variable 'ffb' [-Wunused-variable]
   real        ff6,ff12,ffa,ffb,ffc,ffq,factor,dt,mu_ind;
                            ^~~
../../../src/kernel/do_gct.c:486:24: warning: unused variable 'ffa' [-Wunused-variable]
   real        ff6,ff12,ffa,ffb,ffc,ffq,factor,dt,mu_ind;
                        ^~~
../../../src/kernel/do_gct.c:485:60: warning: unused variable 'rmsf' [-Wunused-variable]
   real        deviation[eoObsNR],prdev[eoObsNR],epot0,dist,rmsf;
                                                            ^~~~
At top level:
../../../src/kernel/do_gct.c:457:13: warning: 'dump_fm' defined but not used [-Wunused-function]
 static void dump_fm(FILE *fp,int n,real f[],char *s)
             ^~~~~~~
In file included from ../../../src/kernel/do_gct.c:50:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../include/pull.h:44,
                 from ../../../include/mdrun.h:56,
                 from ../../../src/kernel/do_gct.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../include/pull.h:44,
                 from ../../../include/mdrun.h:56,
                 from ../../../src/kernel/do_gct.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/xmdrun.h:50,
                 from ../../../src/kernel/do_gct.c:41:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o genalg.o ../../../src/kernel/genalg.c
../../../src/kernel/genalg.c: In function 'update_ga':
../../../src/kernel/genalg.c:197:12: warning: unused variable 'j' [-Wunused-variable]
   int   i, j, L, n;      /* counting variables                 */
            ^
In file included from ../../../src/kernel/genalg.c:75:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/genalg.c:75:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o protonate.o ../../../src/kernel/protonate.c
In file included from ../../../src/kernel/protonate.c:50:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/protonate.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/hackblock.h:42,
                 from ../../../src/kernel/genhydro.h:41,
                 from ../../../src/kernel/protonate.c:47:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/genhydro.h:40,
                 from ../../../src/kernel/protonate.c:47:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/protonate.c:45:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/protonate.c:43:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o x2top.o ../../../src/kernel/x2top.c
../../../src/kernel/x2top.c: In function 'set_cgnr':
../../../src/kernel/x2top.c:178:15: warning: unused variable 'mt' [-Wunused-variable]
   double qt=0,mt=0;
               ^~
../../../src/kernel/x2top.c: In function 'set_force_const':
../../../src/kernel/x2top.c:255:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/kernel/x2top.c: In function 'main':
../../../src/kernel/x2top.c:419:15: warning: unused variable 'scale' [-Wunused-variable]
   static real scale = 1.1, kb = 4e5,kt = 400,kp = 5;
               ^~~~~
../../../src/kernel/x2top.c:411:14: warning: unused variable 'cutoff' [-Wunused-variable]
   real       cutoff,qtot,mtot;
              ^~~~~~
../../../src/kernel/x2top.c:408:24: warning: unused variable 'ndih' [-Wunused-variable]
   int        i,j,k,l,m,ndih;
                        ^~~~
../../../src/kernel/x2top.c:408:22: warning: unused variable 'm' [-Wunused-variable]
   int        i,j,k,l,m,ndih;
                      ^
../../../src/kernel/x2top.c:408:20: warning: unused variable 'l' [-Wunused-variable]
   int        i,j,k,l,m,ndih;
                    ^
../../../src/kernel/x2top.c:408:18: warning: unused variable 'k' [-Wunused-variable]
   int        i,j,k,l,m,ndih;
                  ^
../../../src/kernel/x2top.c:408:16: warning: unused variable 'j' [-Wunused-variable]
   int        i,j,k,l,m,ndih;
                ^
../../../src/kernel/x2top.c:408:14: warning: unused variable 'i' [-Wunused-variable]
   int        i,j,k,l,m,ndih;
              ^
../../../src/kernel/x2top.c:407:14: warning: unused variable 'nres' [-Wunused-variable]
   int        nres;         /* number of molecules? */
              ^~~~
At top level:
../../../src/kernel/x2top.c:419:15: warning: 'scale' defined but not used [-Wunused-variable]
   static real scale = 1.1, kb = 4e5,kt = 400,kp = 5;
               ^~~~~
../../../src/kernel/x2top.c:117:12: warning: 'get_atype' defined but not used [-Wunused-function]
 static int get_atype(char *nm)
            ^~~~~~~~~
../../../src/kernel/x2top.c:80:13: warning: 'set_x_blen' defined but not used [-Wunused-function]
 static real set_x_blen(real scale)
             ^~~~~~~~~~
In file included from ../../../src/kernel/topio.h:41,
                 from ../../../src/kernel/gen_ad.h:42,
                 from ../../../src/kernel/x2top.c:60:
../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable]
 static const char *couple_lam[ecouplamNR+1]    = {
                    ^~~~~~~~~~
../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable]
 static const char *constraints[eshNR+1]    = {
                    ^~~~~~~~~~~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/pdb2top.h:43,
                 from ../../../src/kernel/x2top.c:59:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/kernel/toputil.h:40,
                 from ../../../src/kernel/toppush.h:41,
                 from ../../../src/kernel/x2top.c:58:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/x2top.c:52:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/x2top.c:51:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/x2top.c:42:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/kernel/x2top.c:40:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o libgmxpreprocess_mpi.la  add_par.lo compute_io.lo convparm.lo gen_ad.lo gen_vsite.lo genhydro.lo gmxcpp.lo gpp_atomtype.lo gpp_bond_atomtype.lo h_db.lo hackblock.lo hizzie.lo pdb2top.lo pgutil.lo readir.lo readpull.lo resall.lo sorting.lo specbond.lo ter_db.lo tomorse.lo topdirs.lo topexcl.lo topio.lo toppush.lo topshake.lo toputil.lo tpbcmp.lo vsite_parm.lo xlate.lo  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
ar cru .libs/libgmxpreprocess_mpi.a .libs/add_par.o .libs/compute_io.o .libs/convparm.o .libs/gen_ad.o .libs/gen_vsite.o .libs/genhydro.o .libs/gmxcpp.o .libs/gpp_atomtype.o .libs/gpp_bond_atomtype.o .libs/h_db.o .libs/hackblock.o .libs/hizzie.o .libs/pdb2top.o .libs/pgutil.o .libs/readir.o .libs/readpull.o .libs/resall.o .libs/sorting.o .libs/specbond.o .libs/ter_db.o .libs/tomorse.o .libs/topdirs.o .libs/topexcl.o .libs/topio.o .libs/toppush.o .libs/topshake.o .libs/toputil.o .libs/tpbcmp.o .libs/vsite_parm.o .libs/xlate.o
ranlib .libs/libgmxpreprocess_mpi.a
creating libgmxpreprocess_mpi.la
(cd .libs && rm -f libgmxpreprocess_mpi.la && ln -s ../libgmxpreprocess_mpi.la libgmxpreprocess_mpi.la)
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o grompp grompp.o libgmxpreprocess_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -o .libs/grompp grompp.o  ./.libs/libgmxpreprocess_mpi.a -lgslcblas -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath 
creating grompp
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o tpbconv tpbconv.o libgmxpreprocess_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -o .libs/tpbconv tpbconv.o  ./.libs/libgmxpreprocess_mpi.a -lgslcblas -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath 
creating tpbconv
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o protonate protonate.o libgmxpreprocess_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -o .libs/protonate protonate.o  ./.libs/libgmxpreprocess_mpi.a -lgslcblas -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath 
creating protonate
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nm2type.o ../../../src/kernel/nm2type.c
../../../src/kernel/nm2type.c: In function 'rd_nm2type':
../../../src/kernel/nm2type.c:72:20: warning: unused variable 'blen' [-Wunused-variable]
   double    qq,mm,*blen;
                    ^~~~
../../../src/kernel/nm2type.c: In function 'nm2type':
../../../src/kernel/nm2type.c:160:38: warning: unused variable 'quality' [-Wunused-variable]
   int *bbb,*n_mask,*m_mask,**match,**quality;
                                      ^~~~~~~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/pdb2top.h:43,
                 from ../../../src/kernel/nm2type.c:59:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/kernel/toputil.h:40,
                 from ../../../src/kernel/toppush.h:41,
                 from ../../../src/kernel/nm2type.c:58:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/nm2type.c:52:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/nm2type.c:51:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/nm2type.c:44:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/kernel/nm2type.c:42:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o luck luck.o libgmxpreprocess_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -o .libs/luck luck.o  ./.libs/libgmxpreprocess_mpi.a -lgslcblas -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath 
creating luck
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmxdump.o ../../../src/kernel/gmxdump.c
../../../src/kernel/gmxdump.c: In function 'list_tpx':
../../../src/kernel/gmxdump.c:146:16: warning: left-hand operand of comma expression has no effect [-Wunused-value]
       if (state,tpx.bF) {
                ^
../../../src/kernel/gmxdump.c:99:20: warning: unused variable 'fp' [-Wunused-variable]
   int         step,fp,indent,i,j,**gcount,atot;
                    ^~
../../../src/kernel/gmxdump.c: In function 'list_ene':
../../../src/kernel/gmxdump.c:314:17: warning: unused variable 'ndr' [-Wunused-variable]
   int        in,ndr;
                 ^~~
At top level:
../../../src/kernel/gmxdump.c:65:13: warning: 'dump_top' defined but not used [-Wunused-function]
 static void dump_top(FILE *fp,t_topology *top,char *tpr)
             ^~~~~~~~
In file included from ../../../src/kernel/gmxdump.c:47:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/gmxdump.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o gmxdump gmxdump.o libgmxpreprocess_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -o .libs/gmxdump gmxdump.o  ./.libs/libgmxpreprocess_mpi.a -lgslcblas -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath 
creating gmxdump
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o x2top x2top.o nm2type.o libgmxpreprocess_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -o .libs/x2top x2top.o nm2type.o  ./.libs/libgmxpreprocess_mpi.a -lgslcblas -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath 
creating x2top
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmxcheck.o ../../../src/kernel/gmxcheck.c
../../../src/kernel/gmxcheck.c: In function 'tpx2system':
../../../src/kernel/gmxcheck.c:90:7: warning: unused variable 'i' [-Wunused-variable]
   int i,nmol,nvsite=0;
       ^
../../../src/kernel/gmxcheck.c: In function 'tpx2methods':
../../../src/kernel/gmxcheck.c:140:15: warning: unused variable 'i' [-Wunused-variable]
   int         i,step;
               ^
../../../src/kernel/gmxcheck.c:136:15: warning: unused variable 'sh' [-Wunused-variable]
   t_tpxheader sh;
               ^~
../../../src/kernel/gmxcheck.c: In function 'chk_bonds':
../../../src/kernel/gmxcheck.c:202:26: warning: variable 'devtot' set but not used [-Wunused-but-set-variable]
   real b0,blen,deviation,devtot;
                          ^~~~~~
../../../src/kernel/gmxcheck.c:201:14: warning: unused variable 'i' [-Wunused-variable]
   int  ftype,i,k,ai,aj,type;
              ^
../../../src/kernel/gmxcheck.c: In function 'chk_trj':
../../../src/kernel/gmxcheck.c:252:35: warning: unused variable 'bOK' [-Wunused-variable]
   bool         bShowTimestep=TRUE,bOK,newline=FALSE;
                                   ^~~
../../../src/kernel/gmxcheck.c:251:40: warning: unused variable 'prec' [-Wunused-variable]
   real         rdum,t,tt,old_t1,old_t2,prec;
                                        ^~~~
../../../src/kernel/gmxcheck.c:251:23: warning: unused variable 'tt' [-Wunused-variable]
   real         rdum,t,tt,old_t1,old_t2,prec;
                       ^~
../../../src/kernel/gmxcheck.c:251:16: warning: unused variable 'rdum' [-Wunused-variable]
   real         rdum,t,tt,old_t1,old_t2,prec;
                ^~~~
../../../src/kernel/gmxcheck.c:250:16: warning: variable 'fpos' set but not used [-Wunused-but-set-variable]
   off_t        fpos;
                ^~~~
../../../src/kernel/gmxcheck.c: In function 'chk_ndx':
../../../src/kernel/gmxcheck.c:526:10: warning: unused variable 'j' [-Wunused-variable]
   int  i,j;
          ^
../../../src/kernel/gmxcheck.c: In function 'chk_enx':
../../../src/kernel/gmxcheck.c:550:25: warning: unused variable 'ndr' [-Wunused-variable]
   int        in,nre,fnr,ndr;
                         ^~~
In file included from ../../../src/kernel/gmxcheck.c:57:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/gmxcheck.c:57:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/gmxcheck.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/gmxcheck.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o pdb2gmx.o ../../../src/kernel/pdb2gmx.c
../../../src/kernel/pdb2gmx.c:149:20: warning: 'get_cystp' defined but not used [-Wunused-function]
 static const char *get_cystp(int resnr)
                    ^~~~~~~~~
In file included from ../../../src/kernel/toputil.h:40,
                 from ../../../src/kernel/pdb2gmx.c:55:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/pdb2gmx.c:54:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/pdb2gmx.c:51:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/pdb2gmx.c:50:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/pdb2gmx.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/pdb2gmx.c:46:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
../../../src/kernel/pdb2gmx.c: In function 'main':
../../../src/kernel/pdb2gmx.c:783:18: warning: '.rtp' directive writing 4 bytes into a region of size between 1 and 4096 [-Wformat-overflow=]
   sprintf(rtp,"%s.rtp",forcefield);
                  ^~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/kernel/pdb2gmx.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 5 and 4100 bytes into a destination of size 4096
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/kernel/pdb2gmx.c:1162:31: warning: '%s' directive writing up to 4095 bytes into a region of size 4089 [-Wformat-overflow=]
       sprintf(molname,"Protein%s",suffix);
                               ^~  ~~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/kernel/pdb2gmx.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 8 and 4103 bytes into a destination of size 4096
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/kernel/pdb2gmx.c:1176:22: warning: '_pr.itp' directive writing 7 bytes into a region of size between 1 and 4096 [-Wformat-overflow=]
  sprintf(posre_fn,"%s_pr.itp",buf_fn);
                      ^~~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/kernel/pdb2gmx.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 8 and 4103 bytes into a destination of size 4096
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o gmxcheck gmxcheck.o libgmxpreprocess_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -o .libs/gmxcheck gmxcheck.o  ./.libs/libgmxpreprocess_mpi.a -lgslcblas -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath 
creating gmxcheck
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o md.o ../../../src/kernel/md.c
../../../src/kernel/md.c: In function 'mdrunner':
../../../src/kernel/md.c:140:15: warning: unused variable 'gro' [-Wunused-variable]
   char       *gro;
               ^~~
../../../src/kernel/md.c:139:45: warning: unused variable 'nalloc' [-Wunused-variable]
   int        i,m,nChargePerturbed=-1,status,nalloc;
                                             ^~~~~~
../../../src/kernel/md.c:139:16: warning: unused variable 'm' [-Wunused-variable]
   int        i,m,nChargePerturbed=-1,status,nalloc;
                ^
../../../src/kernel/md.c:139:14: warning: unused variable 'i' [-Wunused-variable]
   int        i,m,nChargePerturbed=-1,status,nalloc;
              ^
../../../src/kernel/md.c:128:20: warning: unused variable 'tmpr2' [-Wunused-variable]
   real       tmpr1,tmpr2;
                    ^~~~~
../../../src/kernel/md.c:128:14: warning: unused variable 'tmpr1' [-Wunused-variable]
   real       tmpr1,tmpr2;
              ^~~~~
../../../src/kernel/md.c: In function 'do_md':
../../../src/kernel/md.c:533:16: warning: unused variable 'grpname' [-Wunused-variable]
   char        *grpname;
                ^~~~~~~
../../../src/kernel/md.c:525:15: warning: unused variable 'timestep' [-Wunused-variable]
   real        timestep=0;
               ^~~~~~~~
In file included from ../../../include/pppm.h:46,
                 from ../../../src/kernel/md.c:69:
At top level:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/md.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/md.c:45:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/md.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o pdb2gmx pdb2gmx.o libgmxpreprocess_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -o .libs/pdb2gmx pdb2gmx.o  ./.libs/libgmxpreprocess_mpi.a -lgslcblas -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath 
creating pdb2gmx
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o mdrun glaasje.o gctio.o ionize.o do_gct.o repl_ex.o xutils.o md.o mdrun.o genalg.o libgmxpreprocess_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -o .libs/mdrun glaasje.o gctio.o ionize.o do_gct.o repl_ex.o xutils.o md.o mdrun.o genalg.o  ./.libs/libgmxpreprocess_mpi.a -lgslcblas -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath 
creating mdrun
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
Making all in tools
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o polynomials.lo ../../../src/tools/polynomials.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/polynomials.c  -fPIC -DPIC -o .libs/polynomials.o
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/polynomials.c:44:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dlist.lo ../../../src/tools/dlist.c
mkdir .libs
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/dlist.c  -fPIC -DPIC -o .libs/dlist.o
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/dlist.c:44:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o expfit.lo ../../../src/tools/expfit.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/expfit.c  -fPIC -DPIC -o .libs/expfit.o
In file included from ../../../src/tools/expfit.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/expfit.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/expfit.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o eigio.lo ../../../src/tools/eigio.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/eigio.c  -fPIC -DPIC -o .libs/eigio.o
In file included from ../../../src/tools/eigio.c:41:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/eigio.c:41:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o lsq.lo ../../../src/tools/lsq.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/lsq.c  -fPIC -DPIC -o .libs/lsq.o
In file included from ../../../src/tools/lsq.c:42:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/lsq.c:42:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/lsq.c:41:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o cmat.lo ../../../src/tools/cmat.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/cmat.c  -fPIC -DPIC -o .libs/cmat.o
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o eigensolver.lo ../../../src/tools/eigensolver.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/eigensolver.c  -fPIC -DPIC -o .libs/eigensolver.o
../../../src/tools/eigensolver.c: In function 'eigensolver':
../../../src/tools/eigensolver.c:65:16: warning: unused variable 'iu' [-Wunused-variable]
     int     il,iu,m,iw0,info;
                ^~
../../../src/tools/eigensolver.c:65:13: warning: unused variable 'il' [-Wunused-variable]
     int     il,iu,m,iw0,info;
             ^~
../../../src/tools/eigensolver.c: In function 'sparse_eigensolver':
../../../src/tools/eigensolver.c:296:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
     for(i=0;i<11;i++)
     ^~~
../../../src/tools/eigensolver.c:299:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
  iparam[0] = 1;       /* Don't use explicit shifts */
  ^~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o pp2shift.lo ../../../src/tools/pp2shift.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/pp2shift.c  -fPIC -DPIC -o .libs/pp2shift.o
In file included from ../../../src/tools/pp2shift.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/pp2shift.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o fitahx.lo ../../../src/tools/fitahx.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/fitahx.c  -fPIC -DPIC -o .libs/fitahx.o
In file included from ../../../src/tools/fitahx.c:41:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/fitahx.c:41:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nsc.lo ../../../src/tools/nsc.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/nsc.c  -fPIC -DPIC -o .libs/nsc.o
../../../src/tools/nsc.c: In function 'make_unsp':
../../../src/tools/nsc.c:446:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
   if (xpunsp) free(xpunsp); if (ico_wk) free(ico_wk);
   ^~
../../../src/tools/nsc.c:446:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
   if (xpunsp) free(xpunsp); if (ico_wk) free(ico_wk);
                             ^~
../../../src/tools/nsc.c: In function 'nsc_dclm_pbc':
../../../src/tools/nsc.c:652:21: warning: unused variable 'm' [-Wunused-variable]
     int    ix,iy,iz,m;
                     ^
../../../src/tools/nsc.c:551:16: warning: unused variable 'jat_xx' [-Wunused-variable]
   int   iat_xx,jat_xx;
                ^~~~~~
In file included from ../../../src/tools/nsc.c:48:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/nsc.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o do_dssp.o ../../../src/tools/do_dssp.c
../../../src/tools/do_dssp.c: In function 'main':
../../../src/tools/do_dssp.c:347:16: warning: unused variable 'j' [-Wunused-variable]
   int        i,j,natoms,nframe=0;
                ^
In file included from ../../../src/tools/do_dssp.c:49:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/tools/do_dssp.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/do_dssp.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o levenmar.lo ../../../src/tools/levenmar.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/levenmar.c  -fPIC -DPIC -o .libs/levenmar.o
../../../src/tools/levenmar.c:224:13: warning: 'free_convert_matrix' defined but not used [-Wunused-function]
 static void free_convert_matrix(real **b, int nrl)
             ^~~~~~~~~~~~~~~~~~~
../../../src/tools/levenmar.c:208:15: warning: 'convert_matrix' defined but not used [-Wunused-function]
 static real **convert_matrix(real *a, int nrl, int nrh, int ncl, int nch)
               ^~~~~~~~~~~~~~
../../../src/tools/levenmar.c:201:13: warning: 'free_submatrix' defined but not used [-Wunused-function]
 static void free_submatrix(real **b, int nrl)
             ^~~~~~~~~~~~~~
../../../src/tools/levenmar.c:191:13: warning: 'free_imatrix' defined but not used [-Wunused-function]
 static void free_imatrix(int **m, int nrl, int nrh, int ncl)
             ^~~~~~~~~~~~
../../../src/tools/levenmar.c:183:13: warning: 'free_dmatrix' defined but not used [-Wunused-function]
 static void free_dmatrix(double **m, int nrl, int nrh, int ncl)
             ^~~~~~~~~~~~
../../../src/tools/levenmar.c:168:13: warning: 'free_dvector' defined but not used [-Wunused-function]
 static void free_dvector(int *v, int nl)
             ^~~~~~~~~~~~
../../../src/tools/levenmar.c:141:15: warning: 'submatrix' defined but not used [-Wunused-function]
 static real **submatrix(real **a, int oldrl, int oldrh, int oldcl,
               ^~~~~~~~~
../../../src/tools/levenmar.c:123:14: warning: 'imatrix1' defined but not used [-Wunused-function]
 static int **imatrix1(int nrl, int nrh, int ncl, int nch)
              ^~~~~~~~
../../../src/tools/levenmar.c:106:17: warning: 'dmatrix' defined but not used [-Wunused-function]
 static double **dmatrix(int nrl, int nrh, int ncl, int nch)
                 ^~~~~~~
../../../src/tools/levenmar.c:78:16: warning: 'dvector' defined but not used [-Wunused-function]
 static double *dvector(int nl, int nh)
                ^~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_angle.lo ../../../src/tools/gmx_angle.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_angle.c  -fPIC -DPIC -o .libs/gmx_angle.o
../../../src/tools/gmx_angle.c: In function 'gmx_angle':
../../../src/tools/gmx_angle.c:147:14: warning: unused variable 'buf' [-Wunused-variable]
   char       buf[80];
              ^~~
../../../src/tools/gmx_angle.c:143:38: warning: unused variable 'fraction' [-Wunused-variable]
   real       t,aa,aver,aver2,aversig,fraction;       /* fraction trans dihedrals */
                                      ^~~~~~~~
../../../src/tools/gmx_angle.c:143:16: warning: unused variable 'aa' [-Wunused-variable]
   real       t,aa,aver,aver2,aversig,fraction;       /* fraction trans dihedrals */
                ^~
../../../src/tools/gmx_angle.c:143:14: warning: unused variable 't' [-Wunused-variable]
   real       t,aa,aver,aver2,aversig,fraction;       /* fraction trans dihedrals */
              ^
../../../src/tools/gmx_angle.c:138:55: warning: unused variable 'angind' [-Wunused-variable]
   int        i,j,total,nangles,natoms,nat2,first,last,angind;
                                                       ^~~~~~
../../../src/tools/gmx_angle.c:138:39: warning: unused variable 'nat2' [-Wunused-variable]
   int        i,j,total,nangles,natoms,nat2,first,last,angind;
                                       ^~~~
../../../src/tools/gmx_angle.c:138:32: warning: unused variable 'natoms' [-Wunused-variable]
   int        i,j,total,nangles,natoms,nat2,first,last,angind;
                                ^~~~~~
../../../src/tools/gmx_angle.c:138:18: warning: unused variable 'total' [-Wunused-variable]
   int        i,j,total,nangles,natoms,nat2,first,last,angind;
                  ^~~~~
../../../src/tools/gmx_angle.c:135:21: warning: unused variable 'Jc' [-Wunused-variable]
   real       maxang,Jc,S2,norm_fac,maxstat;
                     ^~
../../../src/tools/gmx_angle.c:132:14: warning: unused variable 'status' [-Wunused-variable]
   int        status,isize;
              ^~~~~~
../../../src/tools/gmx_angle.c:131:14: warning: unused variable 'tmp' [-Wunused-variable]
   real       tmp,dt;
              ^~~
In file included from ../../../src/tools/gmx_angle.c:49:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_angle.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_angle.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_angle.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o autocorr.lo ../../../src/tools/autocorr.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/autocorr.c  -fPIC -DPIC -o .libs/autocorr.o
In file included from ../../../include/gmx_fft.h:41,
                 from ../../../src/tools/correl.h:40,
                 from ../../../src/tools/autocorr.c:53:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/tools/autocorr.c:51:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/autocorr.c:51:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/autocorr.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_bond.lo ../../../src/tools/gmx_bond.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_bond.c  -fPIC -DPIC -o .libs/gmx_bond.o
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_bond.c:51:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_bond.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_bond.c:45:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_bond.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_anaeig.lo ../../../src/tools/gmx_anaeig.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_anaeig.c  -fPIC -DPIC -o .libs/gmx_anaeig.o
../../../src/tools/gmx_anaeig.c: In function 'calc_entropy_schlitter':
../../../src/tools/gmx_anaeig.c:98:10: warning: unused variable 'buf' [-Wunused-variable]
   char   buf[256];
          ^~~
../../../src/tools/gmx_anaeig.c:97:16: warning: unused variable 'm' [-Wunused-variable]
   int    i,j,k,m;
                ^
../../../src/tools/gmx_anaeig.c:97:14: warning: unused variable 'k' [-Wunused-variable]
   int    i,j,k,m;
              ^
../../../src/tools/gmx_anaeig.c:97:12: warning: unused variable 'j' [-Wunused-variable]
   int    i,j,k,m;
            ^
../../../src/tools/gmx_anaeig.c:96:11: warning: unused variable 'indx' [-Wunused-variable]
   int    *indx;
           ^~~~
../../../src/tools/gmx_anaeig.c: In function 'compare':
../../../src/tools/gmx_anaeig.c:224:12: warning: unused variable 'nrow' [-Wunused-variable]
   int    n,nrow;
            ^~~~
../../../src/tools/gmx_anaeig.c: In function 'rmsf':
../../../src/tools/gmx_anaeig.c:692:9: warning: unused variable 'nrow' [-Wunused-variable]
   int   nrow,g,v,i;
         ^~~~
../../../src/tools/gmx_anaeig.c: In function 'gmx_anaeig':
../../../src/tools/gmx_anaeig.c:1015:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
     if (i!=natoms)
     ^~
../../../src/tools/gmx_anaeig.c:1017:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
       printf("\n");
       ^~~~~~
../../../src/tools/gmx_anaeig.c:835:21: warning: unused variable 'step' [-Wunused-variable]
   int        natoms,step;
                     ^~~~
../../../src/tools/gmx_anaeig.c:834:42: warning: unused variable 'lambda' [-Wunused-variable]
   real       xid,totmass,*sqrtm,*w_rls,t,lambda;
                                          ^~~~~~
../../../src/tools/gmx_anaeig.c:834:14: warning: unused variable 'xid' [-Wunused-variable]
   real       xid,totmass,*sqrtm,*w_rls,t,lambda;
              ^~~
../../../src/tools/gmx_anaeig.c:832:18: warning: unused variable 'xread' [-Wunused-variable]
   rvec       *x,*xread,*xav1,*xav2,**eigvec1=NULL,**eigvec2=NULL;
                  ^~~~~
../../../src/tools/gmx_anaeig.c:832:15: warning: unused variable 'x' [-Wunused-variable]
   rvec       *x,*xread,*xav1,*xav2,**eigvec1=NULL,**eigvec2=NULL;
               ^
../../../src/tools/gmx_anaeig.c:825:21: warning: unused variable 'trjout' [-Wunused-variable]
   int        status,trjout;
                     ^~~~~~
../../../src/tools/gmx_anaeig.c:825:14: warning: unused variable 'status' [-Wunused-variable]
   int        status,trjout;
              ^~~~~~
../../../src/tools/gmx_anaeig.c:824:15: warning: unused variable 'out' [-Wunused-variable]
   FILE       *out;
               ^~~
In file included from ../../../src/tools/gmx_anaeig.c:53:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
In file included from ../../../src/tools/gmx_anaeig.c:49:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_anaeig.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_anaeig.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_anaeig.c:41:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o anadih.lo ../../../src/tools/anadih.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/anadih.c  -fPIC -DPIC -o .libs/anadih.o
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/anadih.c:51:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/anadih.c:50:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/anadih.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o hxprops.lo ../../../src/tools/hxprops.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/hxprops.c  -fPIC -DPIC -o .libs/hxprops.o
../../../src/tools/hxprops.c: In function 'ellipticity':
../../../src/tools/hxprops.c:85:14: warning: unused variable 'Xi' [-Wunused-variable]
   const real Xi=1.0;
              ^~
In file included from ../../../src/tools/hxprops.c:46:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/hxprops.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_analyze.lo ../../../src/tools/gmx_analyze.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_analyze.c  -fPIC -DPIC -o .libs/gmx_analyze.o
../../../src/tools/gmx_analyze.c: In function 'luzar_correl':
../../../src/tools/gmx_analyze.c:514:8: warning: unused variable 'weight' [-Wunused-variable]
   real weight,d2;
        ^~~~~~
../../../src/tools/gmx_analyze.c:512:14: warning: unused variable 'tol' [-Wunused-variable]
   const real tol = 1e-8;
              ^~~
../../../src/tools/gmx_analyze.c: In function 'gmx_analyze':
../../../src/tools/gmx_analyze.c:744:63: warning: unused variable 'bLuzarError' [-Wunused-variable]
   static bool bIntegrate=FALSE,bRegression=FALSE,bLuzar=FALSE,bLuzarError=FALSE;
                                                               ^~~~~~~~~~~
At top level:
../../../src/tools/gmx_analyze.c:744:63: warning: 'bLuzarError' defined but not used [-Wunused-variable]
../../../src/tools/gmx_analyze.c:273:13: warning: 'anal_ee' defined but not used [-Wunused-function]
 static real anal_ee(real *parm,real T,real t)
             ^~~~~~~
In file included from ../../../src/tools/gmx_analyze.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_analyze.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_analyze.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_analyze.c:41:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_bundle.lo ../../../src/tools/gmx_bundle.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_bundle.c  -fPIC -DPIC -o .libs/gmx_bundle.o
../../../src/tools/gmx_bundle.c: In function 'dump_axes':
../../../src/tools/gmx_bundle.c:141:17: warning: unused variable 'end' [-Wunused-variable]
   int         i,end;
                 ^~~
../../../src/tools/gmx_bundle.c: In function 'gmx_bundle':
../../../src/tools/gmx_bundle.c:210:16: warning: unused variable 'j' [-Wunused-variable]
   int        i,j,gnx[MAX_ENDS];
                ^
../../../src/tools/gmx_bundle.c:208:14: warning: unused variable 'natoms' [-Wunused-variable]
   int        natoms;
              ^~~~~~
../../../src/tools/gmx_bundle.c:198:15: warning: unused variable 'out' [-Wunused-variable]
   FILE       *out,*flen,*fdist,*fz,*ftilt,*ftiltr,*ftiltl;
               ^~~
In file included from ../../../src/tools/gmx_bundle.c:48:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_bundle.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_bundle.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_bundle.c:42:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_confrms.lo ../../../src/tools/gmx_confrms.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_confrms.c  -fPIC -DPIC -o .libs/gmx_confrms.o
../../../src/tools/gmx_confrms.c: In function 'find_matching_names':
../../../src/tools/gmx_confrms.c:252:35: warning: unused variable 'atnm2' [-Wunused-variable]
   char *resnm1, *resnm2, *atnm1, *atnm2;
                                   ^~~~~
../../../src/tools/gmx_confrms.c:252:27: warning: unused variable 'atnm1' [-Wunused-variable]
   char *resnm1, *resnm2, *atnm1, *atnm2;
                           ^~~~~
../../../src/tools/gmx_confrms.c:252:18: warning: unused variable 'resnm2' [-Wunused-variable]
   char *resnm1, *resnm2, *atnm1, *atnm2;
                  ^~~~~~
../../../src/tools/gmx_confrms.c:252:9: warning: unused variable 'resnm1' [-Wunused-variable]
   char *resnm1, *resnm2, *atnm1, *atnm2;
         ^~~~~~
../../../src/tools/gmx_confrms.c:249:7: warning: unused variable 'r' [-Wunused-variable]
   int r,rnr1, rnr2, prnr1, prnr2;
       ^
../../../src/tools/gmx_confrms.c:247:7: warning: unused variable 'i' [-Wunused-variable]
   int i, i1, i2, ii1, ii2, m1, m2;
       ^
../../../src/tools/gmx_confrms.c: In function 'gmx_confrms':
../../../src/tools/gmx_confrms.c:407:17: warning: unused variable 'tmas2' [-Wunused-variable]
   real    tmas1,tmas2;
                 ^~~~~
../../../src/tools/gmx_confrms.c:407:11: warning: unused variable 'tmas1' [-Wunused-variable]
   real    tmas1,tmas2;
           ^~~~~
../../../src/tools/gmx_confrms.c:404:13: warning: unused variable 'j' [-Wunused-variable]
   int     i,j,m;
             ^
In file included from ../../../src/tools/gmx_confrms.c:56:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/tools/gmx_confrms.c:50:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_confrms.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_confrms.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_confrms.c:46:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_density.lo ../../../src/tools/gmx_density.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_density.c  -fPIC -DPIC -o .libs/gmx_density.o
../../../src/tools/gmx_density.c: In function 'calc_density':
../../../src/tools/gmx_density.c:261:9: warning: unused variable 'buf' [-Wunused-variable]
   char *buf;             /* for tmp. keeping atomname */
         ^~~
../../../src/tools/gmx_density.c:254:9: warning: unused variable 'j' [-Wunused-variable]
       i,j,n,               /* loop indices */
         ^
../../../src/tools/gmx_density.c:253:9: warning: unused variable 'slCount' [-Wunused-variable]
       **slCount,         /* nr. of atoms in one slice for a group */
         ^~~~~~~
In file included from ../../../src/tools/gmx_density.c:52:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_density.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_density.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/gmx_density.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_covar.lo ../../../src/tools/gmx_covar.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_covar.c  -fPIC -DPIC -o .libs/gmx_covar.o
../../../src/tools/gmx_covar.c: In function 'gmx_covar':
../../../src/tools/gmx_covar.c:120:30: warning: unused variable 'count' [-Wunused-variable]
   int        natoms,nat,ndim,count,nframes0,nframes,nlevels;
                              ^~~~~
../../../src/tools/gmx_covar.c:119:24: warning: unused variable 'step' [-Wunused-variable]
   int        ntopatoms,step;
                        ^~~~
../../../src/tools/gmx_covar.c:119:14: warning: unused variable 'ntopatoms' [-Wunused-variable]
   int        ntopatoms,step;
              ^~~~~~~~~
../../../src/tools/gmx_covar.c:109:21: warning: unused variable 'trjout' [-Wunused-variable]
   int        status,trjout;
                     ^~~~~~
In file included from ../../../src/tools/gmx_covar.c:50:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_covar.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_covar.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_covar.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_dih.lo ../../../src/tools/gmx_dih.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_dih.c  -fPIC -DPIC -o .libs/gmx_dih.o
../../../src/tools/gmx_dih.c:55:13: warning: 'dump_dih' defined but not used [-Wunused-function]
 static void dump_dih(int nframes,char *title,real time[],real dih[])
             ^~~~~~~~
In file included from ../../../src/tools/gmx_dih.c:51:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_dih.c:51:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_dih.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_dih.c:43:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
../../../src/tools/gmx_dih.c: In function 'gmx_dih':
../../../src/tools/gmx_dih.c:265:22: warning: '%d' directive writing between 1 and 10 bytes into a region of size 6 [-Wformat-overflow=]
     sprintf(buf,"dih-%d",i);
                      ^~
../../../src/tools/gmx_dih.c:265:17: note: directive argument in the range [0, 1073741823]
     sprintf(buf,"dih-%d",i);
                 ^~~~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/tools/gmx_dih.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 6 and 15 bytes into a destination of size 10
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_current.lo ../../../src/tools/gmx_current.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_current.c  -fPIC -DPIC -o .libs/gmx_current.o
../../../src/tools/gmx_current.c: In function 'calc_mjdsp':
../../../src/tools/gmx_current.c:266:7: warning: unused variable 'rfr' [-Wunused-variable]
  real rfr;
       ^~~
../../../src/tools/gmx_current.c:265:8: warning: unused variable 'rtmp' [-Wunused-variable]
  real  rtmp;
        ^~~~
../../../src/tools/gmx_current.c: In function 'dielectric':
../../../src/tools/gmx_current.c:338:8: warning: variable 'rest' set but not used [-Wunused-but-set-variable]
   real rest=0.0;
        ^~~~
../../../src/tools/gmx_current.c:326:8: warning: unused variable 'qtmp' [-Wunused-variable]
   real qtmp;
        ^~~~
../../../src/tools/gmx_current.c:308:13: warning: unused variable 'dm_d' [-Wunused-variable]
   real dm_s,dm_d;
             ^~~~
../../../src/tools/gmx_current.c:308:8: warning: unused variable 'dm_s' [-Wunused-variable]
   real dm_s,dm_d;
        ^~~~
../../../src/tools/gmx_current.c:298:8: warning: unused variable 'rfr' [-Wunused-variable]
   real rfr=0.0;
        ^~~
../../../src/tools/gmx_current.c:293:33: warning: variable 'itrust' set but not used [-Wunused-but-set-variable]
   int  valloc,nalloc,nfr,nvfr,m,itrust=0;
                                 ^~~~~~
../../../src/tools/gmx_current.c:293:31: warning: unused variable 'm' [-Wunused-variable]
   int  valloc,nalloc,nfr,nvfr,m,itrust=0;
                               ^
../../../src/tools/gmx_current.c:292:17: warning: unused variable 'f' [-Wunused-variable]
   int   i,j,k,l,f;
                 ^
../../../src/tools/gmx_current.c:292:15: warning: unused variable 'l' [-Wunused-variable]
   int   i,j,k,l,f;
               ^
../../../src/tools/gmx_current.c:292:13: warning: unused variable 'k' [-Wunused-variable]
   int   i,j,k,l,f;
             ^
../../../src/tools/gmx_current.c: In function 'gmx_current':
../../../src/tools/gmx_current.c:720:15: warning: unused variable 'tfile' [-Wunused-variable]
   FILE       *tfile=NULL;
               ^~~~~
../../../src/tools/gmx_current.c:719:15: warning: unused variable 'outi' [-Wunused-variable]
   FILE       *outi=NULL;
               ^~~~
../../../src/tools/gmx_current.c:716:14: warning: unused variable 'lambda' [-Wunused-variable]
   real       lambda;
              ^~~~~~
../../../src/tools/gmx_current.c:715:13: warning: unused variable 't' [-Wunused-variable]
   real      t;
             ^
../../../src/tools/gmx_current.c:714:14: warning: unused variable 'step' [-Wunused-variable]
   int        step;
              ^~~~
../../../src/tools/gmx_current.c:713:21: warning: unused variable 'l' [-Wunused-variable]
   int       i,j,k=0,l;
                     ^
../../../src/tools/gmx_current.c:713:17: warning: unused variable 'k' [-Wunused-variable]
   int       i,j,k=0,l;
                 ^
../../../src/tools/gmx_current.c:713:15: warning: unused variable 'j' [-Wunused-variable]
   int       i,j,k=0,l;
               ^
../../../src/tools/gmx_current.c:711:12: warning: unused variable 'natoms' [-Wunused-variable]
   int      natoms;
            ^~~~~~
../../../src/tools/gmx_current.c:707:10: warning: variable 'bNEU' set but not used [-Wunused-but-set-variable]
   bool   bNEU;
          ^~~~
../../../src/tools/gmx_current.c:706:13: warning: variable 'bTop' set but not used [-Wunused-but-set-variable]
   bool      bTop;
             ^~~~
In file included from ../../../src/tools/gmx_current.c:44:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_current.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_current.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_current.c:40:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_densmap.lo ../../../src/tools/gmx_densmap.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_densmap.c  -fPIC -DPIC -o .libs/gmx_densmap.o
In file included from ../../../src/tools/gmx_densmap.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_densmap.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_densmap.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_densmap.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_chi.lo ../../../src/tools/gmx_chi.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_chi.c  -fPIC -DPIC -o .libs/gmx_chi.o
../../../src/tools/gmx_chi.c: In function 'histogramming':
../../../src/tools/gmx_chi.c:418:23: warning: unused variable 'his_aa1' [-Wunused-variable]
   int     ***his_aa,**his_aa1,*histmp;
                       ^~~~~~~
../../../src/tools/gmx_chi.c: In function 'print_transitions':
../../../src/tools/gmx_chi.c:834:8: warning: variable 'nh' set but not used [-Wunused-but-set-variable]
   int  nh[edMax];
        ^~
../../../src/tools/gmx_chi.c: In function 'gmx_chi':
../../../src/tools/gmx_chi.c:1098:16: warning: unused variable 'j' [-Wunused-variable]
   int        i,j,**chi_lookup,*xity;
                ^
In file included from ../../../src/tools/gmx_chi.c:59:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/tools/gmx_chi.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/gmx_chi.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_chi.c:44:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_chi.c:43:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../src/tools/gmx_chi.c: In function 'histogramming.isra.1':
../../../src/tools/gmx_chi.c:657:30: warning: '.xvg' directive writing 4 bytes into a region of size between 0 and 255 [-Wformat-overflow=]
      sprintf(sshisfile,"%s-%s.xvg",hisfile,sss[k]);
                              ^~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../src/tools/gmx_chi.c:39:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 6 or more bytes (assuming 261) into a destination of size 256
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_dielectric.lo ../../../src/tools/gmx_dielectric.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_dielectric.c  -fPIC -DPIC -o .libs/gmx_dielectric.o
../../../src/tools/gmx_dielectric.c: In function 'calc_nbegin':
../../../src/tools/gmx_dielectric.c:60:11: warning: unused variable 'dtt' [-Wunused-variable]
   real dt,dtt;
           ^~~
../../../src/tools/gmx_dielectric.c:60:8: warning: unused variable 'dt' [-Wunused-variable]
   real dt,dtt;
        ^~
In file included from ../../../src/tools/gmx_dielectric.c:53:
At top level:
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/tools/gmx_dielectric.c:51:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/gmx_dielectric.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_dielectric.c:44:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_spatial.lo ../../../src/tools/gmx_spatial.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_spatial.c  -fPIC -DPIC -o .libs/gmx_spatial.o
../../../src/tools/gmx_spatial.c: In function 'gmx_spatial':
../../../src/tools/gmx_spatial.c:131:21: warning: unused variable 'shx' [-Wunused-variable]
   rvec       *xtop,*shx[26];
                     ^~~
../../../src/tools/gmx_spatial.c:103:15: warning: unused variable 'bSHIFT' [-Wunused-variable]
   static bool bSHIFT=FALSE;
               ^~~~~~
At top level:
../../../src/tools/gmx_spatial.c:103:15: warning: 'bSHIFT' defined but not used [-Wunused-variable]
In file included from ../../../src/tools/gmx_spatial.c:44:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_spatial.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_spatial.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_spatial.c:40:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
../../../src/tools/gmx_spatial.c:38:14: warning: 'SRCID_template_c' defined but not used [-Wunused-variable]
 static char *SRCID_template_c = "$Id$";
              ^~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_dist.lo ../../../src/tools/gmx_dist.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_dist.c  -fPIC -DPIC -o .libs/gmx_dist.o
../../../src/tools/gmx_dist.c: In function 'gmx_dist':
../../../src/tools/gmx_dist.c:101:21: warning: unused variable 'fplt' [-Wunused-variable]
   FILE    *fp=NULL,*fplt=NULL;
                     ^~~~
../../../src/tools/gmx_dist.c:93:11: warning: unused variable 'aid' [-Wunused-variable]
   atom_id aid;
           ^~~
../../../src/tools/gmx_dist.c:87:17: warning: unused variable 'v' [-Wunused-variable]
   rvec *x=NULL,*v=NULL,dx;
                 ^
In file included from ../../../src/tools/gmx_dist.c:48:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_dist.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_dist.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_dist.c:45:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_dyndom.lo ../../../src/tools/gmx_dyndom.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_dyndom.c  -fPIC -DPIC -o .libs/gmx_dyndom.o
../../../src/tools/gmx_dyndom.c: In function 'rot_conf':
../../../src/tools/gmx_dyndom.c:60:14: warning: unused variable 'j' [-Wunused-variable]
   int      i,j,ai;
              ^
../../../src/tools/gmx_dyndom.c:58:43: warning: unused variable 'temp43' [-Wunused-variable]
   mat4     temp1,temp2,temp3,temp4,temp21,temp43;
                                           ^~~~~~
../../../src/tools/gmx_dyndom.c:58:36: warning: unused variable 'temp21' [-Wunused-variable]
   mat4     temp1,temp2,temp3,temp4,temp21,temp43;
                                    ^~~~~~
../../../src/tools/gmx_dyndom.c:58:30: warning: unused variable 'temp4' [-Wunused-variable]
   mat4     temp1,temp2,temp3,temp4,temp21,temp43;
                              ^~~~~
../../../src/tools/gmx_dyndom.c:57:49: warning: unused variable 'Tx' [-Wunused-variable]
   mat4     Rx,Ry,Rz,Rinvy,Rinvz,Mtot,Tcm,Tinvcm,Tx;
                                                 ^~
../../../src/tools/gmx_dyndom.c:57:42: warning: unused variable 'Tinvcm' [-Wunused-variable]
   mat4     Rx,Ry,Rz,Rinvy,Rinvz,Mtot,Tcm,Tinvcm,Tx;
                                          ^~~~~~
../../../src/tools/gmx_dyndom.c:57:38: warning: unused variable 'Tcm' [-Wunused-variable]
   mat4     Rx,Ry,Rz,Rinvy,Rinvz,Mtot,Tcm,Tinvcm,Tx;
                                      ^~~
../../../src/tools/gmx_dyndom.c:55:18: warning: unused variable 'center' [-Wunused-variable]
   rvec     arrow,center,xcm;
                  ^~~~~~
In file included from ../../../src/tools/gmx_dyndom.c:47:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_dyndom.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_dyndom.c:43:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_dyndom.c:41:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_kinetics.lo ../../../src/tools/gmx_kinetics.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_kinetics.c  -fPIC -DPIC -o .libs/gmx_kinetics.o
../../../src/tools/gmx_kinetics.c: In function 'epnm':
../../../src/tools/gmx_kinetics.c:96:16: warning: unused variable 'ii' [-Wunused-variable]
   int    nn,ni,ii;
                ^~
../../../src/tools/gmx_kinetics.c:96:13: warning: unused variable 'ni' [-Wunused-variable]
   int    nn,ni,ii;
             ^~
../../../src/tools/gmx_kinetics.c:96:10: warning: unused variable 'nn' [-Wunused-variable]
   int    nn,ni,ii;
          ^~
../../../src/tools/gmx_kinetics.c:95:31: warning: unused variable 'to' [-Wunused-variable]
   static char buf[32],from[8],to[8];
                               ^~
../../../src/tools/gmx_kinetics.c:95:23: warning: unused variable 'from' [-Wunused-variable]
   static char buf[32],from[8],to[8];
                       ^~~~
../../../src/tools/gmx_kinetics.c:95:15: warning: unused variable 'buf' [-Wunused-variable]
   static char buf[32],from[8],to[8];
               ^~~
../../../src/tools/gmx_kinetics.c: In function 'dump_remd_parameters':
../../../src/tools/gmx_kinetics.c:559:8: warning: unused variable 'rhs' [-Wunused-variable]
   real rhs,tauf,taub,fff,DG;
        ^~~
At top level:
../../../src/tools/gmx_kinetics.c:95:15: warning: 'buf' defined but not used [-Wunused-variable]
   static char buf[32],from[8],to[8];
               ^~~
../../../src/tools/gmx_kinetics.c:95:23: warning: 'from' defined but not used [-Wunused-variable]
   static char buf[32],from[8],to[8];
                       ^~~~
../../../src/tools/gmx_kinetics.c:95:31: warning: 'to' defined but not used [-Wunused-variable]
   static char buf[32],from[8],to[8];
                               ^~
../../../src/tools/gmx_kinetics.c:85:14: warning: 'itoa' defined but not used [-Wunused-function]
 static char *itoa(int i)
              ^~~~
In file included from ../../../src/tools/gmx_kinetics.c:49:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_kinetics.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_kinetics.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_kinetics.c:42:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_enemat.lo ../../../src/tools/gmx_enemat.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_enemat.c  -fPIC -DPIC -o .libs/gmx_enemat.o
In file included from ../../../src/tools/gmx_enemat.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_enemat.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_enemat.c:45:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_enemat.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_cluster.lo ../../../src/tools/gmx_cluster.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_cluster.c  -fPIC -DPIC -o .libs/gmx_cluster.o
../../../src/tools/gmx_cluster.c: In function 'mark_clusters':
../../../src/tools/gmx_cluster.c:638:11: warning: unused variable 'v' [-Wunused-variable]
   int i,j,v;
           ^
../../../src/tools/gmx_cluster.c: In function 'gmx_cluster':
../../../src/tools/gmx_cluster.c:1341:7: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
       for(i=0; (i<nf); i++)
       ^~~
../../../src/tools/gmx_cluster.c:1343:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
           ffclose(fp);
           ^~~~~~~
In file included from ../../../src/tools/gmx_cluster.c:49:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_cluster.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_cluster.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_cluster.c:45:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_lie.lo ../../../src/tools/gmx_lie.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_lie.c  -fPIC -DPIC -o .libs/gmx_lie.o
In file included from ../../../src/tools/gmx_lie.c:52:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_lie.c:51:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_lie.c:51:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_lie.c:45:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_filter.lo ../../../src/tools/gmx_filter.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_filter.c  -fPIC -DPIC -o .libs/gmx_filter.o
In file included from ../../../src/tools/gmx_filter.c:53:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_filter.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_filter.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_filter.c:42:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_gyrate.lo ../../../src/tools/gmx_gyrate.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_gyrate.c  -fPIC -DPIC -o .libs/gmx_gyrate.o
../../../src/tools/gmx_gyrate.c: In function 'gmx_gyrate':
../../../src/tools/gmx_gyrate.c:190:14: warning: unused variable 'i' [-Wunused-variable]
   int        i,j,m,gnx,nam,mol;
              ^
In file included from ../../../src/tools/gmx_gyrate.c:50:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_gyrate.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_gyrate.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_gyrate.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_h2order.lo ../../../src/tools/gmx_h2order.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_h2order.c  -fPIC -DPIC -o .libs/gmx_h2order.o
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_h2order.c:54:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_h2order.c:52:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_h2order.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_h2order.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_disre.lo ../../../src/tools/gmx_disre.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_disre.c  -fPIC -DPIC -o .libs/gmx_disre.o
../../../src/tools/gmx_disre.c: In function 'check_viol':
../../../src/tools/gmx_disre.c:144:11: warning: variable 'ener' set but not used [-Wunused-but-set-variable]
   real    ener,rt,mviol,tviol,viol,lam,dvdl,drt;
           ^~~~
../../../src/tools/gmx_disre.c: In function 'dump_disre_matrix':
../../../src/tools/gmx_disre.c:449:12: warning: unused variable 'iii' [-Wunused-variable]
   int      iii,i,j,nra,nratoms,tp,ri,rj,index,nlabel,label;
            ^~~
In file included from ../../../src/tools/gmx_disre.c:57:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/tools/gmx_disre.c:54:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_disre.c:53:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_disre.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_disre.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_disre.c:44:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_helix.lo ../../../src/tools/gmx_helix.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_helix.c  -fPIC -DPIC -o .libs/gmx_helix.o
../../../src/tools/gmx_helix.c: In function 'gmx_helix':
../../../src/tools/gmx_helix.c:213:21: warning: unused variable 'nre' [-Wunused-variable]
   int        natoms,nre,nres,step;
                     ^~~
In file included from ../../../src/tools/gmx_helix.c:62:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/tools/gmx_helix.c:51:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/gmx_helix.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_helix.c:43:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_dipoles.lo ../../../src/tools/gmx_dipoles.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_dipoles.c  -fPIC -DPIC -o .libs/gmx_dipoles.o
../../../src/tools/gmx_dipoles.c: In function 'do_gkr':
../../../src/tools/gmx_dipoles.c:156:17: warning: unused variable 'r2' [-Wunused-variable]
   real   qtot,q,r2,cosa,rr,phi;
                 ^~
../../../src/tools/gmx_dipoles.c:155:30: warning: unused variable 'index' [-Wunused-variable]
   int    gi,gj,j0,j1,i,j,k,n,index,grp0,grp1;
                              ^~~~~
../../../src/tools/gmx_dipoles.c: In function 'print_gkrbin':
../../../src/tools/gmx_dipoles.c:291:14: warning: unused variable 'n' [-Wunused-variable]
   int    i,j,n,last;
              ^
../../../src/tools/gmx_dipoles.c:291:12: warning: unused variable 'j' [-Wunused-variable]
   int    i,j,n,last;
            ^
../../../src/tools/gmx_dipoles.c: In function 'mol_quad':
../../../src/tools/gmx_dipoles.c:418:17: warning: unused variable 'rcom_n' [-Wunused-variable]
   real   rcom_m,rcom_n;
                 ^~~~~~
../../../src/tools/gmx_dipoles.c:418:10: warning: unused variable 'rcom_m' [-Wunused-variable]
   real   rcom_m,rcom_n;
          ^~~~~~
../../../src/tools/gmx_dipoles.c: In function 'compute_avercos':
../../../src/tools/gmx_dipoles.c:580:19: warning: unused variable 'n5' [-Wunused-variable]
   double dc,dc1,d,n5,ddc1,ddc2,ddc3;
                   ^~
../../../src/tools/gmx_dipoles.c:580:13: warning: unused variable 'dc1' [-Wunused-variable]
   double dc,dc1,d,n5,ddc1,ddc2,ddc3;
             ^~~
../../../src/tools/gmx_dipoles.c: In function 'do_dip':
../../../src/tools/gmx_dipoles.c:872:8: warning: unused variable 'gi' [-Wunused-variable]
    int gi,ind0,ind1;
        ^~
../../../src/tools/gmx_dipoles.c:675:27: warning: unused variable 'Vol' [-Wunused-variable]
   t_lsq      Mx,My,Mz,Msq,Vol;
                           ^~~
../../../src/tools/gmx_dipoles.c:675:23: warning: unused variable 'Msq' [-Wunused-variable]
   t_lsq      Mx,My,Mz,Msq,Vol;
                       ^~~
../../../src/tools/gmx_dipoles.c:675:20: warning: unused variable 'Mz' [-Wunused-variable]
   t_lsq      Mx,My,Mz,Msq,Vol;
                    ^~
../../../src/tools/gmx_dipoles.c:675:17: warning: unused variable 'My' [-Wunused-variable]
   t_lsq      Mx,My,Mz,Msq,Vol;
                 ^~
../../../src/tools/gmx_dipoles.c:675:14: warning: unused variable 'Mx' [-Wunused-variable]
   t_lsq      Mx,My,Mz,Msq,Vol;
              ^~
../../../src/tools/gmx_dipoles.c:668:32: warning: unused variable 'lambda' [-Wunused-variable]
   real       rcut=0,t,t0,t1,dt,lambda,dd,rms_cos;
                                ^~~~~~
../../../src/tools/gmx_dipoles.c:667:25: warning: unused variable 'buf' [-Wunused-variable]
   char       **enm=NULL,buf[STRLEN];
                         ^~~
../../../src/tools/gmx_dipoles.c:665:44: warning: unused variable 'step' [-Wunused-variable]
   int        *dipole_bin,ndipbin,ibin,iVol,step,idim=-1;
                                            ^~~~
../../../src/tools/gmx_dipoles.c:664:32: warning: unused variable 'nmol' [-Wunused-variable]
   int        i,j,k,n,m,natom=0,nmol,status,gnx_tot,teller,tel3;
                                ^~~~
../../../src/tools/gmx_dipoles.c:664:18: warning: unused variable 'k' [-Wunused-variable]
   int        i,j,k,n,m,natom=0,nmol,status,gnx_tot,teller,tel3;
                  ^
../../../src/tools/gmx_dipoles.c:664:16: warning: unused variable 'j' [-Wunused-variable]
   int        i,j,k,n,m,natom=0,nmol,status,gnx_tot,teller,tel3;
                ^
../../../src/tools/gmx_dipoles.c: In function 'gmx_dipoles':
../../../src/tools/gmx_dipoles.c:1271:16: warning: unused variable 'bCorr' [-Wunused-variable]
   bool         bCorr,bQuad,bGkr,bMU,bSlab;
                ^~~~~
../../../src/tools/gmx_dipoles.c:1227:31: warning: unused variable 'bMolCorr' [-Wunused-variable]
   static bool bAverCorr=FALSE,bMolCorr=FALSE,bPairs=TRUE,bPhi=FALSE;
                               ^~~~~~~~
../../../src/tools/gmx_dipoles.c:1227:15: warning: variable 'bAverCorr' set but not used [-Wunused-but-set-variable]
   static bool bAverCorr=FALSE,bMolCorr=FALSE,bPairs=TRUE,bPhi=FALSE;
               ^~~~~~~~~
At top level:
../../../src/tools/gmx_dipoles.c:1227:31: warning: 'bMolCorr' defined but not used [-Wunused-variable]
   static bool bAverCorr=FALSE,bMolCorr=FALSE,bPairs=TRUE,bPhi=FALSE;
                               ^~~~~~~~
In file included from ../../../src/tools/gmx_dipoles.c:49:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_dipoles.c:46:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_dipoles.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_dipoles.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_morph.lo ../../../src/tools/gmx_morph.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_morph.c  -fPIC -DPIC -o .libs/gmx_morph.o
In file included from ../../../src/tools/gmx_morph.c:44:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_morph.c:40:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_nmens.lo ../../../src/tools/gmx_nmens.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_nmens.c  -fPIC -DPIC -o .libs/gmx_nmens.o
../../../src/tools/gmx_nmens.c: In function 'gmx_nmens':
../../../src/tools/gmx_nmens.c:105:14: warning: unused variable 'eigvalnr' [-Wunused-variable]
   int *      eigvalnr;
              ^~~~~~~~
../../../src/tools/gmx_nmens.c:104:19: warning: unused variable 'invfr' [-Wunused-variable]
   real       rfac,invfr,rhalf,jr;
                   ^~~~~
../../../src/tools/gmx_nmens.c:99:21: warning: unused variable 'neigval' [-Wunused-variable]
   int        natoms,neigval;
                     ^~~~~~~
../../../src/tools/gmx_nmens.c:98:22: warning: unused variable 'totmass' [-Wunused-variable]
   real       *eigval,totmass,*invsqrtm,t,disp;
                      ^~~~~~~
../../../src/tools/gmx_nmens.c:89:21: warning: unused variable 'trjout' [-Wunused-variable]
   int        status,trjout;
                     ^~~~~~
../../../src/tools/gmx_nmens.c:89:14: warning: unused variable 'status' [-Wunused-variable]
   int        status,trjout;
              ^~~~~~
In file included from ../../../src/tools/gmx_nmens.c:54:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/tools/gmx_nmens.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_nmens.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_nmens.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_nmens.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_mindist.lo ../../../src/tools/gmx_mindist.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_mindist.c  -fPIC -DPIC -o .libs/gmx_mindist.o
../../../src/tools/gmx_mindist.c: In function 'periodic_mindist_plot':
../../../src/tools/gmx_mindist.c:114:10: warning: unused variable 'r' [-Wunused-variable]
   real   r,rmin,rmax,rmint,tmint;
          ^
../../../src/tools/gmx_mindist.c: In function 'dist_plot':
../../../src/tools/gmx_mindist.c:245:16: warning: unused variable 'frout' [-Wunused-variable]
   t_trxframe   frout;
                ^~~~~
../../../src/tools/gmx_mindist.c: In function 'gmx_mindist':
../../../src/tools/gmx_mindist.c:473:15: warning: unused variable 'j' [-Wunused-variable]
   int       i,j,nres=0;
               ^
../../../src/tools/gmx_mindist.c:472:14: warning: unused variable 'atm' [-Wunused-variable]
   FILE      *atm;
              ^~~
../../../src/tools/gmx_mindist.c:467:14: warning: unused variable 't' [-Wunused-variable]
   real       t;
              ^
../../../src/tools/gmx_mindist.c:441:16: warning: unused variable 'bugs' [-Wunused-variable]
   static char *bugs[] = {
                ^~~~
At top level:
../../../src/tools/gmx_mindist.c:441:16: warning: 'bugs' defined but not used [-Wunused-variable]
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_mindist.c:53:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_mindist.c:51:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_mindist.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_mindist.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_nmeig.lo ../../../src/tools/gmx_nmeig.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_nmeig.c  -fPIC -DPIC -o .libs/gmx_nmeig.o
../../../src/tools/gmx_nmeig.c: In function 'nma_full_hessian':
../../../src/tools/gmx_nmeig.c:76:19: warning: unused variable 'rdum' [-Wunused-variable]
     real mass_fac,rdum;
                   ^~~~
../../../src/tools/gmx_nmeig.c: In function 'gmx_nmeig':
../../../src/tools/gmx_nmeig.c:229:15: warning: unused variable 'index' [-Wunused-variable]
   atom_id    *index;
               ^~~~~
../../../src/tools/gmx_nmeig.c:227:24: warning: unused variable 'gnx' [-Wunused-variable]
   int        i,j,k,l,d,gnx;
                        ^~~
../../../src/tools/gmx_nmeig.c:227:22: warning: unused variable 'd' [-Wunused-variable]
   int        i,j,k,l,d,gnx;
                      ^
../../../src/tools/gmx_nmeig.c:227:20: warning: unused variable 'l' [-Wunused-variable]
   int        i,j,k,l,d,gnx;
                    ^
../../../src/tools/gmx_nmeig.c:226:15: warning: unused variable 'grpname' [-Wunused-variable]
   char       *grpname,title[256];
               ^~~~~~~
../../../src/tools/gmx_nmeig.c:225:36: warning: unused variable 'count' [-Wunused-variable]
   int        natoms,ndim,nrow,ncol,count;
                                    ^~~~~
../../../src/tools/gmx_nmeig.c:224:19: warning: unused variable 'mass_fac' [-Wunused-variable]
   real       rdum,mass_fac;
                   ^~~~~~~~
../../../src/tools/gmx_nmeig.c:224:14: warning: unused variable 'rdum' [-Wunused-variable]
   real       rdum,mass_fac;
              ^~~~
../../../src/tools/gmx_nmeig.c:217:21: warning: unused variable 'trjout' [-Wunused-variable]
   int        status,trjout;
                     ^~~~~~
../../../src/tools/gmx_nmeig.c:217:14: warning: unused variable 'status' [-Wunused-variable]
   int        status,trjout;
              ^~~~~~
In file included from ../../../src/tools/gmx_nmeig.c:50:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_nmeig.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_nmeig.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_nmeig.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_energy.lo ../../../src/tools/gmx_energy.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_energy.c  -fPIC -DPIC -o .libs/gmx_energy.o
../../../src/tools/gmx_energy.c: In function 'select_by_name':
../../../src/tools/gmx_energy.c:139:8: warning: unused variable 'n' [-Wunused-variable]
   int  n,k,kk,j,i,nmatch,nind,nss;
        ^
../../../src/tools/gmx_energy.c: In function 'analyse_ener':
../../../src/tools/gmx_energy.c:529:16: warning: unused variable 'kkk' [-Wunused-variable]
   int  i,j,m,k,kkk;
                ^~~
../../../src/tools/gmx_energy.c:524:30: warning: unused variable 'diffav' [-Wunused-variable]
   real sfrac,oldfrac,diffsum,diffav,fstep,pr_aver,pr_stddev,fluct2;
                              ^~~~~~
../../../src/tools/gmx_energy.c:524:22: warning: unused variable 'diffsum' [-Wunused-variable]
   real sfrac,oldfrac,diffsum,diffav,fstep,pr_aver,pr_stddev,fluct2;
                      ^~~~~~~
../../../src/tools/gmx_energy.c:524:14: warning: unused variable 'oldfrac' [-Wunused-variable]
   real sfrac,oldfrac,diffsum,diffav,fstep,pr_aver,pr_stddev,fluct2;
              ^~~~~~~
../../../src/tools/gmx_energy.c:524:8: warning: unused variable 'sfrac' [-Wunused-variable]
   real sfrac,oldfrac,diffsum,diffav,fstep,pr_aver,pr_stddev,fluct2;
        ^~~~~
../../../src/tools/gmx_energy.c: In function 'fec':
../../../src/tools/gmx_energy.c:770:8: warning: unused variable 't' [-Wunused-variable]
   real t, aver, beta;
        ^
../../../src/tools/gmx_energy.c:766:22: warning: unused variable 'step' [-Wunused-variable]
   int  nre,timecheck,step,nenergy2,maxenergy;
                      ^~~~
../../../src/tools/gmx_energy.c:766:8: warning: unused variable 'nre' [-Wunused-variable]
   int  nre,timecheck,step,nenergy2,maxenergy;
        ^~~
../../../src/tools/gmx_energy.c: In function 'gmx_energy':
../../../src/tools/gmx_energy.c:979:16: warning: unused variable 'nms' [-Wunused-variable]
   char       **nms;
                ^~~
../../../src/tools/gmx_energy.c:977:27: warning: unused variable 'enm2' [-Wunused-variable]
   char       **enm=NULL,**enm2=NULL,**leg=NULL,**pairleg,**odtleg,**otenleg;
                           ^~~~
../../../src/tools/gmx_energy.c:973:42: warning: unused variable 'bEDR' [-Wunused-variable]
   bool       bFoundFirst,bFoundOld,bCont,bEDR,bVisco;
                                          ^~~~
../../../src/tools/gmx_energy.c:959:23: warning: unused variable 'ee' [-Wunused-variable]
   t_energy   *oldee,**ee;
                       ^~
../../../src/tools/gmx_energy.c:953:16: warning: unused variable 'drout' [-Wunused-variable]
   FILE       **drout;
                ^~~~~
At top level:
../../../src/tools/gmx_energy.c:118:12: warning: 'strcount' defined but not used [-Wunused-function]
 static int strcount(char *s1,char *s2)
            ^~~~~~~~
In file included from ../../../src/tools/gmx_energy.c:52:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_energy.c:50:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_energy.c:46:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_energy.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_principal.lo ../../../src/tools/gmx_principal.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_principal.c  -fPIC -DPIC -o .libs/gmx_principal.o
../../../src/tools/gmx_principal.c: In function 'gmx_principal':
../../../src/tools/gmx_principal.c:97:20: warning: unused variable 'a3' [-Wunused-variable]
   rvec       a1,a2,a3,moi;
                    ^~
../../../src/tools/gmx_principal.c:97:17: warning: unused variable 'a2' [-Wunused-variable]
   rvec       a1,a2,a3,moi;
                 ^~
../../../src/tools/gmx_principal.c:97:14: warning: unused variable 'a1' [-Wunused-variable]
   rvec       a1,a2,a3,moi;
              ^~
../../../src/tools/gmx_principal.c:95:28: warning: unused variable 'mol' [-Wunused-variable]
   int        i,j,m,gnx,nam,mol;
                            ^~~
../../../src/tools/gmx_principal.c:95:24: warning: unused variable 'nam' [-Wunused-variable]
   int        i,j,m,gnx,nam,mol;
                        ^~~
../../../src/tools/gmx_principal.c:95:18: warning: unused variable 'm' [-Wunused-variable]
   int        i,j,m,gnx,nam,mol;
                  ^
../../../src/tools/gmx_principal.c:95:16: warning: unused variable 'j' [-Wunused-variable]
   int        i,j,m,gnx,nam,mol;
                ^
../../../src/tools/gmx_principal.c:95:14: warning: unused variable 'i' [-Wunused-variable]
   int        i,j,m,gnx,nam,mol;
              ^
In file included from ../../../src/tools/gmx_principal.c:50:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_principal.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_principal.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_principal.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_msd.lo ../../../src/tools/gmx_msd.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_msd.c  -fPIC -DPIC -o .libs/gmx_msd.o
../../../src/tools/gmx_msd.c: In function 'printmol':
../../../src/tools/gmx_msd.c:455:13: warning: unused variable 'r' [-Wunused-variable]
   real  a,b,r,D,Dav,D2av,VarD,sqrtD,sqrtD_max,scale;
             ^
../../../src/tools/gmx_msd.c:452:14: warning: unused variable 'out_pdb' [-Wunused-variable]
   FILE  *out,out_pdb;
              ^~~~~~~
At top level:
../../../src/tools/gmx_msd.c:144:13: warning: 'done_corr' defined but not used [-Wunused-function]
 static void done_corr(t_corr *this)
             ^~~~~~~~~
In file included from ../../../src/tools/gmx_msd.c:57:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/tools/gmx_msd.c:51:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_msd.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_msd.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_msd.c:57:
../../../src/tools/gmx_msd.c: In function 'corr_loop':
../../../include/vec.h:362:8: warning: '*((void *)&com+8)' may be used uninitialized in this function [-Wmaybe-uninitialized]
   b[ZZ]=a[ZZ];
   ~~~~~^~~~~~
../../../src/tools/gmx_msd.c:525:29: note: '*((void *)&com+8)' was declared here
   rvec         *x[2],*xa[2],com;
                             ^~~
In file included from ../../../src/tools/gmx_msd.c:57:
../../../include/vec.h:361:8: warning: '*((void *)&com+4)' may be used uninitialized in this function [-Wmaybe-uninitialized]
   b[YY]=a[YY];
   ~~~~~^~~~~~
../../../src/tools/gmx_msd.c:525:29: note: '*((void *)&com+4)' was declared here
   rvec         *x[2],*xa[2],com;
                             ^~~
In file included from ../../../src/tools/gmx_msd.c:57:
../../../include/vec.h:360:8: warning: 'com' may be used uninitialized in this function [-Wmaybe-uninitialized]
   b[XX]=a[XX];
   ~~~~~^~~~~~
../../../src/tools/gmx_msd.c:525:29: note: 'com' was declared here
   rvec         *x[2],*xa[2],com;
                             ^~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_rama.lo ../../../src/tools/gmx_rama.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_rama.c  -fPIC -DPIC -o .libs/gmx_rama.o
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_rama.c:52:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_rama.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_rama.c:46:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_rama.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_polystat.lo ../../../src/tools/gmx_polystat.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_polystat.c  -fPIC -DPIC -o .libs/gmx_polystat.o
In file included from ../../../src/tools/gmx_polystat.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_polystat.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_polystat.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_polystat.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_order.lo ../../../src/tools/gmx_order.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_order.c  -fPIC -DPIC -o .libs/gmx_order.o
../../../src/tools/gmx_order.c: In function 'find_nearest_neighbours':
../../../src/tools/gmx_order.c:86:12: warning: unused variable 'nnb' [-Wunused-variable]
   int    **nnb;
            ^~~
../../../src/tools/gmx_order.c:85:14: warning: unused variable 'mm' [-Wunused-variable]
   int     m1,mm;
              ^~
../../../src/tools/gmx_order.c:85:11: warning: unused variable 'm1' [-Wunused-variable]
   int     m1,mm;
           ^~
../../../src/tools/gmx_order.c:84:12: warning: unused variable 'd' [-Wunused-variable]
   t_dist  *d;
            ^
../../../src/tools/gmx_order.c:83:12: warning: unused variable 'dmat' [-Wunused-variable]
   t_mat   *dmat;
            ^~~~
../../../src/tools/gmx_order.c:80:18: warning: unused variable 'dx2' [-Wunused-variable]
   rvec    dx,dx1,dx2,rj,rk,urk,urj;
                  ^~~
../../../src/tools/gmx_order.c:80:14: warning: unused variable 'dx1' [-Wunused-variable]
   rvec    dx,dx1,dx2,rj,rk,urk,urj;
              ^~~
../../../src/tools/gmx_order.c:79:14: warning: unused variable 'i2' [-Wunused-variable]
   int     i1,i2,i,ibin,j,k,l,n,*nn[4];
              ^~
../../../src/tools/gmx_order.c:79:11: warning: unused variable 'i1' [-Wunused-variable]
   int     i1,i2,i,ibin,j,k,l,n,*nn[4];
           ^~
../../../src/tools/gmx_order.c:77:11: warning: unused variable 'fnsgdist' [-Wunused-variable]
   char    fnsgdist[32];
           ^~~~~~~~
../../../src/tools/gmx_order.c:76:12: warning: unused variable 'fpoutdist' [-Wunused-variable]
   FILE    *fpoutdist;
            ^~~~~~~~~
../../../src/tools/gmx_order.c: In function 'calc_tetra_order_parm':
../../../src/tools/gmx_order.c:228:14: warning: unused variable 'i' [-Wunused-variable]
   int        i,*isize,ng,nframes;
              ^
../../../src/tools/gmx_order.c:219:39: warning: unused variable 'subtitle' [-Wunused-variable]
   char       title[STRLEN],fn[STRLEN],subtitle[STRLEN];
                                       ^~~~~~~~
../../../src/tools/gmx_order.c:219:28: warning: unused variable 'fn' [-Wunused-variable]
   char       title[STRLEN],fn[STRLEN],subtitle[STRLEN];
                            ^~
../../../src/tools/gmx_order.c: In function 'calc_order':
../../../src/tools/gmx_order.c:315:9: warning: unused variable 'dbangle' [-Wunused-variable]
    real dbangle = 0, /* angle between double bond and  axis            */
         ^~~~~~~
../../../src/tools/gmx_order.c:311:13: warning: unused variable 'l' [-Wunused-variable]
     i,j,m,k,l,teller = 0,
             ^
../../../src/tools/gmx_order.c: In function 'gmx_order':
../../../src/tools/gmx_order.c:556:13: warning: unused variable 'i' [-Wunused-variable]
             i,
             ^
In file included from ../../../src/tools/gmx_order.c:52:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_order.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_order.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/gmx_order.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_rotacf.lo ../../../src/tools/gmx_rotacf.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_rotacf.c  -fPIC -DPIC -o .libs/gmx_rotacf.o
In file included from ../../../src/tools/gmx_rotacf.c:54:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_rotacf.c:54:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_rotacf.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_rotacf.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_rmsdist.lo ../../../src/tools/gmx_rmsdist.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_rmsdist.c  -fPIC -DPIC -o .libs/gmx_rmsdist.o
../../../src/tools/gmx_rmsdist.c: In function 'analyze_noe_equivalent':
../../../src/tools/gmx_rmsdist.c:249:11: warning: unused variable 'fp' [-Wunused-variable]
   FILE   *fp;
           ^~
../../../src/tools/gmx_rmsdist.c: In function 'gmx_rmsdist':
../../../src/tools/gmx_rmsdist.c:534:36: warning: unused variable 'gj' [-Wunused-variable]
   int          natom,i,j,teller,gi,gj;
                                    ^~
../../../src/tools/gmx_rmsdist.c:534:33: warning: unused variable 'gi' [-Wunused-variable]
   int          natom,i,j,teller,gi,gj;
                                 ^~
../../../src/tools/gmx_rmsdist.c:534:24: warning: unused variable 'j' [-Wunused-variable]
   int          natom,i,j,teller,gi,gj;
                        ^
In file included from ../../../src/tools/gmx_rmsdist.c:52:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_rmsdist.c:52:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_rmsdist.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_rmsdist.c:47:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_potential.lo ../../../src/tools/gmx_potential.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_potential.c  -fPIC -DPIC -o .libs/gmx_potential.o
../../../src/tools/gmx_potential.c: In function 'calc_potential':
../../../src/tools/gmx_potential.c:108:9: warning: unused variable 'j' [-Wunused-variable]
       i,j,n,             /* loop indices */
         ^
../../../src/tools/gmx_potential.c:107:9: warning: unused variable 'slCount' [-Wunused-variable]
       **slCount,         /* nr. of atoms in one slice for a group */
         ^~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_potential.c:55:
At top level:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_potential.c:53:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_potential.c:50:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_potential.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_rmsf.lo ../../../src/tools/gmx_rmsf.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_rmsf.c  -fPIC -DPIC -o .libs/gmx_rmsf.o
../../../src/tools/gmx_rmsf.c: In function 'gmx_rmsf':
../../../src/tools/gmx_rmsf.c:211:16: warning: unused variable 'buf' [-Wunused-variable]
   char         buf[256],*label;
                ^~~
../../../src/tools/gmx_rmsf.c:210:33: warning: unused variable 'res0' [-Wunused-variable]
   int          status,npdbatoms,res0;
                                 ^~~~
../../../src/tools/gmx_rmsf.c:206:16: warning: unused variable 'bCont' [-Wunused-variable]
   bool         bCont;
                ^~~~~
../../../src/tools/gmx_rmsf.c:202:16: warning: unused variable 'ir' [-Wunused-variable]
   t_inputrec   ir;
                ^~
../../../src/tools/gmx_rmsf.c:201:16: warning: unused variable 'header' [-Wunused-variable]
   t_tpxheader  header;
                ^~~~~~
../../../src/tools/gmx_rmsf.c:199:33: warning: unused variable 'w_rms' [-Wunused-variable]
   real         t,lambda,*w_rls,*w_rms;
                                 ^~~~~
../../../src/tools/gmx_rmsf.c:199:18: warning: unused variable 'lambda' [-Wunused-variable]
   real         t,lambda,*w_rls,*w_rms;
                  ^~~~~~
../../../src/tools/gmx_rmsf.c:198:40: warning: unused variable 'g' [-Wunused-variable]
   int          step,nre,natom,natoms,i,g,m,teller=0;
                                        ^
../../../src/tools/gmx_rmsf.c:198:31: warning: unused variable 'natoms' [-Wunused-variable]
   int          step,nre,natom,natoms,i,g,m,teller=0;
                               ^~~~~~
../../../src/tools/gmx_rmsf.c:198:21: warning: unused variable 'nre' [-Wunused-variable]
   int          step,nre,natom,natoms,i,g,m,teller=0;
                     ^~~
../../../src/tools/gmx_rmsf.c:198:16: warning: unused variable 'step' [-Wunused-variable]
   int          step,nre,natom,natoms,i,g,m,teller=0;
                ^~~~
../../../src/tools/gmx_rmsf.c:189:39: warning: unused variable 'bdevX' [-Wunused-variable]
   static bool bRes=FALSE,bAniso=FALSE,bdevX=FALSE,bFit=TRUE;
                                       ^~~~~
At top level:
../../../src/tools/gmx_rmsf.c:189:39: warning: 'bdevX' defined but not used [-Wunused-variable]
In file included from ../../../src/tools/gmx_rmsf.c:50:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/tools/gmx_rmsf.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_rmsf.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_rmsf.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_rmsf.c:45:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_saltbr.lo ../../../src/tools/gmx_saltbr.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_saltbr.c  -fPIC -DPIC -o .libs/gmx_saltbr.o
../../../src/tools/gmx_saltbr.c: In function 'gmx_saltbr':
../../../src/tools/gmx_saltbr.c:163:14: warning: unused variable 'label' [-Wunused-variable]
   char       label[234];
              ^~~~~
../../../src/tools/gmx_saltbr.c:162:17: warning: unused variable 'dt' [-Wunused-variable]
   double     t0,dt;
                 ^~
../../../src/tools/gmx_saltbr.c:162:14: warning: unused variable 't0' [-Wunused-variable]
   double     t0,dt;
              ^~
../../../src/tools/gmx_saltbr.c:156:50: warning: unused variable 'n3' [-Wunused-variable]
   int        status,i,j,k,m,nnn,teller,ncg,n1,n2,n3,natoms;
                                                  ^~
../../../src/tools/gmx_saltbr.c:156:47: warning: unused variable 'n2' [-Wunused-variable]
   int        status,i,j,k,m,nnn,teller,ncg,n1,n2,n3,natoms;
                                               ^~
../../../src/tools/gmx_saltbr.c:156:44: warning: unused variable 'n1' [-Wunused-variable]
   int        status,i,j,k,m,nnn,teller,ncg,n1,n2,n3,natoms;
                                            ^~
In file included from ../../../src/tools/gmx_saltbr.c:48:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_saltbr.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_saltbr.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_saltbr.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_spol.lo ../../../src/tools/gmx_spol.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_spol.c  -fPIC -DPIC -o .libs/gmx_spol.o
../../../src/tools/gmx_spol.c: In function 'gmx_spol':
../../../src/tools/gmx_spol.c:165:28: warning: unused variable 'bPBC' [-Wunused-variable]
   static bool bCom = FALSE,bPBC = FALSE;
                            ^~~~
../../../src/tools/gmx_spol.c:131:13: warning: unused variable 'xtop' [-Wunused-variable]
   rvec     *xtop,*x,xref,try,dx,dip,dir;
             ^~~~
../../../src/tools/gmx_spol.c:127:12: warning: unused variable 'title' [-Wunused-variable]
   char     title[STRLEN];
            ^~~~~
At top level:
../../../src/tools/gmx_spol.c:165:28: warning: 'bPBC' defined but not used [-Wunused-variable]
   static bool bCom = FALSE,bPBC = FALSE;
                            ^~~~
In file included from ../../../src/tools/gmx_spol.c:45:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_spol.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_spol.c:43:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_spol.c:41:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_sas.lo ../../../src/tools/gmx_sas.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_sas.c  -fPIC -DPIC -o .libs/gmx_sas.o
../../../src/tools/gmx_sas.c: In function 'sas_plot':
../../../src/tools/gmx_sas.c:369:12: warning: unused variable 'mm' [-Wunused-variable]
       real mm;
            ^~
In file included from ../../../src/tools/gmx_sas.c:55:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_sas.c:52:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_sas.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_sas.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_sas.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
../../../src/tools/gmx_sas.c: In function 'connelly_plot':
../../../src/tools/gmx_sas.c:152:45: warning: '%d' directive writing between 1 and 11 bytes into a region of size 6 [-Wformat-overflow=]
       sprintf(atoms->pdbinfo[ii0].pdbresnr,"%d",r0+1);
                                             ^~
../../../src/tools/gmx_sas.c:152:44: note: directive argument in the range [-2147483647, 2147483647]
       sprintf(atoms->pdbinfo[ii0].pdbresnr,"%d",r0+1);
                                            ^~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/tools/gmx_sas.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 2 and 12 bytes into a destination of size 6
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_rdf.lo ../../../src/tools/gmx_rdf.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_rdf.c  -fPIC -DPIC -o .libs/gmx_rdf.o
../../../src/tools/gmx_rdf.c: In function 'do_rdf':
../../../src/tools/gmx_rdf.c:168:23: warning: unused variable 'index_cm' [-Wunused-variable]
   atom_id    **index,*index_cm=NULL;
                       ^~~~~~~~
../../../src/tools/gmx_rdf.c:167:21: warning: unused variable 'isize_cm' [-Wunused-variable]
   int        *isize,isize_cm=0,nrdf=0,max_i,isize0,isize_g;
                     ^~~~~~~~
../../../src/tools/gmx_rdf.c:164:40: warning: unused variable 'n' [-Wunused-variable]
   int        g,natoms,i,j,k,nbin,j0,j1,n,nframes;
                                        ^
../../../src/tools/gmx_rdf.c:164:37: warning: unused variable 'j1' [-Wunused-variable]
   int        g,natoms,i,j,k,nbin,j0,j1,n,nframes;
                                     ^~
../../../src/tools/gmx_rdf.c:164:34: warning: unused variable 'j0' [-Wunused-variable]
   int        g,natoms,i,j,k,nbin,j0,j1,n,nframes;
                                  ^~
../../../src/tools/gmx_rdf.c:162:28: warning: unused variable 'outf2' [-Wunused-variable]
   char       outf1[STRLEN],outf2[STRLEN];
                            ^~~~~
../../../src/tools/gmx_rdf.c:162:14: warning: unused variable 'outf1' [-Wunused-variable]
   char       outf1[STRLEN],outf2[STRLEN];
              ^~~~~
In file included from ../../../include/fftgrid.h:46,
                 from ../../../src/tools/gmx_rdf.c:57:
At top level:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_rdf.c:52:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_rdf.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_rdf.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_rdf.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_sgangle.lo ../../../src/tools/gmx_sgangle.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_sgangle.c  -fPIC -DPIC -o .libs/gmx_sgangle.o
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_sgangle.c:52:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_sgangle.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_sgangle.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_sgangle.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_sdf.lo ../../../src/tools/gmx_sdf.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_sdf.c  -fPIC -DPIC -o .libs/gmx_sdf.o
../../../src/tools/gmx_sdf.c: In function 'do_sdf':
../../../src/tools/gmx_sdf.c:101:25: warning: unused variable 'bRefDone' [-Wunused-variable]
   bool       bTop=FALSE,bRefDone=FALSE,bInGroup=FALSE;
                         ^~~~~~~~
../../../src/tools/gmx_sdf.c:97:17: warning: unused variable 'jx' [-Wunused-variable]
   atom_id    ix,jx;
                 ^~
../../../src/tools/gmx_sdf.c:97:14: warning: unused variable 'ix' [-Wunused-variable]
   atom_id    ix,jx;
              ^~
../../../src/tools/gmx_sdf.c:92:17: warning: unused variable 'xcog' [-Wunused-variable]
   rvec       *x,xcog,dx,*x_i1,xi,*x_refmol;
                 ^~~~
../../../src/tools/gmx_sdf.c:89:23: warning: variable 'hbox' set but not used [-Wunused-but-set-variable]
   real       t,boxmin,hbox,normfac;
                       ^~~~
../../../src/tools/gmx_sdf.c:88:15: warning: unused variable 'index_ref' [-Wunused-variable]
   atom_id    *index_ref=NULL;
               ^~~~~~~~~
../../../src/tools/gmx_sdf.c:87:15: warning: unused variable 'index_cg' [-Wunused-variable]
   atom_id    *index_cg=NULL;
               ^~~~~~~~
../../../src/tools/gmx_sdf.c:85:24: warning: unused variable 'refc' [-Wunused-variable]
   int        nrefmol=0,refc=0;
                        ^~~~
../../../src/tools/gmx_sdf.c:83:14: warning: unused variable 'isize_ref' [-Wunused-variable]
   int        isize_ref=3;
              ^~~~~~~~~
../../../src/tools/gmx_sdf.c:82:14: warning: unused variable 'isize_cg' [-Wunused-variable]
   int        isize_cg=0;
              ^~~~~~~~
../../../src/tools/gmx_sdf.c:75:41: warning: unused variable 'dest' [-Wunused-variable]
   int        ng,natoms,i,j,k,l,X,Y,Z,lc,dest;
                                         ^~~~
../../../src/tools/gmx_sdf.c:75:38: warning: unused variable 'lc' [-Wunused-variable]
   int        ng,natoms,i,j,k,l,X,Y,Z,lc,dest;
                                      ^~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_sdf.c:33:
At top level:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_sdf.c:31:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_sdf.c:28:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_sdf.c:28:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
../../../src/tools/gmx_sdf.c:20:14: warning: 'SRCID_template_c' defined but not used [-Wunused-variable]
 static char *SRCID_template_c = "$Id$";
              ^~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_rms.lo ../../../src/tools/gmx_rms.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_rms.c  -fPIC -DPIC -o .libs/gmx_rms.o
In file included from ../../../src/tools/gmx_rms.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_rms.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_rms.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_rms.c:46:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_sorient.lo ../../../src/tools/gmx_sorient.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_sorient.c  -fPIC -DPIC -o .libs/gmx_sorient.o
../../../src/tools/gmx_sorient.c: In function 'gmx_sorient':
../../../src/tools/gmx_sorient.c:114:72: warning: unused variable 'mtot' [-Wunused-variable]
   real    inp,outp,two_pi,nav,normfac,rmin2,rmax2,rcut,rcut2,r2,r,mass,mtot;
                                                                        ^~~~
../../../src/tools/gmx_sorient.c:114:67: warning: unused variable 'mass' [-Wunused-variable]
   real    inp,outp,two_pi,nav,normfac,rmin2,rmax2,rcut,rcut2,r2,r,mass,mtot;
                                                                   ^~~~
../../../src/tools/gmx_sorient.c:114:20: warning: variable 'two_pi' set but not used [-Wunused-but-set-variable]
   real    inp,outp,two_pi,nav,normfac,rmin2,rmax2,rcut,rcut2,r2,r,mass,mtot;
                    ^~~~~~
../../../src/tools/gmx_sorient.c:108:13: warning: unused variable 'j' [-Wunused-variable]
   int     i,j,p,sa0,sa1,sa2,n,ntot,nf,m,*hist1,*hist2,*histn,nbin1,nbin2,nrbin;
             ^
In file included from ../../../src/tools/gmx_sorient.c:45:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_sorient.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_sorient.c:43:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_sorient.c:41:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_velacc.lo ../../../src/tools/gmx_velacc.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_velacc.c  -fPIC -DPIC -o .libs/gmx_velacc.o
In file included from ../../../src/tools/gmx_velacc.c:57:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/tools/gmx_velacc.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/gmx_velacc.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_velacc.c:43:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_clustsize.lo ../../../src/tools/gmx_clustsize.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_clustsize.c  -fPIC -DPIC -o .libs/gmx_clustsize.o
../../../src/tools/gmx_clustsize.c: In function 'clust_size':
../../../src/tools/gmx_clustsize.c:94:50: warning: unused variable 'n_y' [-Wunused-variable]
   int     i,j,k,ai,aj,ak,ci,cj,nframe,nclust,n_x,n_y,max_size=0;
                                                  ^~~
../../../src/tools/gmx_clustsize.c:94:23: warning: unused variable 'ak' [-Wunused-variable]
   int     i,j,k,ai,aj,ak,ci,cj,nframe,nclust,n_x,n_y,max_size=0;
                       ^~
../../../src/tools/gmx_clustsize.c:89:40: warning: unused variable 'nsame' [-Wunused-variable]
   int     version,generation,sss,ii,jj,nsame;
                                        ^~~~~
../../../src/tools/gmx_clustsize.c: In function 'gmx_clustsize':
../../../src/tools/gmx_clustsize.c:396:18: warning: unused variable 'bRDF' [-Wunused-variable]
   bool       bSQ,bRDF;
                  ^~~~
../../../src/tools/gmx_clustsize.c:396:14: warning: unused variable 'bSQ' [-Wunused-variable]
   bool       bSQ,bRDF;
              ^~~
In file included from ../../../include/pme.h:46,
                 from ../../../src/tools/gmx_clustsize.c:62:
At top level:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/tools/gmx_clustsize.c:52:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_clustsize.c:50:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_clustsize.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_clustsize.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_tcaf.lo ../../../src/tools/gmx_tcaf.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_tcaf.c  -fPIC -DPIC -o .libs/gmx_tcaf.o
../../../src/tools/gmx_tcaf.c: In function 'gmx_tcaf':
../../../src/tools/gmx_tcaf.c:274:16: warning: unused variable 'c1' [-Wunused-variable]
   real       **c1,**tc;
                ^~
../../../src/tools/gmx_tcaf.c:265:14: warning: unused variable 'bTPS' [-Wunused-variable]
   bool       bTPS,bTop; /* ,bCubic; */
              ^~~~
In file included from ../../../src/tools/gmx_tcaf.c:57:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/tools/gmx_tcaf.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/gmx_tcaf.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_tcaf.c:43:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_helixorient.lo ../../../src/tools/gmx_helixorient.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_helixorient.c  -fPIC -DPIC -o .libs/gmx_helixorient.o
../../../src/tools/gmx_helixorient.c: In function 'gmx_helixorient':
../../../src/tools/gmx_helixorient.c:125:14: warning: unused variable 'rotangle' [-Wunused-variable]
     real tmp,rotangle;
              ^~~~~~~~
../../../src/tools/gmx_helixorient.c:107:10: warning: unused variable 'axes' [-Wunused-variable]
     rvec axes[3];
          ^~~~
../../../src/tools/gmx_helixorient.c:106:10: warning: unused variable 'axes_t0' [-Wunused-variable]
     rvec axes_t0[3];
          ^~~~~~~
../../../src/tools/gmx_helixorient.c:93:27: warning: unused variable 'vproj' [-Wunused-variable]
     rvec v1,v2,p1,p2,vtmp,vproj;
                           ^~~~~
../../../src/tools/gmx_helixorient.c:93:22: warning: unused variable 'vtmp' [-Wunused-variable]
     rvec v1,v2,p1,p2,vtmp,vproj;
                      ^~~~
../../../src/tools/gmx_helixorient.c:93:19: warning: unused variable 'p2' [-Wunused-variable]
     rvec v1,v2,p1,p2,vtmp,vproj;
                   ^~
../../../src/tools/gmx_helixorient.c:93:16: warning: unused variable 'p1' [-Wunused-variable]
     rvec v1,v2,p1,p2,vtmp,vproj;
                ^~
../../../src/tools/gmx_helixorient.c:92:10: warning: unused variable 'averageaxis' [-Wunused-variable]
     rvec averageaxis;
          ^~~~~~~~~~~
../../../src/tools/gmx_helixorient.c:86:9: warning: unused variable 'd' [-Wunused-variable]
     int d,i,j,teller=0;
         ^
../../../src/tools/gmx_helixorient.c:80:18: warning: unused variable 'dx' [-Wunused-variable]
     rvec *x=NULL,dx;
                  ^~
In file included from ../../../src/tools/gmx_helixorient.c:48:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_helixorient.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_helixorient.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_helixorient.c:45:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_mdmat.lo ../../../src/tools/gmx_mdmat.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_mdmat.c  -fPIC -DPIC -o .libs/gmx_mdmat.o
../../../src/tools/gmx_mdmat.c: In function 'gmx_mdmat':
../../../src/tools/gmx_mdmat.c:193:14: warning: unused variable 'nr0' [-Wunused-variable]
   int        nr0;
              ^~~
../../../src/tools/gmx_mdmat.c:192:45: warning: unused variable 'it' [-Wunused-variable]
   int        i,j,status,nres,natoms,nframes,it,trxnat;
                                             ^~
../../../src/tools/gmx_mdmat.c:165:15: warning: unused variable 'bAtom' [-Wunused-variable]
   static bool bAtom=FALSE;
               ^~~~~
At top level:
../../../src/tools/gmx_mdmat.c:165:15: warning: 'bAtom' defined but not used [-Wunused-variable]
In file included from ../../../src/tools/gmx_mdmat.c:49:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_mdmat.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_mdmat.c:44:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_mdmat.c:44:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o correl.lo ../../../src/tools/correl.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/correl.c  -fPIC -DPIC -o .libs/correl.o
../../../src/tools/correl.c: In function 'complex_mult':
../../../src/tools/correl.c:189:10: warning: unused variable 'no2' [-Wunused-variable]
   int  i,no2,n_2,k;
          ^~~
In file included from ../../../include/gmx_fft.h:41,
                 from ../../../src/tools/correl.c:43:
At top level:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_traj.lo ../../../src/tools/gmx_traj.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_traj.c  -fPIC -DPIC -o .libs/gmx_traj.o
../../../src/tools/gmx_traj.c: In function 'write_pdb_bfac':
../../../src/tools/gmx_traj.c:337:11: warning: unused variable 'bOne' [-Wunused-variable]
   bool    bOne;
           ^~~~
../../../src/tools/gmx_traj.c: In function 'gmx_traj':
../../../src/tools/gmx_traj.c:525:18: warning: unused variable 'n' [-Wunused-variable]
   int        i,j,n;
                  ^
In file included from ../../../src/tools/gmx_traj.c:49:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_traj.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_traj.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_traj.c:42:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_hbond.lo ../../../src/tools/gmx_hbond.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_hbond.c  -fPIC -DPIC -o .libs/gmx_hbond.o
../../../src/tools/gmx_hbond.c: In function 'mk_hbmap':
../../../src/tools/gmx_hbond.c:182:10: warning: unused variable 'j' [-Wunused-variable]
   int  i,j;
          ^
../../../src/tools/gmx_hbond.c: In function 'add_frames':
../../../src/tools/gmx_hbond.c:194:14: warning: unused variable 'l' [-Wunused-variable]
   int  i,j,k,l;
              ^
../../../src/tools/gmx_hbond.c:194:12: warning: unused variable 'k' [-Wunused-variable]
   int  i,j,k,l;
            ^
../../../src/tools/gmx_hbond.c:194:10: warning: unused variable 'j' [-Wunused-variable]
   int  i,j,k,l;
          ^
../../../src/tools/gmx_hbond.c:194:8: warning: unused variable 'i' [-Wunused-variable]
   int  i,j,k,l;
        ^
../../../src/tools/gmx_hbond.c: In function 'search_donors':
../../../src/tools/gmx_hbond.c:543:14: warning: unused variable 'stop' [-Wunused-variable]
   bool       stop;
              ^~~~
../../../src/tools/gmx_hbond.c:539:22: warning: unused variable 'n' [-Wunused-variable]
   int        i,j,nra,n;
                      ^
../../../src/tools/gmx_hbond.c:539:18: warning: unused variable 'nra' [-Wunused-variable]
   int        i,j,nra,n;
                  ^~~
../../../src/tools/gmx_hbond.c: In function 'is_hbond':
../../../src/tools/gmx_hbond.c:900:19: warning: unused variable 'ihb' [-Wunused-variable]
   int  h,hh,id,ja,ihb;
                   ^~~
../../../src/tools/gmx_hbond.c: In function 'merge_hb':
../../../src/tools/gmx_hbond.c:1021:44: warning: unused variable 'ogrp' [-Wunused-variable]
   int  i,inrnew,indnew,j,ii,jj,m,id,ia,grp,ogrp,ntmp;
                                            ^~~~
../../../src/tools/gmx_hbond.c:1021:40: warning: unused variable 'grp' [-Wunused-variable]
   int  i,inrnew,indnew,j,ii,jj,m,id,ia,grp,ogrp,ntmp;
                                        ^~~
../../../src/tools/gmx_hbond.c:1021:32: warning: unused variable 'm' [-Wunused-variable]
   int  i,inrnew,indnew,j,ii,jj,m,id,ia,grp,ogrp,ntmp;
                                ^
../../../src/tools/gmx_hbond.c: In function 'do_nhb_dist':
../../../src/tools/gmx_hbond.c:1077:8: warning: unused variable 'nhb' [-Wunused-variable]
   h_id nhb;
        ^~~
../../../src/tools/gmx_hbond.c: In function 'smooth_tail':
../../../src/tools/gmx_hbond.c:1439:9: warning: unused variable 'fp' [-Wunused-variable]
   FILE *fp;
         ^~
../../../src/tools/gmx_hbond.c: In function 'analyse_corr':
../../../src/tools/gmx_hbond.c:1461:56: warning: unused variable 'dt' [-Wunused-variable]
   real   Q=0,chi22,chi2,dg,dgp,tau_hb,dtau,tau_rlx,e_1,dt,sigma_k,sigma_kp,ddg;
                                                        ^~
../../../src/tools/gmx_hbond.c:1461:28: warning: unused variable 'dgp' [-Wunused-variable]
   real   Q=0,chi22,chi2,dg,dgp,tau_hb,dtau,tau_rlx,e_1,dt,sigma_k,sigma_kp,ddg;
                            ^~~
../../../src/tools/gmx_hbond.c:1461:25: warning: unused variable 'dg' [-Wunused-variable]
   real   Q=0,chi22,chi2,dg,dgp,tau_hb,dtau,tau_rlx,e_1,dt,sigma_k,sigma_kp,ddg;
                         ^~
../../../src/tools/gmx_hbond.c:1461:14: warning: variable 'chi22' set but not used [-Wunused-but-set-variable]
   real   Q=0,chi22,chi2,dg,dgp,tau_hb,dtau,tau_rlx,e_1,dt,sigma_k,sigma_kp,ddg;
              ^~~~~
../../../src/tools/gmx_hbond.c: In function 'do_hbac':
../../../src/tools/gmx_hbond.c:1585:27: warning: variable 'ngh' set but not used [-Wunused-but-set-variable]
   int   nh,nhbonds,nhydro,ngh;
                           ^~~
../../../src/tools/gmx_hbond.c:1577:18: warning: unused variable 'nd' [-Wunused-variable]
   int  i,j,k,m,n,nd,ihb,idist,n2,nn;
                  ^~
../../../src/tools/gmx_hbond.c:1577:16: warning: unused variable 'n' [-Wunused-variable]
   int  i,j,k,m,n,nd,ihb,idist,n2,nn;
                ^
../../../src/tools/gmx_hbond.c: In function 'gmx_hbond':
../../../src/tools/gmx_hbond.c:2051:30: warning: unused variable 'bin' [-Wunused-variable]
   int        grp,nabin,nrbin,bin,resdist,ihb;
                              ^~~
../../../src/tools/gmx_hbond.c:2049:43: warning: unused variable 'was' [-Wunused-variable]
   bool    bSelected,bHBmap,bStop,bTwo,new,was,bBox,bTric;
                                           ^~~
../../../src/tools/gmx_hbond.c:2049:39: warning: unused variable 'new' [-Wunused-variable]
   bool    bSelected,bHBmap,bStop,bTwo,new,was,bBox,bTric;
                                       ^~~
../../../src/tools/gmx_hbond.c:2045:34: warning: unused variable 'ja' [-Wunused-variable]
   int     h,i,j,k,l,start,end,id,ja,ogrp,nsel;
                                  ^~
../../../src/tools/gmx_hbond.c:2045:31: warning: unused variable 'id' [-Wunused-variable]
   int     h,i,j,k,l,start,end,id,ja,ogrp,nsel;
                               ^~
../../../src/tools/gmx_hbond.c:2045:27: warning: unused variable 'end' [-Wunused-variable]
   int     h,i,j,k,l,start,end,id,ja,ogrp,nsel;
                           ^~~
../../../src/tools/gmx_hbond.c:2045:21: warning: unused variable 'start' [-Wunused-variable]
   int     h,i,j,k,l,start,end,id,ja,ogrp,nsel;
                     ^~~~~
../../../src/tools/gmx_hbond.c:2045:19: warning: unused variable 'l' [-Wunused-variable]
   int     h,i,j,k,l,start,end,id,ja,ogrp,nsel;
                   ^
At top level:
../../../src/tools/gmx_hbond.c:372:13: warning: 'in_list' defined but not used [-Wunused-function]
 static bool in_list(atom_id selection,int isize,atom_id *index)
             ^~~~~~~
In file included from ../../../include/gmx_fft.h:41,
                 from ../../../src/tools/correl.h:40,
                 from ../../../src/tools/gmx_hbond.c:59:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/tools/gmx_hbond.c:53:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_hbond.c:53:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_hbond.c:43:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_hbond.c:42:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_nmtraj.lo ../../../src/tools/gmx_nmtraj.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_nmtraj.c  -fPIC -DPIC -o .libs/gmx_nmtraj.o
../../../src/tools/gmx_nmtraj.c: In function 'gmx_nmtraj':
../../../src/tools/gmx_nmtraj.c:129:14: warning: variable 'dum' set but not used [-Wunused-but-set-variable]
   real       dum;
              ^~~
../../../src/tools/gmx_nmtraj.c:124:14: warning: unused variable 'found' [-Wunused-variable]
   bool       found;
              ^~~~~
../../../src/tools/gmx_nmtraj.c:123:25: warning: unused variable 'sum' [-Wunused-variable]
   real       omega,Ekin,sum,m,vel;
                         ^~~
../../../src/tools/gmx_nmtraj.c:121:15: warning: unused variable 'out_eigval' [-Wunused-variable]
   real       *out_eigval;
               ^~~~~~~~~~
../../../src/tools/gmx_nmtraj.c:115:14: warning: unused variable 'neigval' [-Wunused-variable]
   int        neigval;
              ^~~~~~~
../../../src/tools/gmx_nmtraj.c:113:14: warning: unused variable 'grpname' [-Wunused-variable]
   char *     grpname;
              ^~~~~~~
../../../src/tools/gmx_nmtraj.c:111:14: warning: unused variable 'indexfile' [-Wunused-variable]
   char *     indexfile;
              ^~~~~~~~~
../../../src/tools/gmx_nmtraj.c:109:30: warning: unused variable 'v' [-Wunused-variable]
   int        i,j,k,kmode,d,s,v;
                              ^
../../../src/tools/gmx_nmtraj.c:109:28: warning: unused variable 's' [-Wunused-variable]
   int        i,j,k,kmode,d,s,v;
                            ^
../../../src/tools/gmx_nmtraj.c:105:15: warning: unused variable 'eigvalnr' [-Wunused-variable]
   int        *eigvalnr;
               ^~~~~~~~
In file included from ../../../src/tools/gmx_nmtraj.c:54:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/tools/gmx_nmtraj.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_nmtraj.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_nmtraj.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_nmtraj.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_sham.lo ../../../src/tools/gmx_sham.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_sham.c  -fPIC -DPIC -o .libs/gmx_sham.o
../../../src/tools/gmx_sham.c: In function 'do_sham':
../../../src/tools/gmx_sham.c:286:32: warning: unused variable 'd' [-Wunused-variable]
   int     i,j,k,imin,len,index,d,*nbin,*bindex,bi;
                                ^
../../../src/tools/gmx_sham.c: In function 'gmx_sham':
../../../src/tools/gmx_sham.c:778:41: warning: unused variable 'db' [-Wunused-variable]
   double   *av,*sig,cum1,cum2,cum3,cum4,db;
                                         ^~
../../../src/tools/gmx_sham.c:778:36: warning: unused variable 'cum4' [-Wunused-variable]
   double   *av,*sig,cum1,cum2,cum3,cum4,db;
                                    ^~~~
../../../src/tools/gmx_sham.c:778:31: warning: unused variable 'cum3' [-Wunused-variable]
   double   *av,*sig,cum1,cum2,cum3,cum4,db;
                               ^~~~
../../../src/tools/gmx_sham.c:778:26: warning: unused variable 'cum2' [-Wunused-variable]
   double   *av,*sig,cum1,cum2,cum3,cum4,db;
                          ^~~~
../../../src/tools/gmx_sham.c:778:21: warning: unused variable 'cum1' [-Wunused-variable]
   double   *av,*sig,cum1,cum2,cum3,cum4,db;
                     ^~~~
../../../src/tools/gmx_sham.c:778:17: warning: unused variable 'sig' [-Wunused-variable]
   double   *av,*sig,cum1,cum2,cum3,cum4,db;
                 ^~~
../../../src/tools/gmx_sham.c:778:13: warning: unused variable 'av' [-Wunused-variable]
   double   *av,*sig,cum1,cum2,cum3,cum4,db;
             ^~
../../../src/tools/gmx_sham.c:776:66: warning: unused variable 'error' [-Wunused-variable]
   real     **val,**et_val,**dt_val,*t,*e_t,e_dt,d_dt,*d_t,dt,tot,error;
                                                                  ^~~~~
../../../src/tools/gmx_sham.c:776:62: warning: unused variable 'tot' [-Wunused-variable]
   real     **val,**et_val,**dt_val,*t,*e_t,e_dt,d_dt,*d_t,dt,tot,error;
                                                              ^~~
../../../src/tools/gmx_sham.c:775:51: warning: unused variable 'j' [-Wunused-variable]
   int      n,e_n,d_n,nlast,s,nset,e_nset,d_nset,i,j=0,*idim,*ibox;
                                                   ^
../../../src/tools/gmx_sham.c:775:28: warning: unused variable 's' [-Wunused-variable]
   int      n,e_n,d_n,nlast,s,nset,e_nset,d_nset,i,j=0,*idim,*ibox;
                            ^
../../../src/tools/gmx_sham.c:775:22: warning: unused variable 'nlast' [-Wunused-variable]
   int      n,e_n,d_n,nlast,s,nset,e_nset,d_nset,i,j=0,*idim,*ibox;
                      ^~~~~
../../../src/tools/gmx_sham.c:774:13: warning: unused variable 'out' [-Wunused-variable]
   FILE     *out;
             ^~~
../../../src/tools/gmx_sham.c:728:35: warning: unused variable 'resol' [-Wunused-variable]
   static int  nsets_in=1,nb_min=4,resol=10,nlevels=25;
                                   ^~~~~
../../../src/tools/gmx_sham.c:728:26: warning: unused variable 'nb_min' [-Wunused-variable]
   static int  nsets_in=1,nb_min=4,resol=10,nlevels=25;
                          ^~~~~~
../../../src/tools/gmx_sham.c:723:15: warning: unused variable 'bShamEner' [-Wunused-variable]
   static bool bShamEner=TRUE,bSham=TRUE;
               ^~~~~~~~~
../../../src/tools/gmx_sham.c:722:56: warning: unused variable 'bPower' [-Wunused-variable]
   static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE;
                                                        ^~~~~~
../../../src/tools/gmx_sham.c:722:41: warning: unused variable 'bEeFitAc' [-Wunused-variable]
   static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE;
                                         ^~~~~~~~
../../../src/tools/gmx_sham.c:722:28: warning: unused variable 'bEENLC' [-Wunused-variable]
   static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE;
                            ^~~~~~
../../../src/tools/gmx_sham.c:722:15: warning: unused variable 'bEESEF' [-Wunused-variable]
   static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE;
               ^~~~~~
../../../src/tools/gmx_sham.c:721:66: warning: unused variable 'bXYdy' [-Wunused-variable]
   static bool bHaveT=TRUE,bDer=FALSE,bSubAv=TRUE,bAverCorr=FALSE,bXYdy=FALSE;
                                                                  ^~~~~
../../../src/tools/gmx_sham.c:721:50: warning: unused variable 'bAverCorr' [-Wunused-variable]
   static bool bHaveT=TRUE,bDer=FALSE,bSubAv=TRUE,bAverCorr=FALSE,bXYdy=FALSE;
                                                  ^~~~~~~~~
../../../src/tools/gmx_sham.c:721:38: warning: unused variable 'bSubAv' [-Wunused-variable]
   static bool bHaveT=TRUE,bDer=FALSE,bSubAv=TRUE,bAverCorr=FALSE,bXYdy=FALSE;
                                      ^~~~~~
../../../src/tools/gmx_sham.c:720:36: warning: unused variable 'filtlen' [-Wunused-variable]
   static real tb=-1,te=-1,frac=0.5,filtlen=0,binwidth=0.1;
                                    ^~~~~~~
../../../src/tools/gmx_sham.c:720:27: warning: unused variable 'frac' [-Wunused-variable]
   static real tb=-1,te=-1,frac=0.5,filtlen=0,binwidth=0.1;
                           ^~~~
At top level:
../../../src/tools/gmx_sham.c:720:27: warning: 'frac' defined but not used [-Wunused-variable]
../../../src/tools/gmx_sham.c:720:36: warning: 'filtlen' defined but not used [-Wunused-variable]
   static real tb=-1,te=-1,frac=0.5,filtlen=0,binwidth=0.1;
                                    ^~~~~~~
../../../src/tools/gmx_sham.c:721:38: warning: 'bSubAv' defined but not used [-Wunused-variable]
   static bool bHaveT=TRUE,bDer=FALSE,bSubAv=TRUE,bAverCorr=FALSE,bXYdy=FALSE;
                                      ^~~~~~
../../../src/tools/gmx_sham.c:721:50: warning: 'bAverCorr' defined but not used [-Wunused-variable]
   static bool bHaveT=TRUE,bDer=FALSE,bSubAv=TRUE,bAverCorr=FALSE,bXYdy=FALSE;
                                                  ^~~~~~~~~
../../../src/tools/gmx_sham.c:721:66: warning: 'bXYdy' defined but not used [-Wunused-variable]
   static bool bHaveT=TRUE,bDer=FALSE,bSubAv=TRUE,bAverCorr=FALSE,bXYdy=FALSE;
                                                                  ^~~~~
../../../src/tools/gmx_sham.c:722:15: warning: 'bEESEF' defined but not used [-Wunused-variable]
   static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE;
               ^~~~~~
../../../src/tools/gmx_sham.c:722:28: warning: 'bEENLC' defined but not used [-Wunused-variable]
   static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE;
                            ^~~~~~
../../../src/tools/gmx_sham.c:722:41: warning: 'bEeFitAc' defined but not used [-Wunused-variable]
   static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE;
                                         ^~~~~~~~
../../../src/tools/gmx_sham.c:722:56: warning: 'bPower' defined but not used [-Wunused-variable]
   static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE;
                                                        ^~~~~~
../../../src/tools/gmx_sham.c:723:15: warning: 'bShamEner' defined but not used [-Wunused-variable]
   static bool bShamEner=TRUE,bSham=TRUE;
               ^~~~~~~~~
../../../src/tools/gmx_sham.c:728:26: warning: 'nb_min' defined but not used [-Wunused-variable]
   static int  nsets_in=1,nb_min=4,resol=10,nlevels=25;
                          ^~~~~~
../../../src/tools/gmx_sham.c:728:35: warning: 'resol' defined but not used [-Wunused-variable]
   static int  nsets_in=1,nb_min=4,resol=10,nlevels=25;
                                   ^~~~~
In file included from ../../../src/tools/gmx_sham.c:56:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/tools/gmx_sham.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_sham.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_sham.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_sham.c:41:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_trjorder.lo ../../../src/tools/gmx_trjorder.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_trjorder.c  -fPIC -DPIC -o .libs/gmx_trjorder.o
In file included from ../../../src/tools/gmx_trjorder.c:49:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_trjorder.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_trjorder.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_trjorder.c:42:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_trjcat.lo ../../../src/tools/gmx_trjcat.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_trjcat.c  -fPIC -DPIC -o .libs/gmx_trjcat.o
../../../src/tools/gmx_trjcat.c: In function 'scan_trj_files':
../../../src/tools/gmx_trjcat.c:78:8: warning: unused variable 't' [-Wunused-variable]
   real t;
        ^
../../../src/tools/gmx_trjcat.c: In function 'gmx_trjcat':
../../../src/tools/gmx_trjcat.c:392:58: warning: unused variable 'last_ok_step' [-Wunused-variable]
   int         earliersteps,nfile_in,nfile_out,*cont_type,last_ok_step;
                                                          ^~~~~~~~~~~~
../../../src/tools/gmx_trjcat.c:388:34: warning: unused variable 'in_file' [-Wunused-variable]
   char        **fnms,**fnms_out,*in_file,*out_file;
                                  ^~~~~~~
../../../src/tools/gmx_trjcat.c:385:19: warning: unused variable 'v' [-Wunused-variable]
   rvec        *x,*v;
                   ^
../../../src/tools/gmx_trjcat.c:385:16: warning: unused variable 'x' [-Wunused-variable]
   rvec        *x,*v;
                ^
../../../src/tools/gmx_trjcat.c:384:53: warning: unused variable 'trjout' [-Wunused-variable]
   int         status,ftpin,i,frame,frame_out,step=0,trjout=0;
                                                     ^~~~~~
../../../src/tools/gmx_trjcat.c:384:22: warning: unused variable 'ftpin' [-Wunused-variable]
   int         status,ftpin,i,frame,frame_out,step=0,trjout=0;
                      ^~~~~
In file included from ../../../src/tools/gmx_trjcat.c:56:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_trjcat.c:56:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_trjcat.c:52:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_trjcat.c:50:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_trjcat.c:46:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_genconf.lo ../../../src/tools/gmx_genconf.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_genconf.c  -fPIC -DPIC -o .libs/gmx_genconf.o
../../../src/tools/gmx_genconf.c:93:13: warning: 'move_x' defined but not used [-Wunused-function]
 static void move_x(int natoms,rvec x[],matrix box)
             ^~~~~~
In file included from ../../../src/tools/gmx_genconf.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_genconf.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_genconf.c:42:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_genconf.c:40:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_wham.lo ../../../src/tools/gmx_wham.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_wham.c  -fPIC -DPIC -o .libs/gmx_wham.o
In file included from ../../../src/tools/gmx_wham.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_wham.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_wham.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_wham.c:44:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
../../../src/tools/gmx_wham.c: In function 'open_pdo_pipe':
../../../src/tools/gmx_wham.c:1201:27: warning: ' -c < ' directive writing 6 bytes into a region of size between 1 and 1024 [-Wformat-overflow=]
         sprintf(Buffer,"%s -c < %s",gunzip,fn);
                           ^~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../src/tools/gmx_wham.c:37:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 7 or more bytes (assuming 1030) into a destination of size 1024
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_genpr.lo ../../../src/tools/gmx_genpr.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_genpr.c  -fPIC -DPIC -o .libs/gmx_genpr.o
In file included from ../../../src/tools/gmx_genpr.c:50:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_genpr.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_genpr.c:44:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_genpr.c:42:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_vanhove.lo ../../../src/tools/gmx_vanhove.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_vanhove.c  -fPIC -DPIC -o .libs/gmx_vanhove.o
In file included from ../../../src/tools/gmx_vanhove.c:56:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/tools/gmx_vanhove.c:51:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_vanhove.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_vanhove.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_genbox.lo ../../../src/tools/gmx_genbox.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_genbox.c  -fPIC -DPIC -o .libs/gmx_genbox.o
../../../src/tools/gmx_genbox.c: In function 'gmx_genbox':
../../../src/tools/gmx_genbox.c:665:11: warning: unused variable 'pbc' [-Wunused-variable]
   t_pbc   pbc;
           ^~~
In file included from ../../../src/tools/gmx_genbox.c:61:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_genbox.c:57:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_genbox.c:55:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_genbox.c:55:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_genbox.c:47:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
../../../src/tools/gmx_genbox.c: In function 'update_top.constprop':
../../../src/tools/gmx_genbox.c:538:19: warning: ' in water
   ' directive writing 10 bytes into a region of size between 1 and 4096 [-Wformat-overflow=]
    sprintf(buf,"%s in water\n",buf2);
                   ^~~~~~~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/tools/gmx_genbox.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 11 and 4106 bytes into a destination of size 4096
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_eneconv.lo ../../../src/tools/gmx_eneconv.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_eneconv.c  -fPIC -DPIC -o .libs/gmx_eneconv.o
../../../src/tools/gmx_eneconv.c: In function 'gmx_eneconv':
../../../src/tools/gmx_eneconv.c:427:14: warning: unused variable 'ok' [-Wunused-variable]
   bool       ok;
              ^~
../../../src/tools/gmx_eneconv.c:426:35: warning: unused variable 'chptr' [-Wunused-variable]
   char       inputstring[STRLEN],*chptr;
                                   ^~~~~
../../../src/tools/gmx_eneconv.c:426:14: warning: unused variable 'inputstring' [-Wunused-variable]
   char       inputstring[STRLEN],*chptr;
              ^~~~~~~~~~~
../../../src/tools/gmx_eneconv.c:425:42: warning: unused variable 't1' [-Wunused-variable]
   real       *readtime,*settime,timestep,t1,tadjust;
                                          ^~
../../../src/tools/gmx_eneconv.c:421:42: warning: unused variable 'j' [-Wunused-variable]
   int        nre,nremax,this_nre,nfile,i,j,kkk,nset,*set=NULL;
                                          ^
At top level:
../../../src/tools/gmx_eneconv.c:101:13: warning: 'same_time' defined but not used [-Wunused-function]
 static bool same_time(real t1,real t2)
             ^~~~~~~~~
In file included from ../../../src/tools/gmx_eneconv.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_eneconv.c:45:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o calcpot.lo ../../../src/tools/calcpot.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/calcpot.c  -fPIC -DPIC -o .libs/calcpot.o
../../../src/tools/calcpot.c: In function 'c_tabpot':
../../../src/tools/calcpot.c:79:8: warning: unused variable 'qqO' [-Wunused-variable]
   real qqO,qj;
        ^~~
../../../src/tools/calcpot.c:78:43: warning: unused variable 'rinv2O' [-Wunused-variable]
   real txO,tyO,tzO,vcO,fsO,qO,rsqO,rinv1O,rinv2O;
                                           ^~~~~~
../../../src/tools/calcpot.c:78:24: warning: unused variable 'fsO' [-Wunused-variable]
   real txO,tyO,tzO,vcO,fsO,qO,rsqO,rinv1O,rinv2O;
                        ^~~
../../../src/tools/calcpot.c:78:20: warning: unused variable 'vcO' [-Wunused-variable]
   real txO,tyO,tzO,vcO,fsO,qO,rsqO,rinv1O,rinv2O;
                    ^~~
../../../src/tools/calcpot.c:78:16: warning: unused variable 'tzO' [-Wunused-variable]
   real txO,tyO,tzO,vcO,fsO,qO,rsqO,rinv1O,rinv2O;
                ^~~
../../../src/tools/calcpot.c:78:12: warning: unused variable 'tyO' [-Wunused-variable]
   real txO,tyO,tzO,vcO,fsO,qO,rsqO,rinv1O,rinv2O;
            ^~~
../../../src/tools/calcpot.c:78:8: warning: unused variable 'txO' [-Wunused-variable]
   real txO,tyO,tzO,vcO,fsO,qO,rsqO,rinv1O,rinv2O;
        ^~~
../../../src/tools/calcpot.c:76:28: warning: unused variable 'fzO' [-Wunused-variable]
   real fxJ,fyJ,fzJ,fxO,fyO,fzO;
                            ^~~
../../../src/tools/calcpot.c:76:24: warning: unused variable 'fyO' [-Wunused-variable]
   real fxJ,fyJ,fzJ,fxO,fyO,fzO;
                        ^~~
../../../src/tools/calcpot.c:76:20: warning: unused variable 'fxO' [-Wunused-variable]
   real fxJ,fyJ,fzJ,fxO,fyO,fzO;
                    ^~~
../../../src/tools/calcpot.c:76:16: warning: unused variable 'fzJ' [-Wunused-variable]
   real fxJ,fyJ,fzJ,fxO,fyO,fzO;
                ^~~
../../../src/tools/calcpot.c:76:12: warning: unused variable 'fyJ' [-Wunused-variable]
   real fxJ,fyJ,fzJ,fxO,fyO,fzO;
            ^~~
../../../src/tools/calcpot.c:76:8: warning: unused variable 'fxJ' [-Wunused-variable]
   real fxJ,fyJ,fzJ,fxO,fyO,fzO;
        ^~~
../../../src/tools/calcpot.c:75:38: warning: unused variable 'ggid' [-Wunused-variable]
   int  ii,k,n,jnr,ii3,nj0,nj1,is3,j3,ggid;
                                      ^~~~
../../../src/tools/calcpot.c:71:50: warning: unused variable 'FF' [-Wunused-variable]
   real r1,r1t,fijC,eps,eps2,Y,F,Fp,Geps,Heps2,VV,FF;
                                                  ^~
../../../src/tools/calcpot.c:71:15: warning: unused variable 'fijC' [-Wunused-variable]
   real r1,r1t,fijC,eps,eps2,Y,F,Fp,Geps,Heps2,VV,FF;
               ^~~~
../../../src/tools/calcpot.c:70:14: warning: unused variable 'two' [-Wunused-variable]
   const real two = 2.000000;
              ^~~
../../../src/tools/calcpot.c: In function 'calc_pot':
../../../src/tools/calcpot.c:176:15: warning: variable 'box_size' set but not used [-Wunused-but-set-variable]
   rvec        box_size;
               ^~~~~~~~
../../../src/tools/calcpot.c: In function 'init_calcpot':
../../../src/tools/calcpot.c:238:12: warning: variable 'box_size' set but not used [-Wunused-but-set-variable]
   rvec     box_size;
            ^~~~~~~~
In file included from ../../../src/tools/calcpot.c:46:
At top level:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/tools/calcpot.c:40:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/calcpot.c:40:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_wheel.lo ../../../src/tools/gmx_wheel.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_wheel.c  -fPIC -DPIC -o .libs/gmx_wheel.o
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_wheel.c:55:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_wheel.c:52:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_wheel.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_wheel.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_genion.lo ../../../src/tools/gmx_genion.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_genion.c  -fPIC -DPIC -o .libs/gmx_genion.o
../../../src/tools/gmx_genion.c: In function 'insert_ion':
../../../src/tools/gmx_genion.c:72:8: warning: unused variable 'xei' [-Wunused-variable]
   rvec xei,dx;
        ^~~
../../../src/tools/gmx_genion.c:70:29: warning: unused variable 'm' [-Wunused-variable]
   int  i,ii,ei,owater,wlast,m,nw;
                             ^
../../../src/tools/gmx_genion.c:70:23: warning: unused variable 'wlast' [-Wunused-variable]
   int  i,ii,ei,owater,wlast,m,nw;
                       ^~~~~
../../../src/tools/gmx_genion.c:70:16: warning: unused variable 'owater' [-Wunused-variable]
   int  i,ii,ei,owater,wlast,m,nw;
                ^~~~~~
In file included from ../../../src/tools/gmx_genion.c:54:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/tools/gmx_genion.c:51:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_genion.c:48:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_genion.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_genion.c:41:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o editconf.o ../../../src/tools/editconf.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o eneconv.o ../../../src/tools/eneconv.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o genbox.o ../../../src/tools/genbox.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o genconf.o ../../../src/tools/genconf.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o genrestr.o ../../../src/tools/genrestr.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_nmtraj.o ../../../src/tools/g_nmtraj.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o addconf.lo ../../../src/tools/addconf.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/addconf.c  -fPIC -DPIC -o .libs/addconf.o
../../../src/tools/addconf.c: In function 'do_nsgrid':
../../../src/tools/addconf.c:205:14: warning: variable 'box_size' set but not used [-Wunused-but-set-variable]
   rvec       box_size;
              ^~~~~~~~
../../../src/tools/addconf.c: In function 'add_conf':
../../../src/tools/addconf.c:328:23: warning: unused variable 'xpp' [-Wunused-variable]
   rvec       dx,xi,xj,xpp,*x_all,*v_all;
                       ^~~
../../../src/tools/addconf.c:326:34: warning: unused variable 'dz1' [-Wunused-variable]
   int        dx0,dx1,dy0,dy1,dz0,dz1;
                                  ^~~
../../../src/tools/addconf.c:326:30: warning: unused variable 'dz0' [-Wunused-variable]
   int        dx0,dx1,dy0,dy1,dz0,dz1;
                              ^~~
../../../src/tools/addconf.c:326:26: warning: unused variable 'dy1' [-Wunused-variable]
   int        dx0,dx1,dy0,dy1,dz0,dz1;
                          ^~~
../../../src/tools/addconf.c:326:22: warning: unused variable 'dy0' [-Wunused-variable]
   int        dx0,dx1,dy0,dy1,dz0,dz1;
                      ^~~
../../../src/tools/addconf.c:326:18: warning: unused variable 'dx1' [-Wunused-variable]
   int        dx0,dx1,dy0,dy1,dz0,dz1;
                  ^~~
../../../src/tools/addconf.c:326:14: warning: unused variable 'dx0' [-Wunused-variable]
   int        dx0,dx1,dy0,dy1,dz0,dz1;
              ^~~
../../../src/tools/addconf.c:325:44: warning: unused variable 'maxincell' [-Wunused-variable]
   int        prev,resnr,nresadd,d,k,ncells,maxincell;
                                            ^~~~~~~~~
../../../src/tools/addconf.c:325:37: warning: unused variable 'ncells' [-Wunused-variable]
   int        prev,resnr,nresadd,d,k,ncells,maxincell;
                                     ^~~~~~
../../../src/tools/addconf.c:325:35: warning: unused variable 'k' [-Wunused-variable]
   int        prev,resnr,nresadd,d,k,ncells,maxincell;
                                   ^
../../../src/tools/addconf.c:325:33: warning: unused variable 'd' [-Wunused-variable]
   int        prev,resnr,nresadd,d,k,ncells,maxincell;
                                 ^
../../../src/tools/addconf.c:325:19: warning: unused variable 'resnr' [-Wunused-variable]
   int        prev,resnr,nresadd,d,k,ncells,maxincell;
                   ^~~~~
../../../src/tools/addconf.c:324:47: warning: unused variable 'iprot' [-Wunused-variable]
   int        i,j,jj,m,j0,j1,jjj,jnres,jnr,inr,iprot,is1,is2;
                                               ^~~~~
../../../src/tools/addconf.c:324:21: warning: unused variable 'm' [-Wunused-variable]
   int        i,j,jj,m,j0,j1,jjj,jnres,jnr,inr,iprot,is1,is2;
                     ^
../../../src/tools/addconf.c:324:18: warning: unused variable 'jj' [-Wunused-variable]
   int        i,j,jj,m,j0,j1,jjj,jnres,jnr,inr,iprot,is1,is2;
                  ^~
../../../src/tools/addconf.c:322:47: warning: unused variable 'ib2' [-Wunused-variable]
   real       max_vdw,*r_prot,*r_all,n2,r2,ib1,ib2;
                                               ^~~
../../../src/tools/addconf.c:322:43: warning: unused variable 'ib1' [-Wunused-variable]
   real       max_vdw,*r_prot,*r_all,n2,r2,ib1,ib2;
                                           ^~~
At top level:
../../../src/tools/addconf.c:70:13: warning: 'set_margin' defined but not used [-Wunused-function]
 static void set_margin(t_atoms *atoms, rvec *x, real *r)
             ^~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/addconf.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/addconf.c:46:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/tools/addconf.c:42:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/addconf.c:42:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o trjcat.o ../../../src/tools/trjcat.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o trjconv.o ../../../src/tools/trjconv.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o edittop.lo ../../../src/tools/edittop.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/edittop.c  -fPIC -DPIC -o .libs/edittop.o
../../../src/tools/edittop.c: In function 'delete_from_block':
../../../src/tools/edittop.c:104:17: warning: unused variable 'k' [-Wunused-variable]
   int i,i1,j1,j,k;
                 ^
../../../src/tools/edittop.c:104:12: warning: unused variable 'j1' [-Wunused-variable]
   int i,i1,j1,j,k;
            ^~
../../../src/tools/edittop.c: In function 'delete_atom':
../../../src/tools/edittop.c:161:7: warning: unused variable 'k' [-Wunused-variable]
   int k;
       ^
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o trjorder.o ../../../src/tools/trjorder.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o wheel.o ../../../src/tools/wheel.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o xpm2ps.o ../../../src/tools/xpm2ps.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o genion.o ../../../src/tools/genion.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_analyze.o ../../../src/tools/g_analyze.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o mk_angndx.o ../../../src/tools/mk_angndx.c
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/mk_angndx.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/mk_angndx.c:42:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_xpm2ps.lo ../../../src/tools/gmx_xpm2ps.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_xpm2ps.c  -fPIC -DPIC -o .libs/gmx_xpm2ps.o
../../../src/tools/gmx_xpm2ps.c: In function 'xpm_mat':
../../../src/tools/gmx_xpm2ps.c:559:14: warning: unused variable 'k' [-Wunused-variable]
   int    i,j,k,x,y,col;
              ^
../../../src/tools/gmx_xpm2ps.c:559:12: warning: unused variable 'j' [-Wunused-variable]
   int    i,j,k,x,y,col;
            ^
../../../src/tools/gmx_xpm2ps.c:558:10: warning: unused variable 'buf' [-Wunused-variable]
   char   buf[100];
          ^~~
../../../src/tools/gmx_xpm2ps.c: In function 'tick_spacing':
../../../src/tools/gmx_xpm2ps.c:599:18: warning: unused variable 'bFive' [-Wunused-variable]
   bool bTryAgain,bFive;
                  ^~~~~
../../../src/tools/gmx_xpm2ps.c: In function 'ps_mat':
../../../src/tools/gmx_xpm2ps.c:644:12: warning: unused variable 'j' [-Wunused-variable]
   int    i,j,x,y,col,leg=0;
            ^
../../../src/tools/gmx_xpm2ps.c: In function 'write_combined_matrix':
../../../src/tools/gmx_xpm2ps.c:919:14: warning: unused variable 'map' [-Wunused-variable]
   t_mapping *map=NULL;
              ^~~
../../../src/tools/gmx_xpm2ps.c: In function 'gmx_xpm2ps':
../../../src/tools/gmx_xpm2ps.c:1127:56: warning: unused variable 'bAdd' [-Wunused-variable]
   static bool bFrame=TRUE,bZeroLine=FALSE,bYonce=FALSE,bAdd=FALSE;
                                                        ^~~~
At top level:
../../../src/tools/gmx_xpm2ps.c:1127:56: warning: 'bAdd' defined but not used [-Wunused-variable]
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_xpm2ps.c:45:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_xpm2ps.c:42:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
../../../src/tools/gmx_xpm2ps.c: In function 'ps_mat':
../../../src/tools/gmx_xpm2ps.c:346:22: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=]
       sprintf(buf,"%g",mat[i].axis_x[j]);
                      ^
In file included from /usr/include/stdio.h:862,
                 from ../../../include/string2.h:56,
                 from ../../../src/tools/gmx_xpm2ps.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 2 and 14 bytes into a destination of size 12
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/tools/gmx_xpm2ps.c:374:22: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=]
       sprintf(buf,"%g",mat[i].axis_y[j]);
                      ^
In file included from /usr/include/stdio.h:862,
                 from ../../../include/string2.h:56,
                 from ../../../src/tools/gmx_xpm2ps.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 2 and 14 bytes into a destination of size 12
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_angle.o ../../../src/tools/g_angle.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_anaeig.o ../../../src/tools/g_anaeig.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_bond.o ../../../src/tools/g_bond.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_editconf.lo ../../../src/tools/gmx_editconf.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_editconf.c  -fPIC -DPIC -o .libs/gmx_editconf.o
../../../src/tools/gmx_editconf.c: In function 'calc_geom':
../../../src/tools/gmx_editconf.c:103:12: warning: unused variable 'grpnames' [-Wunused-variable]
   char    *grpnames;
            ^~~~~~~~
../../../src/tools/gmx_editconf.c: In function 'set_pdb_conf_bfac':
../../../src/tools/gmx_editconf.c:195:9: warning: unused variable 'out' [-Wunused-variable]
   FILE *out;
         ^~~
../../../src/tools/gmx_editconf.c: In function 'gmx_editconf':
../../../src/tools/gmx_editconf.c:518:35: warning: unused variable 'zcent' [-Wunused-variable]
   real       xs,ys,zs,xcent,ycent,zcent,diam=0,mass=0,d,vdw;
                                   ^~~~~
../../../src/tools/gmx_editconf.c:518:29: warning: unused variable 'ycent' [-Wunused-variable]
   real       xs,ys,zs,xcent,ycent,zcent,diam=0,mass=0,d,vdw;
                             ^~~~~
../../../src/tools/gmx_editconf.c:518:23: warning: unused variable 'xcent' [-Wunused-variable]
   real       xs,ys,zs,xcent,ycent,zcent,diam=0,mass=0,d,vdw;
                       ^~~~~
../../../src/tools/gmx_editconf.c:518:20: warning: unused variable 'zs' [-Wunused-variable]
   real       xs,ys,zs,xcent,ycent,zcent,diam=0,mass=0,d,vdw;
                    ^~
../../../src/tools/gmx_editconf.c:518:17: warning: unused variable 'ys' [-Wunused-variable]
   real       xs,ys,zs,xcent,ycent,zcent,diam=0,mass=0,d,vdw;
                 ^~
../../../src/tools/gmx_editconf.c:518:14: warning: unused variable 'xs' [-Wunused-variable]
   real       xs,ys,zs,xcent,ycent,zcent,diam=0,mass=0,d,vdw;
              ^~
../../../src/tools/gmx_editconf.c:516:38: warning: unused variable 'bCubic' [-Wunused-variable]
   bool       bIndex,bSetSize,bSetAng,bCubic,bDist,bSetCenter;
                                      ^~~~~~
../../../src/tools/gmx_editconf.c:512:30: warning: unused variable 'tindex' [-Wunused-variable]
   atom_id    *index,*sindex,*tindex;
                              ^~~~~~
../../../src/tools/gmx_editconf.c:511:26: warning: unused variable 'tsize' [-Wunused-variable]
   int        isize,ssize,tsize;
                          ^~~~~
../../../src/tools/gmx_editconf.c:456:33: warning: unused variable 'to_diam' [-Wunused-variable]
   static real dist=0.0,rbox=0.0,to_diam=0.0;
                                 ^~~~~~~
../../../src/tools/gmx_editconf.c:456:24: warning: unused variable 'rbox' [-Wunused-variable]
   static real dist=0.0,rbox=0.0,to_diam=0.0;
                        ^~~~
At top level:
../../../src/tools/gmx_editconf.c:456:24: warning: 'rbox' defined but not used [-Wunused-variable]
../../../src/tools/gmx_editconf.c:456:33: warning: 'to_diam' defined but not used [-Wunused-variable]
   static real dist=0.0,rbox=0.0,to_diam=0.0;
                                 ^~~~~~~
../../../src/tools/gmx_editconf.c:79:14: warning: 'pdbtp' defined but not used [-Wunused-variable]
 static char *pdbtp[epdbNR]={"ATOM  ","HETATM"};
              ^~~~~
In file included from ../../../src/tools/gmx_editconf.c:53:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_editconf.c:53:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_editconf.c:49:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_editconf.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_editconf.c:43:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_bundle.o ../../../src/tools/g_bundle.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_chi.o ../../../src/tools/g_chi.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_cluster.o ../../../src/tools/g_cluster.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_covar.o ../../../src/tools/g_covar.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_trjconv.lo ../../../src/tools/gmx_trjconv.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_trjconv.c  -fPIC -DPIC -o .libs/gmx_trjconv.o
../../../src/tools/gmx_trjconv.c: In function 'calc_pbc_cluster':
../../../src/tools/gmx_trjconv.c:89:34: warning: unused variable 'is' [-Wunused-variable]
   int     m,i,j,j0,j1,jj,ai,iter,is;
                                  ^~
../../../src/tools/gmx_trjconv.c: In function 'put_molecule_com_in_box':
../../../src/tools/gmx_trjconv.c:252:29: warning: unused variable 'dx' [-Wunused-variable]
   rvec    com,new_com,shift,dx,box_center;
                             ^~
../../../src/tools/gmx_trjconv.c: In function 'put_residue_com_in_box':
../../../src/tools/gmx_trjconv.c:303:37: warning: variable 'res_nat' set but not used [-Wunused-but-set-variable]
   atom_id i, j, res_start, res_end, res_nat;
                                     ^~~~~~~
../../../src/tools/gmx_trjconv.c: In function 'gmx_trjconv':
../../../src/tools/gmx_trjconv.c:726:16: warning: unused variable 'xdr' [-Wunused-variable]
   int          xdr=0;
                ^~~
../../../src/tools/gmx_trjconv.c:725:42: warning: unused variable 'command' [-Wunused-variable]
   char         top_title[256],title[256],command[256],filemode[5];
                                          ^~~~~~~
../../../src/tools/gmx_trjconv.c:715:21: warning: variable 'bFitXY' set but not used [-Wunused-but-set-variable]
   bool         bFit,bFitXY,bPFit,bReset;
                     ^~~~~~
../../../src/tools/gmx_trjconv.c:707:25: warning: unused variable 'gn_rms' [-Wunused-variable]
   char         *gn_fit,*gn_rms;
                         ^~~~~~
../../../src/tools/gmx_trjconv.c:706:26: warning: unused variable 'ind_rms' [-Wunused-variable]
   atom_id      *ind_fit,*ind_rms;
                          ^~~~~~~
../../../src/tools/gmx_trjconv.c:705:21: warning: unused variable 'irms' [-Wunused-variable]
   int          ifit,irms,my_clust=-1;
                     ^~~~
../../../src/tools/gmx_trjconv.c:695:55: warning: unused variable 'nre' [-Wunused-variable]
   int          m,i,d,frame,outframe,natoms,nout,ncent,nre,newstep=0,model_nr;
                                                       ^~~
../../../src/tools/gmx_trjconv.c:694:23: warning: unused variable 'lambda' [-Wunused-variable]
   real         xtcpr, lambda,*w_rls=NULL;
                       ^~~~~~
../../../src/tools/gmx_trjconv.c:694:16: warning: unused variable 'xtcpr' [-Wunused-variable]
   real         xtcpr, lambda,*w_rls=NULL;
                ^~~~~
../../../src/tools/gmx_trjconv.c:693:49: warning: unused variable 'dx' [-Wunused-variable]
   rvec         *xp=NULL,x_shift,hbox,box_center,dx;
                                                 ^~
../../../src/tools/gmx_trjconv.c:693:38: warning: unused variable 'box_center' [-Wunused-variable]
   rvec         *xp=NULL,x_shift,hbox,box_center,dx;
                                      ^~~~~~~~~~
In file included from ../../../src/tools/gmx_trjconv.c:57:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_trjconv.c:57:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_trjconv.c:53:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_trjconv.c:51:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_trjconv.c:47:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
../../../src/tools/gmx_trjconv.c: In function 'gmx_trjconv':
../../../src/tools/gmx_trjconv.c:1325:46: warning: '%s' directive writing up to 255 bytes into a region of size 233 [-Wformat-overflow=]
        sprintf(title,"Generated by trjconv : %s t= %9.5f",
                                              ^~
         top_title,fr.time);
         ~~~~~~~~~                             
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../include/typedefs.h:52,
                 from ../../../include/macros.h:49,
                 from ../../../src/tools/gmx_trjconv.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 37 and 599 bytes into a destination of size 256
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/tools/gmx_trjconv.c:1336:20: warning: ' t= ' directive writing 4 bytes into a region of size between 1 and 256 [-Wformat-overflow=]
   sprintf(title,"%s t= %9.5f",top_title,frout.time);
                    ^~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../include/typedefs.h:52,
                 from ../../../include/macros.h:49,
                 from ../../../src/tools/gmx_trjconv.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 14 and 576 bytes into a destination of size 256
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_confrms.o ../../../src/tools/g_confrms.c
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_density.o ../../../src/tools/g_density.c
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_densmap.o ../../../src/tools/g_densmap.c
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_current.o ../../../src/tools/g_current.c
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_dielectric.o ../../../src/tools/g_dielectric.c
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_dih.o ../../../src/tools/g_dih.c
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_helixorient.o ../../../src/tools/g_helixorient.c
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_principal.o ../../../src/tools/g_principal.c
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_dipoles.o ../../../src/tools/g_dipoles.c
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_dist.o ../../../src/tools/g_dist.c
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_disre.o ../../../src/tools/g_disre.c
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_dyndom.o ../../../src/tools/g_dyndom.c
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_enemat.o ../../../src/tools/g_enemat.c
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_filter.o ../../../src/tools/g_filter.c
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_gyrate.o ../../../src/tools/g_gyrate.c
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_energy.o ../../../src/tools/g_energy.c
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_lie.o ../../../src/tools/g_lie.c
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_helix.o ../../../src/tools/g_helix.c
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_hbond.o ../../../src/tools/g_hbond.c
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_h2order.o ../../../src/tools/g_h2order.c
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_msd.o ../../../src/tools/g_msd.c
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_mindist.o ../../../src/tools/g_mindist.c
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_nmeig.o ../../../src/tools/g_nmeig.c
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_morph.o ../../../src/tools/g_morph.c
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_nmens.o ../../../src/tools/g_nmens.c
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_order.o ../../../src/tools/g_order.c
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_polystat.o ../../../src/tools/g_polystat.c
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_rdf.o ../../../src/tools/g_rdf.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_rama.o ../../../src/tools/g_rama.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o anadock.o ../../../src/tools/anadock.c
../../../src/tools/anadock.c: In function 'rmsd_dist':
../../../src/tools/anadock.c:197:13: warning: variable 'dist' set but not used [-Wunused-but-set-variable]
   real rmsd,dist;
             ^~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/anadock.c:47:
At top level:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/anadock.c:46:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/anadock.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/anadock.c:41:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
../../../src/tools/anadock.c: In function 'main':
../../../src/tools/anadock.c:110:22: warning: '%d' directive writing between 1 and 10 bytes into a region of size between 0 and 255 [-Wformat-overflow=]
     sprintf(name,"%s_%d.pdb",buf,i+1);
                      ^~
../../../src/tools/anadock.c:110:18: note: directive argument in the range [1, 2147483647]
     sprintf(name,"%s_%d.pdb",buf,i+1);
                  ^~~~~~~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../include/typedefs.h:52,
                 from ../../../include/confio.h:44,
                 from ../../../src/tools/anadock.c:40:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 7 and 271 bytes into a destination of size 256
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_potential.o ../../../src/tools/g_potential.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_rmsf.o ../../../src/tools/g_rmsf.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_rotacf.o ../../../src/tools/g_rotacf.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_rms.o ../../../src/tools/g_rms.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_saltbr.o ../../../src/tools/g_saltbr.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_rmsdist.o ../../../src/tools/g_rmsdist.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_sham.o ../../../src/tools/g_sham.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_sas.o ../../../src/tools/g_sas.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_sgangle.o ../../../src/tools/g_sgangle.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_spol.o ../../../src/tools/g_spol.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_sdf.o ../../../src/tools/g_sdf.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_sorient.o ../../../src/tools/g_sorient.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_tcaf.o ../../../src/tools/g_tcaf.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_vanhove.o ../../../src/tools/g_vanhove.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_velacc.o ../../../src/tools/g_velacc.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_traj.o ../../../src/tools/g_traj.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_spatial.o ../../../src/tools/g_spatial.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_clustsize.o ../../../src/tools/g_clustsize.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_wham.o ../../../src/tools/g_wham.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_mdmat.o ../../../src/tools/g_mdmat.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_kinetics.o ../../../src/tools/g_kinetics.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o make_edi.o ../../../src/tools/make_edi.c
../../../src/tools/make_edi.c: In function 'sscan_list':
../../../src/tools/make_edi.c:185:14: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
              else status=sError; break;
              ^~~~
../../../src/tools/make_edi.c:185:34: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else'
              else status=sError; break;
                                  ^~~~~
../../../src/tools/make_edi.c: In function 'main':
../../../src/tools/make_edi.c:640:10: warning: variable 'bTop' set but not used [-Wunused-but-set-variable]
     bool bTop, bFit1;
          ^~~~
In file included from ../../../src/tools/make_edi.c:56:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/tools/make_edi.c:52:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/make_edi.c:50:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/make_edi.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/make_edi.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o sigeps.o ../../../src/tools/sigeps.c
../../../src/tools/sigeps.c: In function 'main':
../../../src/tools/sigeps.c:106:42: warning: unused variable 'pp' [-Wunused-variable]
   real      qq,x,oldx,minimum,mval,dp[2],pp[2];
                                          ^~
In file included from ../../../src/tools/sigeps.c:50:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/sigeps.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/sigeps.c:47:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/tools/sigeps.c:44:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/sigeps.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o make_ndx.o ../../../src/tools/make_ndx.c
In file included from ../../../src/tools/make_ndx.c:52:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/make_ndx.c:52:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/make_ndx.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/make_ndx.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
../../../src/tools/make_ndx.c: In function 'main':
../../../src/tools/make_ndx.c:994:20: warning: '_&_' directive writing 3 bytes into a region of size between 1 and 4096 [-Wformat-overflow=]
   sprintf(gname,"%s_&_%s",gname1,gname2);
                    ^~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/tools/make_ndx.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 4 and 8194 bytes into a destination of size 4096
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/tools/make_ndx.c:990:21: warning: '%s' directive writing up to 4095 bytes into a region of size between 0 and 4095 [-Wformat-overflow=]
   sprintf(gname,"%s_%s",gname1,gname2);
                     ^~         ~~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/tools/make_ndx.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 2 and 8192 bytes into a destination of size 4096
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -version-info 5:0:0 -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o libgmxana_mpi.la -rpath /usr/lib autocorr.lo expfit.lo polynomials.lo levenmar.lo anadih.lo pp2shift.lo dlist.lo eigio.lo lsq.lo cmat.lo eigensolver.lo nsc.lo hxprops.lo fitahx.lo gmx_analyze.lo gmx_anaeig.lo gmx_angle.lo gmx_bond.lo gmx_bundle.lo gmx_chi.lo gmx_cluster.lo gmx_confrms.lo gmx_covar.lo gmx_current.lo gmx_density.lo gmx_densmap.lo gmx_dih.lo gmx_dielectric.lo gmx_kinetics.lo gmx_spatial.lo gmx_dipoles.lo gmx_disre.lo gmx_dist.lo gmx_dyndom.lo gmx_enemat.lo gmx_energy.lo gmx_lie.lo gmx_filter.lo gmx_gyrate.lo gmx_h2order.lo gmx_hbond.lo gmx_helix.lo gmx_mindist.lo gmx_msd.lo gmx_morph.lo gmx_nmeig.lo gmx_nmens.lo gmx_order.lo gmx_principal.lo gmx_polystat.lo gmx_potential.lo gmx_rama.lo gmx_rdf.lo gmx_rms.lo gmx_rmsdist.lo gmx_rmsf.lo gmx_rotacf.lo gmx_saltbr.lo gmx_sas.lo gmx_sdf.lo gmx_sgangle.lo gmx_sorient.lo gmx_spol.lo gmx_tcaf.lo gmx_traj.lo gmx_velacc.lo gmx_helixorient.lo gmx_clustsize.lo gmx_mdmat.lo gmx_wham.lo correl.lo gmx_sham.lo gmx_nmtraj.lo gmx_trjconv.lo gmx_trjcat.lo gmx_trjorder.lo gmx_xpm2ps.lo gmx_editconf.lo gmx_genbox.lo gmx_genion.lo gmx_genconf.lo gmx_genpr.lo gmx_eneconv.lo gmx_vanhove.lo gmx_wheel.lo addconf.lo calcpot.lo edittop.lo ../gmxlib/libgmx_mpi.la	../mdlib/libmd_mpi.la	 -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
mpicc -shared  .libs/autocorr.o .libs/expfit.o .libs/polynomials.o .libs/levenmar.o .libs/anadih.o .libs/pp2shift.o .libs/dlist.o .libs/eigio.o .libs/lsq.o .libs/cmat.o .libs/eigensolver.o .libs/nsc.o .libs/hxprops.o .libs/fitahx.o .libs/gmx_analyze.o .libs/gmx_anaeig.o .libs/gmx_angle.o .libs/gmx_bond.o .libs/gmx_bundle.o .libs/gmx_chi.o .libs/gmx_cluster.o .libs/gmx_confrms.o .libs/gmx_covar.o .libs/gmx_current.o .libs/gmx_density.o .libs/gmx_densmap.o .libs/gmx_dih.o .libs/gmx_dielectric.o .libs/gmx_kinetics.o .libs/gmx_spatial.o .libs/gmx_dipoles.o .libs/gmx_disre.o .libs/gmx_dist.o .libs/gmx_dyndom.o .libs/gmx_enemat.o .libs/gmx_energy.o .libs/gmx_lie.o .libs/gmx_filter.o .libs/gmx_gyrate.o .libs/gmx_h2order.o .libs/gmx_hbond.o .libs/gmx_helix.o .libs/gmx_mindist.o .libs/gmx_msd.o .libs/gmx_morph.o .libs/gmx_nmeig.o .libs/gmx_nmens.o .libs/gmx_order.o .libs/gmx_principal.o .libs/gmx_polystat.o .libs/gmx_potential.o .libs/gmx_rama.o .libs/gmx_rdf.o .libs/gmx_rms.o .libs/gmx_rmsdist.o .libs/gmx_rmsf.o .libs/gmx_rotacf.o .libs/gmx_saltbr.o .libs/gmx_sas.o .libs/gmx_sdf.o .libs/gmx_sgangle.o .libs/gmx_sorient.o .libs/gmx_spol.o .libs/gmx_tcaf.o .libs/gmx_traj.o .libs/gmx_velacc.o .libs/gmx_helixorient.o .libs/gmx_clustsize.o .libs/gmx_mdmat.o .libs/gmx_wham.o .libs/correl.o .libs/gmx_sham.o .libs/gmx_nmtraj.o .libs/gmx_trjconv.o .libs/gmx_trjcat.o .libs/gmx_trjorder.o .libs/gmx_xpm2ps.o .libs/gmx_editconf.o .libs/gmx_genbox.o .libs/gmx_genion.o .libs/gmx_genconf.o .libs/gmx_genpr.o .libs/gmx_eneconv.o .libs/gmx_vanhove.o .libs/gmx_wheel.o .libs/addconf.o .libs/calcpot.o .libs/edittop.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/lib/openmpi/lib ../gmxlib/.libs/libgmx_mpi.so ../mdlib/.libs/libmd_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so  -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wl,-Rpath:/usr/lib/openmpi/lib -Wl,-soname -Wl,libgmxana_mpi.so.5 -o .libs/libgmxana_mpi.so.5.0.0
(cd .libs && rm -f libgmxana_mpi.so.5 && ln -s libgmxana_mpi.so.5.0.0 libgmxana_mpi.so.5)
(cd .libs && rm -f libgmxana_mpi.so && ln -s libgmxana_mpi.so.5.0.0 libgmxana_mpi.so)
creating libgmxana_mpi.la
(cd .libs && rm -f libgmxana_mpi.la && ln -s ../libgmxana_mpi.la libgmxana_mpi.la)
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o eneconv eneconv.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_eneconv.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/eneconv eneconv.o .libs/gmx_eneconv.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating eneconv
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o do_dssp do_dssp.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/do_dssp do_dssp.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating do_dssp
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_nmtraj g_nmtraj.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/eigio.o .libs/gmx_nmtraj.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_nmtraj g_nmtraj.o .libs/eigio.o .libs/gmx_nmtraj.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_nmtraj
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o genbox genbox.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/addconf.o .libs/gmx_genbox.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/genbox genbox.o .libs/addconf.o .libs/gmx_genbox.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating genbox
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o make_ndx make_ndx.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/make_ndx make_ndx.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating make_ndx
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o genconf genconf.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_genconf.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/genconf genconf.o .libs/gmx_genconf.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating genconf
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o genrestr genrestr.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_genpr.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/genrestr genrestr.o .libs/gmx_genpr.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating genrestr
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o editconf editconf.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_editconf.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/editconf editconf.o .libs/gmx_editconf.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating editconf
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o mk_angndx mk_angndx.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/mk_angndx mk_angndx.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating mk_angndx
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o trjconv trjconv.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_trjconv.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/trjconv trjconv.o .libs/gmx_trjconv.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating trjconv
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o trjcat trjcat.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_trjcat.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/trjcat trjcat.o .libs/gmx_trjcat.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating trjcat
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o trjorder trjorder.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_trjorder.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/trjorder trjorder.o .libs/gmx_trjorder.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating trjorder
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o wheel wheel.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_wheel.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/wheel wheel.o .libs/gmx_wheel.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating wheel
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o anadock anadock.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/lsq.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/anadock anadock.o .libs/lsq.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating anadock
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o genion genion.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/calcpot.o .libs/gmx_genion.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/genion genion.o .libs/calcpot.o .libs/gmx_genion.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating genion
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o xpm2ps xpm2ps.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_xpm2ps.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/xpm2ps xpm2ps.o .libs/gmx_xpm2ps.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating xpm2ps
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o make_edi make_edi.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/eigio.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/make_edi make_edi.o .libs/eigio.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating make_edi
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_bond g_bond.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/lsq.o .libs/gmx_bond.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_bond g_bond.o .libs/lsq.o .libs/gmx_bond.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_bond
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_anaeig g_anaeig.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/eigio.o .libs/gmx_anaeig.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_anaeig g_anaeig.o .libs/eigio.o .libs/gmx_anaeig.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_anaeig
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_angle g_angle.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/dlist.o .libs/anadih.o .libs/gmx_angle.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_angle g_angle.o .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/dlist.o .libs/anadih.o .libs/gmx_angle.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_angle
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_chi g_chi.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/pp2shift.o .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/dlist.o .libs/anadih.o .libs/gmx_chi.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_chi g_chi.o .libs/pp2shift.o .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/dlist.o .libs/anadih.o .libs/gmx_chi.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_chi
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_analyze g_analyze.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_hbond.o .libs/gmx_analyze.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_analyze g_analyze.o .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_hbond.o .libs/gmx_analyze.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_analyze
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_cluster g_cluster.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/eigensolver.o .libs/cmat.o .libs/gmx_cluster.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_cluster g_cluster.o .libs/eigensolver.o .libs/cmat.o .libs/gmx_cluster.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_cluster
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_bundle g_bundle.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_bundle.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_bundle g_bundle.o .libs/gmx_bundle.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_bundle
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_confrms g_confrms.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_confrms.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_confrms g_confrms.o .libs/gmx_confrms.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_confrms
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_covar g_covar.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/eigensolver.o .libs/eigio.o .libs/gmx_covar.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_covar g_covar.o .libs/eigensolver.o .libs/eigio.o .libs/gmx_covar.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_covar
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_current g_current.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_current.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_current g_current.o .libs/gmx_current.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_current
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_density g_density.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_density.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_density g_density.o .libs/gmx_density.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_density
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_dih g_dih.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_dih.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_dih g_dih.o .libs/gmx_dih.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_dih
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_densmap g_densmap.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_densmap.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_densmap g_densmap.o .libs/gmx_densmap.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_densmap
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_dielectric g_dielectric.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/gmx_dielectric.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_dielectric g_dielectric.o .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/gmx_dielectric.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_dielectric
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_helixorient g_helixorient.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_helixorient.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_helixorient g_helixorient.o .libs/gmx_helixorient.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_helixorient
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_principal g_principal.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_principal.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_principal g_principal.o .libs/gmx_principal.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_principal
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_dipoles g_dipoles.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/lsq.o .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/gmx_dipoles.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_dipoles g_dipoles.o .libs/lsq.o .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/gmx_dipoles.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_dipoles
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_dyndom g_dyndom.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_dyndom.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_dyndom g_dyndom.o .libs/gmx_dyndom.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_dyndom
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_disre g_disre.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_disre.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_disre g_disre.o .libs/gmx_disre.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_disre
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_dist g_dist.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_dist.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_dist g_dist.o .libs/gmx_dist.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_dist
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_enemat g_enemat.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_enemat.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_enemat g_enemat.o .libs/gmx_enemat.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_enemat
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_lie g_lie.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_lie.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_lie g_lie.o .libs/gmx_lie.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_lie
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_energy g_energy.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/gmx_energy.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_energy g_energy.o .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/gmx_energy.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_energy
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_filter g_filter.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_filter.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_filter g_filter.o .libs/gmx_filter.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_filter
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_gyrate g_gyrate.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/gmx_gyrate.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_gyrate g_gyrate.o .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/gmx_gyrate.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_gyrate
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_h2order g_h2order.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_h2order.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_h2order g_h2order.o .libs/gmx_h2order.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_h2order
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_helix g_helix.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/hxprops.o .libs/fitahx.o .libs/gmx_helix.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_helix g_helix.o .libs/hxprops.o .libs/fitahx.o .libs/gmx_helix.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_helix
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_msd g_msd.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/lsq.o .libs/gmx_msd.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_msd g_msd.o .libs/lsq.o .libs/gmx_msd.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_msd
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_mindist g_mindist.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_mindist.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_mindist g_mindist.o .libs/gmx_mindist.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_mindist
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_morph g_morph.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_morph.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_morph g_morph.o .libs/gmx_morph.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_morph
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_hbond g_hbond.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_hbond.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_hbond g_hbond.o .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_hbond.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_hbond
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_nmeig g_nmeig.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/eigensolver.o .libs/eigio.o .libs/gmx_nmeig.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_nmeig g_nmeig.o .libs/eigensolver.o .libs/eigio.o .libs/gmx_nmeig.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_nmeig
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_nmens g_nmens.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/eigensolver.o .libs/eigio.o .libs/gmx_nmens.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_nmens g_nmens.o .libs/eigensolver.o .libs/eigio.o .libs/gmx_nmens.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_nmens
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_polystat g_polystat.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_polystat.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_polystat g_polystat.o .libs/gmx_polystat.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_polystat
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_rms g_rms.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/cmat.o .libs/gmx_rms.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_rms g_rms.o .libs/cmat.o .libs/gmx_rms.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_rms
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_order g_order.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_order.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_order g_order.o .libs/gmx_order.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_order
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_potential g_potential.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_potential.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_potential g_potential.o .libs/gmx_potential.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_potential
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_rama g_rama.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_rama.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_rama g_rama.o .libs/gmx_rama.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_rama
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_rdf g_rdf.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_rdf.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_rdf g_rdf.o .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_rdf.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_rdf
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_rmsdist g_rmsdist.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_rmsdist.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_rmsdist g_rmsdist.o .libs/gmx_rmsdist.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_rmsdist
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_rmsf g_rmsf.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/eigensolver.o .libs/gmx_rmsf.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_rmsf g_rmsf.o .libs/eigensolver.o .libs/gmx_rmsf.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_rmsf
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_rotacf g_rotacf.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_rotacf.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_rotacf g_rotacf.o .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_rotacf.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_rotacf
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_sham g_sham.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_sham.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_sham g_sham.o .libs/gmx_sham.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_sham
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_sgangle g_sgangle.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_sgangle.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_sgangle g_sgangle.o .libs/gmx_sgangle.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_sgangle
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_sas g_sas.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/nsc.o .libs/gmx_sas.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_sas g_sas.o .libs/nsc.o .libs/gmx_sas.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_sas
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_saltbr g_saltbr.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_saltbr.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_saltbr g_saltbr.o .libs/gmx_saltbr.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_saltbr
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_sorient g_sorient.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_sorient.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_sorient g_sorient.o .libs/gmx_sorient.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_sorient
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_spol g_spol.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_spol.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_spol g_spol.o .libs/gmx_spol.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_spol
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_sdf g_sdf.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_sdf.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_sdf g_sdf.o .libs/gmx_sdf.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_sdf
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_spatial g_spatial.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_spatial.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_spatial g_spatial.o .libs/gmx_spatial.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_spatial
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_traj g_traj.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_traj.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_traj g_traj.o .libs/gmx_traj.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_traj
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_tcaf g_tcaf.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_tcaf.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_tcaf g_tcaf.o .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_tcaf.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_tcaf
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_velacc g_velacc.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_velacc.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_velacc g_velacc.o .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_velacc.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_velacc
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_vanhove g_vanhove.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_vanhove.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_vanhove g_vanhove.o .libs/gmx_vanhove.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_vanhove
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_clustsize g_clustsize.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_clustsize.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_clustsize g_clustsize.o .libs/gmx_clustsize.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_clustsize
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_mdmat g_mdmat.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_mdmat.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_mdmat g_mdmat.o .libs/gmx_mdmat.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_mdmat
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_wham g_wham.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_wham.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_wham g_wham.o .libs/gmx_wham.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_wham
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o sigeps sigeps.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/sigeps sigeps.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating sigeps
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_kinetics g_kinetics.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_kinetics.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_kinetics g_kinetics.o .libs/gmx_kinetics.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_kinetics
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
Making all in ngmx
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o popup.o ../../../src/ngmx/popup.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o x11.o ../../../src/ngmx/x11.c
../../../src/ngmx/x11.c:265:13: warning: 'Xrm' defined but not used [-Wunused-function]
 static void Xrm(int *argc, char *argv[])
             ^~~
../../../src/ngmx/x11.c:132:13: warning: 'TestEvent' defined but not used [-Wunused-function]
 static Bool TestEvent(Display *disp,XEvent *event,char *arg)
             ^~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o xmb.o ../../../src/ngmx/xmb.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o ngmx.o ../../../src/ngmx/ngmx.c
../../../src/ngmx/ngmx.c: In function 'dump_xw':
../../../src/ngmx/ngmx.c:68:8: warning: variable 'rc' set but not used [-Wunused-but-set-variable]
   int  rc;
        ^~
../../../src/ngmx/ngmx.c: In function 'init_gmx':
../../../src/ngmx/ngmx.c:354:35: warning: unused variable 'nre' [-Wunused-variable]
   int                  step,natom,nre,natom_trx;
                                   ^~~
At top level:
../../../src/ngmx/ngmx.c:65:13: warning: 'dump_xw' defined but not used [-Wunused-function]
 static void dump_xw(char *dispname,Window w,char *fn)
             ^~~~~~~
In file included from ../../../src/ngmx/ngmx.c:52:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/ngmx/ngmx.c:49:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o xdlghi.o ../../../src/ngmx/xdlghi.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o xdlgitem.o ../../../src/ngmx/xdlgitem.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o pulldown.o ../../../src/ngmx/pulldown.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o xutil.o ../../../src/ngmx/xutil.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o fgrid.o ../../../src/ngmx/fgrid.c
../../../src/ngmx/fgrid.c: In function 'GetBuf':
../../../src/ngmx/fgrid.c:101:7: warning: variable 'rc' set but not used [-Wunused-but-set-variable]
   int rc;
       ^~
../../../src/ngmx/fgrid.c: In function 'FGridFromFile':
../../../src/ngmx/fgrid.c:346:8: warning: unused variable 'newinfile' [-Wunused-variable]
   char newinfile[STRLEN];
        ^~~~~~~~~
../../../src/ngmx/fgrid.c:345:9: warning: unused variable 'gmxlib' [-Wunused-variable]
   char *gmxlib;
         ^~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o logo.o ../../../src/ngmx/logo.c
In file included from ../../../src/ngmx/logo.c:45:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dialogs.o ../../../src/ngmx/dialogs.c
../../../src/ngmx/dialogs.c:373:13: warning: 'in_set' defined but not used [-Wunused-function]
 static bool in_set(int i,int n,int set[])
             ^~~~~~
../../../src/ngmx/dialogs.c:240:13: warning: 'Extract' defined but not used [-Wunused-function]
 static void Extract(t_dlg *dlg,int ID,char *buf)
             ^~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o xdlg.o ../../../src/ngmx/xdlg.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o manager.o ../../../src/ngmx/manager.c
../../../src/ngmx/manager.c: In function 'set_file':
../../../src/ngmx/manager.c:182:18: warning: unused variable 'idum' [-Wunused-variable]
   int          i,idum;
                  ^~~~
../../../src/ngmx/manager.c: In function 'step_man':
../../../src/ngmx/manager.c:312:15: warning: unused variable 'dum' [-Wunused-variable]
   int         dum;
               ^~~
../../../src/ngmx/manager.c:311:15: warning: unused variable 'rdum' [-Wunused-variable]
   real        rdum;
               ^~~~
In file included from ../../../src/ngmx/manager.c:57:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/ngmx/manager.c:56:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/ngmx/manager.c:55:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/ngmx/manager.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
../../../src/ngmx/manager.c: In function 'set_file':
../../../src/ngmx/manager.c:213:20: warning: '%s' directive writing up to 255 bytes into a region of size 254 [-Wformat-overflow=]
   sprintf(buf,"%s: %s",*man->top.name,quote);
                    ^~                 ~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/ngmx/manager.c:40:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 3 or more bytes (assuming 258) into a destination of size 256
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nleg.o ../../../src/ngmx/nleg.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o filter.o ../../../src/ngmx/filter.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o molps.o ../../../src/ngmx/molps.c
../../../src/ngmx/molps.c: In function 'ps_draw_mol':
../../../src/ngmx/molps.c:204:15: warning: unused variable 'ntime' [-Wunused-variable]
   static int  ntime=0;
               ^~~~~
../../../src/ngmx/molps.c:203:15: warning: unused variable 'tstr' [-Wunused-variable]
   static char tstr[2][20];
               ^~~~
At top level:
../../../src/ngmx/molps.c:203:15: warning: 'tstr' defined but not used [-Wunused-variable]
../../../src/ngmx/molps.c:204:15: warning: 'ntime' defined but not used [-Wunused-variable]
   static int  ntime=0;
               ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o buttons.o ../../../src/ngmx/buttons.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o xrama.o ../../../src/ngmx/xrama.c
../../../src/ngmx/xrama.c: In function 'main':
../../../src/ngmx/xrama.c:319:15: warning: variable 'ramatop' set but not used [-Wunused-but-set-variable]
   t_topology *ramatop;
               ^~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/ngmx/xrama.c:50:
At top level:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/ngmx/xrama.c:44:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o highway.o ../../../src/ngmx/highway.c
In file included from ../../../include/statutil.h:51,
                 from ../../../src/ngmx/highway.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/ngmx/highway.c:46:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nmol.o ../../../src/ngmx/nmol.c
../../../src/ngmx/nmol.c: In function 'draw_box':
../../../src/ngmx/nmol.c:422:23: warning: unused variable 'tv2' [-Wunused-variable]
   iv2  vec2[NCUCEDGE],tv2;
                       ^~~
In file included from ../../../src/ngmx/nmol.c:51:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/ngmx/nmol.c:51:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o xrama xrama.o xutil.o xmb.o x11.o xdlghi.o fgrid.o xdlgitem.o popup.o pulldown.o xdlg.o manager.o buttons.o nmol.o nleg.o dialogs.o logo.o filter.o molps.o ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -o .libs/xrama xrama.o xutil.o xmb.o x11.o xdlghi.o fgrid.o xdlgitem.o popup.o pulldown.o xdlg.o manager.o buttons.o nmol.o nleg.o dialogs.o logo.o filter.o molps.o  -lgslcblas ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath 
creating xrama
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o ngmx ngmx.o xutil.o xmb.o x11.o xdlghi.o fgrid.o xdlgitem.o popup.o pulldown.o xdlg.o manager.o buttons.o nmol.o nleg.o dialogs.o logo.o filter.o molps.o ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
mkdir .libs
mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -o .libs/ngmx ngmx.o xutil.o xmb.o x11.o xdlghi.o fgrid.o xdlgitem.o popup.o pulldown.o xdlg.o manager.o buttons.o nmol.o nleg.o dialogs.o logo.o filter.o molps.o  -lgslcblas ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath 
creating ngmx
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o highway highway.o xutil.o xmb.o x11.o xdlghi.o fgrid.o xdlgitem.o popup.o pulldown.o xdlg.o manager.o buttons.o nmol.o nleg.o dialogs.o logo.o filter.o molps.o ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -o .libs/highway highway.o xutil.o xmb.o x11.o xdlghi.o fgrid.o xdlgitem.o popup.o pulldown.o xdlg.o manager.o buttons.o nmol.o nleg.o dialogs.o logo.o filter.o molps.o  -lgslcblas ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath 
creating highway
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
Making all in contrib
make[3]: Nothing to be done for 'all'.
Making all in admin
make[1]: Nothing to be done for 'all'.
Making all in scripts
make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/scripts'
cat ../../scripts/GMXRC.in | sed 's,@bindir\@,/usr/bin,' > GMXRC
make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/scripts'
make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/scripts'
cat ../../scripts/GMXRC.csh.in | sed 's,@libdir\@,/usr/lib,' | \
sed 's,@bindir\@,/usr/bin,' | \
sed 's,@datadir\@,/usr/share,' | \
sed 's,@mandir\@,/usr/share/man,'  > GMXRC.csh
make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/scripts'
make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/scripts'
cat ../../scripts/GMXRC.bash.in | sed 's,@libdir\@,/usr/lib,' | \
sed 's,@bindir\@,/usr/bin,' | \
sed 's,@datadir\@,/usr/share,' | \
sed 's,@mandir\@,/usr/share/man,'  > GMXRC.bash
make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/scripts'
make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/scripts'
cat ../../scripts/GMXRC.zsh.in | sed 's,@libdir\@,/usr/lib,' | \
sed 's,@bindir\@,/usr/bin,' | \
sed 's,@datadir\@,/usr/share,' | \
sed 's,@mandir\@,/usr/share/man,'  > GMXRC.zsh
make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/scripts'
Making all in share
Making all in top
make[2]: Nothing to be done for 'all'.
Making all in tutor
Making all in nmr1
make[3]: Nothing to be done for 'all'.
Making all in nmr2
make[3]: Nothing to be done for 'all'.
Making all in speptide
make[3]: Nothing to be done for 'all'.
Making all in water
make[3]: Nothing to be done for 'all'.
Making all in gmxdemo
make[3]: Nothing to be done for 'all'.
Making all in methanol
make[3]: Nothing to be done for 'all'.
Making all in mixed
make[3]: Nothing to be done for 'all'.
make[3]: Nothing to be done for 'all-am'.
Making all in template
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/template'
cat ../../../share/template/Template.mak | \
sed 's,@LDFLAGS\@,-L/usr/lib  -lgslcblas ,' | \
sed 's,@LIBS\@,-lmd_mpi -lgmx_mpi -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath ,' | \
sed 's,@CFLAGS\@,-g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack   -I/usr/include -I/usr/include/gromacs,' | \
sed 's,@CC\@,mpicc,' | \
sed 's,@host\@,i586-alt-linux-gnu,' >Makefile.i586-alt-linux-gnu
sed: -e expression #1, char 36: unknown option to `s'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/template'
Making all in html
Making all in .
make[3]: Nothing to be done for 'all-am'.
Making all in images
make[3]: Nothing to be done for 'all'.
Making all in online
make[3]: Nothing to be done for 'all'.
make[2]: Nothing to be done for 'all-am'.
Making all in man
Making all in man1
make[2]: Nothing to be done for 'all'.
make[2]: Nothing to be done for 'all-am'.
make[1]: Nothing to be done for 'all-am'.
+ popd
~/RPM/BUILD/gromacs-4.0.7
+ mkdir mpi-double
+ pushd mpi-double
~/RPM/BUILD/gromacs-4.0.7/mpi-double ~/RPM/BUILD/gromacs-4.0.7
+ buildThis double enable _mpi_d
+ ln -s ../configure .
+ CFLAGS='-pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic'
+ export CFLAGS
+ CXXFLAGS='-pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic'
+ export CXXFLAGS
+ FFLAGS='-pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic'
+ export FFLAGS
+ '[' -n ' -march=i586 -mtune=generic' ']'
+ export ASFLAGS
+ export lt_cv_prog_cc_static_works=no
+ lt_cv_prog_cc_static_works=no
+ export lt_cv_deplibs_check_method=pass_all
+ lt_cv_deplibs_check_method=pass_all
+ readlink -e -- ./configure
+ xargs -ri dirname -- '{}'
+ xargs -ri find '{}' -type f '(' -name config.sub -or -name config.guess ')' -printf '%h/\n'
+ xargs -rn1 install -pm755 -- /usr/share/gnu-config/config.sub /usr/share/gnu-config/config.guess
+ sort -u
+ ./configure --build=i586-alt-linux --host=i586-alt-linux --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib --libexecdir=/usr/lib --localstatedir=/var/lib --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info --disable-dependency-tracking --disable-silent-rules --without-included-gettext --disable-rpath --enable-static=no --enable-shared --enable-double --enable-mpi --enable-prefetch-forces --enable-fortran --with-gnu-ld --with-fft=fftw3 --with-x --with-gsl --enable-mpi --program-suffix=_mpi_d --with-external-blas=-lopenblas
configure: WARNING: unrecognized options: --without-included-gettext, --disable-rpath, --enable-prefetch-forces
checking build system type... i586-alt-linux-gnu
checking host system type... i586-alt-linux-gnu
checking for a BSD-compatible install... /bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking whether UID '526' is supported by ustar format... yes
checking whether GID '526' is supported by ustar format... yes
checking how to create a ustar tar archive... gnutar
checking for i586-alt-linux-cc... no
checking for i586-alt-linux-icc... no
checking for i586-alt-linux-xlc... no
checking for i586-alt-linux-gcc... i586-alt-linux-gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether i586-alt-linux-gcc accepts -g... yes
checking for i586-alt-linux-gcc option to accept ISO C89... none needed
checking whether i586-alt-linux-gcc understands -c and -o together... yes
checking whether make supports the include directive... yes (GNU style)
checking dependency style of i586-alt-linux-gcc... none
checking for i586-alt-linux-f77... no
checking for i586-alt-linux-ifort... no
checking for i586-alt-linux-xlf... no
checking for i586-alt-linux-xlf77... no
checking for i586-alt-linux-cf77... no
checking for i586-alt-linux-fl32... no
checking for i586-alt-linux-g77... no
checking for i586-alt-linux-fort77... no
checking for i586-alt-linux-f90... no
checking for i586-alt-linux-xlf90... no
checking for i586-alt-linux-pgf77... no
checking for i586-alt-linux-cf77... no
checking for i586-alt-linux-fort... no
checking for i586-alt-linux-fort77... no
checking for i586-alt-linux-pgf90... no
checking for f77... f77
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether f77 accepts -g... yes
checking dependency style of i586-alt-linux-gcc... none
checking for mpxlc... no
checking for mpicc... mpicc
checking whether the MPI cc command works... yes
checking for catamount... no
checking how to get verbose linking output from f77... -v
checking for Fortran 77 libraries of f77...  -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
checking for dummy main to link with Fortran 77 libraries... none
checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore
checking how to run the C preprocessor... mpicc -E
checking whether mpicc accepts -O3... yes
checking whether mpicc accepts -funroll-all-loops... yes
******************************************
* Using CFLAGS from environment variable *
******************************************
******************************************
* Using FFLAGS from environment variable *
******************************************
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking whether byte ordering is bigendian... no
checking size of int... 4
checking size of long int... 4
checking size of long long int... 8
checking size of off_t... 4
checking that size_t can hold pointers... yes
checking floating-point format... IEEE754 (little-endian byte and word order)
checking whether ln -s works... yes
checking whether make sets $(MAKE)... (cached) yes
checking for a sed that does not truncate output... /bin/sed
checking for ld used by mpicc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for /usr/bin/ld option to reload object files... -r
checking for BSD-compatible nm... /usr/bin/nm -B
checking how to recognise dependent libraries... (cached) pass_all
checking dlfcn.h usability... yes
checking dlfcn.h presence... yes
checking for dlfcn.h... yes
checking for i586-alt-linux-g++... i586-alt-linux-g++
checking whether we are using the GNU C++ compiler... yes
checking whether i586-alt-linux-g++ accepts -g... yes
checking dependency style of i586-alt-linux-g++... none
checking how to run the C++ preprocessor... i586-alt-linux-g++ -E
checking the maximum length of command line arguments... 32768
checking command to parse /usr/bin/nm -B output from mpicc object... ok
checking for objdir... .libs
checking for i586-alt-linux-ar... no
checking for ar... ar
checking for i586-alt-linux-ranlib... no
checking for ranlib... ranlib
checking for i586-alt-linux-strip... no
checking for strip... strip
checking if mpicc supports -fno-rtti -fno-exceptions... no
checking for mpicc option to produce PIC... -fPIC
checking if mpicc PIC flag -fPIC works... yes
checking if mpicc static flag -static works... no
checking if mpicc supports -c -o file.o... yes
checking whether the mpicc linker (/usr/bin/ld) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... cat: '/etc/ld.so.conf.d/*.conf': No such file or directory
GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
configure: creating libtool
appending configuration tag "CXX" to libtool
checking for ld used by i586-alt-linux-g++... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking whether the i586-alt-linux-g++ linker (/usr/bin/ld) supports shared libraries... yes
checking for i586-alt-linux-g++ option to produce PIC... -fPIC
checking if i586-alt-linux-g++ PIC flag -fPIC works... yes
checking if i586-alt-linux-g++ static flag -static works... no
checking if i586-alt-linux-g++ supports -c -o file.o... yes
checking whether the i586-alt-linux-g++ linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... cat: '/etc/ld.so.conf.d/*.conf': No such file or directory
GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
appending configuration tag "F77" to libtool
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking for f77 option to produce PIC... -fPIC
checking if f77 PIC flag -fPIC works... yes
checking if f77 static flag -static works... no
checking if f77 supports -c -o file.o... yes
checking whether the f77 linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... cat: '/etc/ld.so.conf.d/*.conf': No such file or directory
GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... 64
checking for _LARGEFILE_SOURCE value needed for large files... no
checking for sqrt in -lm... yes
checking for fftw3.h... yes
checking for main in -lfftw3... yes
checking rpc/rpc.h usability... yes
checking rpc/rpc.h presence... yes
checking for rpc/rpc.h... yes
checking for rpc/xdr.h... yes
checking for xdr_float in -lnsl... no
checking for working memcmp... yes
checking return type of signal handlers... void
checking for off_t... yes
checking for vprintf... yes
checking for _doprnt... no
checking if malloc debugging is wanted... no
checking for strcasecmp... yes
checking for strdup... yes
checking for bool... no
checking size of int... (cached) 4
checking size of long int... (cached) 4
checking size of long long int... (cached) 8
checking size of off_t... (cached) 4
checking size of void*... 4
checking for X... libraries , headers 
checking for gethostbyname... yes
checking for connect... yes
checking for remove... yes
checking for shmat... yes
checking for IceConnectionNumber in -lICE... yes
checking gsl/gsl_version.h usability... yes
checking gsl/gsl_version.h presence... yes
checking for gsl/gsl_version.h... yes
checking for main in -lgslcblas... yes
checking for main in -lgsl... yes
checking libxml/parser.h usability... no
checking libxml/parser.h presence... no
checking for libxml/parser.h... no
checking limits.h usability... yes
checking limits.h presence... yes
checking for limits.h... yes
checking for strings.h... (cached) yes
checking for unistd.h... (cached) yes
checking for unistd.h... (cached) yes
checking for an ANSI C-conforming const... yes
checking for size_t... yes
checking whether struct tm is in sys/time.h or time.h... time.h
checking for uid_t in sys/types.h... yes
checking for inline... inline
checking whether your compiler can handle assembly files (*.s)... yes
checking whether as fully supports ia32 SSE2... yes
checking whether byte ordering is bigendian... (cached) no
checking if the compiler supports gcc inline assembly... yes
checking if the compiler supports MSVC inline assembly... no
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating src/gmxlib/Makefile
config.status: creating src/gmxlib/gmx_blas/Makefile
config.status: creating src/gmxlib/gmx_lapack/Makefile
config.status: creating src/gmxlib/nonbonded/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_ia32_sse/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_ia32_sse2/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_x86_64_sse/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_ppc_altivec/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_ia64_single/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_ia64_double/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_bluegene/Makefile
config.status: creating include/Makefile
config.status: creating include/types/Makefile
config.status: creating src/mdlib/Makefile
config.status: creating src/kernel/Makefile
config.status: creating src/tools/Makefile
config.status: creating src/ngmx/Makefile
config.status: creating src/contrib/Makefile
config.status: creating scripts/Makefile
config.status: creating admin/Makefile
config.status: creating share/Makefile
config.status: creating share/tutor/Makefile
config.status: creating share/tutor/gmxdemo/Makefile
config.status: creating share/tutor/nmr1/Makefile
config.status: creating share/tutor/nmr2/Makefile
config.status: creating share/tutor/water/Makefile
config.status: creating share/tutor/mixed/Makefile
config.status: creating share/tutor/methanol/Makefile
config.status: creating share/tutor/speptide/Makefile
config.status: creating share/template/Makefile
config.status: creating share/top/Makefile
config.status: creating share/html/Makefile
config.status: creating share/html/images/Makefile
config.status: creating share/html/online/Makefile
config.status: creating man/Makefile
config.status: creating man/man1/Makefile
config.status: creating src/config.h
config.status: executing depfiles commands
configure: WARNING: unrecognized options: --without-included-gettext, --disable-rpath, --enable-prefetch-forces

+ sed -i 's|^hardcode_libdir_flag_spec=.*|hardcode_libdir_flag_spec=""|g' libtool
+ sed -i 's|^runpath_var=LD_RUN_PATH|runpath_var=DIE_RPATH_DIE|g' libtool
+ make -j8
Making all in include
Making all in .
make[2]: Nothing to be done for 'all-am'.
Making all in types
make[2]: Nothing to be done for 'all'.
Making all in src
make  all-recursive
Making all in gmxlib
Making all in nonbonded
Making all in nb_kernel_ia32_sse2
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_ia32_sse2'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel030_ia32_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel030_ia32_sse2.s
mkdir .libs
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel030_ia32_sse2.s  -fPIC -DPIC -o .libs/nb_kernel030_ia32_sse2.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_ia32_sse2'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_ia32_sse2'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel103_ia32_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel103_ia32_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel103_ia32_sse2.s  -fPIC -DPIC -o .libs/nb_kernel103_ia32_sse2.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_ia32_sse2'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_ia32_sse2'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel102_ia32_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel102_ia32_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel102_ia32_sse2.s  -fPIC -DPIC -o .libs/nb_kernel102_ia32_sse2.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_ia32_sse2'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_ia32_sse2'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel010_ia32_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel010_ia32_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel010_ia32_sse2.s  -fPIC -DPIC -o .libs/nb_kernel010_ia32_sse2.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_ia32_sse2'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_ia32_sse2'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel110_ia32_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel110_ia32_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel110_ia32_sse2.s  -fPIC -DPIC -o .libs/nb_kernel110_ia32_sse2.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_ia32_sse2'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_ia32_sse2'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel100_ia32_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel100_ia32_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel100_ia32_sse2.s  -fPIC -DPIC -o .libs/nb_kernel100_ia32_sse2.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_ia32_sse2'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_ia32_sse2'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel101_ia32_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel101_ia32_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel101_ia32_sse2.s  -fPIC -DPIC -o .libs/nb_kernel101_ia32_sse2.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_ia32_sse2'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_ia32_sse2'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel104_ia32_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel104_ia32_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel104_ia32_sse2.s  -fPIC -DPIC -o .libs/nb_kernel104_ia32_sse2.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_ia32_sse2'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_ia32_sse2'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel111_ia32_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel111_ia32_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel111_ia32_sse2.s  -fPIC -DPIC -o .libs/nb_kernel111_ia32_sse2.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_ia32_sse2'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_ia32_sse2'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel113_ia32_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel113_ia32_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel113_ia32_sse2.s  -fPIC -DPIC -o .libs/nb_kernel113_ia32_sse2.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_ia32_sse2'
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/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel132_ia32_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel132_ia32_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel132_ia32_sse2.s  -fPIC -DPIC -o .libs/nb_kernel132_ia32_sse2.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_ia32_sse2'
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/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel112_ia32_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel112_ia32_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel112_ia32_sse2.s  -fPIC -DPIC -o .libs/nb_kernel112_ia32_sse2.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_ia32_sse2'
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/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel130_ia32_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel130_ia32_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel130_ia32_sse2.s  -fPIC -DPIC -o .libs/nb_kernel130_ia32_sse2.o
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/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel131_ia32_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel131_ia32_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel131_ia32_sse2.s  -fPIC -DPIC -o .libs/nb_kernel131_ia32_sse2.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_ia32_sse2'
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/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel114_ia32_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel114_ia32_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel114_ia32_sse2.s  -fPIC -DPIC -o .libs/nb_kernel114_ia32_sse2.o
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/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel133_ia32_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel133_ia32_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel133_ia32_sse2.s  -fPIC -DPIC -o .libs/nb_kernel133_ia32_sse2.o
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/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel134_ia32_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel134_ia32_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel134_ia32_sse2.s  -fPIC -DPIC -o .libs/nb_kernel134_ia32_sse2.o
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/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel200_ia32_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel200_ia32_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel200_ia32_sse2.s  -fPIC -DPIC -o .libs/nb_kernel200_ia32_sse2.o
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/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel202_ia32_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel202_ia32_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel202_ia32_sse2.s  -fPIC -DPIC -o .libs/nb_kernel202_ia32_sse2.o
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/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel201_ia32_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel201_ia32_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel201_ia32_sse2.s  -fPIC -DPIC -o .libs/nb_kernel201_ia32_sse2.o
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/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel210_ia32_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel210_ia32_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel210_ia32_sse2.s  -fPIC -DPIC -o .libs/nb_kernel210_ia32_sse2.o
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/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel203_ia32_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel203_ia32_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel203_ia32_sse2.s  -fPIC -DPIC -o .libs/nb_kernel203_ia32_sse2.o
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/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel211_ia32_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel211_ia32_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel211_ia32_sse2.s  -fPIC -DPIC -o .libs/nb_kernel211_ia32_sse2.o
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/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel204_ia32_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel204_ia32_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel204_ia32_sse2.s  -fPIC -DPIC -o .libs/nb_kernel204_ia32_sse2.o
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/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel214_ia32_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel214_ia32_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel214_ia32_sse2.s  -fPIC -DPIC -o .libs/nb_kernel214_ia32_sse2.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_ia32_sse2'
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/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel213_ia32_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel213_ia32_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel213_ia32_sse2.s  -fPIC -DPIC -o .libs/nb_kernel213_ia32_sse2.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_ia32_sse2'
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/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel212_ia32_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel212_ia32_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel212_ia32_sse2.s  -fPIC -DPIC -o .libs/nb_kernel212_ia32_sse2.o
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/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel230_ia32_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel230_ia32_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel230_ia32_sse2.s  -fPIC -DPIC -o .libs/nb_kernel230_ia32_sse2.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_ia32_sse2'
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/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel231_ia32_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel231_ia32_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel231_ia32_sse2.s  -fPIC -DPIC -o .libs/nb_kernel231_ia32_sse2.o
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/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel232_ia32_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel232_ia32_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel232_ia32_sse2.s  -fPIC -DPIC -o .libs/nb_kernel232_ia32_sse2.o
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/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel233_ia32_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel233_ia32_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel233_ia32_sse2.s  -fPIC -DPIC -o .libs/nb_kernel233_ia32_sse2.o
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/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel234_ia32_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel234_ia32_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel234_ia32_sse2.s  -fPIC -DPIC -o .libs/nb_kernel234_ia32_sse2.o
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/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel301_ia32_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel301_ia32_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel301_ia32_sse2.s  -fPIC -DPIC -o .libs/nb_kernel301_ia32_sse2.o
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/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel300_ia32_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel300_ia32_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel300_ia32_sse2.s  -fPIC -DPIC -o .libs/nb_kernel300_ia32_sse2.o
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/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel303_ia32_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel303_ia32_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel303_ia32_sse2.s  -fPIC -DPIC -o .libs/nb_kernel303_ia32_sse2.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_ia32_sse2'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_ia32_sse2'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel304_ia32_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel304_ia32_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel304_ia32_sse2.s  -fPIC -DPIC -o .libs/nb_kernel304_ia32_sse2.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_ia32_sse2'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_ia32_sse2'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel302_ia32_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel302_ia32_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel302_ia32_sse2.s  -fPIC -DPIC -o .libs/nb_kernel302_ia32_sse2.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_ia32_sse2'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_ia32_sse2'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel310_ia32_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel310_ia32_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel310_ia32_sse2.s  -fPIC -DPIC -o .libs/nb_kernel310_ia32_sse2.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_ia32_sse2'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_ia32_sse2'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel312_ia32_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel312_ia32_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel312_ia32_sse2.s  -fPIC -DPIC -o .libs/nb_kernel312_ia32_sse2.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_ia32_sse2'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_ia32_sse2'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel313_ia32_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel313_ia32_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel313_ia32_sse2.s  -fPIC -DPIC -o .libs/nb_kernel313_ia32_sse2.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_ia32_sse2'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_ia32_sse2'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel311_ia32_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel311_ia32_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel311_ia32_sse2.s  -fPIC -DPIC -o .libs/nb_kernel311_ia32_sse2.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_ia32_sse2'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_ia32_sse2'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel330_ia32_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel330_ia32_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel330_ia32_sse2.s  -fPIC -DPIC -o .libs/nb_kernel330_ia32_sse2.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_ia32_sse2'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_ia32_sse2'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel333_ia32_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel333_ia32_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel333_ia32_sse2.s  -fPIC -DPIC -o .libs/nb_kernel333_ia32_sse2.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_ia32_sse2'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_ia32_sse2'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel332_ia32_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel332_ia32_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel332_ia32_sse2.s  -fPIC -DPIC -o .libs/nb_kernel332_ia32_sse2.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_ia32_sse2'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_ia32_sse2'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel331_ia32_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel331_ia32_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel331_ia32_sse2.s  -fPIC -DPIC -o .libs/nb_kernel331_ia32_sse2.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_ia32_sse2'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_ia32_sse2'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel314_ia32_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel314_ia32_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel314_ia32_sse2.s  -fPIC -DPIC -o .libs/nb_kernel314_ia32_sse2.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_ia32_sse2'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_ia32_sse2'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel334_ia32_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel334_ia32_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel334_ia32_sse2.s  -fPIC -DPIC -o .libs/nb_kernel334_ia32_sse2.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_ia32_sse2'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_ia32_sse2'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel410_ia32_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel410_ia32_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel410_ia32_sse2.s  -fPIC -DPIC -o .libs/nb_kernel410_ia32_sse2.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_ia32_sse2'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_ia32_sse2'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel400_ia32_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel400_ia32_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel400_ia32_sse2.s  -fPIC -DPIC -o .libs/nb_kernel400_ia32_sse2.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_ia32_sse2'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_ia32_sse2'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel430_ia32_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel430_ia32_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel430_ia32_sse2.s  -fPIC -DPIC -o .libs/nb_kernel430_ia32_sse2.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_ia32_sse2'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_ia32_sse2'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel_ia32_sse2_test_asm.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel_ia32_sse2_test_asm.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel_ia32_sse2_test_asm.s  -fPIC -DPIC -o .libs/nb_kernel_ia32_sse2_test_asm.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_ia32_sse2'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_ia32_sse2'
/bin/sh ../../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2 -I../../../../src  -I../../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel_ia32_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel_ia32_sse2.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2 -I../../../../src -I../../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel_ia32_sse2.c  -fPIC -DPIC -o .libs/nb_kernel_ia32_sse2.o
../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel_ia32_sse2.c: In function 'nb_kernel_ia32_sse2_test':
../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel_ia32_sse2.c:207:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
     if(log)
     ^~
../../../../../src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel_ia32_sse2.c:210:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
  nb_kernel_ia32_sse2_present = TRUE;
  ^~~~~~~~~~~~~~~~~~~~~~~~~~~
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_ia32_sse2'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_ia32_sse2'
/bin/sh ../../../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o libnb_kernel_ia32_sse2.la  nb_kernel010_ia32_sse2.lo nb_kernel030_ia32_sse2.lo nb_kernel100_ia32_sse2.lo nb_kernel101_ia32_sse2.lo nb_kernel102_ia32_sse2.lo nb_kernel103_ia32_sse2.lo nb_kernel104_ia32_sse2.lo nb_kernel110_ia32_sse2.lo nb_kernel111_ia32_sse2.lo nb_kernel112_ia32_sse2.lo nb_kernel113_ia32_sse2.lo nb_kernel114_ia32_sse2.lo nb_kernel130_ia32_sse2.lo nb_kernel131_ia32_sse2.lo nb_kernel132_ia32_sse2.lo nb_kernel133_ia32_sse2.lo nb_kernel134_ia32_sse2.lo nb_kernel200_ia32_sse2.lo nb_kernel201_ia32_sse2.lo nb_kernel202_ia32_sse2.lo nb_kernel203_ia32_sse2.lo nb_kernel204_ia32_sse2.lo nb_kernel210_ia32_sse2.lo nb_kernel211_ia32_sse2.lo nb_kernel212_ia32_sse2.lo nb_kernel213_ia32_sse2.lo nb_kernel214_ia32_sse2.lo nb_kernel230_ia32_sse2.lo nb_kernel231_ia32_sse2.lo nb_kernel232_ia32_sse2.lo nb_kernel233_ia32_sse2.lo nb_kernel234_ia32_sse2.lo nb_kernel300_ia32_sse2.lo nb_kernel301_ia32_sse2.lo nb_kernel302_ia32_sse2.lo nb_kernel303_ia32_sse2.lo nb_kernel304_ia32_sse2.lo nb_kernel310_ia32_sse2.lo nb_kernel311_ia32_sse2.lo nb_kernel312_ia32_sse2.lo nb_kernel313_ia32_sse2.lo nb_kernel314_ia32_sse2.lo nb_kernel330_ia32_sse2.lo nb_kernel331_ia32_sse2.lo nb_kernel332_ia32_sse2.lo nb_kernel333_ia32_sse2.lo nb_kernel334_ia32_sse2.lo nb_kernel400_ia32_sse2.lo nb_kernel410_ia32_sse2.lo nb_kernel430_ia32_sse2.lo nb_kernel_ia32_sse2_test_asm.lo nb_kernel_ia32_sse2.lo  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
ar cru .libs/libnb_kernel_ia32_sse2.a .libs/nb_kernel010_ia32_sse2.o .libs/nb_kernel030_ia32_sse2.o .libs/nb_kernel100_ia32_sse2.o .libs/nb_kernel101_ia32_sse2.o .libs/nb_kernel102_ia32_sse2.o .libs/nb_kernel103_ia32_sse2.o .libs/nb_kernel104_ia32_sse2.o .libs/nb_kernel110_ia32_sse2.o .libs/nb_kernel111_ia32_sse2.o .libs/nb_kernel112_ia32_sse2.o .libs/nb_kernel113_ia32_sse2.o .libs/nb_kernel114_ia32_sse2.o .libs/nb_kernel130_ia32_sse2.o .libs/nb_kernel131_ia32_sse2.o .libs/nb_kernel132_ia32_sse2.o .libs/nb_kernel133_ia32_sse2.o .libs/nb_kernel134_ia32_sse2.o .libs/nb_kernel200_ia32_sse2.o .libs/nb_kernel201_ia32_sse2.o .libs/nb_kernel202_ia32_sse2.o .libs/nb_kernel203_ia32_sse2.o .libs/nb_kernel204_ia32_sse2.o .libs/nb_kernel210_ia32_sse2.o .libs/nb_kernel211_ia32_sse2.o .libs/nb_kernel212_ia32_sse2.o .libs/nb_kernel213_ia32_sse2.o .libs/nb_kernel214_ia32_sse2.o .libs/nb_kernel230_ia32_sse2.o .libs/nb_kernel231_ia32_sse2.o .libs/nb_kernel232_ia32_sse2.o .libs/nb_kernel233_ia32_sse2.o .libs/nb_kernel234_ia32_sse2.o .libs/nb_kernel300_ia32_sse2.o .libs/nb_kernel301_ia32_sse2.o .libs/nb_kernel302_ia32_sse2.o .libs/nb_kernel303_ia32_sse2.o .libs/nb_kernel304_ia32_sse2.o .libs/nb_kernel310_ia32_sse2.o .libs/nb_kernel311_ia32_sse2.o .libs/nb_kernel312_ia32_sse2.o .libs/nb_kernel313_ia32_sse2.o .libs/nb_kernel314_ia32_sse2.o .libs/nb_kernel330_ia32_sse2.o .libs/nb_kernel331_ia32_sse2.o .libs/nb_kernel332_ia32_sse2.o .libs/nb_kernel333_ia32_sse2.o .libs/nb_kernel334_ia32_sse2.o .libs/nb_kernel400_ia32_sse2.o .libs/nb_kernel410_ia32_sse2.o .libs/nb_kernel430_ia32_sse2.o .libs/nb_kernel_ia32_sse2_test_asm.o .libs/nb_kernel_ia32_sse2.o
ranlib .libs/libnb_kernel_ia32_sse2.a
creating libnb_kernel_ia32_sse2.la
(cd .libs && rm -f libnb_kernel_ia32_sse2.la && ln -s ../libnb_kernel_ia32_sse2.la libnb_kernel_ia32_sse2.la)
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_ia32_sse2'
Making all in nb_kernel
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb_common.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb_common.c
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb.c
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb_declarations.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb_declarations.c
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb_innerloop.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb_innerloop.c
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb_outerloop.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb_outerloop.c
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb_interactions.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb_interactions.c
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb_metacode.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb_metacode.c
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -o mknb mknb.o mknb_metacode.o mknb_common.o mknb_declarations.o mknb_outerloop.o mknb_innerloop.o mknb_interactions.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
rm -f kernel-stamp
./mknb -double -software_invsqrt   -fortran
>>> Gromacs nonbonded kernel generator (-h for help)
>>> Generating double precision functions in Fortran77.
>>> Using Gromacs software version of 1/sqrt(x).

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make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make  all-am
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel030_f.lo nb_kernel030_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel030_f.f  -fPIC -o .libs/nb_kernel030_f.o
nb_kernel030_f.f:132:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel030_f.f:146:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel030_f.f:310:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel030_f.f:324:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel030_f.f:36:38:

      &                          charge,
                                      1
Warning: Unused dummy argument 'charge' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:37:37:

      &                          facel,
                                     1
Warning: Unused dummy argument 'facel' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:40:34:

      &                          Vc,
                                  1
Warning: Unused dummy argument 'vc' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:220:38:

      &                          charge,
                                      1
Warning: Unused dummy argument 'charge' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:236:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:223:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:232:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:221:37:

      &                          facel,
                                     1
Warning: Unused dummy argument 'facel' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:219:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:216:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:234:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:233:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:231:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:222:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:237:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:235:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:224:34:

      &                          Vc,
                                  1
Warning: Unused dummy argument 'vc' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:240:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src  -I../../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel.lo ../../../../../src/gmxlib/nonbonded/nb_kernel/nb_kernel.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -I../../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel/nb_kernel.c  -fPIC -DPIC -o .libs/nb_kernel.o
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel103_f.lo nb_kernel103_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel103_f.f  -fPIC -o .libs/nb_kernel103_f.o
nb_kernel103_f.f:153:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel103_f.f:162:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel103_f.f:171:29:

           fval             = rsq41
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel103_f.f:374:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel103_f.f:383:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel103_f.f:392:29:

           fval             = rsq41
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel103_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:284:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:271:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:280:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:267:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:264:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:282:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:281:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:279:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:270:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:285:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:283:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:274:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:277:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:273:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:275:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:278:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:276:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:288:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel100_f.lo nb_kernel100_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel100_f.f  -fPIC -o .libs/nb_kernel100_f.o
nb_kernel100_f.f:125:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel100_f.f:272:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel100_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:204:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:191:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:200:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:187:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:184:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:202:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:201:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:199:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:190:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:205:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:203:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:194:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:197:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:193:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:195:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:198:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:196:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:208:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel010_f.lo nb_kernel010_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel010_f.f  -fPIC -o .libs/nb_kernel010_f.o
nb_kernel010_f.f:36:38:

      &                          charge,
                                      1
Warning: Unused dummy argument 'charge' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:37:37:

      &                          facel,
                                     1
Warning: Unused dummy argument 'facel' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:40:34:

      &                          Vc,
                                  1
Warning: Unused dummy argument 'vc' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:169:38:

      &                          charge,
                                      1
Warning: Unused dummy argument 'charge' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:185:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:172:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:181:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:170:37:

      &                          facel,
                                     1
Warning: Unused dummy argument 'facel' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:168:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:165:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:183:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:182:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:180:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:171:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:186:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:184:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:178:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:173:34:

      &                          Vc,
                                  1
Warning: Unused dummy argument 'vc' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:179:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:189:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel101_f.lo nb_kernel101_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel101_f.f  -fPIC -o .libs/nb_kernel101_f.o
nb_kernel101_f.f:153:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel101_f.f:162:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel101_f.f:171:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel101_f.f:374:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel101_f.f:383:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel101_f.f:392:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel101_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:284:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:271:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:280:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:267:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:264:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:282:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:281:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:279:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:270:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:285:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:283:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:274:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:277:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:273:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:275:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:278:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:276:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:288:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel020_f.lo nb_kernel020_f.f
mkdir .libs
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel020_f.f  -fPIC -o .libs/nb_kernel020_f.o
nb_kernel020_f.f:129:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel020_f.f:287:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel020_f.f:36:38:

      &                          charge,
                                      1
Warning: Unused dummy argument 'charge' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:37:37:

      &                          facel,
                                     1
Warning: Unused dummy argument 'facel' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:40:34:

      &                          Vc,
                                  1
Warning: Unused dummy argument 'vc' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:198:38:

      &                          charge,
                                      1
Warning: Unused dummy argument 'charge' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:214:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:201:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:210:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:199:37:

      &                          facel,
                                     1
Warning: Unused dummy argument 'facel' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:197:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:194:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:212:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:211:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:209:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:200:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:215:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:213:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:207:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:202:34:

      &                          Vc,
                                  1
Warning: Unused dummy argument 'vc' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:208:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:218:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel110_f.lo nb_kernel110_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel110_f.f  -fPIC -o .libs/nb_kernel110_f.o
nb_kernel110_f.f:133:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel110_f.f:297:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel110_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:220:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:207:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:216:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:203:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:200:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:218:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:217:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:215:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:206:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:221:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:219:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:213:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:214:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:224:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel102_f.lo nb_kernel102_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel102_f.f  -fPIC -o .libs/nb_kernel102_f.o
nb_kernel102_f.f:193:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel102_f.f:202:29:

           fval             = rsq12
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel102_f.f:211:29:

           fval             = rsq13
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel102_f.f:220:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel102_f.f:229:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel102_f.f:238:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel102_f.f:247:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel102_f.f:256:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel102_f.f:265:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel102_f.f:592:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel102_f.f:601:29:

           fval             = rsq12
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel102_f.f:610:29:

           fval             = rsq13
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel102_f.f:619:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel102_f.f:628:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel102_f.f:637:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel102_f.f:646:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel102_f.f:655:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel102_f.f:664:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel102_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:462:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:449:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:458:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:445:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:442:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:460:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:459:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:457:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:448:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:463:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:461:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:452:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:455:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:451:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:453:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:456:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:454:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:466:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel113_f.lo nb_kernel113_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel113_f.f  -fPIC -o .libs/nb_kernel113_f.o
nb_kernel113_f.f:174:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel113_f.f:183:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel113_f.f:192:29:

           fval             = rsq41
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel113_f.f:435:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel113_f.f:444:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel113_f.f:453:29:

           fval             = rsq41
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel113_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:326:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:313:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:322:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:309:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:306:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:324:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:323:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:321:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:312:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:327:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:325:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:319:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:320:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:330:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel111_f.lo nb_kernel111_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel111_f.f  -fPIC -o .libs/nb_kernel111_f.o
nb_kernel111_f.f:161:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel111_f.f:170:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel111_f.f:179:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel111_f.f:399:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel111_f.f:408:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel111_f.f:417:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel111_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:300:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:287:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:296:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:283:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:280:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:298:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:297:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:295:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:286:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:301:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:299:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:293:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:294:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:304:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel121_f.lo nb_kernel121_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel121_f.f  -fPIC -o .libs/nb_kernel121_f.o
nb_kernel121_f.f:161:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel121_f.f:170:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel121_f.f:179:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel121_f.f:401:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel121_f.f:410:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel121_f.f:419:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel121_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:302:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:289:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:298:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:285:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:282:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:300:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:299:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:297:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:288:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:303:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:301:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:295:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:296:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:306:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel120_f.lo nb_kernel120_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel120_f.f  -fPIC -o .libs/nb_kernel120_f.o
nb_kernel120_f.f:133:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel120_f.f:299:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel120_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:222:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:209:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:218:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:205:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:202:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:220:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:219:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:217:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:208:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:223:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:221:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:215:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:216:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:226:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel130_f.lo nb_kernel130_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel130_f.f  -fPIC -o .libs/nb_kernel130_f.o
nb_kernel130_f.f:137:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel130_f.f:155:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel130_f.f:325:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel130_f.f:342:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel130_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:247:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:234:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:243:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:230:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:227:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:245:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:244:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:242:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:233:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:248:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:246:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:251:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel122_f.lo nb_kernel122_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel122_f.f  -fPIC -o .libs/nb_kernel122_f.o
nb_kernel122_f.f:203:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel122_f.f:212:29:

           fval             = rsq12
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel122_f.f:221:29:

           fval             = rsq13
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel122_f.f:230:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel122_f.f:239:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel122_f.f:248:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel122_f.f:257:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel122_f.f:266:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel122_f.f:275:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel122_f.f:619:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel122_f.f:628:29:

           fval             = rsq12
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel122_f.f:637:29:

           fval             = rsq13
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel122_f.f:646:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel122_f.f:655:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel122_f.f:664:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel122_f.f:673:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel122_f.f:682:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel122_f.f:691:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel122_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:478:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:465:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:474:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:461:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:458:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:476:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:475:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:473:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:464:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:479:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:477:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:471:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:472:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:482:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel114_f.lo nb_kernel114_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel114_f.f  -fPIC -o .libs/nb_kernel114_f.o
nb_kernel114_f.f:219:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel114_f.f:228:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel114_f.f:237:29:

           fval             = rsq24
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel114_f.f:246:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel114_f.f:255:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel114_f.f:264:29:

           fval             = rsq34
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel114_f.f:273:29:

           fval             = rsq42
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel114_f.f:282:29:

           fval             = rsq43
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel114_f.f:291:29:

           fval             = rsq44
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel114_f.f:660:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel114_f.f:669:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel114_f.f:678:29:

           fval             = rsq24
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel114_f.f:687:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel114_f.f:696:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel114_f.f:705:29:

           fval             = rsq34
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel114_f.f:714:29:

           fval             = rsq42
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel114_f.f:723:29:

           fval             = rsq43
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel114_f.f:732:29:

           fval             = rsq44
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel114_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:506:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:493:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:502:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:489:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:486:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:504:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:503:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:501:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:492:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:507:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:505:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:499:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:500:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:510:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel123_f.lo nb_kernel123_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel123_f.f  -fPIC -o .libs/nb_kernel123_f.o
nb_kernel123_f.f:173:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel123_f.f:182:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel123_f.f:191:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel123_f.f:200:29:

           fval             = rsq41
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel123_f.f:445:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel123_f.f:454:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel123_f.f:463:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel123_f.f:472:29:

           fval             = rsq41
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel123_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:337:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:324:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:333:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:320:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:317:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:335:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:334:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:332:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:323:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:338:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:336:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:330:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:331:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:341:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel104_f.lo nb_kernel104_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel104_f.f  -fPIC -o .libs/nb_kernel104_f.o
nb_kernel104_f.f:193:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel104_f.f:202:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel104_f.f:211:29:

           fval             = rsq24
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel104_f.f:220:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel104_f.f:229:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel104_f.f:238:29:

           fval             = rsq34
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel104_f.f:247:29:

           fval             = rsq42
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel104_f.f:256:29:

           fval             = rsq43
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel104_f.f:265:29:

           fval             = rsq44
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel104_f.f:592:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel104_f.f:601:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel104_f.f:610:29:

           fval             = rsq24
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel104_f.f:619:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel104_f.f:628:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel104_f.f:637:29:

           fval             = rsq34
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel104_f.f:646:29:

           fval             = rsq42
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel104_f.f:655:29:

           fval             = rsq43
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel104_f.f:664:29:

           fval             = rsq44
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel104_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:462:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:449:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:458:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:445:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:442:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:460:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:459:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:457:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:448:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:463:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:461:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:452:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:455:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:451:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:453:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:456:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:454:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:466:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel112_f.lo nb_kernel112_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel112_f.f  -fPIC -o .libs/nb_kernel112_f.o
nb_kernel112_f.f:202:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel112_f.f:211:29:

           fval             = rsq12
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel112_f.f:220:29:

           fval             = rsq13
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel112_f.f:229:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel112_f.f:238:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel112_f.f:247:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel112_f.f:256:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel112_f.f:265:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel112_f.f:274:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel112_f.f:616:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel112_f.f:625:29:

           fval             = rsq12
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel112_f.f:634:29:

           fval             = rsq13
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel112_f.f:643:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel112_f.f:652:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel112_f.f:661:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel112_f.f:670:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel112_f.f:679:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel112_f.f:688:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel112_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:476:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:463:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:472:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:459:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:456:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:474:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:473:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:471:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:462:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:477:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:475:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:469:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:470:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:480:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel124_f.lo nb_kernel124_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel124_f.f  -fPIC -o .libs/nb_kernel124_f.o
nb_kernel124_f.f:219:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel124_f.f:228:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel124_f.f:237:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel124_f.f:246:29:

           fval             = rsq24
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel124_f.f:255:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel124_f.f:264:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel124_f.f:273:29:

           fval             = rsq34
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel124_f.f:282:29:

           fval             = rsq42
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel124_f.f:291:29:

           fval             = rsq43
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel124_f.f:300:29:

           fval             = rsq44
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel124_f.f:671:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel124_f.f:680:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel124_f.f:689:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel124_f.f:698:29:

           fval             = rsq24
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel124_f.f:707:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel124_f.f:716:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel124_f.f:725:29:

           fval             = rsq34
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel124_f.f:734:29:

           fval             = rsq42
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel124_f.f:743:29:

           fval             = rsq43
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel124_f.f:752:29:

           fval             = rsq44
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel124_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:517:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:504:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:513:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:500:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:497:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:515:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:514:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:512:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:503:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:518:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:516:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:510:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:511:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:521:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel131_f.lo nb_kernel131_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel131_f.f  -fPIC -o .libs/nb_kernel131_f.o
nb_kernel131_f.f:165:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel131_f.f:174:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel131_f.f:183:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel131_f.f:202:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel131_f.f:427:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel131_f.f:436:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel131_f.f:445:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel131_f.f:463:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel131_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:327:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:314:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:323:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:310:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:307:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:325:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:324:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:322:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:313:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:328:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:326:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:331:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel200_f.lo nb_kernel200_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel200_f.f  -fPIC -o .libs/nb_kernel200_f.o
nb_kernel200_f.f:126:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel200_f.f:275:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel200_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:206:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:202:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:189:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:186:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:204:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:203:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:201:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:207:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:205:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:196:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:199:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:195:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:197:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:200:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:198:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:210:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel201_f.lo nb_kernel201_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel201_f.f  -fPIC -o .libs/nb_kernel201_f.o
nb_kernel201_f.f:154:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel201_f.f:163:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel201_f.f:172:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel201_f.f:379:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel201_f.f:388:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel201_f.f:397:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel201_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:288:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:284:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:271:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:268:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:286:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:285:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:283:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:289:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:287:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:278:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:281:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:277:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:279:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:282:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:280:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:292:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel134_f.lo nb_kernel134_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel134_f.f  -fPIC -o .libs/nb_kernel134_f.o
nb_kernel134_f.f:222:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel134_f.f:231:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel134_f.f:240:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel134_f.f:249:29:

           fval             = rsq24
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel134_f.f:258:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel134_f.f:267:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel134_f.f:276:29:

           fval             = rsq34
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel134_f.f:285:29:

           fval             = rsq42
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel134_f.f:294:29:

           fval             = rsq43
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel134_f.f:303:29:

           fval             = rsq44
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel134_f.f:314:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel134_f.f:694:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel134_f.f:703:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel134_f.f:712:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel134_f.f:721:29:

           fval             = rsq24
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel134_f.f:730:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel134_f.f:739:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel134_f.f:748:29:

           fval             = rsq34
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel134_f.f:757:29:

           fval             = rsq42
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel134_f.f:766:29:

           fval             = rsq43
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel134_f.f:775:29:

           fval             = rsq44
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel134_f.f:786:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel134_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:540:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:527:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:536:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:523:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:520:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:538:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:537:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:535:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:526:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:541:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:539:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:544:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel133_f.lo nb_kernel133_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel133_f.f  -fPIC -o .libs/nb_kernel133_f.o
nb_kernel133_f.f:177:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel133_f.f:186:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel133_f.f:195:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel133_f.f:204:29:

           fval             = rsq41
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel133_f.f:218:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel133_f.f:469:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel133_f.f:478:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel133_f.f:487:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel133_f.f:496:29:

           fval             = rsq41
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel133_f.f:510:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel133_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:360:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:347:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:356:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:343:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:340:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:358:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:357:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:355:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:346:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:361:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:359:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:364:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel210_f.lo nb_kernel210_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel210_f.f  -fPIC -o .libs/nb_kernel210_f.o
nb_kernel210_f.f:134:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel210_f.f:301:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel210_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:223:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:219:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:206:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:203:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:221:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:220:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:218:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:224:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:222:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:216:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:217:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:227:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel132_f.lo nb_kernel132_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel132_f.f  -fPIC -o .libs/nb_kernel132_f.o
nb_kernel132_f.f:206:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel132_f.f:215:29:

           fval             = rsq12
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel132_f.f:224:29:

           fval             = rsq13
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel132_f.f:233:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel132_f.f:242:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel132_f.f:251:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel132_f.f:260:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel132_f.f:269:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel132_f.f:278:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel132_f.f:293:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel132_f.f:644:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel132_f.f:653:29:

           fval             = rsq12
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel132_f.f:662:29:

           fval             = rsq13
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel132_f.f:671:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel132_f.f:680:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel132_f.f:689:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel132_f.f:698:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel132_f.f:707:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel132_f.f:716:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel132_f.f:730:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel132_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:503:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:490:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:499:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:486:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:483:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:501:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:500:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:498:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:489:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:504:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:502:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:507:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel203_f.lo nb_kernel203_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel203_f.f  -fPIC -o .libs/nb_kernel203_f.o
nb_kernel203_f.f:154:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel203_f.f:163:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel203_f.f:172:29:

           fval             = rsq41
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel203_f.f:379:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel203_f.f:388:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel203_f.f:397:29:

           fval             = rsq41
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel203_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:288:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:284:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:271:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:268:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:286:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:285:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:283:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:289:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:287:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:278:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:281:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:277:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:279:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:282:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:280:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:292:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel214_f.lo nb_kernel214_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel214_f.f  -fPIC -o .libs/nb_kernel214_f.o
nb_kernel214_f.f:220:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel214_f.f:229:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel214_f.f:238:29:

           fval             = rsq24
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel214_f.f:247:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel214_f.f:256:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel214_f.f:265:29:

           fval             = rsq34
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel214_f.f:274:29:

           fval             = rsq42
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel214_f.f:283:29:

           fval             = rsq43
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel214_f.f:292:29:

           fval             = rsq44
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel214_f.f:671:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel214_f.f:680:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel214_f.f:689:29:

           fval             = rsq24
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel214_f.f:698:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel214_f.f:707:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel214_f.f:716:29:

           fval             = rsq34
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel214_f.f:725:29:

           fval             = rsq42
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel214_f.f:734:29:

           fval             = rsq43
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel214_f.f:743:29:

           fval             = rsq44
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel214_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:516:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:512:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:499:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:496:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:514:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:513:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:511:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:517:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:515:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:509:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:510:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:520:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel211_f.lo nb_kernel211_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel211_f.f  -fPIC -o .libs/nb_kernel211_f.o
nb_kernel211_f.f:162:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel211_f.f:171:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel211_f.f:180:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel211_f.f:405:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel211_f.f:414:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel211_f.f:423:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel211_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:305:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:301:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:288:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:285:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:303:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:302:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:300:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:306:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:304:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:298:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:299:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:309:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel221_f.lo nb_kernel221_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel221_f.f  -fPIC -o .libs/nb_kernel221_f.o
nb_kernel221_f.f:162:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel221_f.f:171:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel221_f.f:180:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel221_f.f:407:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel221_f.f:416:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel221_f.f:425:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel221_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:307:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:303:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:290:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:287:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:305:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:304:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:302:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:308:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:306:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:300:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:301:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:311:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel213_f.lo nb_kernel213_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel213_f.f  -fPIC -o .libs/nb_kernel213_f.o
nb_kernel213_f.f:175:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel213_f.f:184:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel213_f.f:193:29:

           fval             = rsq41
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel213_f.f:440:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel213_f.f:449:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel213_f.f:458:29:

           fval             = rsq41
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel213_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:330:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:326:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:313:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:310:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:328:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:327:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:325:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:331:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:329:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:323:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:324:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:334:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel202_f.lo nb_kernel202_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel202_f.f  -fPIC -o .libs/nb_kernel202_f.o
nb_kernel202_f.f:194:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel202_f.f:203:29:

           fval             = rsq12
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel202_f.f:212:29:

           fval             = rsq13
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel202_f.f:221:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel202_f.f:230:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel202_f.f:239:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel202_f.f:248:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel202_f.f:257:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel202_f.f:266:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel202_f.f:603:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel202_f.f:612:29:

           fval             = rsq12
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel202_f.f:621:29:

           fval             = rsq13
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel202_f.f:630:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel202_f.f:639:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel202_f.f:648:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel202_f.f:657:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel202_f.f:666:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel202_f.f:675:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel202_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:472:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:468:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:455:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:452:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:470:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:469:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:467:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:473:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:471:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:462:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:465:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:461:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:463:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:466:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:464:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:476:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel230_f.lo nb_kernel230_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel230_f.f  -fPIC -o .libs/nb_kernel230_f.o
nb_kernel230_f.f:138:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel230_f.f:157:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel230_f.f:328:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel230_f.f:346:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel230_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:249:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:245:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:232:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:229:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:247:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:246:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:244:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:250:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:248:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:253:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel204_f.lo nb_kernel204_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel204_f.f  -fPIC -o .libs/nb_kernel204_f.o
nb_kernel204_f.f:194:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel204_f.f:203:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel204_f.f:212:29:

           fval             = rsq24
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel204_f.f:221:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel204_f.f:230:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel204_f.f:239:29:

           fval             = rsq34
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel204_f.f:248:29:

           fval             = rsq42
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel204_f.f:257:29:

           fval             = rsq43
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel204_f.f:266:29:

           fval             = rsq44
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel204_f.f:603:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel204_f.f:612:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel204_f.f:621:29:

           fval             = rsq24
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel204_f.f:630:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel204_f.f:639:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel204_f.f:648:29:

           fval             = rsq34
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel204_f.f:657:29:

           fval             = rsq42
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel204_f.f:666:29:

           fval             = rsq43
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel204_f.f:675:29:

           fval             = rsq44
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel204_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:472:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:468:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:455:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:452:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:470:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:469:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:467:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:473:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:471:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:462:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:465:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:461:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:463:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:466:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:464:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:476:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel220_f.lo nb_kernel220_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel220_f.f  -fPIC -o .libs/nb_kernel220_f.o
nb_kernel220_f.f:134:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel220_f.f:303:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel220_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:225:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:221:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:208:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:205:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:223:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:222:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:220:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:226:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:224:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:218:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:219:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:229:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel212_f.lo nb_kernel212_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel212_f.f  -fPIC -o .libs/nb_kernel212_f.o
nb_kernel212_f.f:203:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel212_f.f:212:29:

           fval             = rsq12
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel212_f.f:221:29:

           fval             = rsq13
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel212_f.f:230:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel212_f.f:239:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel212_f.f:248:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel212_f.f:257:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel212_f.f:266:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel212_f.f:275:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel212_f.f:628:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel212_f.f:637:29:

           fval             = rsq12
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel212_f.f:646:29:

           fval             = rsq13
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel212_f.f:655:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel212_f.f:664:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel212_f.f:673:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel212_f.f:682:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel212_f.f:691:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel212_f.f:700:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel212_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:487:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:483:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:470:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:467:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:485:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:484:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:482:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:488:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:486:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:480:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:481:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:491:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel222_f.lo nb_kernel222_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel222_f.f  -fPIC -o .libs/nb_kernel222_f.o
nb_kernel222_f.f:204:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel222_f.f:213:29:

           fval             = rsq12
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel222_f.f:222:29:

           fval             = rsq13
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel222_f.f:231:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel222_f.f:240:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel222_f.f:249:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel222_f.f:258:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel222_f.f:267:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel222_f.f:276:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel222_f.f:631:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel222_f.f:640:29:

           fval             = rsq12
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel222_f.f:649:29:

           fval             = rsq13
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel222_f.f:658:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel222_f.f:667:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel222_f.f:676:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel222_f.f:685:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel222_f.f:694:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel222_f.f:703:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel222_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:489:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:485:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:472:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:469:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:487:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:486:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:484:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:490:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:488:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:482:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:483:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:493:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel224_f.lo nb_kernel224_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel224_f.f  -fPIC -o .libs/nb_kernel224_f.o
nb_kernel224_f.f:220:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel224_f.f:229:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel224_f.f:238:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel224_f.f:247:29:

           fval             = rsq24
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel224_f.f:256:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel224_f.f:265:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel224_f.f:274:29:

           fval             = rsq34
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel224_f.f:283:29:

           fval             = rsq42
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel224_f.f:292:29:

           fval             = rsq43
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel224_f.f:301:29:

           fval             = rsq44
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel224_f.f:682:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel224_f.f:691:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel224_f.f:700:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel224_f.f:709:29:

           fval             = rsq24
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel224_f.f:718:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel224_f.f:727:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel224_f.f:736:29:

           fval             = rsq34
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel224_f.f:745:29:

           fval             = rsq42
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel224_f.f:754:29:

           fval             = rsq43
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel224_f.f:763:29:

           fval             = rsq44
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel224_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:527:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:523:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:510:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:507:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:525:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:524:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:522:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:528:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:526:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:520:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:521:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:531:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel233_f.lo nb_kernel233_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel233_f.f  -fPIC -o .libs/nb_kernel233_f.o
nb_kernel233_f.f:178:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel233_f.f:187:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel233_f.f:196:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel233_f.f:205:29:

           fval             = rsq41
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel233_f.f:219:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel233_f.f:474:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel233_f.f:483:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel233_f.f:492:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel233_f.f:501:29:

           fval             = rsq41
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel233_f.f:515:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel233_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:364:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:360:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:347:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:344:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:362:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:361:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:359:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:365:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:363:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:368:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel223_f.lo nb_kernel223_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel223_f.f  -fPIC -o .libs/nb_kernel223_f.o
nb_kernel223_f.f:174:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel223_f.f:183:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel223_f.f:192:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel223_f.f:201:29:

           fval             = rsq41
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel223_f.f:450:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel223_f.f:459:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel223_f.f:468:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel223_f.f:477:29:

           fval             = rsq41
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel223_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:341:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:337:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:324:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:321:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:339:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:338:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:336:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:342:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:340:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:334:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:335:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:345:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel300_f.lo nb_kernel300_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel300_f.f  -fPIC -o .libs/nb_kernel300_f.o
nb_kernel300_f.f:129:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel300_f.f:141:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel300_f.f:292:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel300_f.f:304:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel300_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:221:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:208:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:217:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:204:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:201:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:219:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:218:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:216:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:207:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:222:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:220:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:211:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:210:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:212:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:213:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:225:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel303_f.lo nb_kernel303_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel303_f.f  -fPIC -o .libs/nb_kernel303_f.o
nb_kernel303_f.f:157:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel303_f.f:166:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel303_f.f:175:29:

           fval             = rsq41
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel303_f.f:188:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel303_f.f:214:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel303_f.f:241:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel303_f.f:420:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel303_f.f:429:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel303_f.f:438:29:

           fval             = rsq41
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel303_f.f:451:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel303_f.f:465:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel303_f.f:480:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel303_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:327:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:314:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:323:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:310:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:307:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:325:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:324:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:322:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:313:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:328:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:326:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:317:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:316:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:318:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:319:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:331:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel234_f.lo nb_kernel234_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel234_f.f  -fPIC -o .libs/nb_kernel234_f.o
nb_kernel234_f.f:223:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel234_f.f:232:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel234_f.f:241:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel234_f.f:250:29:

           fval             = rsq24
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel234_f.f:259:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel234_f.f:268:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel234_f.f:277:29:

           fval             = rsq34
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel234_f.f:286:29:

           fval             = rsq42
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel234_f.f:295:29:

           fval             = rsq43
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel234_f.f:304:29:

           fval             = rsq44
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel234_f.f:315:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel234_f.f:705:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel234_f.f:714:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel234_f.f:723:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel234_f.f:732:29:

           fval             = rsq24
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel234_f.f:741:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel234_f.f:750:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel234_f.f:759:29:

           fval             = rsq34
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel234_f.f:768:29:

           fval             = rsq42
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel234_f.f:777:29:

           fval             = rsq43
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel234_f.f:786:29:

           fval             = rsq44
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel234_f.f:797:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel234_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:550:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:546:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:533:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:530:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:548:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:547:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:545:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:551:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:549:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:554:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel231_f.lo nb_kernel231_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel231_f.f  -fPIC -o .libs/nb_kernel231_f.o
nb_kernel231_f.f:166:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel231_f.f:175:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel231_f.f:184:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel231_f.f:204:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel231_f.f:432:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel231_f.f:441:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel231_f.f:450:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel231_f.f:469:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel231_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:331:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:327:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:314:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:311:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:329:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:328:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:326:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:332:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:330:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:335:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel310_f.lo nb_kernel310_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel310_f.f  -fPIC -o .libs/nb_kernel310_f.o
nb_kernel310_f.f:138:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel310_f.f:154:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel310_f.f:320:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel310_f.f:336:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel310_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:240:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:227:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:236:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:223:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:220:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:238:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:237:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:235:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:226:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:241:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:239:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:244:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel301_f.lo nb_kernel301_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel301_f.f  -fPIC -o .libs/nb_kernel301_f.o
nb_kernel301_f.f:157:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel301_f.f:166:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel301_f.f:175:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel301_f.f:188:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel301_f.f:215:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel301_f.f:241:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel301_f.f:420:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel301_f.f:429:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel301_f.f:438:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel301_f.f:451:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel301_f.f:466:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel301_f.f:480:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel301_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:327:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:314:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:323:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:310:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:307:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:325:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:324:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:322:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:313:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:328:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:326:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:317:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:316:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:318:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:319:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:331:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel311_f.lo nb_kernel311_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel311_f.f  -fPIC -o .libs/nb_kernel311_f.o
nb_kernel311_f.f:166:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel311_f.f:175:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel311_f.f:184:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel311_f.f:201:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel311_f.f:233:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel311_f.f:259:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel311_f.f:448:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel311_f.f:457:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel311_f.f:466:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel311_f.f:483:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel311_f.f:502:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel311_f.f:516:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel311_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:346:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:333:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:342:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:329:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:326:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:344:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:343:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:341:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:332:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:347:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:345:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:350:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel232_f.lo nb_kernel232_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel232_f.f  -fPIC -o .libs/nb_kernel232_f.o
nb_kernel232_f.f:207:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel232_f.f:216:29:

           fval             = rsq12
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel232_f.f:225:29:

           fval             = rsq13
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel232_f.f:234:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel232_f.f:243:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel232_f.f:252:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel232_f.f:261:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel232_f.f:270:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel232_f.f:279:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel232_f.f:295:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel232_f.f:655:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel232_f.f:664:29:

           fval             = rsq12
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel232_f.f:673:29:

           fval             = rsq13
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel232_f.f:682:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel232_f.f:691:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel232_f.f:700:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel232_f.f:709:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel232_f.f:718:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel232_f.f:727:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel232_f.f:742:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel232_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:513:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:509:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:496:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:493:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:511:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:510:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:508:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:514:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:512:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:517:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel313_f.lo nb_kernel313_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel313_f.f  -fPIC -o .libs/nb_kernel313_f.o
nb_kernel313_f.f:179:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel313_f.f:188:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel313_f.f:197:29:

           fval             = rsq41
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel313_f.f:227:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel313_f.f:253:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel313_f.f:280:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel313_f.f:482:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel313_f.f:491:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel313_f.f:500:29:

           fval             = rsq41
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel313_f.f:520:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel313_f.f:534:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel313_f.f:549:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel313_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:370:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:357:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:366:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:353:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:350:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:368:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:367:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:365:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:356:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:371:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:369:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:374:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel302_f.lo nb_kernel302_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel302_f.f  -fPIC -o .libs/nb_kernel302_f.o
nb_kernel302_f.f:197:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel302_f.f:206:29:

           fval             = rsq12
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel302_f.f:215:29:

           fval             = rsq13
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel302_f.f:224:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel302_f.f:233:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel302_f.f:242:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel302_f.f:251:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel302_f.f:260:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel302_f.f:269:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel302_f.f:281:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:308:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:335:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:362:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:389:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:416:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:443:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:470:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:497:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:716:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel302_f.f:725:29:

           fval             = rsq12
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel302_f.f:734:29:

           fval             = rsq13
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel302_f.f:743:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel302_f.f:752:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel302_f.f:761:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel302_f.f:770:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel302_f.f:779:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel302_f.f:788:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel302_f.f:800:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:815:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:830:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:845:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:860:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:875:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:890:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:905:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:920:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:583:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:570:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:579:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:566:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:563:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:581:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:580:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:578:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:569:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:584:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:582:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:573:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:572:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:574:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:575:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:587:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel312_f.lo nb_kernel312_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel312_f.f  -fPIC -o .libs/nb_kernel312_f.o
nb_kernel312_f.f:207:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel312_f.f:216:29:

           fval             = rsq12
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel312_f.f:225:29:

           fval             = rsq13
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel312_f.f:234:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel312_f.f:243:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel312_f.f:252:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel312_f.f:261:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel312_f.f:270:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel312_f.f:279:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel312_f.f:292:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:324:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:351:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:378:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:405:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:432:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:459:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:486:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:513:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:743:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel312_f.f:752:29:

           fval             = rsq12
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel312_f.f:761:29:

           fval             = rsq13
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel312_f.f:770:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel312_f.f:779:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel312_f.f:788:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel312_f.f:797:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel312_f.f:806:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel312_f.f:815:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel312_f.f:828:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:847:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:862:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:877:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:892:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:907:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:922:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:937:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:952:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:600:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:587:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:596:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:583:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:580:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:598:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:597:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:595:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:586:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:601:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:599:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:604:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel320_f.lo nb_kernel320_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel320_f.f  -fPIC -o .libs/nb_kernel320_f.o
nb_kernel320_f.f:138:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel320_f.f:155:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel320_f.f:322:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel320_f.f:339:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel320_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:242:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:229:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:238:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:225:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:222:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:240:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:239:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:237:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:228:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:243:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:241:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:246:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel304_f.lo nb_kernel304_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel304_f.f  -fPIC -o .libs/nb_kernel304_f.o
nb_kernel304_f.f:197:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel304_f.f:206:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel304_f.f:215:29:

           fval             = rsq24
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel304_f.f:224:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel304_f.f:233:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel304_f.f:242:29:

           fval             = rsq34
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel304_f.f:251:29:

           fval             = rsq42
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel304_f.f:260:29:

           fval             = rsq43
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel304_f.f:269:29:

           fval             = rsq44
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel304_f.f:281:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:308:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:335:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:362:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:389:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:416:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:443:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:470:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:497:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:716:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel304_f.f:725:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel304_f.f:734:29:

           fval             = rsq24
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel304_f.f:743:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel304_f.f:752:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel304_f.f:761:29:

           fval             = rsq34
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel304_f.f:770:29:

           fval             = rsq42
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel304_f.f:779:29:

           fval             = rsq43
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel304_f.f:788:29:

           fval             = rsq44
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel304_f.f:800:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:815:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:830:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:845:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:860:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:875:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:890:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:905:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:920:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:583:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:570:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:579:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:566:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:563:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:581:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:580:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:578:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:569:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:584:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:582:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:573:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:572:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:574:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:575:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:587:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel314_f.lo nb_kernel314_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel314_f.f  -fPIC -o .libs/nb_kernel314_f.o
nb_kernel314_f.f:224:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel314_f.f:233:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel314_f.f:242:29:

           fval             = rsq24
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel314_f.f:251:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel314_f.f:260:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel314_f.f:269:29:

           fval             = rsq34
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel314_f.f:278:29:

           fval             = rsq42
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel314_f.f:287:29:

           fval             = rsq43
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel314_f.f:296:29:

           fval             = rsq44
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel314_f.f:322:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:349:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:376:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:403:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:430:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:457:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:484:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:511:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:538:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:785:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel314_f.f:794:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel314_f.f:803:29:

           fval             = rsq24
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel314_f.f:812:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel314_f.f:821:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel314_f.f:830:29:

           fval             = rsq34
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel314_f.f:839:29:

           fval             = rsq42
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel314_f.f:848:29:

           fval             = rsq43
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel314_f.f:857:29:

           fval             = rsq44
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel314_f.f:873:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:888:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:903:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:918:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:933:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:948:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:963:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:978:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:993:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:628:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:615:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:624:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:611:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:608:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:626:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:625:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:623:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:614:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:629:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:627:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:632:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel324_f.lo nb_kernel324_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel324_f.f  -fPIC -o .libs/nb_kernel324_f.o
nb_kernel324_f.f:224:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel324_f.f:233:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel324_f.f:242:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel324_f.f:251:29:

           fval             = rsq24
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel324_f.f:260:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel324_f.f:269:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel324_f.f:278:29:

           fval             = rsq34
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel324_f.f:287:29:

           fval             = rsq42
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel324_f.f:296:29:

           fval             = rsq43
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel324_f.f:305:29:

           fval             = rsq44
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel324_f.f:333:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:360:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:387:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:414:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:441:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:468:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:495:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:522:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:549:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:796:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel324_f.f:805:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel324_f.f:814:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel324_f.f:823:29:

           fval             = rsq24
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel324_f.f:832:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel324_f.f:841:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel324_f.f:850:29:

           fval             = rsq34
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel324_f.f:859:29:

           fval             = rsq42
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel324_f.f:868:29:

           fval             = rsq43
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel324_f.f:877:29:

           fval             = rsq44
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel324_f.f:895:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:910:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:925:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:940:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:955:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:970:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:985:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:1000:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:1015:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:639:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:626:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:635:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:622:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:619:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:637:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:636:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:634:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:625:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:640:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:638:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:643:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel321_f.lo nb_kernel321_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel321_f.f  -fPIC -o .libs/nb_kernel321_f.o
nb_kernel321_f.f:166:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel321_f.f:175:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel321_f.f:184:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel321_f.f:202:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel321_f.f:235:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel321_f.f:261:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel321_f.f:450:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel321_f.f:459:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel321_f.f:468:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel321_f.f:486:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel321_f.f:506:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel321_f.f:520:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel321_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:348:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:335:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:344:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:331:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:328:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:346:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:345:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:343:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:334:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:349:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:347:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:352:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel333_f.lo nb_kernel333_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel333_f.f  -fPIC -o .libs/nb_kernel333_f.o
nb_kernel333_f.f:177:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel333_f.f:186:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel333_f.f:195:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel333_f.f:204:29:

           fval             = rsq41
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel333_f.f:218:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel333_f.f:257:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel333_f.f:283:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel333_f.f:310:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel333_f.f:509:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel333_f.f:518:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel333_f.f:527:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel333_f.f:536:29:

           fval             = rsq41
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel333_f.f:550:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel333_f.f:575:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel333_f.f:589:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel333_f.f:604:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel333_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:400:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:387:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:396:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:383:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:380:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:398:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:397:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:395:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:386:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:401:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:399:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:404:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel330_f.lo nb_kernel330_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel330_f.f  -fPIC -o .libs/nb_kernel330_f.o
nb_kernel330_f.f:137:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel330_f.f:152:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel330_f.f:332:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel330_f.f:347:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel330_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:254:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:241:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:250:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:237:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:234:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:252:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:251:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:249:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:240:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:255:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:253:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:258:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel323_f.lo nb_kernel323_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel323_f.f  -fPIC -o .libs/nb_kernel323_f.o
nb_kernel323_f.f:178:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel323_f.f:187:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel323_f.f:196:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel323_f.f:205:29:

           fval             = rsq41
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel323_f.f:238:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel323_f.f:264:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel323_f.f:291:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel323_f.f:492:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel323_f.f:501:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel323_f.f:510:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel323_f.f:519:29:

           fval             = rsq41
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel323_f.f:542:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel323_f.f:556:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel323_f.f:571:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel323_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:381:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:368:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:377:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:364:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:361:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:379:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:378:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:376:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:367:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:382:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:380:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:385:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel400_f.lo nb_kernel400_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel400_f.f  -fPIC -o .libs/nb_kernel400_f.o
nb_kernel400_f.f:133:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel400_f.f:149:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel400_f.f:306:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel400_f.f:321:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel400_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:233:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:220:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:229:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:216:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:213:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:219:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:234:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:232:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:223:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:226:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:222:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:224:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:227:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:225:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:237:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src  -I../../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel_f77sync.lo ../../../../../src/gmxlib/nonbonded/nb_kernel/nb_kernel_f77sync.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -I../../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel/nb_kernel_f77sync.c  -fPIC -DPIC -o .libs/nb_kernel_f77sync.o
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel430_f.lo nb_kernel430_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel430_f.f  -fPIC -o .libs/nb_kernel430_f.o
nb_kernel430_f.f:141:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel430_f.f:160:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel430_f.f:179:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel430_f.f:351:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel430_f.f:369:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel430_f.f:383:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel430_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:271:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:258:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:267:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:254:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:251:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:257:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:272:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:270:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:275:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel334_f.lo nb_kernel334_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel334_f.f  -fPIC -o .libs/nb_kernel334_f.o
nb_kernel334_f.f:222:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel334_f.f:231:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel334_f.f:240:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel334_f.f:249:29:

           fval             = rsq24
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel334_f.f:258:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel334_f.f:267:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel334_f.f:276:29:

           fval             = rsq34
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel334_f.f:285:29:

           fval             = rsq42
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel334_f.f:294:29:

           fval             = rsq43
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel334_f.f:303:29:

           fval             = rsq44
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel334_f.f:314:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:352:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:379:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:406:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:433:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:460:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:487:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:514:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:541:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:568:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:812:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel334_f.f:821:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel334_f.f:830:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel334_f.f:839:29:

           fval             = rsq24
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel334_f.f:848:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel334_f.f:857:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel334_f.f:866:29:

           fval             = rsq34
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel334_f.f:875:29:

           fval             = rsq42
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel334_f.f:884:29:

           fval             = rsq43
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel334_f.f:893:29:

           fval             = rsq44
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel334_f.f:904:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:928:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:943:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:958:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:973:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:988:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:1003:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:1018:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:1033:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:1048:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:658:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:645:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:654:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:641:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:638:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:656:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:655:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:653:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:644:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:659:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:657:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:662:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel331_f.lo nb_kernel331_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel331_f.f  -fPIC -o .libs/nb_kernel331_f.o
nb_kernel331_f.f:165:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel331_f.f:174:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel331_f.f:183:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel331_f.f:199:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel331_f.f:247:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel331_f.f:273:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel331_f.f:460:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel331_f.f:469:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel331_f.f:478:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel331_f.f:494:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel331_f.f:526:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel331_f.f:540:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel331_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:360:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:347:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:356:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:343:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:340:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:358:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:357:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:355:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:346:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:361:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:359:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:364:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel420_f.lo nb_kernel420_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel420_f.f  -fPIC -o .libs/nb_kernel420_f.o
nb_kernel420_f.f:142:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel420_f.f:163:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel420_f.f:336:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel420_f.f:356:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel420_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:254:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:241:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:250:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:237:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:234:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:240:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:255:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:253:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:247:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:248:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:258:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel410_f.lo nb_kernel410_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel410_f.f  -fPIC -o .libs/nb_kernel410_f.o
nb_kernel410_f.f:142:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel410_f.f:162:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel410_f.f:334:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel410_f.f:353:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel410_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:252:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:239:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:248:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:235:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:232:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:238:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:253:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:251:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:245:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:246:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:256:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel322_f.lo nb_kernel322_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel322_f.f  -fPIC -o .libs/nb_kernel322_f.o
nb_kernel322_f.f:208:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel322_f.f:217:29:

           fval             = rsq12
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel322_f.f:226:29:

           fval             = rsq13
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel322_f.f:235:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel322_f.f:244:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel322_f.f:253:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel322_f.f:262:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel322_f.f:271:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel322_f.f:280:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel322_f.f:293:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:326:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:353:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:380:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:407:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:434:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:461:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:488:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:515:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:746:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel322_f.f:755:29:

           fval             = rsq12
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel322_f.f:764:29:

           fval             = rsq13
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel322_f.f:773:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel322_f.f:782:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel322_f.f:791:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel322_f.f:800:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel322_f.f:809:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel322_f.f:818:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel322_f.f:831:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:851:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:866:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:881:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:896:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:911:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:926:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:941:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:956:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:602:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:589:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:598:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:585:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:582:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:600:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:599:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:597:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:588:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:603:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:601:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:606:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c -o nb_kernel332_f.lo nb_kernel332_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -c nb_kernel332_f.f  -fPIC -o .libs/nb_kernel332_f.o
nb_kernel332_f.f:206:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel332_f.f:215:29:

           fval             = rsq12
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel332_f.f:224:29:

           fval             = rsq13
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel332_f.f:233:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel332_f.f:242:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel332_f.f:251:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel332_f.f:260:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel332_f.f:269:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel332_f.f:278:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel332_f.f:290:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:338:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:365:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:392:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:419:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:446:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:473:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:500:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:527:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:755:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel332_f.f:764:29:

           fval             = rsq12
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel332_f.f:773:29:

           fval             = rsq13
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel332_f.f:782:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel332_f.f:791:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel332_f.f:800:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel332_f.f:809:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel332_f.f:818:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel332_f.f:827:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel332_f.f:839:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:871:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:886:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:901:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:916:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:931:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:946:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:961:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:976:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:614:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:601:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:610:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:597:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:594:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:612:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:611:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:609:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:600:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:615:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:613:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:618:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o libnb_kernel.la  nb_kernel.lo nb_kernel010_f.lo nb_kernel020_f.lo nb_kernel030_f.lo nb_kernel100_f.lo nb_kernel101_f.lo nb_kernel102_f.lo nb_kernel103_f.lo nb_kernel104_f.lo nb_kernel110_f.lo nb_kernel111_f.lo nb_kernel112_f.lo nb_kernel113_f.lo nb_kernel114_f.lo nb_kernel120_f.lo nb_kernel121_f.lo nb_kernel122_f.lo nb_kernel123_f.lo nb_kernel124_f.lo nb_kernel130_f.lo nb_kernel131_f.lo nb_kernel132_f.lo nb_kernel133_f.lo nb_kernel134_f.lo nb_kernel200_f.lo nb_kernel201_f.lo nb_kernel202_f.lo nb_kernel203_f.lo nb_kernel204_f.lo nb_kernel210_f.lo nb_kernel211_f.lo nb_kernel212_f.lo nb_kernel213_f.lo nb_kernel214_f.lo nb_kernel220_f.lo nb_kernel221_f.lo nb_kernel222_f.lo nb_kernel223_f.lo nb_kernel224_f.lo nb_kernel230_f.lo nb_kernel231_f.lo nb_kernel232_f.lo nb_kernel233_f.lo nb_kernel234_f.lo nb_kernel300_f.lo nb_kernel301_f.lo nb_kernel302_f.lo nb_kernel303_f.lo nb_kernel304_f.lo nb_kernel310_f.lo nb_kernel311_f.lo nb_kernel312_f.lo nb_kernel313_f.lo nb_kernel314_f.lo nb_kernel320_f.lo nb_kernel321_f.lo nb_kernel322_f.lo nb_kernel323_f.lo nb_kernel324_f.lo nb_kernel330_f.lo nb_kernel331_f.lo nb_kernel332_f.lo nb_kernel333_f.lo nb_kernel334_f.lo nb_kernel400_f.lo nb_kernel410_f.lo nb_kernel420_f.lo nb_kernel430_f.lo  nb_kernel_f77sync.lo -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
ar cru .libs/libnb_kernel.a .libs/nb_kernel.o .libs/nb_kernel010_f.o .libs/nb_kernel020_f.o .libs/nb_kernel030_f.o .libs/nb_kernel100_f.o .libs/nb_kernel101_f.o .libs/nb_kernel102_f.o .libs/nb_kernel103_f.o .libs/nb_kernel104_f.o .libs/nb_kernel110_f.o .libs/nb_kernel111_f.o .libs/nb_kernel112_f.o .libs/nb_kernel113_f.o .libs/nb_kernel114_f.o .libs/nb_kernel120_f.o .libs/nb_kernel121_f.o .libs/nb_kernel122_f.o .libs/nb_kernel123_f.o .libs/nb_kernel124_f.o .libs/nb_kernel130_f.o .libs/nb_kernel131_f.o .libs/nb_kernel132_f.o .libs/nb_kernel133_f.o .libs/nb_kernel134_f.o .libs/nb_kernel200_f.o .libs/nb_kernel201_f.o .libs/nb_kernel202_f.o .libs/nb_kernel203_f.o .libs/nb_kernel204_f.o .libs/nb_kernel210_f.o .libs/nb_kernel211_f.o .libs/nb_kernel212_f.o .libs/nb_kernel213_f.o .libs/nb_kernel214_f.o .libs/nb_kernel220_f.o .libs/nb_kernel221_f.o .libs/nb_kernel222_f.o .libs/nb_kernel223_f.o .libs/nb_kernel224_f.o .libs/nb_kernel230_f.o .libs/nb_kernel231_f.o .libs/nb_kernel232_f.o .libs/nb_kernel233_f.o .libs/nb_kernel234_f.o .libs/nb_kernel300_f.o .libs/nb_kernel301_f.o .libs/nb_kernel302_f.o .libs/nb_kernel303_f.o .libs/nb_kernel304_f.o .libs/nb_kernel310_f.o .libs/nb_kernel311_f.o .libs/nb_kernel312_f.o .libs/nb_kernel313_f.o .libs/nb_kernel314_f.o .libs/nb_kernel320_f.o .libs/nb_kernel321_f.o .libs/nb_kernel322_f.o .libs/nb_kernel323_f.o .libs/nb_kernel324_f.o .libs/nb_kernel330_f.o .libs/nb_kernel331_f.o .libs/nb_kernel332_f.o .libs/nb_kernel333_f.o .libs/nb_kernel334_f.o .libs/nb_kernel400_f.o .libs/nb_kernel410_f.o .libs/nb_kernel420_f.o .libs/nb_kernel430_f.o .libs/nb_kernel_f77sync.o
ranlib .libs/libnb_kernel.a
creating libnb_kernel.la
(cd .libs && rm -f libnb_kernel.la && ln -s ../libnb_kernel.la libnb_kernel.la)
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/nonbonded -I../../../src  -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_generic.lo ../../../../src/gmxlib/nonbonded/nb_generic.c
mkdir .libs
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/nonbonded -I../../../src -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/nonbonded/nb_generic.c  -fPIC -DPIC -o .libs/nb_generic.o
../../../../src/gmxlib/nonbonded/nb_generic.c: In function 'gmx_nb_generic_kernel':
../../../../src/gmxlib/nonbonded/nb_generic.c:82:16: warning: unused variable 'shift' [-Wunused-variable]
  int *         shift;
                ^~~~~
../../../../src/gmxlib/nonbonded/nb_generic.c:62:25: warning: unused variable 'gbtabscale' [-Wunused-variable]
     real          facel,gbtabscale;
                         ^~~~~~~~~~
../../../../src/gmxlib/nonbonded/nb_generic.c:61:19: warning: unused variable 'nri' [-Wunused-variable]
     int           nri,ntype,table_nelements,icoul,ivdw;
                   ^~~
In file included from ../../../../src/gmxlib/nonbonded/nb_generic.c:43:
At top level:
../../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../../include/vec.h:121,
                 from ../../../../src/gmxlib/nonbonded/nb_generic.c:43:
../../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/nonbonded -I../../../src  -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nb_free_energy.lo ../../../../src/gmxlib/nonbonded/nb_free_energy.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/nonbonded -I../../../src -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/nonbonded/nb_free_energy.c  -fPIC -DPIC -o .libs/nb_free_energy.o
../../../../src/gmxlib/nonbonded/nb_free_energy.c: In function 'gmx_nb_free_energy_kernel':
../../../../src/gmxlib/nonbonded/nb_free_energy.c:100:25: warning: unused variable 'H' [-Wunused-variable]
     real          Y,F,G,H,Fp,Geps,Heps2,eps,eps2,VV,FF;
                         ^
../../../../src/gmxlib/nonbonded/nb_free_energy.c:100:23: warning: unused variable 'G' [-Wunused-variable]
     real          Y,F,G,H,Fp,Geps,Heps2,eps,eps2,VV,FF;
                       ^
../../../../src/gmxlib/nonbonded/nb_free_energy.c:89:19: warning: unused variable 'rinvsix' [-Wunused-variable]
     real          rinvsix;
                   ^~~~~~~
../../../../src/gmxlib/nonbonded/nb_free_energy.c:86:27: warning: unused variable 'vcoul' [-Wunused-variable]
     real          qqA,qqB,vcoul,vctot,krsq;
                           ^~~~~
In file included from ../../../../src/gmxlib/nonbonded/nb_free_energy.c:42:
At top level:
../../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../../include/vec.h:121,
                 from ../../../../src/gmxlib/nonbonded/nb_free_energy.c:42:
../../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/nonbonded -I../../../src  -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nonbonded.lo ../../../../src/gmxlib/nonbonded/nonbonded.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/nonbonded -I../../../src -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/nonbonded/nonbonded.c  -fPIC -DPIC -o .libs/nonbonded.o
../../../../src/gmxlib/nonbonded/nonbonded.c: In function 'do_nonbonded':
../../../../src/gmxlib/nonbonded/nonbonded.c:283:18: warning: unused variable 'fp' [-Wunused-variable]
  FILE *          fp;
                  ^~
../../../../src/gmxlib/nonbonded/nonbonded.c:281:18: warning: unused variable 'bWater' [-Wunused-variable]
  bool            bWater;
                  ^~~~~~
../../../../src/gmxlib/nonbonded/nonbonded.c:279:43: warning: unused variable 'sz' [-Wunused-variable]
  int             n,n0,n1,i,i0,i1,nrnb_ind,sz;
                                           ^~
../../../../src/gmxlib/nonbonded/nonbonded.c: In function 'do_listed_vdw_q':
../../../../src/gmxlib/nonbonded/nonbonded.c:547:15: warning: unused variable 'tmplist' [-Wunused-variable]
     t_nblist  tmplist;
               ^~~~~~~
../../../../src/gmxlib/nonbonded/nonbonded.c:538:25: warning: unused variable 'i2' [-Wunused-variable]
     int       i0=0,i1=1,i2=2;
                         ^~
In file included from ../../../../src/gmxlib/nonbonded/nonbonded.c:53:
At top level:
../../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../../src/gmxlib/nonbonded/nonbonded.c:50:
../../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../../include/vec.h:121,
                 from ../../../../src/gmxlib/nonbonded/nonbonded.c:50:
../../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded'
/bin/sh ../../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o libnonbonded.la  nonbonded.lo nb_free_energy.lo nb_generic.lo          nb_kernel_ia32_sse2/libnb_kernel_ia32_sse2.la                             	 nb_kernel/libnb_kernel.la			 -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
rm -fr .libs/libnonbonded.lax
mkdir .libs/libnonbonded.lax
rm -fr .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a
mkdir .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a
(cd .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a && ar x /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_ia32_sse2/.libs/libnb_kernel_ia32_sse2.a)
rm -fr .libs/libnonbonded.lax/libnb_kernel.a
mkdir .libs/libnonbonded.lax/libnb_kernel.a
(cd .libs/libnonbonded.lax/libnb_kernel.a && ar x /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel/.libs/libnb_kernel.a)
ar cru .libs/libnonbonded.a .libs/nonbonded.o .libs/nb_free_energy.o .libs/nb_generic.o  .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel_ia32_sse2_test_asm.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel430_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel410_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel400_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel334_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel333_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel332_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel331_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel330_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel314_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel313_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel312_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel311_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel310_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel304_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel303_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel302_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel301_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel300_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel234_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel233_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel232_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel231_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel230_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel214_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel213_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel212_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel211_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel210_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel204_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel203_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel202_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel201_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel200_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel134_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel133_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel132_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel131_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel130_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel114_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel113_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel112_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel111_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel110_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel104_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel103_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel102_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel101_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel100_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel030_ia32_sse2.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse2.a/nb_kernel010_ia32_sse2.o  .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel_f77sync.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel430_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel420_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel410_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel400_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel334_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel333_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel332_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel331_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel330_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel324_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel323_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel322_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel321_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel320_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel314_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel313_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel312_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel311_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel310_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel304_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel303_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel302_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel301_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel300_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel234_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel233_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel232_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel231_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel230_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel224_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel223_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel222_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel221_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel220_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel214_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel213_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel212_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel211_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel210_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel204_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel203_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel202_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel201_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel200_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel134_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel133_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel132_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel131_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel130_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel124_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel123_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel122_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel121_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel120_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel114_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel113_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel112_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel111_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel110_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel104_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel103_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel102_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel101_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel100_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel030_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel020_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel010_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel.o 
ranlib .libs/libnonbonded.a
rm -fr .libs/libnonbonded.lax
creating libnonbonded.la
(cd .libs && rm -f libnonbonded.la && ln -s ../libnonbonded.la libnonbonded.la)
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded'
Making all in gmx_blas
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dswap.lo ../../../../src/gmxlib/gmx_blas/dswap.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dswap.c  -fPIC -DPIC -o .libs/dswap.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o drot.lo ../../../../src/gmxlib/gmx_blas/drot.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/drot.c  -fPIC -DPIC -o .libs/drot.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dcopy.lo ../../../../src/gmxlib/gmx_blas/dcopy.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dcopy.c  -fPIC -DPIC -o .libs/dcopy.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dasum.lo ../../../../src/gmxlib/gmx_blas/dasum.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dasum.c  -fPIC -DPIC -o .libs/dasum.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dger.lo ../../../../src/gmxlib/gmx_blas/dger.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dger.c  -fPIC -DPIC -o .libs/dger.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dsyr2.lo ../../../../src/gmxlib/gmx_blas/dsyr2.c
mkdir .libs
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dsyr2.c  -fPIC -DPIC -o .libs/dsyr2.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dgemm.lo ../../../../src/gmxlib/gmx_blas/dgemm.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dgemm.c  -fPIC -DPIC -o .libs/dgemm.o
../../../../src/gmxlib/gmx_blas/dgemm.c: In function 'dgemm_':
../../../../src/gmxlib/gmx_blas/dgemm.c:27:19: warning: variable 'nrowb' set but not used [-Wunused-but-set-variable]
   int nrowa,ncola,nrowb;
                   ^~~~~
../../../../src/gmxlib/gmx_blas/dgemm.c:27:13: warning: variable 'ncola' set but not used [-Wunused-but-set-variable]
   int nrowa,ncola,nrowb;
             ^~~~~
../../../../src/gmxlib/gmx_blas/dgemm.c:27:7: warning: variable 'nrowa' set but not used [-Wunused-but-set-variable]
   int nrowa,ncola,nrowb;
       ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o ddot.lo ../../../../src/gmxlib/gmx_blas/ddot.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/ddot.c  -fPIC -DPIC -o .libs/ddot.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dscal.lo ../../../../src/gmxlib/gmx_blas/dscal.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dscal.c  -fPIC -DPIC -o .libs/dscal.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dnrm2.lo ../../../../src/gmxlib/gmx_blas/dnrm2.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dnrm2.c  -fPIC -DPIC -o .libs/dnrm2.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o daxpy.lo ../../../../src/gmxlib/gmx_blas/daxpy.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/daxpy.c  -fPIC -DPIC -o .libs/daxpy.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dtrmm.lo ../../../../src/gmxlib/gmx_blas/dtrmm.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dtrmm.c  -fPIC -DPIC -o .libs/dtrmm.o
../../../../src/gmxlib/gmx_blas/dtrmm.c: In function 'dtrmm_':
../../../../src/gmxlib/gmx_blas/dtrmm.c:32:9: warning: variable 'nrowa' set but not used [-Wunused-but-set-variable]
     int nrowa;
         ^~~~~
../../../../src/gmxlib/gmx_blas/dtrmm.c:29:20: warning: variable 'info' set but not used [-Wunused-but-set-variable]
     int i__, j, k, info;
                    ^~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o idamax.lo ../../../../src/gmxlib/gmx_blas/idamax.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/idamax.c  -fPIC -DPIC -o .libs/idamax.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dgemv.lo ../../../../src/gmxlib/gmx_blas/dgemv.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dgemv.c  -fPIC -DPIC -o .libs/dgemv.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dtrsm.lo ../../../../src/gmxlib/gmx_blas/dtrsm.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dtrsm.c  -fPIC -DPIC -o .libs/dtrsm.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o scopy.lo ../../../../src/gmxlib/gmx_blas/scopy.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/scopy.c  -fPIC -DPIC -o .libs/scopy.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o sasum.lo ../../../../src/gmxlib/gmx_blas/sasum.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/sasum.c  -fPIC -DPIC -o .libs/sasum.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o sger.lo ../../../../src/gmxlib/gmx_blas/sger.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/sger.c  -fPIC -DPIC -o .libs/sger.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dsyr2k.lo ../../../../src/gmxlib/gmx_blas/dsyr2k.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dsyr2k.c  -fPIC -DPIC -o .libs/dsyr2k.o
../../../../src/gmxlib/gmx_blas/dsyr2k.c: In function 'dsyr2k_':
../../../../src/gmxlib/gmx_blas/dsyr2k.c:23:7: warning: variable 'nrowa' set but not used [-Wunused-but-set-variable]
   int nrowa;
       ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o srot.lo ../../../../src/gmxlib/gmx_blas/srot.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/srot.c  -fPIC -DPIC -o .libs/srot.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o sswap.lo ../../../../src/gmxlib/gmx_blas/sswap.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/sswap.c  -fPIC -DPIC -o .libs/sswap.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dsymv.lo ../../../../src/gmxlib/gmx_blas/dsymv.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dsymv.c  -fPIC -DPIC -o .libs/dsymv.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o ssyr2.lo ../../../../src/gmxlib/gmx_blas/ssyr2.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/ssyr2.c  -fPIC -DPIC -o .libs/ssyr2.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dtrmv.lo ../../../../src/gmxlib/gmx_blas/dtrmv.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dtrmv.c  -fPIC -DPIC -o .libs/dtrmv.o
../../../../src/gmxlib/gmx_blas/dtrmv.c: In function 'dtrmv_':
../../../../src/gmxlib/gmx_blas/dtrmv.c:18:29: warning: variable 'info' set but not used [-Wunused-but-set-variable]
     int i__, j, ix, jx, kx, info;
                             ^~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o saxpy.lo ../../../../src/gmxlib/gmx_blas/saxpy.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/saxpy.c  -fPIC -DPIC -o .libs/saxpy.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o sdot.lo ../../../../src/gmxlib/gmx_blas/sdot.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/sdot.c  -fPIC -DPIC -o .libs/sdot.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o sgemm.lo ../../../../src/gmxlib/gmx_blas/sgemm.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/sgemm.c  -fPIC -DPIC -o .libs/sgemm.o
../../../../src/gmxlib/gmx_blas/sgemm.c: In function 'sgemm_':
../../../../src/gmxlib/gmx_blas/sgemm.c:26:19: warning: variable 'nrowb' set but not used [-Wunused-but-set-variable]
   int nrowa,ncola,nrowb;
                   ^~~~~
../../../../src/gmxlib/gmx_blas/sgemm.c:26:13: warning: variable 'ncola' set but not used [-Wunused-but-set-variable]
   int nrowa,ncola,nrowb;
             ^~~~~
../../../../src/gmxlib/gmx_blas/sgemm.c:26:7: warning: variable 'nrowa' set but not used [-Wunused-but-set-variable]
   int nrowa,ncola,nrowb;
       ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o strsm.lo ../../../../src/gmxlib/gmx_blas/strsm.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/strsm.c  -fPIC -DPIC -o .libs/strsm.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o snrm2.lo ../../../../src/gmxlib/gmx_blas/snrm2.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/snrm2.c  -fPIC -DPIC -o .libs/snrm2.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o sscal.lo ../../../../src/gmxlib/gmx_blas/sscal.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/sscal.c  -fPIC -DPIC -o .libs/sscal.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o strmm.lo ../../../../src/gmxlib/gmx_blas/strmm.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/strmm.c  -fPIC -DPIC -o .libs/strmm.o
../../../../src/gmxlib/gmx_blas/strmm.c: In function 'strmm_':
../../../../src/gmxlib/gmx_blas/strmm.c:31:9: warning: variable 'nrowa' set but not used [-Wunused-but-set-variable]
     int nrowa;
         ^~~~~
../../../../src/gmxlib/gmx_blas/strmm.c:28:20: warning: variable 'info' set but not used [-Wunused-but-set-variable]
     int i__, j, k, info;
                    ^~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o sgemv.lo ../../../../src/gmxlib/gmx_blas/sgemv.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/sgemv.c  -fPIC -DPIC -o .libs/sgemv.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o isamax.lo ../../../../src/gmxlib/gmx_blas/isamax.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/isamax.c  -fPIC -DPIC -o .libs/isamax.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o ssymv.lo ../../../../src/gmxlib/gmx_blas/ssymv.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/ssymv.c  -fPIC -DPIC -o .libs/ssymv.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o strmv.lo ../../../../src/gmxlib/gmx_blas/strmv.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/strmv.c  -fPIC -DPIC -o .libs/strmv.o
../../../../src/gmxlib/gmx_blas/strmv.c: In function 'strmv_':
../../../../src/gmxlib/gmx_blas/strmv.c:18:29: warning: variable 'info' set but not used [-Wunused-but-set-variable]
     int i__, j, ix, jx, kx, info;
                             ^~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o ssyr2k.lo ../../../../src/gmxlib/gmx_blas/ssyr2k.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/ssyr2k.c  -fPIC -DPIC -o .libs/ssyr2k.o
../../../../src/gmxlib/gmx_blas/ssyr2k.c: In function 'ssyr2k_':
../../../../src/gmxlib/gmx_blas/ssyr2k.c:22:7: warning: variable 'nrowa' set but not used [-Wunused-but-set-variable]
   int nrowa;
       ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas'
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/bin/sh ../../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o libblas.la  dasum.lo dcopy.lo dgemm.lo dger.lo drot.lo dswap.lo dsyr2.lo dtrmm.lo dtrsm.lo daxpy.lo ddot.lo dgemv.lo dnrm2.lo dscal.lo dsymv.lo dsyr2k.lo dtrmv.lo idamax.lo sasum.lo scopy.lo sgemm.lo sger.lo srot.lo sswap.lo ssyr2.lo strmm.lo strsm.lo saxpy.lo sdot.lo sgemv.lo snrm2.lo sscal.lo ssymv.lo ssyr2k.lo strmv.lo isamax.lo  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
ar cru .libs/libblas.a .libs/dasum.o .libs/dcopy.o .libs/dgemm.o .libs/dger.o .libs/drot.o .libs/dswap.o .libs/dsyr2.o .libs/dtrmm.o .libs/dtrsm.o .libs/daxpy.o .libs/ddot.o .libs/dgemv.o .libs/dnrm2.o .libs/dscal.o .libs/dsymv.o .libs/dsyr2k.o .libs/dtrmv.o .libs/idamax.o .libs/sasum.o .libs/scopy.o .libs/sgemm.o .libs/sger.o .libs/srot.o .libs/sswap.o .libs/ssyr2.o .libs/strmm.o .libs/strsm.o .libs/saxpy.o .libs/sdot.o .libs/sgemv.o .libs/snrm2.o .libs/sscal.o .libs/ssymv.o .libs/ssyr2k.o .libs/strmv.o .libs/isamax.o
ranlib .libs/libblas.a
creating libblas.la
(cd .libs && rm -f libblas.la && ln -s ../libblas.la libblas.la)
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas'
Making all in gmx_lapack
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dlasq6.lo ../../../../src/gmxlib/gmx_lapack/dlasq6.c
mkdir .libs
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasq6.c  -fPIC -DPIC -o .libs/dlasq6.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dlamrg.lo ../../../../src/gmxlib/gmx_lapack/dlamrg.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlamrg.c  -fPIC -DPIC -o .libs/dlamrg.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dgetf2.lo ../../../../src/gmxlib/gmx_lapack/dgetf2.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dgetf2.c  -fPIC -DPIC -o .libs/dgetf2.o
../../../../src/gmxlib/gmx_lapack/dgetf2.c: In function 'dgetf2_':
../../../../src/gmxlib/gmx_lapack/dgetf2.c:17:10: warning: variable 'one' set but not used [-Wunused-but-set-variable]
   double one,minusone;
          ^~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dlarnv.lo ../../../../src/gmxlib/gmx_lapack/dlarnv.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlarnv.c  -fPIC -DPIC -o .libs/dlarnv.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dlasda.lo ../../../../src/gmxlib/gmx_lapack/dlasda.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasda.c  -fPIC -DPIC -o .libs/dlasda.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dorgl2.lo ../../../../src/gmxlib/gmx_lapack/dorgl2.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dorgl2.c  -fPIC -DPIC -o .libs/dorgl2.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dlasd0.lo ../../../../src/gmxlib/gmx_lapack/dlasd0.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasd0.c  -fPIC -DPIC -o .libs/dlasd0.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dormqr.lo ../../../../src/gmxlib/gmx_lapack/dormqr.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dormqr.c  -fPIC -DPIC -o .libs/dormqr.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dgetrf.lo ../../../../src/gmxlib/gmx_lapack/dgetrf.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dgetrf.c  -fPIC -DPIC -o .libs/dgetrf.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dtrtri.lo ../../../../src/gmxlib/gmx_lapack/dtrtri.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dtrtri.c  -fPIC -DPIC -o .libs/dtrtri.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dbdsdc.lo ../../../../src/gmxlib/gmx_lapack/dbdsdc.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dbdsdc.c  -fPIC -DPIC -o .libs/dbdsdc.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dlange.lo ../../../../src/gmxlib/gmx_lapack/dlange.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlange.c  -fPIC -DPIC -o .libs/dlange.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dlasd1.lo ../../../../src/gmxlib/gmx_lapack/dlasd1.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasd1.c  -fPIC -DPIC -o .libs/dlasd1.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dorglq.lo ../../../../src/gmxlib/gmx_lapack/dorglq.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dorglq.c  -fPIC -DPIC -o .libs/dorglq.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dlasdq.lo ../../../../src/gmxlib/gmx_lapack/dlasdq.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasdq.c  -fPIC -DPIC -o .libs/dlasdq.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dormtr.lo ../../../../src/gmxlib/gmx_lapack/dormtr.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dormtr.c  -fPIC -DPIC -o .libs/dormtr.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dgebd2.lo ../../../../src/gmxlib/gmx_lapack/dgebd2.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dgebd2.c  -fPIC -DPIC -o .libs/dgebd2.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dlasr.lo ../../../../src/gmxlib/gmx_lapack/dlasr.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasr.c  -fPIC -DPIC -o .libs/dlasr.o
../../../../src/gmxlib/gmx_lapack/dlasr.c: In function 'dlasr_':
../../../../src/gmxlib/gmx_lapack/dlasr.c:21:17: warning: variable 'info' set but not used [-Wunused-but-set-variable]
     int i__, j, info;
                 ^~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dlanst.lo ../../../../src/gmxlib/gmx_lapack/dlanst.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlanst.c  -fPIC -DPIC -o .libs/dlanst.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dlasdt.lo ../../../../src/gmxlib/gmx_lapack/dlasdt.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasdt.c  -fPIC -DPIC -o .libs/dlasdt.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasrt.c  -fPIC -DPIC -o .libs/dlasrt.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dgebrd.lo ../../../../src/gmxlib/gmx_lapack/dgebrd.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dgebrd.c  -fPIC -DPIC -o .libs/dgebrd.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dlabrd.lo ../../../../src/gmxlib/gmx_lapack/dlabrd.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlabrd.c  -fPIC -DPIC -o .libs/dlabrd.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dbdsqr.lo ../../../../src/gmxlib/gmx_lapack/dbdsqr.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dbdsqr.c  -fPIC -DPIC -o .libs/dbdsqr.o
../../../../src/gmxlib/gmx_lapack/dbdsqr.c: In function 'dbdsqr_':
../../../../src/gmxlib/gmx_lapack/dbdsqr.c:61:12: warning: unused variable 'ftmp' [-Wunused-variable]
     double ftmp;
            ^~~~
../../../../src/gmxlib/gmx_lapack/dbdsqr.c:59:12: warning: variable 'sminlo' set but not used [-Wunused-but-set-variable]
     double sminlo, tolmul;
            ^~~~~~
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dorgqr.c  -fPIC -DPIC -o .libs/dorgqr.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dlasd2.lo ../../../../src/gmxlib/gmx_lapack/dlasd2.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasd2.c  -fPIC -DPIC -o .libs/dlasd2.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlapy2.c  -fPIC -DPIC -o .libs/dlapy2.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlacpy.c  -fPIC -DPIC -o .libs/dlacpy.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dsytrd.c  -fPIC -DPIC -o .libs/dsytrd.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlassq.c  -fPIC -DPIC -o .libs/dlassq.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlaset.c  -fPIC -DPIC -o .libs/dlaset.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dgetrs.c  -fPIC -DPIC -o .libs/dgetrs.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dorm2l.c  -fPIC -DPIC -o .libs/dorm2l.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dgelq2.c  -fPIC -DPIC -o .libs/dgelq2.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dstebz.c  -fPIC -DPIC -o .libs/dstebz.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlae2.c  -fPIC -DPIC -o .libs/dlae2.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasq1.c  -fPIC -DPIC -o .libs/dlasq1.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasd3.c  -fPIC -DPIC -o .libs/dlasd3.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dorm2r.c  -fPIC -DPIC -o .libs/dorm2r.o
../../../../src/gmxlib/gmx_lapack/dorm2r.c: In function 'dorm2r_':
../../../../src/gmxlib/gmx_lapack/dorm2r.c:19:42: warning: variable 'nq' set but not used [-Wunused-but-set-variable]
     int i__, i1, i2, i3, ic, jc, mi, ni, nq;
                                          ^~
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dtrti2.c  -fPIC -DPIC -o .libs/dtrti2.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dgelqf.c  -fPIC -DPIC -o .libs/dgelqf.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dgetri.c  -fPIC -DPIC -o .libs/dgetri.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasv2.c  -fPIC -DPIC -o .libs/dlasv2.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dstein.c  -fPIC -DPIC -o .libs/dstein.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlarf.c  -fPIC -DPIC -o .libs/dlarf.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasd5.c  -fPIC -DPIC -o .libs/dlasd5.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlaebz.c  -fPIC -DPIC -o .libs/dlaebz.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dgeqr2.c  -fPIC -DPIC -o .libs/dgeqr2.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dormbr.c  -fPIC -DPIC -o .libs/dormbr.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasq2.c  -fPIC -DPIC -o .libs/dlasq2.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dsterf.c  -fPIC -DPIC -o .libs/dsterf.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasd4.c  -fPIC -DPIC -o .libs/dlasd4.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasd6.c  -fPIC -DPIC -o .libs/dlasd6.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlaruv.c  -fPIC -DPIC -o .libs/dlaruv.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dstevr.c  -fPIC -DPIC -o .libs/dstevr.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dorml2.c  -fPIC -DPIC -o .libs/dorml2.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlaed6.c  -fPIC -DPIC -o .libs/dlaed6.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasq3.c  -fPIC -DPIC -o .libs/dlasq3.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlas2.c  -fPIC -DPIC -o .libs/dlas2.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlarfb.c  -fPIC -DPIC -o .libs/dlarfb.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlarfg.c  -fPIC -DPIC -o .libs/dlarfg.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dgeqrf.lo ../../../../src/gmxlib/gmx_lapack/dgeqrf.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dgeqrf.c  -fPIC -DPIC -o .libs/dgeqrf.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dlagtf.lo ../../../../src/gmxlib/gmx_lapack/dlagtf.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlagtf.c  -fPIC -DPIC -o .libs/dlagtf.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dorg2r.lo ../../../../src/gmxlib/gmx_lapack/dorg2r.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dorg2r.c  -fPIC -DPIC -o .libs/dorg2r.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dormlq.lo ../../../../src/gmxlib/gmx_lapack/dormlq.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dormlq.c  -fPIC -DPIC -o .libs/dormlq.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dlasd7.lo ../../../../src/gmxlib/gmx_lapack/dlasd7.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasd7.c  -fPIC -DPIC -o .libs/dlasd7.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dsytd2.lo ../../../../src/gmxlib/gmx_lapack/dsytd2.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dsytd2.c  -fPIC -DPIC -o .libs/dsytd2.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dlasq4.lo ../../../../src/gmxlib/gmx_lapack/dlasq4.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasq4.c  -fPIC -DPIC -o .libs/dlasq4.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dlascl.lo ../../../../src/gmxlib/gmx_lapack/dlascl.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlascl.c  -fPIC -DPIC -o .libs/dlascl.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dorgbr.lo ../../../../src/gmxlib/gmx_lapack/dorgbr.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dorgbr.c  -fPIC -DPIC -o .libs/dorgbr.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dlasq5.lo ../../../../src/gmxlib/gmx_lapack/dlasq5.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasq5.c  -fPIC -DPIC -o .libs/dlasq5.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dormql.lo ../../../../src/gmxlib/gmx_lapack/dormql.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dormql.c  -fPIC -DPIC -o .libs/dormql.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dlaev2.lo ../../../../src/gmxlib/gmx_lapack/dlaev2.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlaev2.c  -fPIC -DPIC -o .libs/dlaev2.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dlarft.lo ../../../../src/gmxlib/gmx_lapack/dlarft.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlarft.c  -fPIC -DPIC -o .libs/dlarft.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dsyevr.lo ../../../../src/gmxlib/gmx_lapack/dsyevr.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dsyevr.c  -fPIC -DPIC -o .libs/dsyevr.o
../../../../src/gmxlib/gmx_lapack/dsyevr.c: In function 'dsyevr_':
../../../../src/gmxlib/gmx_lapack/dsyevr.c:36:12: warning: variable 'abstll' set but not used [-Wunused-but-set-variable]
     double abstll, bignum;
            ^~~~~~
../../../../src/gmxlib/gmx_lapack/dsyevr.c:33:17: warning: variable 'ieeeok' set but not used [-Wunused-but-set-variable]
     int iscale, ieeeok, indibl, indifl;
                 ^~~~~~
../../../../src/gmxlib/gmx_lapack/dsyevr.c:21:22: warning: variable 'vuu' set but not used [-Wunused-but-set-variable]
     double eps, vll, vuu, tmp1;
                      ^~~
../../../../src/gmxlib/gmx_lapack/dsyevr.c:21:17: warning: variable 'vll' set but not used [-Wunused-but-set-variable]
     double eps, vll, vuu, tmp1;
                 ^~~
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dlagts.lo ../../../../src/gmxlib/gmx_lapack/dlagts.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlagts.c  -fPIC -DPIC -o .libs/dlagts.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dlansy.lo ../../../../src/gmxlib/gmx_lapack/dlansy.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlansy.c  -fPIC -DPIC -o .libs/dlansy.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dlasd8.lo ../../../../src/gmxlib/gmx_lapack/dlasd8.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasd8.c  -fPIC -DPIC -o .libs/dlasd8.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dlasrt2.lo ../../../../src/gmxlib/gmx_lapack/dlasrt2.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasrt2.c  -fPIC -DPIC -o .libs/dlasrt2.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dgesdd.lo ../../../../src/gmxlib/gmx_lapack/dgesdd.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dgesdd.c  -fPIC -DPIC -o .libs/dgesdd.o
../../../../src/gmxlib/gmx_lapack/dgesdd.c: In function 'dgesdd_':
../../../../src/gmxlib/gmx_lapack/dgesdd.c:40:9: warning: variable 'wntqas' set but not used [-Wunused-but-set-variable]
     int wntqas, lquery;
         ^~~~~~
../../../../src/gmxlib/gmx_lapack/dgesdd.c:38:9: warning: variable 'minwrk' set but not used [-Wunused-but-set-variable]
     int minwrk, ldwrku, maxwrk, ldwkvt;
         ^~~~~~
../../../../src/gmxlib/gmx_lapack/dgesdd.c:35:16: warning: variable 'wntqo' set but not used [-Wunused-but-set-variable]
     int wntqn, wntqo, wntqs;
                ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dlarrfx.lo ../../../../src/gmxlib/gmx_lapack/dlarrfx.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlarrfx.c  -fPIC -DPIC -o .libs/dlarrfx.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dlarrbx.lo ../../../../src/gmxlib/gmx_lapack/dlarrbx.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlarrbx.c  -fPIC -DPIC -o .libs/dlarrbx.o
../../../../src/gmxlib/gmx_lapack/dlarrbx.c: In function 'dlarrbx_':
../../../../src/gmxlib/gmx_lapack/dlarrbx.c:36:33: warning: variable 'error' set but not used [-Wunused-but-set-variable]
     double right, width, dplus, error;
                                 ^~~~~
../../../../src/gmxlib/gmx_lapack/dlarrbx.c:34:12: warning: variable 'eps' set but not used [-Wunused-but-set-variable]
     double eps, tmp, left;
            ^~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dlar1vx.lo ../../../../src/gmxlib/gmx_lapack/dlar1vx.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlar1vx.c  -fPIC -DPIC -o .libs/dlar1vx.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o sgetf2.lo ../../../../src/gmxlib/gmx_lapack/sgetf2.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sgetf2.c  -fPIC -DPIC -o .libs/sgetf2.o
../../../../src/gmxlib/gmx_lapack/sgetf2.c: In function 'sgetf2_':
../../../../src/gmxlib/gmx_lapack/sgetf2.c:17:9: warning: variable 'one' set but not used [-Wunused-but-set-variable]
   float one,minusone;
         ^~~
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slarnv.c  -fPIC -DPIC -o .libs/slarnv.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sbdsdc.c  -fPIC -DPIC -o .libs/sbdsdc.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slamrg.c  -fPIC -DPIC -o .libs/slamrg.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasq6.c  -fPIC -DPIC -o .libs/slasq6.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlarrvx.c  -fPIC -DPIC -o .libs/dlarrvx.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sorgl2.c  -fPIC -DPIC -o .libs/sorgl2.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasd0.c  -fPIC -DPIC -o .libs/slasd0.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o sormqr.lo ../../../../src/gmxlib/gmx_lapack/sormqr.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sormqr.c  -fPIC -DPIC -o .libs/sormqr.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dsteqr.lo ../../../../src/gmxlib/gmx_lapack/dsteqr.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dsteqr.c  -fPIC -DPIC -o .libs/dsteqr.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/ssytrd.c  -fPIC -DPIC -o .libs/ssytrd.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sgetrf.c  -fPIC -DPIC -o .libs/sgetrf.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasd1.c  -fPIC -DPIC -o .libs/slasd1.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slange.c  -fPIC -DPIC -o .libs/slange.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasda.c  -fPIC -DPIC -o .libs/slasda.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasdq.c  -fPIC -DPIC -o .libs/slasdq.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slanst.c  -fPIC -DPIC -o .libs/slanst.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sgebd2.c  -fPIC -DPIC -o .libs/sgebd2.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sorglq.c  -fPIC -DPIC -o .libs/sorglq.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasr.c  -fPIC -DPIC -o .libs/slasr.o
../../../../src/gmxlib/gmx_lapack/slasr.c: In function 'slasr_':
../../../../src/gmxlib/gmx_lapack/slasr.c:21:17: warning: variable 'info' set but not used [-Wunused-but-set-variable]
     int i__, j, info;
                 ^~~~
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slabrd.c  -fPIC -DPIC -o .libs/slabrd.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sbdsqr.c  -fPIC -DPIC -o .libs/sbdsqr.o
../../../../src/gmxlib/gmx_lapack/sbdsqr.c: In function 'sbdsqr_':
../../../../src/gmxlib/gmx_lapack/sbdsqr.c:61:11: warning: unused variable 'ftmp' [-Wunused-variable]
     float ftmp;
           ^~~~
../../../../src/gmxlib/gmx_lapack/sbdsqr.c:59:11: warning: variable 'sminlo' set but not used [-Wunused-but-set-variable]
     float sminlo, tolmul;
           ^~~~~~
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasdt.c  -fPIC -DPIC -o .libs/slasdt.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sgetrs.c  -fPIC -DPIC -o .libs/sgetrs.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slapy2.c  -fPIC -DPIC -o .libs/slapy2.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sgebrd.c  -fPIC -DPIC -o .libs/sgebrd.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slacpy.c  -fPIC -DPIC -o .libs/slacpy.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasrt.c  -fPIC -DPIC -o .libs/slasrt.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasd2.c  -fPIC -DPIC -o .libs/slasd2.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sorgqr.c  -fPIC -DPIC -o .libs/sorgqr.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slaset.c  -fPIC -DPIC -o .libs/slaset.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sgelq2.c  -fPIC -DPIC -o .libs/sgelq2.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sorm2l.c  -fPIC -DPIC -o .libs/sorm2l.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sgetri.c  -fPIC -DPIC -o .libs/sgetri.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasd3.c  -fPIC -DPIC -o .libs/slasd3.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/strti2.c  -fPIC -DPIC -o .libs/strti2.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasq1.c  -fPIC -DPIC -o .libs/slasq1.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o sorm2r.lo ../../../../src/gmxlib/gmx_lapack/sorm2r.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sorm2r.c  -fPIC -DPIC -o .libs/sorm2r.o
../../../../src/gmxlib/gmx_lapack/sorm2r.c: In function 'sorm2r_':
../../../../src/gmxlib/gmx_lapack/sorm2r.c:19:42: warning: variable 'nq' set but not used [-Wunused-but-set-variable]
     int i__, i1, i2, i3, ic, jc, mi, ni, nq;
                                          ^~
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/strtri.c  -fPIC -DPIC -o .libs/strtri.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sgelqf.c  -fPIC -DPIC -o .libs/sgelqf.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slarf.c  -fPIC -DPIC -o .libs/slarf.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slartg.c  -fPIC -DPIC -o .libs/slartg.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasv2.c  -fPIC -DPIC -o .libs/slasv2.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasd5.c  -fPIC -DPIC -o .libs/slasd5.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sstein.c  -fPIC -DPIC -o .libs/sstein.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slaswp.c  -fPIC -DPIC -o .libs/slaswp.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sgeqr2.c  -fPIC -DPIC -o .libs/sgeqr2.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slaebz.c  -fPIC -DPIC -o .libs/slaebz.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sormbr.c  -fPIC -DPIC -o .libs/sormbr.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slaruv.c  -fPIC -DPIC -o .libs/slaruv.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slaed6.c  -fPIC -DPIC -o .libs/slaed6.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasq2.c  -fPIC -DPIC -o .libs/slasq2.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/ssterf.c  -fPIC -DPIC -o .libs/ssterf.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasd6.c  -fPIC -DPIC -o .libs/slasd6.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasq3.c  -fPIC -DPIC -o .libs/slasq3.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasd4.c  -fPIC -DPIC -o .libs/slasd4.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sstevr.c  -fPIC -DPIC -o .libs/sstevr.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sorml2.c  -fPIC -DPIC -o .libs/sorml2.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slarfb.c  -fPIC -DPIC -o .libs/slarfb.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slarfg.c  -fPIC -DPIC -o .libs/slarfg.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slatrd.c  -fPIC -DPIC -o .libs/slatrd.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sgeqrf.c  -fPIC -DPIC -o .libs/sgeqrf.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slagtf.c  -fPIC -DPIC -o .libs/slagtf.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slas2.c  -fPIC -DPIC -o .libs/slas2.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sorg2r.c  -fPIC -DPIC -o .libs/sorg2r.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasq4.c  -fPIC -DPIC -o .libs/slasq4.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/ssytd2.c  -fPIC -DPIC -o .libs/ssytd2.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o sormlq.lo ../../../../src/gmxlib/gmx_lapack/sormlq.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sormlq.c  -fPIC -DPIC -o .libs/sormlq.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o slarft.lo ../../../../src/gmxlib/gmx_lapack/slarft.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slarft.c  -fPIC -DPIC -o .libs/slarft.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o slascl.lo ../../../../src/gmxlib/gmx_lapack/slascl.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slascl.c  -fPIC -DPIC -o .libs/slascl.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o slagts.lo ../../../../src/gmxlib/gmx_lapack/slagts.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slagts.c  -fPIC -DPIC -o .libs/slagts.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o sorgbr.lo ../../../../src/gmxlib/gmx_lapack/sorgbr.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sorgbr.c  -fPIC -DPIC -o .libs/sorgbr.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o slasd7.lo ../../../../src/gmxlib/gmx_lapack/slasd7.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasd7.c  -fPIC -DPIC -o .libs/slasd7.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o sgesdd.lo ../../../../src/gmxlib/gmx_lapack/sgesdd.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sgesdd.c  -fPIC -DPIC -o .libs/sgesdd.o
../../../../src/gmxlib/gmx_lapack/sgesdd.c: In function 'sgesdd_':
../../../../src/gmxlib/gmx_lapack/sgesdd.c:40:9: warning: variable 'wntqas' set but not used [-Wunused-but-set-variable]
     int wntqas, lquery;
         ^~~~~~
../../../../src/gmxlib/gmx_lapack/sgesdd.c:38:9: warning: variable 'minwrk' set but not used [-Wunused-but-set-variable]
     int minwrk, ldwrku, maxwrk, ldwkvt;
         ^~~~~~
../../../../src/gmxlib/gmx_lapack/sgesdd.c:35:16: warning: variable 'wntqo' set but not used [-Wunused-but-set-variable]
     int wntqn, wntqo, wntqs;
                ^~~~~
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o slasq5.lo ../../../../src/gmxlib/gmx_lapack/slasq5.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasq5.c  -fPIC -DPIC -o .libs/slasq5.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o slaev2.lo ../../../../src/gmxlib/gmx_lapack/slaev2.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slaev2.c  -fPIC -DPIC -o .libs/slaev2.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o sormql.lo ../../../../src/gmxlib/gmx_lapack/sormql.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sormql.c  -fPIC -DPIC -o .libs/sormql.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o slasd8.lo ../../../../src/gmxlib/gmx_lapack/slasd8.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasd8.c  -fPIC -DPIC -o .libs/slasd8.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o slasrt2.lo ../../../../src/gmxlib/gmx_lapack/slasrt2.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasrt2.c  -fPIC -DPIC -o .libs/slasrt2.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o ssyevr.lo ../../../../src/gmxlib/gmx_lapack/ssyevr.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/ssyevr.c  -fPIC -DPIC -o .libs/ssyevr.o
../../../../src/gmxlib/gmx_lapack/ssyevr.c: In function 'ssyevr_':
../../../../src/gmxlib/gmx_lapack/ssyevr.c:36:11: warning: variable 'abstll' set but not used [-Wunused-but-set-variable]
     float abstll, bignum;
           ^~~~~~
../../../../src/gmxlib/gmx_lapack/ssyevr.c:33:17: warning: variable 'ieeeok' set but not used [-Wunused-but-set-variable]
     int iscale, ieeeok, indibl, indifl;
                 ^~~~~~
../../../../src/gmxlib/gmx_lapack/ssyevr.c:21:21: warning: variable 'vuu' set but not used [-Wunused-but-set-variable]
     float eps, vll, vuu, tmp1;
                     ^~~
../../../../src/gmxlib/gmx_lapack/ssyevr.c:21:16: warning: variable 'vll' set but not used [-Wunused-but-set-variable]
     float eps, vll, vuu, tmp1;
                ^~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o slansy.lo ../../../../src/gmxlib/gmx_lapack/slansy.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slansy.c  -fPIC -DPIC -o .libs/slansy.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o slar1vx.lo ../../../../src/gmxlib/gmx_lapack/slar1vx.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slar1vx.c  -fPIC -DPIC -o .libs/slar1vx.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o slarrfx.lo ../../../../src/gmxlib/gmx_lapack/slarrfx.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slarrfx.c  -fPIC -DPIC -o .libs/slarrfx.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o ilasrt2.lo ../../../../src/gmxlib/gmx_lapack/ilasrt2.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/ilasrt2.c  -fPIC -DPIC -o .libs/ilasrt2.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o ssteqr.lo ../../../../src/gmxlib/gmx_lapack/ssteqr.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/ssteqr.c  -fPIC -DPIC -o .libs/ssteqr.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o slarrbx.lo ../../../../src/gmxlib/gmx_lapack/slarrbx.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slarrbx.c  -fPIC -DPIC -o .libs/slarrbx.o
../../../../src/gmxlib/gmx_lapack/slarrbx.c: In function 'slarrbx_':
../../../../src/gmxlib/gmx_lapack/slarrbx.c:36:32: warning: variable 'error' set but not used [-Wunused-but-set-variable]
     float right, width, dplus, error;
                                ^~~~~
../../../../src/gmxlib/gmx_lapack/slarrbx.c:34:11: warning: variable 'eps' set but not used [-Wunused-but-set-variable]
     float eps, tmp, left;
           ^~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o slarrex.lo ../../../../src/gmxlib/gmx_lapack/slarrex.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slarrex.c  -fPIC -DPIC -o .libs/slarrex.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o slarrvx.lo ../../../../src/gmxlib/gmx_lapack/slarrvx.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slarrvx.c  -fPIC -DPIC -o .libs/slarrvx.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack'
/bin/sh ../../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o liblapack.la  dbdsdc.lo dgetf2.lo dlamrg.lo dlarnv.lo dlasd0.lo dlasda.lo dlasq6.lo dorgl2.lo dormqr.lo dbdsqr.lo dgetrf.lo dlange.lo dlasd1.lo dtrtri.lo dlasdq.lo dlasr.lo dorglq.lo dormtr.lo dgebd2.lo dlabrd.lo dlanst.lo dlasd2.lo dlasdt.lo dlasrt.lo dorgqr.lo dstebz.lo dgebrd.lo dsytrd.lo dlacpy.lo dlapy2.lo dlasd3.lo dlaset.lo dlassq.lo dorm2l.lo dgetrs.lo dstegr.lo dgelq2.lo dlae2.lo dlasd4.lo dlasq1.lo dtrti2.lo dgetri.lo dlasv2.lo dorm2r.lo dstein.lo dgelqf.lo dlaebz.lo dlarf.lo dlartg.lo dlasd5.lo dlasq2.lo dlaswp.lo dormbr.lo dsterf.lo dgeqr2.lo dlaed6.lo dlarfb.lo dlaruv.lo dlasd6.lo dlasq3.lo dlatrd.lo dorml2.lo dstevr.lo dgeqrf.lo dlagtf.lo dlarfg.lo dlas2.lo dlasd7.lo dlasq4.lo dorg2r.lo dormlq.lo dsytd2.lo dgesdd.lo dlagts.lo dlarft.lo dlascl.lo dlasd8.lo dlasq5.lo dorgbr.lo dormql.lo dlaev2.lo dsteqr.lo dsyevr.lo dlasrt2.lo dlansy.lo dlar1vx.lo dlarrbx.lo dlarrex.lo dlarrfx.lo dlarrvx.lo sbdsdc.lo sgetf2.lo slamrg.lo slarnv.lo slasd0.lo slasda.lo slasq6.lo sorgl2.lo sormqr.lo sbdsqr.lo sgetrf.lo slange.lo slasd1.lo ssytrd.lo slasdq.lo slasr.lo sorglq.lo sormtr.lo sgebd2.lo slabrd.lo slanst.lo slasd2.lo slasdt.lo slasrt.lo sorgqr.lo sstebz.lo sgebrd.lo sgetrs.lo slacpy.lo slapy2.lo slasd3.lo slaset.lo slassq.lo sorm2l.lo sgetri.lo sstegr.lo sgelq2.lo slae2.lo slasd4.lo slasq1.lo strti2.lo strtri.lo slasv2.lo sorm2r.lo sstein.lo sgelqf.lo slaebz.lo slarf.lo slartg.lo slasd5.lo slasq2.lo slaswp.lo sormbr.lo ssterf.lo sgeqr2.lo slaed6.lo slarfb.lo slaruv.lo slasd6.lo slasq3.lo slatrd.lo sorml2.lo sstevr.lo sgeqrf.lo slagtf.lo slarfg.lo slas2.lo slasd7.lo slasq4.lo sorg2r.lo sormlq.lo ssytd2.lo sgesdd.lo slagts.lo slarft.lo slascl.lo slasd8.lo slasq5.lo sorgbr.lo sormql.lo slaev2.lo ssteqr.lo ssyevr.lo slasrt2.lo slansy.lo slar1vx.lo slarrbx.lo slarrex.lo slarrfx.lo slarrvx.lo ilasrt2.lo  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
ar cru .libs/liblapack.a .libs/dbdsdc.o .libs/dgetf2.o .libs/dlamrg.o .libs/dlarnv.o .libs/dlasd0.o .libs/dlasda.o .libs/dlasq6.o .libs/dorgl2.o .libs/dormqr.o .libs/dbdsqr.o .libs/dgetrf.o .libs/dlange.o .libs/dlasd1.o .libs/dtrtri.o .libs/dlasdq.o .libs/dlasr.o .libs/dorglq.o .libs/dormtr.o .libs/dgebd2.o .libs/dlabrd.o .libs/dlanst.o .libs/dlasd2.o .libs/dlasdt.o .libs/dlasrt.o .libs/dorgqr.o .libs/dstebz.o .libs/dgebrd.o .libs/dsytrd.o .libs/dlacpy.o .libs/dlapy2.o .libs/dlasd3.o .libs/dlaset.o .libs/dlassq.o .libs/dorm2l.o .libs/dgetrs.o .libs/dstegr.o .libs/dgelq2.o .libs/dlae2.o .libs/dlasd4.o .libs/dlasq1.o .libs/dtrti2.o .libs/dgetri.o .libs/dlasv2.o .libs/dorm2r.o .libs/dstein.o .libs/dgelqf.o .libs/dlaebz.o .libs/dlarf.o .libs/dlartg.o .libs/dlasd5.o .libs/dlasq2.o .libs/dlaswp.o .libs/dormbr.o .libs/dsterf.o .libs/dgeqr2.o .libs/dlaed6.o .libs/dlarfb.o .libs/dlaruv.o .libs/dlasd6.o .libs/dlasq3.o .libs/dlatrd.o .libs/dorml2.o .libs/dstevr.o .libs/dgeqrf.o .libs/dlagtf.o .libs/dlarfg.o .libs/dlas2.o .libs/dlasd7.o .libs/dlasq4.o .libs/dorg2r.o .libs/dormlq.o .libs/dsytd2.o .libs/dgesdd.o .libs/dlagts.o .libs/dlarft.o .libs/dlascl.o .libs/dlasd8.o .libs/dlasq5.o .libs/dorgbr.o .libs/dormql.o .libs/dlaev2.o .libs/dsteqr.o .libs/dsyevr.o .libs/dlasrt2.o .libs/dlansy.o .libs/dlar1vx.o .libs/dlarrbx.o .libs/dlarrex.o .libs/dlarrfx.o .libs/dlarrvx.o .libs/sbdsdc.o .libs/sgetf2.o .libs/slamrg.o .libs/slarnv.o .libs/slasd0.o .libs/slasda.o .libs/slasq6.o .libs/sorgl2.o .libs/sormqr.o .libs/sbdsqr.o .libs/sgetrf.o .libs/slange.o .libs/slasd1.o .libs/ssytrd.o .libs/slasdq.o .libs/slasr.o .libs/sorglq.o .libs/sormtr.o .libs/sgebd2.o .libs/slabrd.o .libs/slanst.o .libs/slasd2.o .libs/slasdt.o .libs/slasrt.o .libs/sorgqr.o .libs/sstebz.o .libs/sgebrd.o .libs/sgetrs.o .libs/slacpy.o .libs/slapy2.o .libs/slasd3.o .libs/slaset.o .libs/slassq.o .libs/sorm2l.o .libs/sgetri.o .libs/sstegr.o .libs/sgelq2.o .libs/slae2.o .libs/slasd4.o .libs/slasq1.o .libs/strti2.o .libs/strtri.o .libs/slasv2.o .libs/sorm2r.o .libs/sstein.o .libs/sgelqf.o .libs/slaebz.o .libs/slarf.o .libs/slartg.o .libs/slasd5.o .libs/slasq2.o .libs/slaswp.o .libs/sormbr.o .libs/ssterf.o .libs/sgeqr2.o .libs/slaed6.o .libs/slarfb.o .libs/slaruv.o .libs/slasd6.o .libs/slasq3.o .libs/slatrd.o .libs/sorml2.o .libs/sstevr.o .libs/sgeqrf.o .libs/slagtf.o .libs/slarfg.o .libs/slas2.o .libs/slasd7.o .libs/slasq4.o .libs/sorg2r.o .libs/sormlq.o .libs/ssytd2.o .libs/sgesdd.o .libs/slagts.o .libs/slarft.o .libs/slascl.o .libs/slasd8.o .libs/slasq5.o .libs/sorgbr.o .libs/sormql.o .libs/slaev2.o .libs/ssteqr.o .libs/ssyevr.o .libs/slasrt2.o .libs/slansy.o .libs/slar1vx.o .libs/slarrbx.o .libs/slarrex.o .libs/slarrfx.o .libs/slarrvx.o .libs/ilasrt2.o
ranlib .libs/liblapack.a
creating liblapack.la
(cd .libs && rm -f liblapack.la && ln -s ../liblapack.la liblapack.la)
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o calcgrid.lo ../../../src/gmxlib/calcgrid.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/calcgrid.c  -fPIC -DPIC -o .libs/calcgrid.o
../../../src/gmxlib/calcgrid.c: In function 'calc_grid':
../../../src/gmxlib/calcgrid.c:89:8: warning: unused variable 'tmp' [-Wunused-variable]
   real tmp[3];
        ^~~
../../../src/gmxlib/calcgrid.c:86:10: warning: unused variable 'j' [-Wunused-variable]
   int  i,j,nmin[DIM];
          ^
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o 3dview.lo ../../../src/gmxlib/3dview.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/3dview.c  -fPIC -DPIC -o .libs/3dview.o
../../../src/gmxlib/3dview.c: In function 'reset_view':
../../../src/gmxlib/3dview.c:282:8: warning: unused variable 'i' [-Wunused-variable]
   int  i;
        ^
In file included from ../../../src/gmxlib/3dview.c:47:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/3dview.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o atomprop.lo ../../../src/gmxlib/atomprop.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/atomprop.c  -fPIC -DPIC -o .libs/atomprop.o
In file included from ../../../src/gmxlib/atomprop.c:52:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/gmxlib/atomprop.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o copyrite.lo ../../../src/gmxlib/copyrite.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/copyrite.c  -fPIC -DPIC -o .libs/copyrite.o
../../../src/gmxlib/copyrite.c: In function 'cool_quote':
../../../src/gmxlib/copyrite.c:181:9: warning: unused variable 's' [-Wunused-variable]
   char *s,*ptr;
         ^
../../../src/gmxlib/copyrite.c: In function 'please_cite':
../../../src/gmxlib/copyrite.c:469:8: warning: unused variable 'j' [-Wunused-variable]
   int  j,index;
        ^
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/copyrite.c:53:
At top level:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o calch.lo ../../../src/gmxlib/calch.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/calch.c  -fPIC -DPIC -o .libs/calch.o
../../../src/gmxlib/calch.c: In function 'gen_waterhydrogen':
../../../src/gmxlib/calch.c:81:14: warning: unused variable 'kkk' [-Wunused-variable]
   rvec       kkk;
              ^~~
In file included from ../../../src/gmxlib/calch.c:43:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/gmxlib/calch.c:42:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o disre.lo ../../../src/gmxlib/disre.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/disre.c  -fPIC -DPIC -o .libs/disre.o
../../../src/gmxlib/disre.c: In function 'init_disres':
../../../src/gmxlib/disre.c:62:19: warning: variable 'ip' set but not used [-Wunused-but-set-variable]
     t_iparams    *ip;
                   ^~
../../../src/gmxlib/disre.c:61:26: warning: unused variable 'i' [-Wunused-variable]
     int          fa,nmol,i,npair,np;
                          ^
../../../src/gmxlib/disre.c: In function 'calc_disres_R_6':
../../../src/gmxlib/disre.c:217:23: warning: unused variable 'dt' [-Wunused-variable]
     ivec        it,jt,dt;
                       ^~
../../../src/gmxlib/disre.c:217:20: warning: unused variable 'jt' [-Wunused-variable]
     ivec        it,jt,dt;
                    ^~
../../../src/gmxlib/disre.c:217:17: warning: unused variable 'it' [-Wunused-variable]
     ivec        it,jt,dt;
                 ^~
../../../src/gmxlib/disre.c:212:37: warning: unused variable 'm' [-Wunused-variable]
     int         fa,res,i,pair,ki,kj,m;
                                     ^
../../../src/gmxlib/disre.c:212:34: warning: unused variable 'kj' [-Wunused-variable]
     int         fa,res,i,pair,ki,kj,m;
                                  ^~
../../../src/gmxlib/disre.c:212:31: warning: unused variable 'ki' [-Wunused-variable]
     int         fa,res,i,pair,ki,kj,m;
                               ^~
../../../src/gmxlib/disre.c:212:24: warning: unused variable 'i' [-Wunused-variable]
     int         fa,res,i,pair,ki,kj,m;
                        ^
../../../src/gmxlib/disre.c: In function 'ta_disres':
../../../src/gmxlib/disre.c:338:20: warning: unused variable 'jt' [-Wunused-variable]
     ivec        it,jt,dt;
                    ^~
../../../src/gmxlib/disre.c:338:17: warning: unused variable 'it' [-Wunused-variable]
     ivec        it,jt,dt;
                 ^~
In file included from ../../../src/gmxlib/disre.c:52:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/gmxlib/disre.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/disre.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o ewald_util.lo ../../../src/gmxlib/ewald_util.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/ewald_util.c  -fPIC -DPIC -o .libs/ewald_util.o
In file included from ../../../src/gmxlib/ewald_util.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/ewald_util.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o enxio.lo ../../../src/gmxlib/enxio.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/enxio.c  -fPIC -DPIC -o .libs/enxio.o
../../../src/gmxlib/enxio.c: In function 'empty_file':
../../../src/gmxlib/enxio.c:220:8: warning: variable 'ret' set but not used [-Wunused-but-set-variable]
   int  ret;
        ^~~
../../../src/gmxlib/enxio.c: In function 'get_enx_state':
../../../src/gmxlib/enxio.c:443:16: warning: unused variable 'pcouplmu_nm' [-Wunused-variable]
   static char *pcouplmu_nm[] = {
                ^~~~~~~~~~~
At top level:
../../../src/gmxlib/enxio.c:443:16: warning: 'pcouplmu_nm' defined but not used [-Wunused-variable]
In file included from ../../../src/gmxlib/enxio.c:46:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/enxio.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o do_fit.lo ../../../src/gmxlib/do_fit.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/do_fit.c  -fPIC -DPIC -o .libs/do_fit.o
../../../src/gmxlib/do_fit.c: In function 'calc_fit_R':
../../../src/gmxlib/do_fit.c:103:18: warning: unused variable 'm' [-Wunused-variable]
   int    c,r,n,j,m,i,irot,s;
                  ^
../../../src/gmxlib/do_fit.c: In function 'do_fit_ndim':
../../../src/gmxlib/do_fit.c:214:10: warning: unused variable 'i' [-Wunused-variable]
   int    i,j,m,r,c;
          ^
In file included from ../../../src/gmxlib/do_fit.c:44:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/gmxlib/do_fit.c:40:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_fatal.lo ../../../src/gmxlib/gmx_fatal.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/gmx_fatal.c  -fPIC -DPIC -o .libs/gmx_fatal.o
../../../src/gmxlib/gmx_fatal.c:226:13: warning: 'fatal_error' defined but not used [-Wunused-function]
 static void fatal_error(int f_errno,const char *fmt,...)
             ^~~~~~~~~~~
../../../src/gmxlib/gmx_fatal.c:115:13: warning: 'bputi' defined but not used [-Wunused-function]
 static void bputi(char *msg,int *len,int val,int radix,int fld,bool bNeg)
             ^~~~~
In file included from ../../../src/gmxlib/gmx_fatal.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/gmx_fatal.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o ffscanf.lo ../../../src/gmxlib/ffscanf.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/ffscanf.c  -fPIC -DPIC -o .libs/ffscanf.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o ifunc.lo ../../../src/gmxlib/ifunc.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/ifunc.c  -fPIC -DPIC -o .libs/ifunc.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gbutil.lo ../../../src/gmxlib/gbutil.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/gbutil.c  -fPIC -DPIC -o .libs/gbutil.o
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/gmxlib/gbutil.c:45:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/gmxlib/gbutil.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/gbutil.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o futil.lo ../../../src/gmxlib/futil.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/futil.c  -fPIC -DPIC -o .libs/futil.o
../../../src/gmxlib/futil.c: In function 'ffopen':
../../../src/gmxlib/futil.c:287:18: warning: unused variable 'bf' [-Wunused-variable]
   char buf[256],*bf,*bufsize=0,*ptr;
                  ^~
../../../src/gmxlib/futil.c: In function 'get_libdir':
../../../src/gmxlib/futil.c:397:22: warning: variable 'pdum' set but not used [-Wunused-but-set-variable]
   char *dir,*ptr,*s,*pdum;
                      ^~~~
../../../src/gmxlib/futil.c:395:8: warning: unused variable 'test_file' [-Wunused-variable]
   char test_file[MAX_PATHBUF];
        ^~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/futil.c:53:
At top level:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
../../../src/gmxlib/futil.c: In function 'ffopen':
../../../src/gmxlib/futil.c:187:28: warning: '%s' directive writing up to 255 bytes into a region of size 244 [-Wformat-overflow=]
   sprintf(buf,"gunzip -c < %s",fn);
                            ^~
../../../src/gmxlib/futil.c:329:12:
  ff=gunzip(buf,mode);
            ~~~              
In file included from /usr/include/stdio.h:862,
                 from ../../../src/gmxlib/futil.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 13 and 268 bytes into a destination of size 256
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/gmxlib/futil.c:173:32: warning: '%s' directive writing up to 255 bytes into a region of size 240 [-Wformat-overflow=]
   sprintf(buf,"uncompress -c < %s",fn);
                                ^~
../../../src/gmxlib/futil.c:324:21:
       ff=uncompress(buf,mode);
                     ~~~         
In file included from /usr/include/stdio.h:862,
                 from ../../../src/gmxlib/futil.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 17 and 272 bytes into a destination of size 256
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o cinvsqrtdata.lo ../../../src/gmxlib/cinvsqrtdata.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/cinvsqrtdata.c  -fPIC -DPIC -o .libs/cinvsqrtdata.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o bondfree.lo ../../../src/gmxlib/bondfree.c
mkdir .libs
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/bondfree.c  -fPIC -DPIC -o .libs/bondfree.o
../../../src/gmxlib/bondfree.c: In function 'FENE_bonds':
../../../src/gmxlib/bondfree.c:220:9: warning: unused variable 'dr' [-Wunused-variable]
   real  dr,dr2,bm2,omdr2obm2,fbond,vbond,fij,vtot;
         ^~
../../../src/gmxlib/bondfree.c: In function 'do_1_thole':
../../../src/gmxlib/bondfree.c:534:20: warning: unused variable 'r12n' [-Wunused-variable]
   real r12sq,r12_1,r12n,r12bar,v0,v1,fscal,ebar,fff;
                    ^~~~
../../../src/gmxlib/bondfree.c: In function 'posres':
../../../src/gmxlib/bondfree.c:1136:19: warning: unused variable 'fc' [-Wunused-variable]
   real v,vtot,fm,*fc;
                   ^~
../../../src/gmxlib/bondfree.c:1134:22: warning: unused variable 'ki' [-Wunused-variable]
   int  i,ai,m,d,type,ki,npbcdim=0;
                      ^~
../../../src/gmxlib/bondfree.c: In function 'cross_bond_angle':
../../../src/gmxlib/bondfree.c:1687:32: warning: variable 't3' set but not used [-Wunused-but-set-variable]
   int  i,ai,aj,ak,type,m,t1,t2,t3;
                                ^~
../../../src/gmxlib/bondfree.c: In function 'bonded_tab':
../../../src/gmxlib/bondfree.c:1762:10: warning: unused variable 'f' [-Wunused-variable]
   real v,f,dvdl;
          ^
../../../src/gmxlib/bondfree.c:1762:8: warning: unused variable 'v' [-Wunused-variable]
   real v,f,dvdl;
        ^
../../../src/gmxlib/bondfree.c: In function 'tab_angles':
../../../src/gmxlib/bondfree.c:1887:12: warning: unused variable 'snt' [-Wunused-variable]
       real snt,st,sth;
            ^~~
In file included from ../../../src/gmxlib/bondfree.c:56:
At top level:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/gmxlib/bondfree.c:42:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/bondfree.c:42:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o invblock.lo ../../../src/gmxlib/invblock.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/invblock.c  -fPIC -DPIC -o .libs/invblock.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o checkpoint.lo ../../../src/gmxlib/checkpoint.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/checkpoint.c  -fPIC -DPIC -o .libs/checkpoint.o
../../../src/gmxlib/checkpoint.c: In function 'do_cpte_ints':
../../../src/gmxlib/checkpoint.c:305:16: warning: unused variable 'i' [-Wunused-variable]
     int  nf,dt,i;
                ^
../../../src/gmxlib/checkpoint.c: In function 'do_cpte_doubles':
../../../src/gmxlib/checkpoint.c:371:16: warning: unused variable 'i' [-Wunused-variable]
     int  nf,dt,i;
                ^
../../../src/gmxlib/checkpoint.c: In function 'do_cpt_header':
../../../src/gmxlib/checkpoint.c:534:10: warning: unused variable 'i' [-Wunused-variable]
     int  i;
          ^
../../../src/gmxlib/checkpoint.c: In function 'do_cpt_files':
../../../src/gmxlib/checkpoint.c:743:9: warning: unused variable 'mask' [-Wunused-variable]
  off_t  mask = 0xFFFFFFFFL;
         ^~~~
../../../src/gmxlib/checkpoint.c: In function 'write_checkpoint':
../../../src/gmxlib/checkpoint.c:837:30: warning: unused variable 'i' [-Wunused-variable]
     int  flags_eks,flags_enh,i;
                              ^
../../../src/gmxlib/checkpoint.c:833:29: warning: unused variable 'flag_64bit' [-Wunused-variable]
     int  nppnodes,npmenodes,flag_64bit;
                             ^~~~~~~~~~
../../../src/gmxlib/checkpoint.c: In function 'read_checkpoint':
../../../src/gmxlib/checkpoint.c:1254:40: warning: left-hand operand of comma expression has no effect [-Wunused-value]
             if (outputfiles[i].filename,outputfiles[i].offset < 0)
                                        ^
../../../src/gmxlib/checkpoint.c:1036:7: warning: unused variable 'filename' [-Wunused-variable]
  char filename[STRLEN];
       ^~~~~~~~
../../../src/gmxlib/checkpoint.c:1033:15: warning: unused variable 'j' [-Wunused-variable]
     int  fp,i,j;
               ^
../../../src/gmxlib/checkpoint.c: In function 'list_checkpoint':
../../../src/gmxlib/checkpoint.c:1421:12: warning: unused variable 'j' [-Wunused-variable]
     int  i,j;
            ^
../../../src/gmxlib/checkpoint.c:1421:10: warning: unused variable 'i' [-Wunused-variable]
     int  i,j;
          ^
../../../src/gmxlib/checkpoint.c:1420:10: warning: unused variable 'indent' [-Wunused-variable]
     int  indent;
          ^~~~~~
In file included from ../../../src/gmxlib/checkpoint.c:34:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/checkpoint.c:34:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/checkpoint.c:32:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o macros.lo ../../../src/gmxlib/macros.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/macros.c  -fPIC -DPIC -o .libs/macros.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o confio.lo ../../../src/gmxlib/confio.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/confio.c  -fPIC -DPIC -o .libs/confio.o
../../../src/gmxlib/confio.c: In function 'read_espresso_conf':
../../../src/gmxlib/confio.c:448:21: warning: unused variable 'npar' [-Wunused-variable]
   int  natoms,level,npar,r,nprop,p,i,m;
                     ^~~~
../../../src/gmxlib/confio.c:448:8: warning: unused variable 'natoms' [-Wunused-variable]
   int  natoms,level,npar,r,nprop,p,i,m;
        ^~~~~~
../../../src/gmxlib/confio.c: In function 'read_stx_conf':
../../../src/gmxlib/confio.c:1298:14: warning: unused variable 'd' [-Wunused-variable]
   real       d,r1,r2;
              ^
../../../src/gmxlib/confio.c:1293:14: warning: unused variable 'buf' [-Wunused-variable]
   char       buf[256];
              ^~~
At top level:
../../../src/gmxlib/confio.c:864:13: warning: 'get_conf' defined but not used [-Wunused-function]
 static void get_conf(FILE *in, char *title, int *natoms,
             ^~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/confio.c:59:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/gmxlib/confio.c:57:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/gmxlib/confio.c:54:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/gmxlib/confio.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/confio.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
../../../src/gmxlib/confio.c: In function 'write_hconf_box':
../../../src/gmxlib/confio.c:983:20: warning: '%d' directive writing between 2 and 10 bytes into a region of size between 7 and 75 [-Wformat-overflow=]
     sprintf(format,"%%%d.%df%%%d.%df%%%d.%df"
                    ^~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/gmxlib/confio.c:984:17: note: format string is defined here
      "%%%d.%df%%%d.%df%%%d.%df%%%d.%df%%%d.%df%%%d.%df\n",
                 ^~
../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [10, 2147483647]
     sprintf(format,"%%%d.%df%%%d.%df%%%d.%df"
                    ^~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [5, 2147483647]
../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [10, 2147483647]
../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [5, 2147483647]
../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [10, 2147483647]
../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [5, 2147483647]
../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [10, 2147483647]
../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [5, 2147483647]
../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [10, 2147483647]
../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [5, 2147483647]
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/gmxlib/confio.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 56 and 209 bytes into a destination of size 100
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o filenm.lo ../../../src/gmxlib/filenm.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/filenm.c  -fPIC -DPIC -o .libs/filenm.o
../../../src/gmxlib/filenm.c: In function 'add_suffix_to_output_names':
../../../src/gmxlib/filenm.c:811:12: warning: unused variable 'pos' [-Wunused-variable]
  int   i,j,pos;
            ^~~
In file included from ../../../include/wman.h:44,
                 from ../../../src/gmxlib/filenm.c:48:
At top level:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
../../../src/gmxlib/filenm.c: In function 'add_suffix_to_output_names':
../../../src/gmxlib/filenm.c:825:27: warning: '.' directive writing 1 byte into a region of size between 0 and 4095 [-Wformat-overflow=]
     sprintf(newname,"%s.%s.%s",buf,suffix,extpos+1);
                           ^
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/gmxlib/filenm.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 3 or more bytes (assuming 4098) into a destination of size 4096
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o sparsematrix.lo ../../../src/gmxlib/sparsematrix.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/sparsematrix.c  -fPIC -DPIC -o .libs/sparsematrix.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o maths.lo ../../../src/gmxlib/maths.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/maths.c  -fPIC -DPIC -o .libs/maths.o
../../../src/gmxlib/maths.c: In function 'gmx_erfc':
../../../src/gmxlib/maths.c:291:31: warning: unused variable 'z4' [-Wunused-variable]
      double r1,r2,s1,s2,s3,z2,z4;
                               ^~
../../../src/gmxlib/maths.c:291:28: warning: unused variable 'z2' [-Wunused-variable]
      double r1,r2,s1,s2,s3,z2,z4;
                            ^~
../../../src/gmxlib/maths.c:291:25: warning: unused variable 's3' [-Wunused-variable]
      double r1,r2,s1,s2,s3,z2,z4;
                         ^~
../../../src/gmxlib/maths.c:291:22: warning: unused variable 's2' [-Wunused-variable]
      double r1,r2,s1,s2,s3,z2,z4;
                      ^~
../../../src/gmxlib/maths.c:291:19: warning: unused variable 's1' [-Wunused-variable]
      double r1,r2,s1,s2,s3,z2,z4;
                   ^~
../../../src/gmxlib/maths.c:291:16: warning: unused variable 'r2' [-Wunused-variable]
      double r1,r2,s1,s2,s3,z2,z4;
                ^~
../../../src/gmxlib/maths.c:291:13: warning: unused variable 'r1' [-Wunused-variable]
      double r1,r2,s1,s2,s3,z2,z4;
             ^~
../../../src/gmxlib/maths.c:337:13: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
             if(hx<0&&ix>=0x40180000)
             ^~
../../../src/gmxlib/maths.c:339:10: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
          R=rb0+s*(rb1+s*(rb2+s*(rb3+s*(rb4+s*(rb5+s*rb6)))));
          ^
In file included from ../../../src/gmxlib/maths.c:43:
At top level:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmxfio.lo ../../../src/gmxlib/gmxfio.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/gmxfio.c  -fPIC -DPIC -o .libs/gmxfio.o
../../../src/gmxlib/gmxfio.c: In function 'gmx_fio_fopen':
../../../src/gmxlib/gmxfio.c:803:8: warning: unused variable 'fp' [-Wunused-variable]
  FILE *fp;
        ^~
../../../src/gmxlib/gmxfio.c: In function 'gmx_fio_get_output_file_positions':
../../../src/gmxlib/gmxfio.c:885:27: warning: unused variable 'pos' [-Wunused-variable]
  long                     pos;
                           ^~~
../../../src/gmxlib/gmxfio.c:884:34: warning: unused variable 'pos_lo' [-Wunused-variable]
  int                      pos_hi,pos_lo;
                                  ^~~~~~
../../../src/gmxlib/gmxfio.c:884:27: warning: unused variable 'pos_hi' [-Wunused-variable]
  int                      pos_hi,pos_lo;
                           ^~~~~~
../../../src/gmxlib/gmxfio.c:883:36: warning: unused variable 'rc' [-Wunused-variable]
  int                      i,nfiles,rc,nalloc;
                                    ^~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o orires.lo ../../../src/gmxlib/orires.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/orires.c  -fPIC -DPIC -o .libs/orires.o
../../../src/gmxlib/orires.c: In function 'init_orires':
../../../src/gmxlib/orires.c:59:26: warning: unused variable 'nr' [-Wunused-variable]
     int    i,j,d,ex,nmol,nr,*nr_ex;
                          ^~
In file included from ../../../src/gmxlib/orires.c:49:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/gmxlib/orires.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/orires.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o main.lo ../../../src/gmxlib/main.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/main.c  -fPIC -DPIC -o .libs/main.o
../../../src/gmxlib/main.c: In function 'par_fn':
../../../src/gmxlib/main.c:68:7: warning: unused variable 'n' [-Wunused-variable]
   int n;
       ^
../../../src/gmxlib/main.c: In function 'gmx_log_open':
../../../src/gmxlib/main.c:124:12: warning: unused variable 'testlen' [-Wunused-variable]
   int  len,testlen,pid;
            ^~~~~~~
../../../src/gmxlib/main.c: In function 'init_par':
../../../src/gmxlib/main.c:309:13: warning: unused variable 'i' [-Wunused-variable]
   int       i;
             ^
In file included from ../../../include/pull.h:44,
                 from ../../../include/mdrun.h:56,
                 from ../../../src/gmxlib/main.c:52:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../include/pull.h:44,
                 from ../../../include/mdrun.h:56,
                 from ../../../src/gmxlib/main.c:52:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/mdrun.h:50,
                 from ../../../src/gmxlib/main.c:52:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o index.lo ../../../src/gmxlib/index.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/index.c  -fPIC -DPIC -o .libs/index.o
../../../src/gmxlib/index.c: In function 'analyse_prot':
../../../src/gmxlib/index.c:298:15: warning: unused variable 'nnpres' [-Wunused-variable]
   int     nra,nnpres,npres;
               ^~~~~~
../../../src/gmxlib/index.c: In function 'init_index':
../../../src/gmxlib/index.c:532:19: warning: variable 'nread' set but not used [-Wunused-but-set-variable]
   int      i,j,ng,nread;
                   ^~~~~
In file included from ../../../src/gmxlib/index.c:51:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/index.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o names.lo ../../../src/gmxlib/names.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/names.c  -fPIC -DPIC -o .libs/names.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o mshift.lo ../../../src/gmxlib/mshift.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/mshift.c  -fPIC -DPIC -o .libs/mshift.o
../../../src/gmxlib/mshift.c: In function 'compact_graph':
../../../src/gmxlib/mshift.c:243:12: warning: unused variable 'e' [-Wunused-variable]
   atom_id *e;
            ^
../../../src/gmxlib/mshift.c:242:9: warning: unused variable 'j' [-Wunused-variable]
   int i,j,n,max_nedge;
         ^
../../../src/gmxlib/mshift.c: In function 'mk_graph_ilist':
../../../src/gmxlib/mshift.c:307:13: warning: variable 'nbtot' set but not used [-Wunused-but-set-variable]
   int     i,nbtot;
             ^~~~~
In file included from ../../../src/gmxlib/mshift.c:46:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/gmxlib/mshift.c:44:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/mshift.c:44:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o mtop_util.lo ../../../src/gmxlib/mtop_util.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/mtop_util.c  -fPIC -DPIC -o .libs/mtop_util.o
../../../src/gmxlib/mtop_util.c: In function 'gmx_mtop_atomnr_to_molblock_ind':
../../../src/gmxlib/mtop_util.c:105:14: warning: unused variable 'atoms' [-Wunused-variable]
     t_atoms *atoms;
              ^~~~~
../../../src/gmxlib/mtop_util.c: In function 'gmx_mtop_atominfo_global':
../../../src/gmxlib/mtop_util.c:132:21: warning: unused variable 'molb' [-Wunused-variable]
     gmx_molblock_t *molb;
                     ^~~~
../../../src/gmxlib/mtop_util.c: In function 'gmx_mtop_ilistloop_all_next':
../../../src/gmxlib/mtop_util.c:384:21: warning: unused variable 'molb' [-Wunused-variable]
     gmx_molblock_t *molb;
                     ^~~~
../../../src/gmxlib/mtop_util.c: In function 'gmx_mtop_global_cgs':
../../../src/gmxlib/mtop_util.c:438:14: warning: unused variable 'atoms' [-Wunused-variable]
     t_atoms *atoms;
              ^~~~~
../../../src/gmxlib/mtop_util.c: In function 'gen_local_top':
../../../src/gmxlib/mtop_util.c:669:31: warning: unused variable 'mt' [-Wunused-variable]
     int mb,srcnr,destnr,ftype,mt,natoms,nposre_old;
                               ^~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o mtxio.lo ../../../src/gmxlib/mtxio.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/mtxio.c  -fPIC -DPIC -o .libs/mtxio.o
../../../src/gmxlib/mtxio.c: In function 'gmx_mtxio_write':
../../../src/gmxlib/mtxio.c:90:13: warning: variable 'xd' set but not used [-Wunused-but-set-variable]
     XDR *   xd;
             ^~
../../../src/gmxlib/mtxio.c: In function 'gmx_mtxio_read':
../../../src/gmxlib/mtxio.c:164:13: warning: variable 'xd' set but not used [-Wunused-but-set-variable]
     XDR *   xd;
             ^~
In file included from ../../../src/gmxlib/mtxio.c:48:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o network.lo ../../../src/gmxlib/network.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/network.c  -fPIC -DPIC -o .libs/network.o
../../../src/gmxlib/network.c: In function 'gmx_setup':
../../../src/gmxlib/network.c:75:12: warning: unused variable 'flag' [-Wunused-variable]
   int    i,flag;
            ^~~~
../../../src/gmxlib/network.c:75:10: warning: unused variable 'i' [-Wunused-variable]
   int    i,flag;
          ^
../../../src/gmxlib/network.c:73:10: warning: unused variable 'buf' [-Wunused-variable]
   char   buf[256];
          ^~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/network.c:46:
At top level:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/gmxlib/network.c:45:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nrama.lo ../../../src/gmxlib/nrama.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/nrama.c  -fPIC -DPIC -o .libs/nrama.o
../../../src/gmxlib/nrama.c: In function 'get_dih2':
../../../src/gmxlib/nrama.c:179:11: warning: unused variable 'found' [-Wunused-variable]
   int     found,**ff,thisff[NPP];
           ^~~~~
../../../src/gmxlib/nrama.c: In function 'init_rama':
../../../src/gmxlib/nrama.c:307:10: warning: unused variable 'ePBC' [-Wunused-variable]
   int    ePBC;
          ^~~~
At top level:
../../../src/gmxlib/nrama.c:176:13: warning: 'get_dih2' defined but not used [-Wunused-function]
 static void get_dih2(t_xrama *xr,t_functype functype[],
             ^~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/nrama.h:45,
                 from ../../../src/gmxlib/nrama.c:49:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
../../../src/gmxlib/nrama.c: In function 'init_rama':
../../../src/gmxlib/nrama.c:125:21: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=]
   sprintf(buf,"%s-%d",*atoms->resname[atoms->atom[ff[1]].resnr],
                     ^
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/gmxlib/nrama.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 3 or more bytes (assuming 13) into a destination of size 12
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o mvdata.lo ../../../src/gmxlib/mvdata.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/mvdata.c  -fPIC -DPIC -o .libs/mvdata.o
../../../src/gmxlib/mvdata.c: In function 'bc_atoms':
../../../src/gmxlib/mvdata.c:147:7: warning: unused variable 'dummy' [-Wunused-variable]
   int dummy;
       ^~~~~
../../../src/gmxlib/mvdata.c: In function 'bc_groups':
../../../src/gmxlib/mvdata.c:162:7: warning: unused variable 'dummy' [-Wunused-variable]
   int dummy;
       ^~~~~
../../../src/gmxlib/mvdata.c: In function 'bc_ffparams':
../../../src/gmxlib/mvdata.c:290:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/gmxlib/mvdata.c: In function 'bc_molblock':
../../../src/gmxlib/mvdata.c:427:8: warning: unused variable 'bAlloc' [-Wunused-variable]
   bool bAlloc=TRUE;
        ^~~~~~
At top level:
../../../src/gmxlib/mvdata.c:275:13: warning: 'bc_idef' defined but not used [-Wunused-function]
 static void bc_idef(const t_commrec *cr,t_idef *idef)
             ^~~~~~~
In file included from ../../../src/gmxlib/mvdata.c:50:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/mvdata.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o matio.lo ../../../src/gmxlib/matio.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/matio.c  -fPIC -DPIC -o .libs/matio.o
../../../src/gmxlib/matio.c: In function 'write_xpm_map_split':
../../../src/gmxlib/matio.c:636:16: warning: unused variable 'fac' [-Wunused-variable]
   real   r,g,b,fac;
                ^~~
../../../src/gmxlib/matio.c:636:14: warning: unused variable 'b' [-Wunused-variable]
   real   r,g,b,fac;
              ^
../../../src/gmxlib/matio.c:636:12: warning: unused variable 'g' [-Wunused-variable]
   real   r,g,b,fac;
            ^
../../../src/gmxlib/matio.c:636:10: warning: unused variable 'r' [-Wunused-variable]
   real   r,g,b,fac;
          ^
../../../src/gmxlib/matio.c:635:10: warning: unused variable 'i' [-Wunused-variable]
   int    i,ntot;
          ^
In file included from ../../../src/gmxlib/matio.c:50:
At top level:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/matio.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nrjac.lo ../../../src/gmxlib/nrjac.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/nrjac.c  -fPIC -DPIC -o .libs/nrjac.o
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/gmxlib/nrjac.c:44:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o princ.lo ../../../src/gmxlib/princ.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/princ.c  -fPIC -DPIC -o .libs/princ.o
../../../src/gmxlib/princ.c:249:13: warning: 'dump_shit' defined but not used [-Wunused-function]
 static void dump_shit(FILE *out,matrix trans,rvec prcomp,real totmass)
             ^~~~~~~~~
../../../src/gmxlib/princ.c:48:13: warning: 'm_op' defined but not used [-Wunused-function]
 static void m_op(matrix mat,rvec x)
             ^~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/gmxlib/princ.c:44:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/gmxlib/princ.c:42:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/princ.c:42:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o rando.lo ../../../src/gmxlib/rando.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/rando.c  -fPIC -DPIC -o .libs/rando.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nrnb.lo ../../../src/gmxlib/nrnb.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/nrnb.c  -fPIC -DPIC -o .libs/nrnb.o
../../../src/gmxlib/nrnb.c: In function 'pr_load':
../../../src/gmxlib/nrnb.c:473:3: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
   for(j=0; (j<eNRNB); j++)
   ^~~
../../../src/gmxlib/nrnb.c:476:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
     fprintf(log,"\nDetailed load balancing info in percentage of average\n");
     ^~~~~~~
In file included from ../../../src/gmxlib/nrnb.c:48:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o pargs.lo ../../../src/gmxlib/pargs.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/pargs.c  -fPIC -DPIC -o .libs/pargs.o
../../../src/gmxlib/pargs.c: In function 'print_pargs':
../../../src/gmxlib/pargs.c:306:26: warning: unused variable 'tmp' [-Wunused-variable]
   char buf[32],buf2[256],tmp[256];
                          ^~~
../../../src/gmxlib/pargs.c:306:16: warning: unused variable 'buf2' [-Wunused-variable]
   char buf[32],buf2[256],tmp[256];
                ^~~~
../../../src/gmxlib/pargs.c:306:8: warning: unused variable 'buf' [-Wunused-variable]
   char buf[32],buf2[256],tmp[256];
        ^~~
In file included from ../../../src/gmxlib/pargs.c:51:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/pargs.c:51:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_random.lo ../../../src/gmxlib/gmx_random.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/gmx_random.c  -fPIC -DPIC -o .libs/gmx_random.o
../../../src/gmxlib/gmx_random.c: In function 'gmx_rng_make_seed':
../../../src/gmxlib/gmx_random.c:146:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable]
   int ret;
       ^~~
../../../src/gmxlib/gmx_random.c: In function 'gmx_rng_update':
../../../src/gmxlib/gmx_random.c:168:7: warning: variable 'mti' set but not used [-Wunused-but-set-variable]
   int mti,k;
       ^~~
../../../src/gmxlib/gmx_random.c:167:16: warning: unused variable 'lastx' [-Wunused-variable]
   unsigned int lastx,x1,x2,y,*mt;
                ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o random.lo ../../../src/gmxlib/random.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/random.c  -fPIC -DPIC -o .libs/random.o
../../../src/gmxlib/random.c: In function 'maxwell_speed':
../../../src/gmxlib/random.c:94:11: warning: unused variable 'i' [-Wunused-variable]
   int     i;
           ^
../../../src/gmxlib/random.c:93:12: warning: unused variable 'dummy' [-Wunused-variable]
   atom_id *dummy;
            ^~~~~
In file included from ../../../src/gmxlib/random.c:45:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/random.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o replace.lo ../../../src/gmxlib/replace.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/replace.c  -fPIC -DPIC -o .libs/replace.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o rbin.lo ../../../src/gmxlib/rbin.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/rbin.c  -fPIC -DPIC -o .libs/rbin.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o readinp.lo ../../../src/gmxlib/readinp.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/readinp.c  -fPIC -DPIC -o .libs/readinp.o
In file included from ../../../src/gmxlib/readinp.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o rmpbc.lo ../../../src/gmxlib/rmpbc.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/rmpbc.c  -fPIC -DPIC -o .libs/rmpbc.o
In file included from ../../../src/gmxlib/rmpbc.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/rmpbc.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/gmxlib/rmpbc.c:45:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o smalloc.lo ../../../src/gmxlib/smalloc.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/smalloc.c  -fPIC -DPIC -o .libs/smalloc.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o strdb.lo ../../../src/gmxlib/strdb.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/strdb.c  -fPIC -DPIC -o .libs/strdb.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o shift_util.lo ../../../src/gmxlib/shift_util.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/shift_util.c  -fPIC -DPIC -o .libs/shift_util.o
../../../src/gmxlib/shift_util.c: In function 'shift_LRcorrection':
../../../src/gmxlib/shift_util.c:257:10: warning: unused variable 'shift' [-Wunused-variable]
   ivec   shift;
          ^~~~~
../../../src/gmxlib/shift_util.c:253:42: warning: unused variable 'qtot' [-Wunused-variable]
   real   qi,dr,dr2,dr_1,dr_3,fscal,Vexcl,qtot=0;
                                          ^~~~
../../../src/gmxlib/shift_util.c:252:10: warning: unused variable 'isp' [-Wunused-variable]
   double isp=0.564189583547756;
          ^~~
At top level:
../../../src/gmxlib/shift_util.c:370:13: warning: 'rgbset' defined but not used [-Wunused-function]
 static real rgbset(real col)
             ^~~~~~
In file included from ../../../src/gmxlib/shift_util.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/shift_util.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o pdbio.lo ../../../src/gmxlib/pdbio.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/pdbio.c  -fPIC -DPIC -o .libs/pdbio.o
In file included from ../../../src/gmxlib/pdbio.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/gmxlib/pdbio.c:44:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/pdbio.c:44:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
../../../src/gmxlib/pdbio.c: In function 'read_pdbfile':
../../../src/gmxlib/pdbio.c:570:23: warning: 'd' directive writing 1 byte into a region of size between 0 and 31 [-Wformat-overflow=]
   sprintf(format,"%s%%d",form2);
                       ^
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/gmxlib/pdbio.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 3 and 34 bytes into a destination of size 32
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/gmxlib/pdbio.c:574:27: warning: 'd' directive writing 1 byte into a region of size between 0 and 31 [-Wformat-overflow=]
       sprintf(format,"%s%%d",form2);
                           ^
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/gmxlib/pdbio.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 3 and 34 bytes into a destination of size 32
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o pbc.lo ../../../src/gmxlib/pbc.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/pbc.c  -fPIC -DPIC -o .libs/pbc.o
../../../src/gmxlib/pbc.c: In function 'low_set_pbc':
../../../src/gmxlib/pbc.c:272:8: warning: unused variable 'bXY' [-Wunused-variable]
   bool bXY,bUse;
        ^~~
../../../src/gmxlib/pbc.c: In function 'put_atom_in_box':
../../../src/gmxlib/pbc.c:1300:7: warning: unused variable 'i' [-Wunused-variable]
   int i,m,d;
       ^
../../../src/gmxlib/pbc.c: In function 'put_atoms_in_box':
../../../src/gmxlib/pbc.c:1314:11: warning: unused variable 'd' [-Wunused-variable]
   int i,m,d;
           ^
../../../src/gmxlib/pbc.c:1314:9: warning: unused variable 'm' [-Wunused-variable]
   int i,m,d;
         ^
In file included from ../../../src/gmxlib/pbc.c:43:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/pbc.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o sortwater.lo ../../../src/gmxlib/sortwater.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/sortwater.c  -fPIC -DPIC -o .libs/sortwater.o
In file included from ../../../src/gmxlib/sortwater.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/sortwater.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o symtab.lo ../../../src/gmxlib/symtab.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/symtab.c  -fPIC -DPIC -o .libs/symtab.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o string2.lo ../../../src/gmxlib/string2.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/string2.c  -fPIC -DPIC -o .libs/string2.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o topsort.lo ../../../src/gmxlib/topsort.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/topsort.c  -fPIC -DPIC -o .libs/topsort.o
../../../src/gmxlib/topsort.c: In function 'gmx_sort_ilist_fe':
../../../src/gmxlib/topsort.c:142:10: warning: unused variable 'bPert' [-Wunused-variable]
     bool bPert;
          ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o trnio.lo ../../../src/gmxlib/trnio.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/trnio.c  -fPIC -DPIC -o .libs/trnio.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o statutil.lo ../../../src/gmxlib/statutil.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/statutil.c  -fPIC -DPIC -o .libs/statutil.o
../../../src/gmxlib/statutil.c: In function 'check_times2':
../../../src/gmxlib/statutil.c:152:8: warning: variable 'margin' set but not used [-Wunused-but-set-variable]
   real margin;
        ^~~~~~
../../../src/gmxlib/statutil.c: In function 'parse_common_args':
../../../src/gmxlib/statutil.c:528:14: warning: unused variable 'newdesc' [-Wunused-variable]
   char *ptr,*newdesc;
              ^~~~~~~
../../../src/gmxlib/statutil.c:528:9: warning: unused variable 'ptr' [-Wunused-variable]
   char *ptr,*newdesc;
         ^~~
../../../src/gmxlib/statutil.c:491:11: warning: unused variable 'npri_pa' [-Wunused-variable]
   t_pargs npri_pa   = { "-npri", FALSE, etINT,   {&npri},
           ^~~~~~~
../../../src/gmxlib/statutil.c:485:27: warning: unused variable 'mantp' [-Wunused-variable]
   static int  nicelevel=0,mantp=0,npri=0,debug_level=0;
                           ^~~~~
At top level:
../../../src/gmxlib/statutil.c:485:27: warning: 'mantp' defined but not used [-Wunused-variable]
../../../src/gmxlib/statutil.c:361:13: warning: 'pdesc' defined but not used [-Wunused-function]
 static void pdesc(char *desc)
             ^~~~~
../../../src/gmxlib/statutil.c:73:14: warning: 'timelabel' defined but not used [-Wunused-variable]
 static char *timelabel     = NULL;
              ^~~~~~~~~
In file included from ../../../src/gmxlib/statutil.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/statutil.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/statutil.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o viewit.lo ../../../src/gmxlib/viewit.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/viewit.c  -fPIC -DPIC -o .libs/viewit.o
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/viewit.c:42:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o wgms.lo ../../../src/gmxlib/wgms.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/wgms.c  -fPIC -DPIC -o .libs/wgms.o
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/gmxlib/wgms.c:41:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o xdrd.lo ../../../src/gmxlib/xdrd.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/xdrd.c  -fPIC -DPIC -o .libs/xdrd.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o writeps.lo ../../../src/gmxlib/writeps.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/writeps.c  -fPIC -DPIC -o .libs/writeps.o
In file included from ../../../src/gmxlib/writeps.c:43:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o wman.lo ../../../src/gmxlib/wman.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/wman.c  -fPIC -DPIC -o .libs/wman.o
../../../src/gmxlib/wman.c: In function 'mydate':
../../../src/gmxlib/wman.c:168:15: warning: unused variable 'num' [-Wunused-variable]
   const char *num[] = { "01", "02", "03", "04", "05", "06","07", "08", "09" };
               ^~~
../../../src/gmxlib/wman.c: In function 'print_tty_formatted':
../../../src/gmxlib/wman.c:510:16: warning: unused variable 'j' [-Wunused-variable]
   int buflen,i,j;
                ^
../../../src/gmxlib/wman.c: In function 'write_wikiman':
../../../src/gmxlib/wman.c:631:14: warning: unused variable 'tmp2' [-Wunused-variable]
   char *tmp,*tmp2;
              ^~~~
../../../src/gmxlib/wman.c:630:17: warning: unused variable 'link' [-Wunused-variable]
   char buf[256],link[10];
                 ^~~~
../../../src/gmxlib/wman.c: In function 'write_htmlman':
../../../src/gmxlib/wman.c:682:8: warning: unused variable 'link' [-Wunused-variable]
   char link[10],tmp[255];
        ^~~~
../../../src/gmxlib/wman.c: In function 'write_xmlman':
../../../src/gmxlib/wman.c:788:7: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
       if (strcmp(link,"???")==0)
       ^~
../../../src/gmxlib/wman.c:790:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
         if (fnm[i].opt[0]=='-') strcpy(opt,fnm[i].opt+1);
         ^~
../../../src/gmxlib/wman.c: In function 'write_py':
../../../src/gmxlib/wman.c:925:8: warning: unused variable 'bHidden' [-Wunused-variable]
   bool bHidden;
        ^~~~~~~
In file included from ../../../src/gmxlib/wman.c:48:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o typedefs.lo ../../../src/gmxlib/typedefs.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/typedefs.c  -fPIC -DPIC -o .libs/typedefs.o
../../../src/gmxlib/typedefs.c: In function 'init_block':
../../../src/gmxlib/typedefs.c:64:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/gmxlib/typedefs.c: In function 'init_blocka':
../../../src/gmxlib/typedefs.c:74:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/gmxlib/typedefs.c: In function 'init_atom':
../../../src/gmxlib/typedefs.c:87:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/gmxlib/typedefs.c: In function 'init_top':
../../../src/gmxlib/typedefs.c:135:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/gmxlib/typedefs.c: In function 'done_top':
../../../src/gmxlib/typedefs.c:284:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/gmxlib/typedefs.c: In function 'init_state':
../../../src/gmxlib/typedefs.c:386:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
In file included from ../../../src/gmxlib/typedefs.c:43:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/typedefs.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o xtcio.lo ../../../src/gmxlib/xtcio.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/xtcio.c  -fPIC -DPIC -o .libs/xtcio.o
In file included from ../../../src/gmxlib/xtcio.c:46:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/xtcio.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o trxio.lo ../../../src/gmxlib/trxio.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/trxio.c  -fPIC -DPIC -o .libs/trxio.o
In file included from ../../../src/gmxlib/trxio.c:53:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/gmxlib/trxio.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/trxio.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/trxio.c:45:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dihres.lo ../../../src/gmxlib/dihres.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/dihres.c  -fPIC -DPIC -o .libs/dihres.o
../../../src/gmxlib/dihres.c: In function 'ta_dihres':
../../../src/gmxlib/dihres.c:77:30: warning: unused variable 'dp2' [-Wunused-variable]
   real phi0,phi,ddphi,ddp,dp,dp2,dphi,kfac,cos_phi,sign,d2r,fc;
                              ^~~
../../../src/gmxlib/dihres.c:76:29: warning: unused variable 'typep' [-Wunused-variable]
   int  ai,aj,ak,al,i,k,type,typep,label,power,t1,t2,t3;
                             ^~~~~
In file included from ../../../src/gmxlib/dihres.c:51:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/gmxlib/dihres.c:46:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/dihres.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o tcontrol.lo ../../../src/gmxlib/tcontrol.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/tcontrol.c  -fPIC -DPIC -o .libs/tcontrol.o
../../../src/gmxlib/tcontrol.c:61:22: warning: 'timeconvert' defined but not used [-Wunused-variable]
 static t_timeconvert timeconvert[] = {
                      ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/tcontrol.c:41:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o xvgr.lo ../../../src/gmxlib/xvgr.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/xvgr.c  -fPIC -DPIC -o .libs/xvgr.o
../../../src/gmxlib/xvgr.c: In function 'use_xmgr':
../../../src/gmxlib/xvgr.c:56:8: warning: unused variable 'bXMGR' [-Wunused-variable]
   bool bXMGR;
        ^~~~~
../../../src/gmxlib/xvgr.c: In function 'read_xvg_time':
../../../src/gmxlib/xvgr.c:402:14: warning: unused variable 'tend' [-Wunused-variable]
   double dbl,tend=0;
              ^~~~
In file included from ../../../src/gmxlib/xvgr.c:50:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/xvgr.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/gmxlib/xvgr.c:46:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/xvgr.c:45:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_cyclecounter.lo ../../../src/gmxlib/gmx_cyclecounter.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/gmx_cyclecounter.c  -fPIC -DPIC -o .libs/gmx_cyclecounter.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o txtdump.lo ../../../src/gmxlib/txtdump.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/txtdump.c  -fPIC -DPIC -o .libs/txtdump.o
../../../src/gmxlib/txtdump.c: In function 'pr_qm_opts':
../../../src/gmxlib/txtdump.c:339:11: warning: unused variable 'j' [-Wunused-variable]
   int i,m,j;
           ^
../../../src/gmxlib/txtdump.c:339:9: warning: unused variable 'm' [-Wunused-variable]
   int i,m,j;
         ^
../../../src/gmxlib/txtdump.c:339:7: warning: unused variable 'i' [-Wunused-variable]
   int i,m,j;
       ^
../../../src/gmxlib/txtdump.c: In function 'pr_ffparams':
../../../src/gmxlib/txtdump.c:906:9: warning: unused variable 'j' [-Wunused-variable]
   int i,j;
         ^
../../../src/gmxlib/txtdump.c: In function 'pr_block_title':
../../../src/gmxlib/txtdump.c:950:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/gmxlib/txtdump.c: In function 'pr_blocka_title':
../../../src/gmxlib/txtdump.c:963:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/gmxlib/txtdump.c: In function 'pr_block':
../../../src/gmxlib/txtdump.c:1016:9: warning: unused variable 'j' [-Wunused-variable]
   int i,j,ok,size,start,end;
         ^
../../../src/gmxlib/txtdump.c: In function 'pr_atom':
../../../src/gmxlib/txtdump.c:1120:9: warning: unused variable 'j' [-Wunused-variable]
   int i,j;
         ^
../../../src/gmxlib/txtdump.c: In function 'pr_groups':
../../../src/gmxlib/txtdump.c:1151:9: warning: unused variable 'grpnr' [-Wunused-variable]
     int grpnr[egcNR];
         ^~~~~
At top level:
../../../src/gmxlib/txtdump.c:976:13: warning: 'low_pr_block' defined but not used [-Wunused-function]
 static void low_pr_block(FILE *fp,int indent,const char *title,t_block *block, bool bShowNumbers)
             ^~~~~~~~~~~~
In file included from ../../../src/gmxlib/txtdump.c:51:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/txtdump.c:51:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o splitter.lo ../../../src/gmxlib/splitter.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/splitter.c  -fPIC -DPIC -o .libs/splitter.o
../../../src/gmxlib/splitter.c: In function 'split_force2':
../../../src/gmxlib/splitter.c:112:17: warning: variable 'type' set but not used [-Wunused-but-set-variable]
   int     i,j,k,type,nodeid,nratoms,tnr;
                 ^~~~
../../../src/gmxlib/splitter.c:112:13: warning: unused variable 'j' [-Wunused-variable]
   int     i,j,k,type,nodeid,nratoms,tnr;
             ^
../../../src/gmxlib/splitter.c: In function 'mk_border':
../../../src/gmxlib/splitter.c:244:14: warning: unused variable 'j' [-Wunused-variable]
   int      i,j,is,ic,ns,nc,nbor;
              ^
../../../src/gmxlib/splitter.c: In function 'split_blocks':
../../../src/gmxlib/splitter.c:316:11: warning: unused variable 'bSHK' [-Wunused-variable]
   bool    bSHK;
           ^~~~
../../../src/gmxlib/splitter.c:312:19: warning: unused variable 'last_shk' [-Wunused-variable]
   int      nodeid,last_shk,nbor;
                   ^~~~~~~~
../../../src/gmxlib/splitter.c:311:17: warning: unused variable 'ai' [-Wunused-variable]
   int      i,ii,ai,b0,b1;
                 ^~
../../../src/gmxlib/splitter.c:311:14: warning: unused variable 'ii' [-Wunused-variable]
   int      i,ii,ai,b0,b1;
              ^~
../../../src/gmxlib/splitter.c: In function 'merge_sid':
../../../src/gmxlib/splitter.c:556:8: warning: unused variable 'nChanged' [-Wunused-variable]
   int  nChanged;
        ^~~~~~~~
../../../src/gmxlib/splitter.c: In function 'gen_sblocks':
../../../src/gmxlib/splitter.c:654:11: warning: unused variable 'isid' [-Wunused-variable]
   int     isid,nsid;
           ^~~~
../../../src/gmxlib/splitter.c:652:27: warning: unused variable 'n' [-Wunused-variable]
   int     i,i0,j,k,istart,n;
                           ^
../../../src/gmxlib/splitter.c:652:20: warning: unused variable 'istart' [-Wunused-variable]
   int     i,i0,j,k,istart,n;
                    ^~~~~~
../../../src/gmxlib/splitter.c:652:18: warning: unused variable 'k' [-Wunused-variable]
   int     i,i0,j,k,istart,n;
                  ^
../../../src/gmxlib/splitter.c:652:16: warning: unused variable 'j' [-Wunused-variable]
   int     i,i0,j,k,istart,n;
                ^
../../../src/gmxlib/splitter.c: In function 'split_top':
../../../src/gmxlib/splitter.c:755:21: warning: unused variable 'minidx' [-Wunused-variable]
   int minhome,ihome,minidx;
                     ^~~~~~
../../../src/gmxlib/splitter.c:755:15: warning: unused variable 'ihome' [-Wunused-variable]
   int minhome,ihome,minidx;
               ^~~~~
../../../src/gmxlib/splitter.c:755:7: warning: unused variable 'minhome' [-Wunused-variable]
   int minhome,ihome,minidx;
       ^~~~~~~
../../../src/gmxlib/splitter.c:754:14: warning: unused variable 'ia' [-Wunused-variable]
   t_iatom   *ia;
              ^~
../../../src/gmxlib/splitter.c:753:31: warning: unused variable 'nrd' [-Wunused-variable]
   int ftype,nvsite_constr,nra,nrd;
                               ^~~
../../../src/gmxlib/splitter.c:753:27: warning: unused variable 'nra' [-Wunused-variable]
   int ftype,nvsite_constr,nra,nrd;
                           ^~~
../../../src/gmxlib/splitter.c:753:13: warning: unused variable 'nvsite_constr' [-Wunused-variable]
   int ftype,nvsite_constr,nra,nrd;
             ^~~~~~~~~~~~~
../../../src/gmxlib/splitter.c:753:7: warning: unused variable 'ftype' [-Wunused-variable]
   int ftype,nvsite_constr,nra,nrd;
       ^~~~~
../../../src/gmxlib/splitter.c:748:59: warning: unused variable 'nodeid' [-Wunused-variable]
   int     natoms,i,j,k,mj,atom,maxatom,sstart,send,bstart,nodeid;
                                                           ^~~~~~
../../../src/gmxlib/splitter.c:748:52: warning: unused variable 'bstart' [-Wunused-variable]
   int     natoms,i,j,k,mj,atom,maxatom,sstart,send,bstart,nodeid;
                                                    ^~~~~~
../../../src/gmxlib/splitter.c:748:47: warning: unused variable 'send' [-Wunused-variable]
   int     natoms,i,j,k,mj,atom,maxatom,sstart,send,bstart,nodeid;
                                               ^~~~
../../../src/gmxlib/splitter.c:748:40: warning: unused variable 'sstart' [-Wunused-variable]
   int     natoms,i,j,k,mj,atom,maxatom,sstart,send,bstart,nodeid;
                                        ^~~~~~
../../../src/gmxlib/splitter.c:748:32: warning: unused variable 'maxatom' [-Wunused-variable]
   int     natoms,i,j,k,mj,atom,maxatom,sstart,send,bstart,nodeid;
                                ^~~~~~~
../../../src/gmxlib/splitter.c:748:18: warning: unused variable 'i' [-Wunused-variable]
   int     natoms,i,j,k,mj,atom,maxatom,sstart,send,bstart,nodeid;
                  ^
At top level:
../../../src/gmxlib/splitter.c:726:17: warning: 'block2blocka' defined but not used [-Wunused-function]
 static t_blocka block2blocka(t_block *block)
                 ^~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o libxdrf.lo ../../../src/gmxlib/libxdrf.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/libxdrf.c  -fPIC -DPIC -o .libs/libxdrf.o
In file included from ../../../include/xdrf.h:41,
                 from ../../../src/gmxlib/libxdrf.c:46:
../../../src/gmxlib/libxdrf.c:145:10: warning: return type defaults to 'int' [-Wimplicit-int]
 F77_FUNC(xdrfshort,XDRFSHORT)(int *xdrid, short *sp, int *ret)
          ^~~~~~~~~
../../src/config.h:28:29: note: in definition of macro 'F77_FUNC'
 #define F77_FUNC(name,NAME) name ## _
                             ^~~~
../../../src/gmxlib/libxdrf.c: In function 'xdr3dfcoord':
../../../src/gmxlib/libxdrf.c:705:9: warning: unused variable 'rc' [-Wunused-variable]
     int rc;
         ^~
../../../src/gmxlib/libxdrf.c: In function 'xtc_get_next_frame_start':
../../../src/gmxlib/libxdrf.c:1374:9: warning: unused variable 'inp' [-Wunused-variable]
     int inp;
         ^~~
../../../src/gmxlib/libxdrf.c: In function 'xdr_xtc_seek_time':
../../../src/gmxlib/libxdrf.c:1522:9: warning: unused variable 'res' [-Wunused-variable]
     int res;
         ^~~
../../../src/gmxlib/libxdrf.c: In function 'xtc_get_last_frame_number':
../../../src/gmxlib/libxdrf.c:1691:9: warning: unused variable 'res' [-Wunused-variable]
     int res;
         ^~~
../../../src/gmxlib/libxdrf.c: In function 'xdrfshort_':
../../../src/gmxlib/libxdrf.c:149:1: warning: control reaches end of non-void function [-Wreturn-type]
 }
 ^
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/libxdrf.c:45:
At top level:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o tpxio.lo ../../../src/gmxlib/tpxio.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/tpxio.c  -fPIC -DPIC -o .libs/tpxio.o
../../../src/gmxlib/tpxio.c: In function 'do_ilist':
../../../src/gmxlib/tpxio.c:987:10: warning: unused variable 'k' [-Wunused-variable]
   int  i,k,idum;
          ^
../../../src/gmxlib/tpxio.c: In function 'do_ffparams':
../../../src/gmxlib/tpxio.c:1008:15: warning: unused variable 'j' [-Wunused-variable]
   int  idum,i,j,k;
               ^
../../../src/gmxlib/tpxio.c: In function 'do_ilists':
../../../src/gmxlib/tpxio.c:1061:8: warning: unused variable 'bDum' [-Wunused-variable]
   bool bDum=TRUE,bClear;
        ^~~~
../../../src/gmxlib/tpxio.c:1060:13: warning: unused variable 'renum' [-Wunused-variable]
   int i,j,k,renum[F_NRE];
             ^~~~~
../../../src/gmxlib/tpxio.c:1060:7: warning: unused variable 'i' [-Wunused-variable]
   int i,j,k,renum[F_NRE];
       ^
../../../src/gmxlib/tpxio.c: In function 'do_groups':
../../../src/gmxlib/tpxio.c:1276:10: warning: unused variable 'n' [-Wunused-variable]
   int  g,n,i;
          ^
../../../src/gmxlib/tpxio.c: In function 'do_moltype':
../../../src/gmxlib/tpxio.c:1393:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/gmxlib/tpxio.c: In function 'do_molblock':
../../../src/gmxlib/tpxio.c:1420:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/gmxlib/tpxio.c: In function 'do_mtop':
../../../src/gmxlib/tpxio.c:1547:14: warning: unused variable 'i' [-Wunused-variable]
   int  mt,mb,i;
              ^
../../../src/gmxlib/tpxio.c: In function 'read_tpx_top':
../../../src/gmxlib/tpxio.c:2005:15: warning: unused variable 'ltop' [-Wunused-variable]
   t_topology *ltop;
               ^~~~
../../../src/gmxlib/tpxio.c: In function 'read_tps_conf':
../../../src/gmxlib/tpxio.c:2035:17: warning: unused variable 'topconv' [-Wunused-variable]
   t_topology   *topconv;
                 ^~~~~~~
In file included from ../../../src/gmxlib/tpxio.c:61:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/tpxio.c:61:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/gmxlib/tpxio.c:60:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_arpack.lo ../../../src/gmxlib/gmx_arpack.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/gmx_arpack.c  -fPIC -DPIC -o .libs/gmx_arpack.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -version-info 5:0:0 -lgslcblas  -o libgmx_mpi_d.la -rpath /usr/lib 3dview.lo atomprop.lo bondfree.lo calcgrid.lo calch.lo checkpoint.lo confio.lo copyrite.lo disre.lo do_fit.lo enxio.lo ewald_util.lo gmx_fatal.lo ffscanf.lo filenm.lo futil.lo gbutil.lo gmxfio.lo ifunc.lo index.lo cinvsqrtdata.lo invblock.lo macros.lo orires.lo sparsematrix.lo main.lo maths.lo matio.lo mshift.lo mtop_util.lo mtxio.lo mvdata.lo names.lo network.lo nrama.lo nrjac.lo nrnb.lo pargs.lo pbc.lo pdbio.lo princ.lo rando.lo random.lo gmx_random.lo rbin.lo readinp.lo replace.lo rmpbc.lo shift_util.lo sortwater.lo smalloc.lo statutil.lo strdb.lo string2.lo symtab.lo topsort.lo tpxio.lo trnio.lo trxio.lo txtdump.lo typedefs.lo viewit.lo wgms.lo wman.lo writeps.lo xdrd.lo xtcio.lo xvgr.lo libxdrf.lo gmx_arpack.lo dihres.lo tcontrol.lo splitter.lo gmx_cyclecounter.lo nonbonded/libnonbonded.la gmx_blas/libblas.la        gmx_lapack/liblapack.la -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
mpicc -shared  .libs/3dview.o .libs/atomprop.o .libs/bondfree.o .libs/calcgrid.o .libs/calch.o .libs/checkpoint.o .libs/confio.o .libs/copyrite.o .libs/disre.o .libs/do_fit.o .libs/enxio.o .libs/ewald_util.o .libs/gmx_fatal.o .libs/ffscanf.o .libs/filenm.o .libs/futil.o .libs/gbutil.o .libs/gmxfio.o .libs/ifunc.o .libs/index.o .libs/cinvsqrtdata.o .libs/invblock.o .libs/macros.o .libs/orires.o .libs/sparsematrix.o .libs/main.o .libs/maths.o .libs/matio.o .libs/mshift.o .libs/mtop_util.o .libs/mtxio.o .libs/mvdata.o .libs/names.o .libs/network.o .libs/nrama.o .libs/nrjac.o .libs/nrnb.o .libs/pargs.o .libs/pbc.o .libs/pdbio.o .libs/princ.o .libs/rando.o .libs/random.o .libs/gmx_random.o .libs/rbin.o .libs/readinp.o .libs/replace.o .libs/rmpbc.o .libs/shift_util.o .libs/sortwater.o .libs/smalloc.o .libs/statutil.o .libs/strdb.o .libs/string2.o .libs/symtab.o .libs/topsort.o .libs/tpxio.o .libs/trnio.o .libs/trxio.o .libs/txtdump.o .libs/typedefs.o .libs/viewit.o .libs/wgms.o .libs/wman.o .libs/writeps.o .libs/xdrd.o .libs/xtcio.o .libs/xvgr.o .libs/libxdrf.o .libs/gmx_arpack.o .libs/dihres.o .libs/tcontrol.o .libs/splitter.o .libs/gmx_cyclecounter.o -Wl,--whole-archive nonbonded/.libs/libnonbonded.a gmx_blas/.libs/libblas.a gmx_lapack/.libs/liblapack.a -Wl,--no-whole-archive  -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lgslcblas -lgsl -lfftw3 -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath  -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wl,-soname -Wl,libgmx_mpi_d.so.5 -o .libs/libgmx_mpi_d.so.5.0.0
(cd .libs && rm -f libgmx_mpi_d.so.5 && ln -s libgmx_mpi_d.so.5.0.0 libgmx_mpi_d.so.5)
(cd .libs && rm -f libgmx_mpi_d.so && ln -s libgmx_mpi_d.so.5.0.0 libgmx_mpi_d.so)
creating libgmx_mpi_d.la
(cd .libs && rm -f libgmx_mpi_d.la && ln -s ../libgmx_mpi_d.la libgmx_mpi_d.la)
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
Making all in mdlib
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o domdec_network.lo ../../../src/mdlib/domdec_network.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/domdec_network.c  -fPIC -DPIC -o .libs/domdec_network.o
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o calcmu.lo ../../../src/mdlib/calcmu.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/calcmu.c  -fPIC -DPIC -o .libs/calcmu.o
In file included from ../../../src/mdlib/calcmu.c:45:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/calcmu.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o domdec_setup.lo ../../../src/mdlib/domdec_setup.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/domdec_setup.c  -fPIC -DPIC -o .libs/domdec_setup.o
../../../src/mdlib/domdec_setup.c: In function 'guess_npme':
../../../src/mdlib/domdec_setup.c:83:13: warning: unused variable 'try' [-Wunused-variable]
  t_inputrec try;
             ^~~
../../../src/mdlib/domdec_setup.c:82:16: warning: unused variable 'nky' [-Wunused-variable]
  int  npme,nkx,nky,ndiv,*div,*mdiv,ldiv;
                ^~~
../../../src/mdlib/domdec_setup.c:82:12: warning: unused variable 'nkx' [-Wunused-variable]
  int  npme,nkx,nky,ndiv,*div,*mdiv,ldiv;
            ^~~
../../../src/mdlib/domdec_setup.c: In function 'assign_factors':
../../../src/mdlib/domdec_setup.c:329:13: warning: unused variable 'z' [-Wunused-variable]
     int x,y,z,i;
             ^
../../../src/mdlib/domdec_setup.c: In function 'dd_choose_grid':
../../../src/mdlib/domdec_setup.c:493:19: warning: unused variable 'nky' [-Wunused-variable]
     int  npme,nkx,nky;
                   ^~~
../../../src/mdlib/domdec_setup.c:493:15: warning: unused variable 'nkx' [-Wunused-variable]
     int  npme,nkx,nky;
               ^~~
../../../src/mdlib/domdec_setup.c:493:10: warning: unused variable 'npme' [-Wunused-variable]
     int  npme,nkx,nky;
          ^~~~
In file included from ../../../src/mdlib/domdec_setup.c:32:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/domdec_setup.c:32:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/pme.h:46,
                 from ../../../src/mdlib/domdec_setup.c:29:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o calcvir.lo ../../../src/mdlib/calcvir.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/calcvir.c  -fPIC -DPIC -o .libs/calcvir.o
../../../src/mdlib/calcvir.c:160:13: warning: 'lo_fcv2' defined but not used [-Wunused-function]
 static void lo_fcv2(int i0,int i1,
             ^~~~~~~
../../../src/mdlib/calcvir.c:47:13: warning: 'dprod1' defined but not used [-Wunused-function]
 static void dprod1(rvec vir,real x,rvec f)
             ^~~~~~
In file included from ../../../src/mdlib/calcvir.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/calcvir.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/mdlib/calcvir.c:42:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o coupling.lo ../../../src/mdlib/coupling.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/coupling.c  -fPIC -DPIC -o .libs/coupling.o
../../../src/mdlib/coupling.c: In function 'berendsen_pcoupl':
../../../src/mdlib/coupling.c:267:11: warning: unused variable 'ptr' [-Wunused-variable]
   char   *ptr,buf[STRLEN];
           ^~~
In file included from ../../../include/pull.h:44,
                 from ../../../include/update.h:49,
                 from ../../../src/mdlib/coupling.c:42:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../include/pull.h:44,
                 from ../../../include/update.h:49,
                 from ../../../src/mdlib/coupling.c:42:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/update.h:48,
                 from ../../../src/mdlib/coupling.c:42:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o ebin.lo ../../../src/mdlib/ebin.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/ebin.c  -fPIC -DPIC -o .libs/ebin.o
../../../src/mdlib/ebin.c: In function 'add_ebin':
../../../src/mdlib/ebin.c:89:18: warning: unused variable 'sigma' [-Wunused-variable]
   double   e,sum,sigma,invmm,diff;
                  ^~~~~
../../../src/mdlib/ebin.c:89:14: warning: unused variable 'sum' [-Wunused-variable]
   double   e,sum,sigma,invmm,diff;
              ^~~
In file included from ../../../src/mdlib/ebin.c:51:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/mdlib/ebin.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o constr.lo ../../../src/mdlib/constr.c
mkdir .libs
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/constr.c  -fPIC -DPIC -o .libs/constr.o
../../../src/mdlib/constr.c: In function 'too_many_constraint_warnings':
../../../src/mdlib/constr.c:132:9: warning: unused variable 'abort' [-Wunused-variable]
   char *abort="- aborting to avoid logfile runaway.\n"
         ^~~~~
../../../src/mdlib/constr.c: In function 'constrain':
../../../src/mdlib/constr.c:234:11: warning: unused variable 'ncons' [-Wunused-variable]
   int     ncons,error;
           ^~~~~
../../../src/mdlib/constr.c: In function 'init_constraints':
../../../src/mdlib/constr.c:772:37: warning: unused variable 'natoms' [-Wunused-variable]
   int  ncon,nset,nmol,settle_type,i,natoms,mt,nflexcon;
                                     ^~~~~~
../../../src/mdlib/constr.c: In function 'inter_charge_group_constraints':
../../../src/mdlib/constr.c:903:8: warning: unused variable 'nat' [-Wunused-variable]
   int  nat,*at2cg,cg,a,i;
        ^~~
At top level:
../../../src/mdlib/constr.c:110:12: warning: 'icomp' defined but not used [-Wunused-function]
 static int icomp(const void *p1, const void *p2)
            ^~~~~
In file included from ../../../src/mdlib/constr.c:53:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
In file included from ../../../include/pull.h:44,
                 from ../../../include/mdrun.h:56,
                 from ../../../src/mdlib/constr.c:45:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../include/pull.h:44,
                 from ../../../include/mdrun.h:56,
                 from ../../../src/mdlib/constr.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/mdrun.h:50,
                 from ../../../src/mdlib/constr.c:45:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/constr.c:42:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o ewald.lo ../../../src/mdlib/ewald.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/ewald.c  -fPIC -DPIC -o .libs/ewald.o
In file included from ../../../src/mdlib/ewald.c:44:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/mdlib/ewald.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/ewald.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o domdec_con.lo ../../../src/mdlib/domdec_con.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/domdec_con.c  -fPIC -DPIC -o .libs/domdec_con.o
../../../src/mdlib/domdec_con.c: In function 'dd_make_local_vsites':
../../../src/mdlib/domdec_con.c:925:25: warning: unused variable 'gat' [-Wunused-variable]
     int  ftype,nral,i,j,gat,a;
                         ^~~
../../../src/mdlib/domdec_con.c: In function 'init_domdec_vsites':
../../../src/mdlib/domdec_con.c:1047:31: warning: unused variable 'dc' [-Wunused-variable]
     gmx_domdec_constraints_t *dc;
                               ^~
In file included from ../../../src/mdlib/domdec_con.c:25:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/domdec_con.c:25:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o init.lo ../../../src/mdlib/init.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/init.c  -fPIC -DPIC -o .libs/init.o
In file included from ../../../include/statutil.h:51,
                 from ../../../src/mdlib/init.c:52:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../include/mdrun.h:50,
                 from ../../../src/mdlib/init.c:51:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/init.c:44:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/init.c:44:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o ghat.lo ../../../src/mdlib/ghat.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/ghat.c  -fPIC -DPIC -o .libs/ghat.o
In file included from ../../../include/pppm.h:46,
                 from ../../../src/mdlib/ghat.c:47:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/mdlib/ghat.c:44:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/ghat.c:44:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o fftgrid.lo ../../../src/mdlib/fftgrid.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/fftgrid.c  -fPIC -DPIC -o .libs/fftgrid.o
In file included from ../../../include/fftgrid.h:46,
                 from ../../../src/mdlib/fftgrid.c:51:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o mdatom.lo ../../../src/mdlib/mdatom.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/mdatom.c  -fPIC -DPIC -o .libs/mdatom.o
../../../src/mdlib/mdatom.c: In function 'init_mdatoms':
../../../src/mdlib/mdatom.c:56:12: warning: unused variable 'ilist' [-Wunused-variable]
   t_ilist *ilist;
            ^~~~~
../../../src/mdlib/mdatom.c:51:17: warning: unused variable 'nmol' [-Wunused-variable]
   int    mb,a,g,nmol;
                 ^~~~
../../../src/mdlib/mdatom.c:51:15: warning: unused variable 'g' [-Wunused-variable]
   int    mb,a,g,nmol;
               ^
../../../src/mdlib/mdatom.c:51:10: warning: unused variable 'mb' [-Wunused-variable]
   int    mb,a,g,nmol;
          ^~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o mvxvf.lo ../../../src/mdlib/mvxvf.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/mvxvf.c  -fPIC -DPIC -o .libs/mvxvf.o
In file included from ../../../src/mdlib/mvxvf.c:52:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/mvxvf.c:52:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o domdec_top.lo ../../../src/mdlib/domdec_top.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/domdec_top.c  -fPIC -DPIC -o .libs/domdec_top.o
../../../src/mdlib/domdec_top.c: In function 'print_missing_interactions_mb':
../../../src/mdlib/domdec_top.c:113:56: warning: unused variable 'a_gl' [-Wunused-variable]
     int ftype,ftype_j,nral,i,j_mol,j,k,a0,a0_mol,mol,a,a_gl;
                                                        ^~~~
../../../src/mdlib/domdec_top.c:113:38: warning: unused variable 'k' [-Wunused-variable]
     int ftype,ftype_j,nral,i,j_mol,j,k,a0,a0_mol,mol,a,a_gl;
                                      ^
../../../src/mdlib/domdec_top.c: In function 'global_atomnr_to_moltype_ind':
../../../src/mdlib/domdec_top.c:349:7: warning: unused variable 'molb' [-Wunused-variable]
   int molb;
       ^~~~
../../../src/mdlib/domdec_top.c: In function 'count_excls':
../../../src/mdlib/domdec_top.c:364:11: warning: unused variable 'n_inter' [-Wunused-variable]
     int n,n_inter,cg,at0,at1,at,excl,atj;
           ^~~~~~~
../../../src/mdlib/domdec_top.c: In function 'dd_make_reverse_top':
../../../src/mdlib/domdec_top.c:611:19: warning: unused variable 'n_recursive_vsite' [-Wunused-variable]
     int mb,natoms,n_recursive_vsite,nexcl,nexcl_icg,a;
                   ^~~~~~~~~~~~~~~~~
../../../src/mdlib/domdec_top.c: In function 'add_vsite':
../../../src/mdlib/domdec_top.c:760:37: warning: unused variable 'iatoms_r' [-Wunused-variable]
     t_iatom tiatoms[1+MAXATOMLIST],*iatoms_r;
                                     ^~~~~~~~
../../../src/mdlib/domdec_top.c: In function 'dd_make_local_top':
../../../src/mdlib/domdec_top.c:1408:10: warning: unused variable 'bUniqueExcl' [-Wunused-variable]
     bool bUniqueExcl,bRCheckMB,bRCheck2B,bRCheckExcl;
          ^~~~~~~~~~~
../../../src/mdlib/domdec_top.c: In function 'check_link':
../../../src/mdlib/domdec_top.c:1590:12: warning: unused variable 'aj' [-Wunused-variable]
     int  k,aj;
            ^~
In file included from ../../../src/mdlib/domdec_top.c:31:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/domdec_top.c:31:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o force.lo ../../../src/mdlib/force.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/force.c  -fPIC -DPIC -o .libs/force.o
../../../src/mdlib/force.c: In function 'check_solvent_cg':
../../../src/mdlib/force.c:162:23: warning: unused variable 'excl' [-Wunused-variable]
     const t_blocka *  excl;
                       ^~~~
../../../src/mdlib/force.c: In function 'check_solvent':
../../../src/mdlib/force.c:406:23: warning: variable 'mols' set but not used [-Wunused-but-set-variable]
     const t_block *   mols;
                       ^~~~
../../../src/mdlib/force.c: In function 'set_avcsixtwelve':
../../../src/mdlib/force.c:687:46: warning: unused variable 'n' [-Wunused-variable]
     int    mb,nmol,nmolc,i,j,tpi,tpj,j1,j2,k,n,nexcl,q;
                                              ^
../../../src/mdlib/force.c: In function 'init_forcerec':
../../../src/mdlib/force.c:1048:16: warning: variable 'nbl' set but not used [-Wunused-but-set-variable]
     t_nblists *nbl;
                ^~~
../../../src/mdlib/force.c:1043:26: warning: unused variable 'ngrp' [-Wunused-variable]
     int     i,j,m,natoms,ngrp,negp_pp,negptable,egi,egj;
                          ^~~~
../../../src/mdlib/force.c:1043:15: warning: unused variable 'j' [-Wunused-variable]
     int     i,j,m,natoms,ngrp,negp_pp,negptable,egi,egj;
               ^
../../../src/mdlib/force.c: In function 'do_force_lowlevel':
../../../src/mdlib/force.c:1540:13: warning: unused variable 'bDoEpot' [-Wunused-variable]
     bool    bDoEpot,bSepDVDL,bSB;
             ^~~~~~~
../../../src/mdlib/force.c:1539:15: warning: unused variable 'nit' [-Wunused-variable]
     int     i,nit,status;
               ^~~
In file included from ../../../src/mdlib/force.c:69:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/pull.h:44,
                 from ../../../include/mdrun.h:56,
                 from ../../../src/mdlib/force.c:64:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../include/pull.h:44,
                 from ../../../include/mdrun.h:56,
                 from ../../../src/mdlib/force.c:64:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/pppm.h:46,
                 from ../../../src/mdlib/force.c:62:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o mdebin.lo ../../../src/mdlib/mdebin.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/mdebin.c  -fPIC -DPIC -o .libs/mdebin.o
../../../src/mdlib/mdebin.c: In function 'print_ebin':
../../../src/mdlib/mdebin.c:530:31: warning: unused variable 'nor' [-Wunused-variable]
   int         i,j,n,ni,nj,ndr,nor;
                               ^~~
../../../src/mdlib/mdebin.c:530:27: warning: unused variable 'ndr' [-Wunused-variable]
   int         i,j,n,ni,nj,ndr,nor;
                           ^~~
In file included from ../../../src/mdlib/mdebin.c:48:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/mdebin.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o perf_est.lo ../../../src/mdlib/perf_est.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/perf_est.c  -fPIC -DPIC -o .libs/perf_est.o
../../../src/mdlib/perf_est.c: In function 'n_bonded_dx':
../../../src/mdlib/perf_est.c:62:2: warning: label 'F_CONNBONDS' defined but not used [-Wunused-label]
  F_CONNBONDS: ndxb = 0; break;
  ^~~~~~~~~~~
../../../src/mdlib/perf_est.c:61:2: warning: label 'F_POSRES' defined but not used [-Wunused-label]
  F_POSRES:    ndxb = 1; break;
  ^~~~~~~~
../../../src/mdlib/perf_est.c: In function 'pme_load_estimate':
../../../src/mdlib/perf_est.c:89:21: warning: unused variable 'fljtab' [-Wunused-variable]
   float fq,fqlj,flj,fljtab,fqljw,fqw,fqspread,ffft,fbond;
                     ^~~~~~
In file included from ../../../src/mdlib/perf_est.c:41:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/perf_est.c:41:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o edsam.lo ../../../src/mdlib/edsam.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/edsam.c  -fPIC -DPIC -o .libs/edsam.o
../../../src/mdlib/edsam.c:983:13: warning: 'get_flood_energies' defined but not used [-Wunused-function]
 static void get_flood_energies(t_edpar *edi, real Vfl[],int nnames)
             ^~~~~~~~~~~~~~~~~~
../../../src/mdlib/edsam.c:964:13: warning: 'get_flood_enx_names' defined but not used [-Wunused-function]
 static void get_flood_enx_names(t_edpar *edi, char** names, int *nnames)  /* get header of energies */
             ^~~~~~~~~~~~~~~~~~~
../../../src/mdlib/edsam.c:459:13: warning: 'dump_mat' defined but not used [-Wunused-function]
 static void dump_mat(FILE* out, int dim, double** mat)
             ^~~~~~~~
../../../src/mdlib/edsam.c:448:13: warning: 'dump_rvec' defined but not used [-Wunused-function]
 static void dump_rvec(FILE *out, int dim, rvec *x)
             ^~~~~~~~~
../../../src/mdlib/edsam.c:439:13: warning: 'dump_rotmat' defined but not used [-Wunused-function]
 static void dump_rotmat(FILE* out,matrix rotmat)
             ^~~~~~~~~~~
../../../src/mdlib/edsam.c:387:13: warning: 'dump_edi' defined but not used [-Wunused-function]
 static void dump_edi(t_edpar *edpars, t_commrec *cr, int nr_edi)
             ^~~~~~~~
../../../src/mdlib/edsam.c:316:13: warning: 'dump_xcoll' defined but not used [-Wunused-function]
 static void dump_xcoll(t_edpar *edi, struct t_do_edsam *buf, t_commrec *cr, int step)
             ^~~~~~~~~~
In file included from ../../../include/mdrun.h:50,
                 from ../../../src/mdlib/edsam.c:53:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/edsam.c:49:
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/edsam.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nsgrid.lo ../../../src/mdlib/nsgrid.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/nsgrid.c  -fPIC -DPIC -o .libs/nsgrid.o
../../../src/mdlib/nsgrid.c: In function 'init_grid':
../../../src/mdlib/nsgrid.c:181:10: warning: unused variable 'm' [-Wunused-variable]
   int  d,m;
          ^
../../../src/mdlib/nsgrid.c:181:8: warning: unused variable 'd' [-Wunused-variable]
   int  d,m;
        ^
../../../src/mdlib/nsgrid.c: In function 'grid_first':
../../../src/mdlib/nsgrid.c:278:10: warning: unused variable 'cx' [-Wunused-variable]
   ivec   cx;
          ^~
../../../src/mdlib/nsgrid.c: In function 'fill_grid':
../../../src/mdlib/nsgrid.c:421:10: warning: variable 'nrx' set but not used [-Wunused-but-set-variable]
   int    nrx,nry,nrz;
          ^~~
In file included from ../../../src/mdlib/nsgrid.c:47:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/nsgrid.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o pme_pp.lo ../../../src/mdlib/pme_pp.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/pme_pp.c  -fPIC -DPIC -o .libs/pme_pp.o
In file included from ../../../include/pme.h:46,
                 from ../../../src/mdlib/pme_pp.c:49:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/mdlib/pme_pp.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/pme_pp.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o pppm.lo ../../../src/mdlib/pppm.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/pppm.c  -fPIC -DPIC -o .libs/pppm.o
../../../src/mdlib/pppm.c:616:12: warning: 'gmx_pppm_opt_do' defined but not used [-Wunused-function]
 static int gmx_pppm_opt_do(FILE *log,       gmx_pme_t pme,
            ^~~~~~~~~~~~~~~
In file included from ../../../include/mdrun.h:50,
                 from ../../../src/mdlib/pppm.c:53:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../include/pppm.h:46,
                 from ../../../src/mdlib/pppm.c:51:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/mdlib/pppm.c:45:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/pppm.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o pme.lo ../../../src/mdlib/pme.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/pme.c  -fPIC -DPIC -o .libs/pme.o
../../../src/mdlib/pme.c: In function 'init_atomcomm':
../../../src/mdlib/pme.c:1441:22: warning: unused variable 'pgc' [-Wunused-variable]
     pme_grid_comm_t *pgc;
                      ^~~
../../../src/mdlib/pme.c:1440:12: warning: unused variable 'nk' [-Wunused-variable]
     int nn,nk;
            ^~
../../../src/mdlib/pme.c:1440:9: warning: unused variable 'nn' [-Wunused-variable]
     int nn,nk;
         ^~
../../../src/mdlib/pme.c:1439:27: warning: unused variable 'i' [-Wunused-variable]
     int lbnd,rbnd,maxlr,b,i;
                           ^
../../../src/mdlib/pme.c:1439:25: warning: unused variable 'b' [-Wunused-variable]
     int lbnd,rbnd,maxlr,b,i;
                         ^
../../../src/mdlib/pme.c:1439:19: warning: unused variable 'maxlr' [-Wunused-variable]
     int lbnd,rbnd,maxlr,b,i;
                   ^~~~~
../../../src/mdlib/pme.c:1439:14: warning: unused variable 'rbnd' [-Wunused-variable]
     int lbnd,rbnd,maxlr,b,i;
              ^~~~
../../../src/mdlib/pme.c:1439:9: warning: unused variable 'lbnd' [-Wunused-variable]
     int lbnd,rbnd,maxlr,b,i;
         ^~~~
../../../src/mdlib/pme.c: In function 'gmx_pme_init':
../../../src/mdlib/pme.c:1541:25: warning: unused variable 'maxlr' [-Wunused-variable]
     int b,d,i,lbnd,rbnd,maxlr;
                         ^~~~~
../../../src/mdlib/pme.c:1541:20: warning: unused variable 'rbnd' [-Wunused-variable]
     int b,d,i,lbnd,rbnd,maxlr;
                    ^~~~
../../../src/mdlib/pme.c:1541:15: warning: unused variable 'lbnd' [-Wunused-variable]
     int b,d,i,lbnd,rbnd,maxlr;
               ^~~~
../../../src/mdlib/pme.c:1541:11: warning: unused variable 'd' [-Wunused-variable]
     int b,d,i,lbnd,rbnd,maxlr;
           ^
../../../src/mdlib/pme.c:1541:9: warning: unused variable 'b' [-Wunused-variable]
     int b,d,i,lbnd,rbnd,maxlr;
         ^
At top level:
../../../src/mdlib/pme.c:198:13: warning: 'pr_grid_dist' defined but not used [-Wunused-function]
 static void pr_grid_dist(FILE *fp,char *title,t_fftgrid *grid)
             ^~~~~~~~~~~~
In file included from ../../../src/mdlib/pme.c:81:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/pme.c:71:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/mdlib/pme.c:70:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/pme.c:70:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o partdec.lo ../../../src/mdlib/partdec.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/partdec.c  -fPIC -DPIC -o .libs/partdec.o
../../../src/mdlib/partdec.c: In function 'gmx_tx':
../../../src/mdlib/partdec.c:83:14: warning: unused variable 'status' [-Wunused-variable]
   MPI_Status status;
              ^~~~~~
../../../src/mdlib/partdec.c:82:18: warning: unused variable 'flag' [-Wunused-variable]
   int        tag,flag;
                  ^~~~
../../../src/mdlib/partdec.c: In function 'pr_idef_division':
../../../src/mdlib/partdec.c:343:15: warning: variable 'nr' set but not used [-Wunused-but-set-variable]
   int i,ftype,nr,nra,m0,m1;
               ^~
../../../src/mdlib/partdec.c: In function 'create_vsitelist':
../../../src/mdlib/partdec.c:477:7: warning: unused variable 'minidx' [-Wunused-variable]
   int minidx;
       ^~~~~~
../../../src/mdlib/partdec.c: In function 'setup_parallel_vsites':
../../../src/mdlib/partdec.c:511:15: warning: unused variable 'k' [-Wunused-variable]
   int i,inr,j,k,ftype;
               ^
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o pullutil.lo ../../../src/mdlib/pullutil.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/pullutil.c  -fPIC -DPIC -o .libs/pullutil.o
../../../src/mdlib/pullutil.c: In function 'pull_set_pbcatom':
../../../src/mdlib/pullutil.c:85:9: warning: unused variable 'm' [-Wunused-variable]
   int a,m;
         ^
../../../src/mdlib/pullutil.c: In function 'pull_calc_coms':
../../../src/mdlib/pullutil.c:278:9: warning: unused variable 'xx' [-Wunused-variable]
   rvec *xx[2],x_pbc={0,0,0},dx;
         ^~
In file included from ../../../src/mdlib/pullutil.c:46:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/pullutil.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/mdlib/pullutil.c:45:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o rf_util.lo ../../../src/mdlib/rf_util.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/rf_util.c  -fPIC -DPIC -o .libs/rf_util.o
../../../src/mdlib/rf_util.c: In function 'RF_excl_correction':
../../../src/mdlib/rf_util.c:59:10: warning: unused variable 'top' [-Wunused-variable]
   int    top,i,j,j1,j2,k,ki;
          ^~~
In file included from ../../../src/mdlib/rf_util.c:46:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/rf_util.c:44:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/rf_util.c:44:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/mdlib/rf_util.c:42:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o pull.lo ../../../src/mdlib/pull.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/pull.c  -fPIC -DPIC -o .libs/pull.o
../../../src/mdlib/pull.c: In function 'apply_forces_grp':
../../../src/mdlib/pull.c:155:20: warning: variable 'end' set but not used [-Wunused-but-set-variable]
   int i,ii,m,start,end;
                    ^~~
../../../src/mdlib/pull.c: In function 'do_constraint':
../../../src/mdlib/pull.c:283:22: warning: unused variable 'mass' [-Wunused-variable]
   double lambda, rm, mass, invdt=0;
                      ^~~~
../../../src/mdlib/pull.c:282:10: warning: unused variable 'd0' [-Wunused-variable]
   double d0,inpr;
          ^~
../../../src/mdlib/pull.c: In function 'init_pull_group_index':
../../../src/mdlib/pull.c:779:16: warning: variable 'ga2la' set but not used [-Wunused-but-set-variable]
   gmx_ga2la_t *ga2la=NULL;
                ^~~~~
In file included from ../../../include/mdrun.h:50,
                 from ../../../src/mdlib/pull.c:60:
At top level:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/pull.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/pull.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/mdlib/pull.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
../../../src/mdlib/pull.c: In function 'open_pull_out.part.3':
../../../src/mdlib/pull.c:134:19: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=]
    sprintf(buf,"%d",g);
                   ^
In file included from /usr/include/stdio.h:862,
                 from ../../../src/mdlib/pull.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 2 and 11 bytes into a destination of size 10
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/mdlib/pull.c:128:23: warning: ' ' directive writing 1 byte into a region of size between 0 and 9 [-Wformat-overflow=]
        sprintf(buf,"%d %s%c",g,(bCoord && g > 0)?"d":"",'X'+m);
                       ^
In file included from /usr/include/stdio.h:862,
                 from ../../../src/mdlib/pull.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 4 and 14 bytes into a destination of size 10
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o shakef.lo ../../../src/mdlib/shakef.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/shakef.c  -fPIC -DPIC -o .libs/shakef.o
../../../src/mdlib/shakef.c: In function 'cshake':
../../../src/mdlib/shakef.c:79:19: warning: unused variable 'tjz' [-Wunused-variable]
   real    tjx,tjy,tjz;
                   ^~~
../../../src/mdlib/shakef.c:79:15: warning: unused variable 'tjy' [-Wunused-variable]
   real    tjx,tjy,tjz;
               ^~~
../../../src/mdlib/shakef.c:79:11: warning: unused variable 'tjx' [-Wunused-variable]
   real    tjx,tjy,tjz;
           ^~~
../../../src/mdlib/shakef.c:78:19: warning: unused variable 'tiz' [-Wunused-variable]
   real    tix,tiy,tiz;
                   ^~~
../../../src/mdlib/shakef.c:78:15: warning: unused variable 'tiy' [-Wunused-variable]
   real    tix,tiy,tiz;
               ^~~
../../../src/mdlib/shakef.c:78:11: warning: unused variable 'tix' [-Wunused-variable]
   real    tix,tiy,tiz;
           ^~~
At top level:
../../../src/mdlib/shakef.c:51:13: warning: 'pv' defined but not used [-Wunused-function]
 static void pv(FILE *log,char *s,rvec x)
             ^~
In file included from ../../../src/mdlib/shakef.c:46:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/shakef.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o ns.lo ../../../src/mdlib/ns.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/ns.c  -fPIC -DPIC -o .libs/ns.o
../../../src/mdlib/ns.c: In function 'new_i_nblist':
../../../src/mdlib/ns.c:394:20: warning: unused variable 'nshift' [-Wunused-variable]
     int    i,k,nri,nshift;
                    ^~~~~~
../../../src/mdlib/ns.c:394:14: warning: unused variable 'k' [-Wunused-variable]
     int    i,k,nri,nshift;
              ^
../../../src/mdlib/ns.c:394:12: warning: unused variable 'i' [-Wunused-variable]
     int    i,k,nri,nshift;
            ^
../../../src/mdlib/ns.c: In function 'put_in_list':
../../../src/mdlib/ns.c:546:25: warning: unused variable 'rlj' [-Wunused-variable]
     real      qi,qiB,qq,rlj;
                         ^~~
../../../src/mdlib/ns.c:546:22: warning: unused variable 'qq' [-Wunused-variable]
     real      qi,qiB,qq,rlj;
                      ^~
../../../src/mdlib/ns.c:541:23: warning: unused variable 'len' [-Wunused-variable]
     int       i0,nicg,len;
                       ^~~
../../../src/mdlib/ns.c:539:39: warning: unused variable 'ind_ij' [-Wunused-variable]
     int      i,j,jcg,igid,gid,nbl_ind,ind_ij;
                                       ^~~~~~
../../../src/mdlib/ns.c: In function 'ns_inner_tric':
../../../src/mdlib/ns.c:1283:15: warning: unused variable 'nsbuf' [-Wunused-variable]
     t_ns_buf *nsbuf;
               ^~~~~
../../../src/mdlib/ns.c: In function 'ns_inner_rect':
../../../src/mdlib/ns.c:1314:15: warning: unused variable 'nsbuf' [-Wunused-variable]
     t_ns_buf *nsbuf;
               ^~~~~
../../../src/mdlib/ns.c: In function 'ns_simple_core':
../../../src/mdlib/ns.c:1365:38: warning: unused variable 'nri' [-Wunused-variable]
     int      nsearch,icg,jcg,igid,i0,nri,nn;
                                      ^~~
../../../src/mdlib/ns.c:1365:35: warning: unused variable 'i0' [-Wunused-variable]
     int      nsearch,icg,jcg,igid,i0,nri,nn;
                                   ^~
../../../src/mdlib/ns.c:1365:26: warning: unused variable 'jcg' [-Wunused-variable]
     int      nsearch,icg,jcg,igid,i0,nri,nn;
                          ^~~
../../../src/mdlib/ns.c: In function 'nsgrid_core':
../../../src/mdlib/ns.c:1674:58: warning: unused variable 'dcz' [-Wunused-variable]
     real    r2,rs2,rvdw2,rcoul2,rm2,rl2,XI,YI,ZI,dcx,dcy,dcz,tmp1,tmp2;
                                                          ^~~
../../../src/mdlib/ns.c:1674:54: warning: unused variable 'dcy' [-Wunused-variable]
     real    r2,rs2,rvdw2,rcoul2,rm2,rl2,XI,YI,ZI,dcx,dcy,dcz,tmp1,tmp2;
                                                      ^~~
../../../src/mdlib/ns.c:1674:50: warning: unused variable 'dcx' [-Wunused-variable]
     real    r2,rs2,rvdw2,rcoul2,rm2,rl2,XI,YI,ZI,dcx,dcy,dcz,tmp1,tmp2;
                                                  ^~~
../../../src/mdlib/ns.c:1673:13: warning: unused variable 'xi' [-Wunused-variable]
     rvec    xi,*cgcm,grid_offset;
             ^~
../../../src/mdlib/ns.c:1669:42: warning: unused variable 'nri' [-Wunused-variable]
     int     cg0,cg1,icg=-1,cgsnr,i0,igid,nri,naaj,max_jcg;
                                          ^~~
../../../src/mdlib/ns.c:1666:45: warning: variable 'grid_z' set but not used [-Wunused-but-set-variable]
     real    gridx,gridy,gridz,grid_x,grid_y,grid_z;
                                             ^~~~~~
../../../src/mdlib/ns.c: In function 'init_ns':
../../../src/mdlib/ns.c:2177:11: warning: unused variable 'ptr' [-Wunused-variable]
     char *ptr;
           ^~~
../../../src/mdlib/ns.c: In function 'search_neighbours':
../../../src/mdlib/ns.c:2280:23: warning: unused variable 'cg_end' [-Wunused-variable]
     int      cg_start,cg_end,start,end;
                       ^~~~~~
../../../src/mdlib/ns.c:2280:14: warning: unused variable 'cg_start' [-Wunused-variable]
     int      cg_start,cg_end,start,end;
              ^~~~~~~~
../../../src/mdlib/ns.c:2279:15: warning: unused variable 'i_egp_flags' [-Wunused-variable]
     bool     *i_egp_flags;
               ^~~~~~~~~~~
../../../src/mdlib/ns.c:2278:15: warning: unused variable 'ptr' [-Wunused-variable]
     char     *ptr;
               ^~~
../../../src/mdlib/ns.c:2274:16: warning: unused variable 'j' [-Wunused-variable]
     int      i,j,m,ngid;
                ^
../../../src/mdlib/ns.c:2274:14: warning: unused variable 'i' [-Wunused-variable]
     int      i,j,m,ngid;
              ^
In file included from ../../../src/mdlib/ns.c:54:
At top level:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/ns.c:51:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/mdlib/ns.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o stat.lo ../../../src/mdlib/stat.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/stat.c  -fPIC -DPIC -o .libs/stat.o
In file included from ../../../include/statutil.h:51,
                 from ../../../src/mdlib/stat.c:63:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/mdlib/stat.c:53:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/stat.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/stat.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o minimize.lo ../../../src/mdlib/minimize.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/minimize.c  -fPIC -DPIC -o .libs/minimize.o
../../../src/mdlib/minimize.c: In function 'get_f_norm_max':
../../../src/mdlib/minimize.c:153:14: warning: unused variable 'fmax2_0' [-Wunused-variable]
   real fmax2,fmax2_0,fam;
              ^~~~~~~
../../../src/mdlib/minimize.c: In function 'evaluate_energy':
../../../src/mdlib/minimize.c:573:12: warning: unused variable 'state' [-Wunused-variable]
   t_state *state;
            ^~~~~
../../../src/mdlib/minimize.c: In function 'do_cg':
../../../src/mdlib/minimize.c:813:10: warning: unused variable 'terminate' [-Wunused-variable]
   real   terminate=0;
          ^~~~~~~~~
../../../src/mdlib/minimize.c:798:26: warning: unused variable 'sum' [-Wunused-variable]
   double gpa,gpb,gpc,tmp,sum[2],minstep;
                          ^~~
../../../src/mdlib/minimize.c:797:28: warning: unused variable 'sfm' [-Wunused-variable]
   rvec   *f_global,*p,*sf,*sfm;
                            ^~~
../../../src/mdlib/minimize.c: In function 'do_lbfgs':
../../../src/mdlib/minimize.c:1329:10: warning: unused variable 'terminate' [-Wunused-variable]
   real   terminate;
          ^~~~~~~~~
../../../src/mdlib/minimize.c:1320:20: warning: variable 'first' set but not used [-Wunused-but-set-variable]
   bool   converged,first;
                    ^~~~~
../../../src/mdlib/minimize.c: In function 'do_steep':
../../../src/mdlib/minimize.c:1957:10: warning: unused variable 'terminate' [-Wunused-variable]
   real   terminate=0;
          ^~~~~~~~~
../../../src/mdlib/minimize.c:1946:16: warning: unused variable 'dvdlambda' [-Wunused-variable]
   real   ustep,dvdlambda,fnormn;
                ^~~~~~~~~
../../../src/mdlib/minimize.c:1945:19: warning: unused variable 'constepsize' [-Wunused-variable]
   real   stepsize,constepsize;
                   ^~~~~~~~~~~
../../../src/mdlib/minimize.c: In function 'do_nm':
../../../src/mdlib/minimize.c:2163:22: warning: unused variable 'fmax' [-Wunused-variable]
     real       fnorm,fmax;
                      ^~~~
../../../src/mdlib/minimize.c:2163:16: warning: unused variable 'fnorm' [-Wunused-variable]
     real       fnorm,fmax;
                ^~~~~
../../../src/mdlib/minimize.c:2151:16: warning: unused variable 'nfmax' [-Wunused-variable]
     int        nfmax,count;
                ^~~~~
../../../src/mdlib/minimize.c:2149:16: warning: unused variable 'bNS' [-Wunused-variable]
     bool       bNS;
                ^~~
../../../src/mdlib/minimize.c:2148:18: warning: variable 'lambda' set but not used [-Wunused-but-set-variable]
     real       t,lambda,t0,lam0;
                  ^~~~~~
../../../src/mdlib/minimize.c: In function 'do_tpi':
../../../src/mdlib/minimize.c:2419:18: warning: unused variable 'end' [-Wunused-variable]
   int    i,start,end;
                  ^~~
../../../src/mdlib/minimize.c:2419:12: warning: unused variable 'start' [-Wunused-variable]
   int    i,start,end;
            ^~~~~
../../../src/mdlib/minimize.c:2404:15: warning: unused variable 'TPI' [-Wunused-variable]
   const char *TPI="Test Particle Insertion";
               ^~~
At top level:
../../../src/mdlib/minimize.c:515:13: warning: 'do_x_sub' defined but not used [-Wunused-function]
 static void do_x_sub(t_commrec *cr,int n,rvec *x1,rvec *x2,real a,rvec *f)
             ^~~~~~~~
../../../src/mdlib/minimize.c:493:13: warning: 'do_x_step' defined but not used [-Wunused-function]
 static void do_x_step(t_commrec *cr,int n,rvec *x1,real a,rvec *f,rvec *x2)
             ^~~~~~~~~
In file included from ../../../include/pme.h:46,
                 from ../../../src/mdlib/minimize.c:83:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/mdlib/minimize.c:63:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../include/pull.h:44,
                 from ../../../include/update.h:49,
                 from ../../../src/mdlib/minimize.c:59:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../include/pull.h:44,
                 from ../../../include/update.h:49,
                 from ../../../src/mdlib/minimize.c:59:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/mdlib/minimize.c:47:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o sim_util.lo ../../../src/mdlib/sim_util.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/sim_util.c  -fPIC -DPIC -o .libs/sim_util.o
../../../src/mdlib/sim_util.c: In function 'calc_virial':
../../../src/mdlib/sim_util.c:250:10: warning: unused variable 'virtest' [-Wunused-variable]
   tensor virtest;
          ^~~~~~~
../../../src/mdlib/sim_util.c:249:9: warning: unused variable 'j' [-Wunused-variable]
   int i,j;
         ^
../../../src/mdlib/sim_util.c: In function 'do_force':
../../../src/mdlib/sim_util.c:348:15: warning: unused variable 'box_size' [-Wunused-variable]
   static rvec box_size;
               ^~~~~~~~
../../../src/mdlib/sim_util.c: In function 'calc_enervirdiff':
../../../src/mdlib/sim_util.c:823:13: warning: variable 'r1' set but not used [-Wunused-but-set-variable]
   double r0,r1,r,rc3,rc9,ea,eb,ec,pa,pb,pc,pd;
             ^~
../../../src/mdlib/sim_util.c: In function 'finish_run':
../../../src/mdlib/sim_util.c:1134:14: warning: unused variable 'status' [-Wunused-variable]
   MPI_Status status;
              ^~~~~~
../../../src/mdlib/sim_util.c:1133:10: warning: unused variable 'nrnb_buf' [-Wunused-variable]
   double nrnb_buf[4];
          ^~~~~~~~
../../../src/mdlib/sim_util.c:1132:10: warning: unused variable 'sender' [-Wunused-variable]
   int    sender;
          ^~~~~~
../../../src/mdlib/sim_util.c: In function 'init_md':
../../../src/mdlib/sim_util.c:1222:13: warning: unused variable 'mod' [-Wunused-variable]
   real tmpt,mod;
             ^~~
../../../src/mdlib/sim_util.c:1222:8: warning: unused variable 'tmpt' [-Wunused-variable]
   real tmpt,mod;
        ^~~~
../../../src/mdlib/sim_util.c:1221:12: warning: unused variable 'n' [-Wunused-variable]
   int  i,j,n;
            ^
../../../src/mdlib/sim_util.c:1221:10: warning: unused variable 'j' [-Wunused-variable]
   int  i,j,n;
          ^
At top level:
../../../src/mdlib/sim_util.c:348:15: warning: 'box_size' defined but not used [-Wunused-variable]
   static rvec box_size;
               ^~~~~~~~
In file included from ../../../src/mdlib/sim_util.c:78:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/pme.h:46,
                 from ../../../src/mdlib/sim_util.c:68:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/mdlib/sim_util.c:57:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/sim_util.c:57:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o tgroup.lo ../../../src/mdlib/tgroup.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/tgroup.c  -fPIC -DPIC -o .libs/tgroup.o
../../../src/mdlib/tgroup.c: In function 'init_grptcstat':
../../../src/mdlib/tgroup.c:57:9: warning: unused variable 'j' [-Wunused-variable]
   int i,j;
         ^
At top level:
../../../src/mdlib/tgroup.c:141:13: warning: 'accumulate_ekin' defined but not used [-Wunused-function]
 static void accumulate_ekin(t_commrec *cr,t_grpopts *opts,
             ^~~~~~~~~~~~~~~
In file included from ../../../include/update.h:48,
                 from ../../../src/mdlib/tgroup.c:51:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/tgroup.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/tgroup.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o update.lo ../../../src/mdlib/update.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/update.c  -fPIC -DPIC -o .libs/update.o
../../../src/mdlib/update.c: In function 'update':
../../../src/mdlib/update.c:771:39: warning: unused variable 'g' [-Wunused-variable]
   int              start,homenr,i,n,m,g;
                                       ^
../../../src/mdlib/update.c:770:20: warning: variable 'dt_1' set but not used [-Wunused-but-set-variable]
   real             dt_1;
                    ^~~~
In file included from ../../../src/mdlib/update.c:62:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/update.h:48,
                 from ../../../src/mdlib/update.c:53:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/update.c:50:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/update.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o domdec.lo ../../../src/mdlib/domdec.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/domdec.c  -fPIC -DPIC -o .libs/domdec.o
../../../src/mdlib/domdec.c: In function 'dd_move_cellx':
../../../src/mdlib/domdec.c:785:41: warning: unused variable 'k' [-Wunused-variable]
     int  d,d1,dim,dim1,pos,buf_size,i,j,k,p,npulse;
                                         ^
../../../src/mdlib/domdec.c:785:19: warning: unused variable 'dim1' [-Wunused-variable]
     int  d,d1,dim,dim1,pos,buf_size,i,j,k,p,npulse;
                   ^~~~
../../../src/mdlib/domdec.c: In function 'dd_collect_vec':
../../../src/mdlib/domdec.c:1212:11: warning: unused variable 'buf' [-Wunused-variable]
     rvec *buf=NULL;
           ^~~
../../../src/mdlib/domdec.c:1211:18: warning: unused variable 'nalloc' [-Wunused-variable]
     int  n,i,c,a,nalloc=0;
                  ^~~~~~
../../../src/mdlib/domdec.c:1211:16: warning: unused variable 'a' [-Wunused-variable]
     int  n,i,c,a,nalloc=0;
                ^
../../../src/mdlib/domdec.c:1211:14: warning: unused variable 'c' [-Wunused-variable]
     int  n,i,c,a,nalloc=0;
              ^
../../../src/mdlib/domdec.c:1211:12: warning: unused variable 'i' [-Wunused-variable]
     int  n,i,c,a,nalloc=0;
            ^
../../../src/mdlib/domdec.c:1211:10: warning: unused variable 'n' [-Wunused-variable]
     int  n,i,c,a,nalloc=0;
          ^
../../../src/mdlib/domdec.c:1210:26: warning: unused variable 'ma' [-Wunused-variable]
     gmx_domdec_master_t *ma;
                          ^~
../../../src/mdlib/domdec.c: In function 'dd_distribute_vec_scatterv':
../../../src/mdlib/domdec.c:1427:18: warning: unused variable 'nalloc' [-Wunused-variable]
     int  n,i,c,a,nalloc=0;
                  ^~~~~~
../../../src/mdlib/domdec.c: In function 'gmx_ddcoord2pmeindex':
../../../src/mdlib/domdec.c:1805:28: warning: unused variable 'nc' [-Wunused-variable]
     ivec coords,coords_pme,nc;
                            ^~
../../../src/mdlib/domdec.c:1805:17: warning: unused variable 'coords_pme' [-Wunused-variable]
     ivec coords,coords_pme,nc;
                 ^~~~~~~~~~
../../../src/mdlib/domdec.c: In function 'make_dd_indices':
../../../src/mdlib/domdec.c:2107:11: warning: variable 'bLocalCG' set but not used [-Wunused-but-set-variable]
     char *bLocalCG;
           ^~~~~~~~
../../../src/mdlib/domdec.c: In function 'check_bLocalCG':
../../../src/mdlib/domdec.c:2162:9: warning: unused variable 'ncg' [-Wunused-variable]
     int ncg,i,ngl,nerr;
         ^~~
../../../src/mdlib/domdec.c: In function 'dd_redistribute_cg':
../../../src/mdlib/domdec.c:3706:49: warning: unused variable 'cell_d' [-Wunused-variable]
     int  c,i,cg,k,k0,k1,d,dim,dim2,dir,d2,d3,d4,cell_d;
                                                 ^~~~~~
../../../src/mdlib/domdec.c:3706:46: warning: unused variable 'd4' [-Wunused-variable]
     int  c,i,cg,k,k0,k1,d,dim,dim2,dir,d2,d3,d4,cell_d;
                                              ^~
../../../src/mdlib/domdec.c: In function 'get_load_distribution':
../../../src/mdlib/domdec.c:4326:16: warning: unused variable 'cid' [-Wunused-variable]
     int  d,dim,cid,i,pos;
                ^~~
../../../src/mdlib/domdec.c: In function 'setup_dd_grid':
../../../src/mdlib/domdec.c:4781:10: warning: unused variable 'bZYX' [-Wunused-variable]
     bool bZYX;
          ^~~~
../../../src/mdlib/domdec.c: In function 'check_dlb_support':
../../../src/mdlib/domdec.c:5598:9: warning: label 'edlbYES' defined but not used [-Wunused-label]
         edlbYES:
         ^~~~~~~
../../../src/mdlib/domdec.c:5594:9: warning: label 'edlbAUTO' defined but not used [-Wunused-label]
         edlbAUTO:
         ^~~~~~~~
../../../src/mdlib/domdec.c:5592:9: warning: label 'edlbNO' defined but not used [-Wunused-label]
         edlbNO:
         ^~~~~~
../../../src/mdlib/domdec.c:5553:19: warning: unused variable 'dd' [-Wunused-variable]
     gmx_domdec_t *dd;
                   ^~
../../../src/mdlib/domdec.c: In function 'init_domain_decomposition':
../../../src/mdlib/domdec.c:5652:14: warning: unused variable 'j' [-Wunused-variable]
     int  d,i,j;
              ^
../../../src/mdlib/domdec.c:5652:12: warning: unused variable 'i' [-Wunused-variable]
     int  d,i,j;
            ^
../../../src/mdlib/domdec.c:5652:10: warning: unused variable 'd' [-Wunused-variable]
     int  d,i,j;
          ^
../../../src/mdlib/domdec.c: In function 'turn_on_dlb':
../../../src/mdlib/domdec.c:6010:10: warning: unused variable 'buf' [-Wunused-variable]
     char buf[STRLEN];
          ^~~
../../../src/mdlib/domdec.c: In function 'dd_init_bondeds':
../../../src/mdlib/domdec.c:6086:10: warning: unused variable 'd' [-Wunused-variable]
     int  d;
          ^
../../../src/mdlib/domdec.c:6085:10: warning: unused variable 'bBondComm' [-Wunused-variable]
     bool bBondComm;
          ^~~~~~~~~
../../../src/mdlib/domdec.c: In function 'setup_dd_communication':
../../../src/mdlib/domdec.c:6486:64: warning: unused variable 'inv_ncg' [-Wunused-variable]
     real r_mb,r_comm2,r_scomm2,r_bcomm2,r,r_0,r_1,r2,rb2,r2inc,inv_ncg,tric_sh;
                                                                ^~~~~~~
../../../src/mdlib/domdec.c:6486:58: warning: unused variable 'r2inc' [-Wunused-variable]
     real r_mb,r_comm2,r_scomm2,r_bcomm2,r,r_0,r_1,r2,rb2,r2inc,inv_ncg,tric_sh;
                                                          ^~~~~
../../../src/mdlib/domdec.c:6486:47: warning: unused variable 'r_1' [-Wunused-variable]
     real r_mb,r_comm2,r_scomm2,r_bcomm2,r,r_0,r_1,r2,rb2,r2inc,inv_ncg,tric_sh;
                                               ^~~
../../../src/mdlib/domdec.c:6486:43: warning: unused variable 'r_0' [-Wunused-variable]
     real r_mb,r_comm2,r_scomm2,r_bcomm2,r,r_0,r_1,r2,rb2,r2inc,inv_ncg,tric_sh;
                                           ^~~
../../../src/mdlib/domdec.c:6486:23: warning: unused variable 'r_scomm2' [-Wunused-variable]
     real r_mb,r_comm2,r_scomm2,r_bcomm2,r,r_0,r_1,r2,rb2,r2inc,inv_ncg,tric_sh;
                       ^~~~~~~~
../../../src/mdlib/domdec.c:6486:10: warning: unused variable 'r_mb' [-Wunused-variable]
     real r_mb,r_comm2,r_scomm2,r_bcomm2,r,r_0,r_1,r2,rb2,r2inc,inv_ncg,tric_sh;
          ^~~~
../../../src/mdlib/domdec.c: In function 'dd_partition_system':
../../../src/mdlib/domdec.c:7481:12: warning: unused variable 'j' [-Wunused-variable]
     int  i,j,n,cg0=0,ncg_home_old=-1;
            ^
In file included from ../../../include/mdrun.h:50,
                 from ../../../src/mdlib/domdec.c:44:
At top level:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../include/pme.h:46,
                 from ../../../src/mdlib/domdec.c:41:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/mdlib/domdec.c:31:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/domdec.c:31:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o vcm.lo ../../../src/mdlib/vcm.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/vcm.c  -fPIC -DPIC -o .libs/vcm.o
../../../src/mdlib/vcm.c: In function 'calc_vcm_grp':
../../../src/mdlib/vcm.c:122:28: warning: unused variable 'zz' [-Wunused-variable]
   real   m0,xx,xy,xz,yy,yz,zz;
                            ^~
../../../src/mdlib/vcm.c:122:25: warning: unused variable 'yz' [-Wunused-variable]
   real   m0,xx,xy,xz,yy,yz,zz;
                         ^~
../../../src/mdlib/vcm.c:122:22: warning: unused variable 'yy' [-Wunused-variable]
   real   m0,xx,xy,xz,yy,yz,zz;
                      ^~
../../../src/mdlib/vcm.c:122:19: warning: unused variable 'xz' [-Wunused-variable]
   real   m0,xx,xy,xz,yy,yz,zz;
                   ^~
../../../src/mdlib/vcm.c:122:16: warning: unused variable 'xy' [-Wunused-variable]
   real   m0,xx,xy,xz,yy,yz,zz;
                ^~
../../../src/mdlib/vcm.c:122:13: warning: unused variable 'xx' [-Wunused-variable]
   real   m0,xx,xy,xz,yy,yz,zz;
             ^~
../../../src/mdlib/vcm.c: In function 'do_stopcm_grp':
../../../src/mdlib/vcm.c:171:11: warning: unused variable 'tm_1' [-Wunused-variable]
   real tm,tm_1;
           ^~~~
../../../src/mdlib/vcm.c:171:8: warning: unused variable 'tm' [-Wunused-variable]
   real tm,tm_1;
        ^~
../../../src/mdlib/vcm.c:170:12: warning: unused variable 'm' [-Wunused-variable]
   int  i,g,m;
            ^
../../../src/mdlib/vcm.c: In function 'check_cm_grp':
../../../src/mdlib/vcm.c:250:14: warning: unused variable 'Tcm' [-Wunused-variable]
   tensor Icm,Tcm;
              ^~~
In file included from ../../../src/mdlib/vcm.c:43:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/vcm.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o wnblist.lo ../../../src/mdlib/wnblist.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/wnblist.c  -fPIC -DPIC -o .libs/wnblist.o
../../../src/mdlib/wnblist.c: In function 'read_nblist':
../../../src/mdlib/wnblist.c:135:27: warning: unused variable 'icmp' [-Wunused-variable]
     int  i,ii,j,nnbl,full,icmp,nri,isolv;
                           ^~~~
../../../src/mdlib/wnblist.c:135:22: warning: unused variable 'full' [-Wunused-variable]
     int  i,ii,j,nnbl,full,icmp,nri,isolv;
                      ^~~~
../../../src/mdlib/wnblist.c:135:17: warning: unused variable 'nnbl' [-Wunused-variable]
     int  i,ii,j,nnbl,full,icmp,nri,isolv;
                 ^~~~
../../../src/mdlib/wnblist.c:134:26: warning: unused variable 'b2' [-Wunused-variable]
     char buf[256],b1[32],b2[32],solv[256],il_code[256];
                          ^~
../../../src/mdlib/wnblist.c:134:19: warning: unused variable 'b1' [-Wunused-variable]
     char buf[256],b1[32],b2[32],solv[256],il_code[256];
                   ^~
../../../src/mdlib/wnblist.c:133:10: warning: unused variable 'bNL' [-Wunused-variable]
     bool bNL;
          ^~~
In file included from ../../../src/mdlib/wnblist.c:44:
At top level:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o shellfc.lo ../../../src/mdlib/shellfc.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/shellfc.c  -fPIC -DPIC -o .libs/shellfc.o
../../../src/mdlib/shellfc.c: In function 'predict_shells':
../../../src/mdlib/shellfc.c:115:18: warning: unused variable 'dt_3' [-Wunused-variable]
   real dt_1,dt_2,dt_3,fudge,tm,m1,m2,m3;
                  ^~~~
../../../src/mdlib/shellfc.c:115:13: warning: unused variable 'dt_2' [-Wunused-variable]
   real dt_1,dt_2,dt_3,fudge,tm,m1,m2,m3;
             ^~~~
../../../src/mdlib/shellfc.c: In function 'init_shell_flexcon':
../../../src/mdlib/shellfc.c:197:32: warning: unused variable 'mt' [-Wunused-variable]
   int         i,j,nmol,type,mb,mt,a_offset,cg,mol,ftype,nra;
                                ^~
../../../src/mdlib/shellfc.c:197:19: warning: unused variable 'nmol' [-Wunused-variable]
   int         i,j,nmol,type,mb,mt,a_offset,cg,mol,ftype,nra;
                   ^~~~
../../../src/mdlib/shellfc.c: In function 'init_adir':
../../../src/mdlib/shellfc.c:694:12: warning: unused variable 'dx' [-Wunused-variable]
   rvec   p,dx;
            ^~
../../../src/mdlib/shellfc.c:694:10: warning: unused variable 'p' [-Wunused-variable]
   rvec   p,dx;
          ^
../../../src/mdlib/shellfc.c:691:13: warning: unused variable 'scale' [-Wunused-variable]
   real   dt,scale;
             ^~~~~
../../../src/mdlib/shellfc.c:690:16: warning: unused variable 'gt' [-Wunused-variable]
   int    gf,ga,gt;
                ^~
../../../src/mdlib/shellfc.c:690:13: warning: unused variable 'ga' [-Wunused-variable]
   int    gf,ga,gt;
             ^~
../../../src/mdlib/shellfc.c:690:10: warning: unused variable 'gf' [-Wunused-variable]
   int    gf,ga,gt;
          ^~
../../../src/mdlib/shellfc.c: In function 'relax_shell_flexcon':
../../../src/mdlib/shellfc.c:776:19: warning: unused variable 'g' [-Wunused-variable]
   int    nflexcon,g,number_steps,d,Min=0,count=0;
                   ^
../../../src/mdlib/shellfc.c:772:10: warning: unused variable 'cbuf' [-Wunused-variable]
   char   cbuf[56];
          ^~~~
../../../src/mdlib/shellfc.c:771:19: warning: unused variable 'xiS' [-Wunused-variable]
   real   ftol,xiH,xiS,dum=0;
                   ^~~
../../../src/mdlib/shellfc.c:771:15: warning: unused variable 'xiH' [-Wunused-variable]
   real   ftol,xiH,xiS,dum=0;
               ^~~
../../../src/mdlib/shellfc.c:769:10: warning: unused variable 'dx' [-Wunused-variable]
   rvec   dx;
          ^~
In file included from ../../../src/mdlib/shellfc.c:55:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/mdrun.h:50,
                 from ../../../src/mdlib/shellfc.c:45:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/shellfc.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/shellfc.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o wall.lo ../../../src/mdlib/wall.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/wall.c  -fPIC -DPIC -o .libs/wall.o
../../../src/mdlib/wall.c: In function 'do_walls':
../../../src/mdlib/wall.c:107:47: warning: unused variable 'Heps' [-Wunused-variable]
   real tabscale,*VFtab,rt,eps,eps2,Yt,Ft,Geps,Heps,Heps2,Fp,VV,FF;
                                               ^~~~
../../../src/mdlib/wall.c:103:50: warning: variable 'Fwall' set but not used [-Wunused-but-set-variable]
   real *nbfp,lamfac,fac_d[2],fac_r[2],Cd,Cr,Vtot,Fwall[2];
                                                  ^~~~~
In file included from ../../../src/mdlib/wall.c:48:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/wall.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/mdlib/wall.c:45:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o tables.lo ../../../src/mdlib/tables.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/tables.c  -fPIC -DPIC -o .libs/tables.o
../../../src/mdlib/tables.c: In function 'done_tabledata':
../../../src/mdlib/tables.c:470:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/mdlib/tables.c: In function 'make_tables':
../../../src/mdlib/tables.c:835:17: warning: unused variable 'j' [-Wunused-variable]
   int         i,j,k,nx,nx0,tabsel[etiNR];
                 ^
../../../src/mdlib/tables.c: In function 'make_bonded_table':
../../../src/mdlib/tables.c:950:10: warning: variable 'start' set but not used [-Wunused-but-set-variable]
   double start;
          ^~~~~
At top level:
../../../src/mdlib/tables.c:155:13: warning: 'splint' defined but not used [-Wunused-function]
 static void splint(real xa[],real ya[],real y2a[],
             ^~~~~~
In file included from ../../../src/mdlib/tables.c:51:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/tables.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/tables.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_fft.lo ../../../src/mdlib/gmx_fft.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/gmx_fft.c  -fPIC -DPIC -o .libs/gmx_fft.o
In file included from ../../../src/mdlib/gmx_fft.c:30:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_parallel_3dfft.lo ../../../src/mdlib/gmx_parallel_3dfft.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/gmx_parallel_3dfft.c  -fPIC -DPIC -o .libs/gmx_parallel_3dfft.o
../../../src/mdlib/gmx_parallel_3dfft.c: In function 'gmx_parallel_3dfft':
../../../src/mdlib/gmx_parallel_3dfft.c:283:22: warning: unused variable 'k' [-Wunused-variable]
     int          i,j,k;
                      ^
../../../src/mdlib/gmx_parallel_3dfft.c: In function 'gmx_parallel_3dfft_complex2real':
../../../src/mdlib/gmx_parallel_3dfft.c:484:18: warning: variable 'cdata' set but not used [-Wunused-but-set-variable]
     t_complex *  cdata;
                  ^~~~~
../../../src/mdlib/gmx_parallel_3dfft.c:483:18: warning: variable 'work' set but not used [-Wunused-but-set-variable]
     t_complex *  work;
                  ^~~~
../../../src/mdlib/gmx_parallel_3dfft.c:480:24: warning: variable 'nzc' set but not used [-Wunused-but-set-variable]
     int          nx,ny,nzc;
                        ^~~
../../../src/mdlib/gmx_parallel_3dfft.c:480:21: warning: variable 'ny' set but not used [-Wunused-but-set-variable]
     int          nx,ny,nzc;
                     ^~
../../../src/mdlib/gmx_parallel_3dfft.c:480:18: warning: variable 'nx' set but not used [-Wunused-but-set-variable]
     int          nx,ny,nzc;
                  ^~
../../../src/mdlib/gmx_parallel_3dfft.c:479:22: warning: unused variable 'k' [-Wunused-variable]
     int          i,j,k;
                      ^
../../../src/mdlib/gmx_parallel_3dfft.c:479:20: warning: unused variable 'j' [-Wunused-variable]
     int          i,j,k;
                    ^
../../../src/mdlib/gmx_parallel_3dfft.c:479:18: warning: unused variable 'i' [-Wunused-variable]
     int          i,j,k;
                  ^
In file included from ../../../include/gmx_parallel_3dfft.h:30,
                 from ../../../src/mdlib/gmx_parallel_3dfft.c:32:
At top level:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o csettle.lo ../../../src/mdlib/csettle.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/csettle.c  -fPIC -DPIC -o .libs/csettle.o
../../../src/mdlib/csettle.c: In function 'xshake':
../../../src/mdlib/csettle.c:183:39: warning: unused variable 'conv' [-Wunused-variable]
   int i,ll,ii,jj,l3,ix,iy,iz,jx,jy,jz,conv;
                                       ^~~~
../../../src/mdlib/csettle.c: In function 'csettle':
../../../src/mdlib/csettle.c:298:10: warning: unused variable 'shakeret' [-Wunused-variable]
   int i, shakeret, ow1, hw2, hw3;
          ^~~~~~~~
In file included from ../../../src/mdlib/csettle.c:42:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/csettle.c:42:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_wallcycle.lo ../../../src/mdlib/gmx_wallcycle.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/gmx_wallcycle.c  -fPIC -DPIC -o .libs/gmx_wallcycle.o
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o qm_gaussian.lo ../../../src/mdlib/qm_gaussian.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/qm_gaussian.c  -fPIC -DPIC -o .libs/qm_gaussian.o
../../../src/mdlib/qm_gaussian.c: In function 'init_gaussian':
../../../src/mdlib/qm_gaussian.c:73:6: warning: unused variable 'rffile' [-Wunused-variable]
     *rffile=NULL,*out=NULL;
      ^~~~~~
In file included from ../../../src/mdlib/qm_gaussian.c:60:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/qm_gaussian.c:49:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/qm_gaussian.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/qm_gaussian.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_fft_fftw3.lo ../../../src/mdlib/gmx_fft_fftw3.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/gmx_fft_fftw3.c  -fPIC -DPIC -o .libs/gmx_fft_fftw3.o
In file included from ../../../include/gmx_fft.h:41,
                 from ../../../src/mdlib/gmx_fft_fftw3.c:27:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o vsite.lo ../../../src/mdlib/vsite.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/vsite.c  -fPIC -DPIC -o .libs/vsite.o
../../../src/mdlib/vsite.c: In function 'constr_vsiten':
../../../src/mdlib/vsite.c:437:8: warning: unused variable 'xs' [-Wunused-variable]
   rvec xs,x1,dx;
        ^~
../../../src/mdlib/vsite.c: In function 'construct_vsites':
../../../src/mdlib/vsite.c:484:25: warning: unused variable 'rtmp' [-Wunused-variable]
   rvec      reftmp,vtmp,rtmp;
                         ^~~~
../../../src/mdlib/vsite.c:484:20: warning: unused variable 'vtmp' [-Wunused-variable]
   rvec      reftmp,vtmp,rtmp;
                    ^~~~
../../../src/mdlib/vsite.c:484:13: warning: unused variable 'reftmp' [-Wunused-variable]
   rvec      reftmp,vtmp,rtmp;
             ^~~~~~
../../../src/mdlib/vsite.c:478:19: warning: unused variable 'ii' [-Wunused-variable]
   int       i,inc,ii,nra,nr,tp,ftype;
                   ^~
../../../src/mdlib/vsite.c: In function 'spread_vsite2':
../../../src/mdlib/vsite.c:655:11: warning: unused variable 'b' [-Wunused-variable]
   real    b;
           ^
../../../src/mdlib/vsite.c: In function 'spread_vsite3FD':
../../../src/mdlib/vsite.c:770:23: warning: unused variable 'd' [-Wunused-variable]
   int     svi,sji,skj,d;
                       ^
../../../src/mdlib/vsite.c:767:14: warning: unused variable 'fz' [-Wunused-variable]
   real fx,fy,fz,c,invl,fproj,a1;
              ^~
../../../src/mdlib/vsite.c:767:11: warning: unused variable 'fy' [-Wunused-variable]
   real fx,fy,fz,c,invl,fproj,a1;
           ^~
../../../src/mdlib/vsite.c:767:8: warning: unused variable 'fx' [-Wunused-variable]
   real fx,fy,fz,c,invl,fproj,a1;
        ^~
../../../src/mdlib/vsite.c: In function 'spread_vsite_f':
../../../src/mdlib/vsite.c:1255:19: warning: unused variable 'm' [-Wunused-variable]
   int       i,inc,m,nra,nr,tp,ftype;
                   ^
../../../src/mdlib/vsite.c: In function 'count_intercg_vsite':
../../../src/mdlib/vsite.c:1409:11: warning: unused variable 'mt' [-Wunused-variable]
   int  mb,mt,ftype,nral,i,cg,a;
           ^~
../../../src/mdlib/vsite.c: In function 'get_vsite_pbc':
../../../src/mdlib/vsite.c:1448:38: warning: unused variable 'cg_c' [-Wunused-variable]
   int  ftype,nral,i,j,vsi,vsite,cg_v,cg_c,a,nc3=0;
                                      ^~~~
../../../src/mdlib/vsite.c: In function 'init_vsite':
../../../src/mdlib/vsite.c:1559:13: warning: unused variable 'cg' [-Wunused-variable]
   int *a2cg,cg;
             ^~
In file included from ../../../src/mdlib/vsite.c:46:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/vsite.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o qmmm.lo ../../../src/mdlib/qmmm.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/qmmm.c  -fPIC -DPIC -o .libs/qmmm.o
../../../src/mdlib/qmmm.c: In function 'update_QMMMrec':
../../../src/mdlib/qmmm.c:725:6: warning: unused variable 'MMatoms' [-Wunused-variable]
     *MMatoms;
      ^~~~~~~
../../../src/mdlib/qmmm.c:721:17: warning: variable 'QMMMlist_lr' set but not used [-Wunused-but-set-variable]
     QMMMlist_sr,QMMMlist_lr;
                 ^~~~~~~~~~~
At top level:
../../../src/mdlib/qmmm.c:131:12: warning: 'int_comp' defined but not used [-Wunused-function]
 static int int_comp(const void *a,const void *b){
            ^~~~~~~~
In file included from ../../../src/mdlib/qmmm.c:60:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/qmmm.c:49:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/qmmm.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/qmmm.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o clincs.lo ../../../src/mdlib/clincs.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/clincs.c  -fPIC -DPIC -o .libs/clincs.o
../../../src/mdlib/clincs.c: In function 'do_lincsp':
../../../src/mdlib/clincs.c:189:54: warning: unused variable 'lam' [-Wunused-variable]
     real    tmp0,tmp1,tmp2,im1,im2,mvb,rlen,len,wfac,lam;
                                                      ^~~
../../../src/mdlib/clincs.c:189:49: warning: unused variable 'wfac' [-Wunused-variable]
     real    tmp0,tmp1,tmp2,im1,im2,mvb,rlen,len,wfac,lam;
                                                 ^~~~
../../../src/mdlib/clincs.c:189:45: warning: unused variable 'len' [-Wunused-variable]
     real    tmp0,tmp1,tmp2,im1,im2,mvb,rlen,len,wfac,lam;
                                             ^~~
../../../src/mdlib/clincs.c:189:40: warning: unused variable 'rlen' [-Wunused-variable]
     real    tmp0,tmp1,tmp2,im1,im2,mvb,rlen,len,wfac,lam;
                                        ^~~~
../../../src/mdlib/clincs.c: In function 'set_lincs':
../../../src/mdlib/clincs.c:764:14: warning: variable 'bLocal' set but not used [-Wunused-but-set-variable]
     bool     bLocal;
              ^~~~~~
../../../src/mdlib/clincs.c: In function 'constrain_lincs':
../../../src/mdlib/clincs.c:1084:25: warning: unused variable 'error' [-Wunused-variable]
     int   i,warn,p_imax,error;
                         ^~~~~
At top level:
../../../src/mdlib/clincs.c:1034:13: warning: 'dump_conf' defined but not used [-Wunused-function]
 static void dump_conf(gmx_domdec_t *dd,struct gmx_lincsdata *li,
             ^~~~~~~~~
In file included from ../../../include/mdrun.h:50,
                 from ../../../src/mdlib/clincs.c:50:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/clincs.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/clincs.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/mdlib/clincs.c:45:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -version-info 5:0:0 -lgslcblas  -o libmd_mpi_d.la -rpath /usr/lib calcmu.lo calcvir.lo constr.lo coupling.lo domdec.lo domdec_con.lo domdec_network.lo domdec_setup.lo domdec_top.lo ebin.lo edsam.lo ewald.lo fftgrid.lo force.lo ghat.lo init.lo mdatom.lo mdebin.lo minimize.lo mvxvf.lo ns.lo nsgrid.lo perf_est.lo pme.lo pme_pp.lo pppm.lo partdec.lo pull.lo pullutil.lo rf_util.lo shakef.lo sim_util.lo shellfc.lo stat.lo tables.lo tgroup.lo update.lo vcm.lo vsite.lo wall.lo wnblist.lo csettle.lo clincs.lo qmmm.lo gmx_fft.lo gmx_parallel_3dfft.lo gmx_wallcycle.lo qm_gaussian.lo gmx_fft_fftw3.lo ../gmxlib/libgmx_mpi_d.la	 -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
mpicc -shared  .libs/calcmu.o .libs/calcvir.o .libs/constr.o .libs/coupling.o .libs/domdec.o .libs/domdec_con.o .libs/domdec_network.o .libs/domdec_setup.o .libs/domdec_top.o .libs/ebin.o .libs/edsam.o .libs/ewald.o .libs/fftgrid.o .libs/force.o .libs/ghat.o .libs/init.o .libs/mdatom.o .libs/mdebin.o .libs/minimize.o .libs/mvxvf.o .libs/ns.o .libs/nsgrid.o .libs/perf_est.o .libs/pme.o .libs/pme_pp.o .libs/pppm.o .libs/partdec.o .libs/pull.o .libs/pullutil.o .libs/rf_util.o .libs/shakef.o .libs/sim_util.o .libs/shellfc.o .libs/stat.o .libs/tables.o .libs/tgroup.o .libs/update.o .libs/vcm.o .libs/vsite.o .libs/wall.o .libs/wnblist.o .libs/csettle.o .libs/clincs.o .libs/qmmm.o .libs/gmx_fft.o .libs/gmx_parallel_3dfft.o .libs/gmx_wallcycle.o .libs/qm_gaussian.o .libs/gmx_fft_fftw3.o  -lgslcblas ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath  -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wl,-soname -Wl,libmd_mpi_d.so.5 -o .libs/libmd_mpi_d.so.5.0.0
(cd .libs && rm -f libmd_mpi_d.so.5 && ln -s libmd_mpi_d.so.5.0.0 libmd_mpi_d.so.5)
(cd .libs && rm -f libmd_mpi_d.so && ln -s libmd_mpi_d.so.5.0.0 libmd_mpi_d.so)
creating libmd_mpi_d.la
(cd .libs && rm -f libmd_mpi_d.la && ln -s ../libmd_mpi_d.la libmd_mpi_d.la)
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
Making all in kernel
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o compute_io.lo ../../../src/kernel/compute_io.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/compute_io.c  -fPIC -DPIC -o .libs/compute_io.o
../../../src/kernel/compute_io.c: In function 'compute_io':
../../../src/kernel/compute_io.c:49:53: warning: unused variable 'nfep' [-Wunused-variable]
   int nstx=0,nstv=0,nstf=0,nste=0,nstlog=0,nstxtc=0,nfep=0;
                                                     ^~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmxcpp.lo ../../../src/kernel/gmxcpp.c
mkdir .libs
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/gmxcpp.c  -fPIC -DPIC -o .libs/gmxcpp.o
../../../src/kernel/gmxcpp.c: In function 'cpp_close_file':
../../../src/kernel/gmxcpp.c:453:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o grompp.o ../../../src/kernel/grompp.c
../../../src/kernel/grompp.c: In function 'new_status':
../../../src/kernel/grompp.c:300:3: warning: statement with no effect [-Wunused-value]
   mbs;
   ^~~
../../../src/kernel/grompp.c: In function 'read_posres':
../../../src/kernel/grompp.c:478:10: warning: unused variable 'bFirst' [-Wunused-variable]
   bool   bFirst = TRUE;
          ^~~~~~
../../../src/kernel/grompp.c: In function 'gen_posres':
../../../src/kernel/grompp.c:604:9: warning: unused variable 'j' [-Wunused-variable]
   int i,j;
         ^
../../../src/kernel/grompp.c:604:7: warning: unused variable 'i' [-Wunused-variable]
   int i,j;
       ^
../../../src/kernel/grompp.c: In function 'main':
../../../src/kernel/grompp.c:769:16: warning: unused variable 'natoms' [-Wunused-variable]
   int          natoms,nvsite,comb,mt;
                ^~~~~~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/pdb2top.h:43,
                 from ../../../src/kernel/add_par.h:41,
                 from ../../../src/kernel/grompp.c:74:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/kernel/grompp.c:60:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/grompp.c:60:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/grompp.c:54:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/kernel/grompp.c:50:
../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable]
 static const char *couple_lam[ecouplamNR+1]    = {
                    ^~~~~~~~~~
../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable]
 static const char *constraints[eshNR+1]    = {
                    ^~~~~~~~~~~
In file included from ../../../src/kernel/readir.h:43,
                 from ../../../src/kernel/grompp.c:50:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/readir.h:42,
                 from ../../../src/kernel/grompp.c:50:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
../../../src/kernel/grompp.c: In function 'main':
../../../src/kernel/grompp.c:380:19: warning: '%s' directive writing up to 4095 bytes into a region of size between 4045 and 4055 [-Wformat-overflow=]
       sprintf(buf,"%d non-matching atom name%s\n"
                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/kernel/grompp.c:856:14:
   new_status(fn,opt2fn_null("-pp",NFILE,fnm),opt2fn("-c",NFILE,fnm),
              ~~    
../../../src/kernel/grompp.c:381:25: note: format string is defined here
        "atom names from %s will be used\n"
                         ^~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/kernel/grompp.c:46:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 89 or more bytes (assuming 4194) into a destination of size 4096
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o genhydro.lo ../../../src/kernel/genhydro.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/genhydro.c  -fPIC -DPIC -o .libs/genhydro.o
In file included from ../../../src/kernel/hackblock.h:42,
                 from ../../../src/kernel/genhydro.h:41,
                 from ../../../src/kernel/genhydro.c:56:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/genhydro.h:40,
                 from ../../../src/kernel/genhydro.c:56:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/genhydro.c:51:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/genhydro.c:50:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/genhydro.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/genhydro.c:46:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gpp_atomtype.lo ../../../src/kernel/gpp_atomtype.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/gpp_atomtype.c  -fPIC -DPIC -o .libs/gpp_atomtype.o
In file included from ../../../src/kernel/topdirs.h:40,
                 from ../../../src/kernel/gpp_atomtype.c:45:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gpp_bond_atomtype.lo ../../../src/kernel/gpp_bond_atomtype.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/gpp_bond_atomtype.c  -fPIC -DPIC -o .libs/gpp_bond_atomtype.o
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o add_par.lo ../../../src/kernel/add_par.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/add_par.c  -fPIC -DPIC -o .libs/add_par.o
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/add_par.c:46:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/kernel/add_par.c:44:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o h_db.lo ../../../src/kernel/h_db.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/h_db.c  -fPIC -DPIC -o .libs/h_db.o
../../../src/kernel/h_db.c: In function 'dump_h_db':
../../../src/kernel/h_db.c:113:10: warning: unused variable 'j' [-Wunused-variable]
   int  i,j,k;
          ^
In file included from ../../../src/kernel/hackblock.h:42,
                 from ../../../src/kernel/h_db.h:41,
                 from ../../../src/kernel/h_db.c:47:
At top level:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/h_db.h:41,
                 from ../../../src/kernel/h_db.c:47:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o convparm.lo ../../../src/kernel/convparm.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/convparm.c  -fPIC -DPIC -o .libs/convparm.o
../../../src/kernel/convparm.c: In function 'new_interaction_list':
../../../src/kernel/convparm.c:404:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/kernel/convparm.c: In function 'convert_params':
../../../src/kernel/convparm.c:414:12: warning: unused variable 'j' [-Wunused-variable]
   int    i,j,maxtypes,mt;
            ^
At top level:
../../../src/kernel/convparm.c:402:13: warning: 'new_interaction_list' defined but not used [-Wunused-function]
 static void new_interaction_list(t_ilist *ilist)
             ^~~~~~~~~~~~~~~~~~~~
In file included from ../../../src/kernel/topio.h:41,
                 from ../../../src/kernel/convparm.c:48:
../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable]
 static const char *couple_lam[ecouplamNR+1]    = {
                    ^~~~~~~~~~
../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable]
 static const char *constraints[eshNR+1]    = {
                    ^~~~~~~~~~~
In file included from ../../../src/kernel/readir.h:43,
                 from ../../../src/kernel/topio.h:41,
                 from ../../../src/kernel/convparm.c:48:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/readir.h:42,
                 from ../../../src/kernel/topio.h:41,
                 from ../../../src/kernel/convparm.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/convparm.c:44:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/convparm.c:44:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o hizzie.lo ../../../src/kernel/hizzie.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/hizzie.c  -fPIC -DPIC -o .libs/hizzie.o
../../../src/kernel/hizzie.c: In function 'set_histp':
../../../src/kernel/hizzie.c:195:8: warning: unused variable 'd' [-Wunused-variable]
   real d;
        ^
../../../src/kernel/hizzie.c:192:27: warning: unused variable 'his0' [-Wunused-variable]
   int  i,j,nd,na,aj,hisnr,his0,type=-1;
                           ^~~~
../../../src/kernel/hizzie.c:192:18: warning: unused variable 'aj' [-Wunused-variable]
   int  i,j,nd,na,aj,hisnr,his0,type=-1;
                  ^~
../../../src/kernel/hizzie.c:188:15: warning: unused variable 'bHaveH' [-Wunused-variable]
   bool *hbond,bHaveH=FALSE;
               ^~~~~~
In file included from ../../../src/kernel/toputil.h:40,
                 from ../../../src/kernel/hizzie.c:48:
At top level:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/hizzie.c:46:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/hizzie.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/hizzie.c:44:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o pgutil.lo ../../../src/kernel/pgutil.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/pgutil.c  -fPIC -DPIC -o .libs/pgutil.o
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o readpull.lo ../../../src/kernel/readpull.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/readpull.c  -fPIC -DPIC -o .libs/readpull.o
../../../src/kernel/readpull.c: In function 'read_pullparams':
../../../src/kernel/readpull.c:102:22: warning: unused variable 'nchar' [-Wunused-variable]
   int  ninp,nerror,i,nchar,ndim,nscan,m;
                      ^~~~~
In file included from ../../../src/kernel/readpull.c:54:
At top level:
../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable]
 static const char *couple_lam[ecouplamNR+1]    = {
                    ^~~~~~~~~~
../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable]
 static const char *constraints[eshNR+1]    = {
                    ^~~~~~~~~~~
In file included from ../../../src/kernel/readir.h:43,
                 from ../../../src/kernel/readpull.c:54:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/readpull.c:46:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/readpull.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/readpull.c:45:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o hackblock.lo ../../../src/kernel/hackblock.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/hackblock.c  -fPIC -DPIC -o .libs/hackblock.o
In file included from ../../../src/kernel/hackblock.c:44:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/hackblock.c:44:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/hackblock.h:42,
                 from ../../../src/kernel/hackblock.c:42:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/hackblock.c:42:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o pdb2top.lo ../../../src/kernel/pdb2top.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/pdb2top.c  -fPIC -DPIC -o .libs/pdb2top.o
../../../src/kernel/pdb2top.c: In function 'missing_atoms':
../../../src/kernel/pdb2top.c:75:16: warning: unused variable 'bRet' [-Wunused-variable]
   bool bFound, bRet;
                ^~~~
In file included from ../../../src/kernel/topio.h:41,
                 from ../../../src/kernel/pdb2top.c:57:
At top level:
../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable]
 static const char *couple_lam[ecouplamNR+1]    = {
                    ^~~~~~~~~~
../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable]
 static const char *constraints[eshNR+1]    = {
                    ^~~~~~~~~~~
In file included from ../../../src/kernel/readir.h:42,
                 from ../../../src/kernel/topio.h:41,
                 from ../../../src/kernel/pdb2top.c:57:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/pdb2top.h:43,
                 from ../../../src/kernel/pdb2top.c:50:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/kernel/pdb2top.h:41,
                 from ../../../src/kernel/pdb2top.c:50:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/pdb2top.c:44:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/kernel/pdb2top.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/pdb2top.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gen_ad.lo ../../../src/kernel/gen_ad.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/gen_ad.c  -fPIC -DPIC -o .libs/gen_ad.o
../../../src/kernel/gen_ad.c: In function 'get_impropers':
../../../src/kernel/gen_ad.c:437:25: warning: unused variable 'r' [-Wunused-variable]
   int       nidih,i,j,k,r,start,ninc,nalloc;
                         ^
../../../src/kernel/gen_ad.c:436:15: warning: unused variable 'hbidih' [-Wunused-variable]
   t_rbonded  *hbidih;
               ^~~~~~
../../../src/kernel/gen_ad.c:434:14: warning: unused variable 'a0' [-Wunused-variable]
   char      *a0;
              ^~
../../../src/kernel/gen_ad.c: In function 'clean_excls':
../../../src/kernel/gen_ad.c:576:26: warning: unused variable 'n' [-Wunused-variable]
   int i,j,j1,k,k1,l,l1,m,n,e;
                          ^
../../../src/kernel/gen_ad.c:576:24: warning: unused variable 'm' [-Wunused-variable]
   int i,j,j1,k,k1,l,l1,m,n,e;
                        ^
../../../src/kernel/gen_ad.c: In function 'generate_excls':
../../../src/kernel/gen_ad.c:618:28: warning: unused variable 'e' [-Wunused-variable]
   int i,j,j1,k,k1,l,l1,m,n,e,N;
                            ^
../../../src/kernel/gen_ad.c:618:24: warning: unused variable 'm' [-Wunused-variable]
   int i,j,j1,k,k1,l,l1,m,n,e,N;
                        ^
../../../src/kernel/gen_ad.c:618:21: warning: unused variable 'l1' [-Wunused-variable]
   int i,j,j1,k,k1,l,l1,m,n,e,N;
                     ^~
../../../src/kernel/gen_ad.c:618:19: warning: unused variable 'l' [-Wunused-variable]
   int i,j,j1,k,k1,l,l1,m,n,e,N;
                   ^
../../../src/kernel/gen_ad.c:618:16: warning: unused variable 'k1' [-Wunused-variable]
   int i,j,j1,k,k1,l,l1,m,n,e,N;
                ^~
../../../src/kernel/gen_ad.c:618:14: warning: unused variable 'k' [-Wunused-variable]
   int i,j,j1,k,k1,l,l1,m,n,e,N;
              ^
../../../src/kernel/gen_ad.c:618:11: warning: unused variable 'j1' [-Wunused-variable]
   int i,j,j1,k,k1,l,l1,m,n,e,N;
           ^~
At top level:
../../../src/kernel/gen_ad.c:327:13: warning: 'dump_param' defined but not used [-Wunused-function]
 static void dump_param(FILE *fp,char *title,int n,t_param ps[])
             ^~~~~~~~~~
../../../src/kernel/gen_ad.c:289:13: warning: 'ideq' defined but not used [-Wunused-function]
 static bool ideq(t_param *p1, t_param *p2)
             ^~~~
../../../src/kernel/gen_ad.c:114:13: warning: 'aeq' defined but not used [-Wunused-function]
 static bool aeq(t_param *p1, t_param *p2)
             ^~~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/resall.h:41,
                 from ../../../src/kernel/gen_ad.c:57:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/kernel/topio.h:41,
                 from ../../../src/kernel/gen_ad.c:51:
../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable]
 static const char *couple_lam[ecouplamNR+1]    = {
                    ^~~~~~~~~~
../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable]
 static const char *constraints[eshNR+1]    = {
                    ^~~~~~~~~~~
In file included from ../../../src/kernel/readir.h:42,
                 from ../../../src/kernel/topio.h:41,
                 from ../../../src/kernel/gen_ad.c:51:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/toputil.h:40,
                 from ../../../src/kernel/gen_ad.c:50:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/gen_ad.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/gen_ad.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o sorting.lo ../../../src/kernel/sorting.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/sorting.c  -fPIC -DPIC -o .libs/sorting.o
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o tomorse.lo ../../../src/kernel/tomorse.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/tomorse.c  -fPIC -DPIC -o .libs/tomorse.o
In file included from ../../../src/kernel/tomorse.c:46:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o topexcl.lo ../../../src/kernel/topexcl.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/topexcl.c  -fPIC -DPIC -o .libs/topexcl.o
In file included from ../../../include/gpp_nextnb.h:40,
                 from ../../../src/kernel/topexcl.c:45:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o ter_db.lo ../../../src/kernel/ter_db.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/ter_db.c  -fPIC -DPIC -o .libs/ter_db.o
../../../src/kernel/ter_db.c: In function 'print_ter_db':
../../../src/kernel/ter_db.c:105:20: warning: unused variable 'nname' [-Wunused-variable]
   char buf[STRLEN],nname[STRLEN];
                    ^~~~~
../../../src/kernel/ter_db.c: In function 'filter_ter':
../../../src/kernel/ter_db.c:301:12: warning: unused variable 's2' [-Wunused-variable]
   char *s,*s2,*c;
            ^~
../../../src/kernel/ter_db.c:299:13: warning: unused variable 'len' [-Wunused-variable]
   int i,j,n,len,none_idx;
             ^~~
In file included from ../../../src/kernel/hackblock.h:42,
                 from ../../../src/kernel/resall.h:41,
                 from ../../../src/kernel/ter_db.c:45:
At top level:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/resall.h:41,
                 from ../../../src/kernel/ter_db.c:45:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o resall.lo ../../../src/kernel/resall.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/resall.c  -fPIC -DPIC -o .libs/resall.o
In file included from ../../../src/kernel/hackblock.h:42,
                 from ../../../src/kernel/resall.h:41,
                 from ../../../src/kernel/resall.c:49:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/resall.h:41,
                 from ../../../src/kernel/resall.c:49:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o specbond.lo ../../../src/kernel/specbond.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/specbond.c  -fPIC -DPIC -o .libs/specbond.o
In file included from ../../../src/kernel/specbond.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/specbond.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/pdb2top.h:41,
                 from ../../../src/kernel/specbond.h:40,
                 from ../../../src/kernel/specbond.c:47:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/specbond.c:43:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
../../../src/kernel/specbond.c: In function 'mk_specbonds':
../../../src/kernel/specbond.c:236:19: warning: '%d' directive writing between 1 and 11 bytes into a region of size 10 [-Wformat-overflow=]
    sprintf(buf,"%s%d",*pdba->resname[pdba->atom[sgp[i]].resnr],
                   ^~
../../../src/kernel/specbond.c:236:16: note: directive argument in the range [-2147483647, 2147483647]
    sprintf(buf,"%s%d",*pdba->resname[pdba->atom[sgp[i]].resnr],
                ^~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../include/typedefs.h:52,
                 from ../../../src/kernel/specbond.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 2 or more bytes (assuming 12) into a destination of size 10
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/kernel/specbond.c:245:19: warning: '%d' directive writing between 1 and 11 bytes into a region of size 10 [-Wformat-overflow=]
    sprintf(buf,"%s%d",*pdba->atomname[sgp[i]], sgp[i]+1);
                   ^~
../../../src/kernel/specbond.c:245:16: note: directive argument in the range [-2147483647, 2147483647]
    sprintf(buf,"%s%d",*pdba->atomname[sgp[i]], sgp[i]+1);
                ^~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../include/typedefs.h:52,
                 from ../../../src/kernel/specbond.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 2 or more bytes (assuming 12) into a destination of size 10
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/kernel/specbond.c:252:19: warning: '%d' directive writing between 1 and 11 bytes into a region of size 10 [-Wformat-overflow=]
    sprintf(buf,"%s%d",*pdba->resname[pdba->atom[sgp[i]].resnr],
                   ^~
../../../src/kernel/specbond.c:252:16: note: directive argument in the range [-2147483647, 2147483647]
    sprintf(buf,"%s%d",*pdba->resname[pdba->atom[sgp[i]].resnr],
                ^~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../include/typedefs.h:52,
                 from ../../../src/kernel/specbond.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 2 or more bytes (assuming 12) into a destination of size 10
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/kernel/specbond.c:255:19: warning: '%d' directive writing between 1 and 11 bytes into a region of size 10 [-Wformat-overflow=]
    sprintf(buf,"%s%d", *pdba->atomname[sgp[i]], sgp[i]+1);
                   ^~
../../../src/kernel/specbond.c:255:16: note: directive argument in the range [-2147483647, 2147483647]
    sprintf(buf,"%s%d", *pdba->atomname[sgp[i]], sgp[i]+1);
                ^~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../include/typedefs.h:52,
                 from ../../../src/kernel/specbond.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 2 or more bytes (assuming 12) into a destination of size 10
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o topdirs.lo ../../../src/kernel/topdirs.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/topdirs.c  -fPIC -DPIC -o .libs/topdirs.o
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o topshake.lo ../../../src/kernel/topshake.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/topshake.c  -fPIC -DPIC -o .libs/topshake.o
../../../src/kernel/topshake.c: In function 'make_shake':
../../../src/kernel/topshake.c:98:19: warning: unused variable 'b' [-Wunused-variable]
   int          nb,b,i,j,ftype,ftype_a;
                   ^
../../../src/kernel/topshake.c:98:16: warning: unused variable 'nb' [-Wunused-variable]
   int          nb,b,i,j,ftype,ftype_a;
                ^~
In file included from ../../../src/kernel/topshake.c:46:
At top level:
../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable]
 static const char *couple_lam[ecouplamNR+1]    = {
                    ^~~~~~~~~~
../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable]
 static const char *constraints[eshNR+1]    = {
                    ^~~~~~~~~~~
In file included from ../../../src/kernel/readir.h:43,
                 from ../../../src/kernel/topshake.c:46:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/readir.h:42,
                 from ../../../src/kernel/topshake.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o toputil.lo ../../../src/kernel/toputil.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/toputil.c  -fPIC -DPIC -o .libs/toputil.o
../../../src/kernel/toputil.c:135:13: warning: 'print_nbt' defined but not used [-Wunused-function]
 static void print_nbt (FILE *out,char *title,t_atomtype at,
             ^~~~~~~~~
In file included from ../../../src/kernel/topdirs.h:40,
                 from ../../../src/kernel/toputil.c:45:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o glaasje.o ../../../src/kernel/glaasje.c
../../../src/kernel/glaasje.c: In function 'do_glas':
../../../src/kernel/glaasje.c:55:40: warning: unused variable 'r3' [-Wunused-variable]
   real wd,wdd,zi,fz,dd,d10,d4,d9,d3,r9,r3,sign,cc6,cc12;
                                        ^~
../../../src/kernel/glaasje.c:55:37: warning: unused variable 'r9' [-Wunused-variable]
   real wd,wdd,zi,fz,dd,d10,d4,d9,d3,r9,r3,sign,cc6,cc12;
                                     ^~
In file included from ../../../src/kernel/glaasje.c:44:
At top level:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o xlate.lo ../../../src/kernel/xlate.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/xlate.c  -fPIC -DPIC -o .libs/xlate.o
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o toppush.lo ../../../src/kernel/toppush.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/toppush.c  -fPIC -DPIC -o .libs/toppush.o
../../../src/kernel/toppush.c: In function 'push_bt':
../../../src/kernel/toppush.c:573:37: warning: variable 'nrfpB' set but not used [-Wunused-but-set-variable]
   int      i,ft,ftype,nn,nrfp,nrfpA,nrfpB;
                                     ^~~~~
../../../src/kernel/toppush.c: In function 'push_dihedraltype':
../../../src/kernel/toppush.c:661:37: warning: variable 'nrfpB' set but not used [-Wunused-but-set-variable]
   int      i,ft,ftype,nn,nrfp,nrfpA,nrfpB,nral;
                                     ^~~~~
../../../src/kernel/toppush.c: In function 'push_nbt':
../../../src/kernel/toppush.c:778:17: warning: unused variable 'sig6' [-Wunused-variable]
   real    cr[4],sig6;
                 ^~~~
../../../src/kernel/toppush.c:776:23: warning: unused variable 'atnr' [-Wunused-variable]
   int     i,f,n,ftype,atnr,nrfp;
                       ^~~~
../../../src/kernel/toppush.c: In function 'push_atom_now':
../../../src/kernel/toppush.c:871:7: warning: unused variable 'j' [-Wunused-variable]
   int j,resnr_diff=-1;
       ^
../../../src/kernel/toppush.c: In function 'push_bond':
../../../src/kernel/toppush.c:1234:18: warning: unused variable 'paramB' [-Wunused-variable]
   t_param  param,paramB,*param_defA,*param_defB;
                  ^~~~~~
In file included from ../../../src/kernel/toppush.c:51:
At top level:
../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable]
 static const char *couple_lam[ecouplamNR+1]    = {
                    ^~~~~~~~~~
../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable]
 static const char *constraints[eshNR+1]    = {
                    ^~~~~~~~~~~
In file included from ../../../src/kernel/readir.h:42,
                 from ../../../src/kernel/toppush.c:51:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/toputil.h:40,
                 from ../../../src/kernel/toppush.c:48:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
../../../src/kernel/toppush.c: In function 'push_at':
../../../src/kernel/toppush.c:446:41: warning: '%s' directive writing up to 4095 bytes into a region of size 236 [-Wformat-overflow=]
     sprintf(errbuf,"Overriding atomtype %s",type);
                                         ^~  ~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/kernel/toppush.c:43:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 21 and 4116 bytes into a destination of size 256
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gen_vsite.lo ../../../src/kernel/gen_vsite.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/gen_vsite.c  -fPIC -DPIC -o .libs/gen_vsite.o
../../../src/kernel/gen_vsite.c: In function 'read_vsite_database':
../../../src/kernel/gen_vsite.c:150:34: warning: unused variable 'prevdir' [-Wunused-variable]
   int i,j,n,k,nvsite,ntop,curdir,prevdir;
                                  ^~~~~~~
../../../src/kernel/gen_vsite.c:150:9: warning: unused variable 'j' [-Wunused-variable]
   int i,j,n,k,nvsite,ntop,curdir,prevdir;
         ^
../../../src/kernel/gen_vsite.c: In function 'add_vsites':
../../../src/kernel/gen_vsite.c:477:33: warning: unused variable 'bb' [-Wunused-variable]
   int i,j,ftype,other,moreheavy,bb;
                                 ^~
../../../src/kernel/gen_vsite.c: In function 'gen_vsites_6ring':
../../../src/kernel/gen_vsite.c:560:32: warning: variable 'yCE2' set but not used [-Wunused-but-set-variable]
    real xCG,yCG,xCE1,yCE1,xCE2,yCE2;
                                ^~~~
../../../src/kernel/gen_vsite.c:560:27: warning: variable 'xCE2' set but not used [-Wunused-but-set-variable]
    real xCG,yCG,xCE1,yCE1,xCE2,yCE2;
                           ^~~~
../../../src/kernel/gen_vsite.c:560:22: warning: variable 'yCE1' set but not used [-Wunused-but-set-variable]
    real xCG,yCG,xCE1,yCE1,xCE2,yCE2;
                      ^~~~
../../../src/kernel/gen_vsite.c:560:17: warning: variable 'xCE1' set but not used [-Wunused-but-set-variable]
    real xCG,yCG,xCE1,yCE1,xCE2,yCE2;
                 ^~~~
../../../src/kernel/gen_vsite.c:560:13: warning: variable 'yCG' set but not used [-Wunused-but-set-variable]
    real xCG,yCG,xCE1,yCE1,xCE2,yCE2;
             ^~~
../../../src/kernel/gen_vsite.c: In function 'calc_vsite3_param':
../../../src/kernel/gen_vsite.c:693:13: warning: variable 'b_ik' set but not used [-Wunused-but-set-variable]
   real b_ij,b_ik;
             ^~~~
../../../src/kernel/gen_vsite.c:693:8: warning: variable 'b_ij' set but not used [-Wunused-but-set-variable]
   real b_ij,b_ik;
        ^~~~
../../../src/kernel/gen_vsite.c: In function 'gen_vsites_trp':
../../../src/kernel/gen_vsite.c:741:12: warning: unused variable 'c' [-Wunused-variable]
   real a,b,c[MAXFORCEPARAM];
            ^
../../../src/kernel/gen_vsite.c:740:14: warning: unused variable 'mtot' [-Wunused-variable]
   real mwtot,mtot,mM[NMASS],dCBM1,dCBM2,dM1M2;
              ^~~~
../../../src/kernel/gen_vsite.c:740:8: warning: unused variable 'mwtot' [-Wunused-variable]
   real mwtot,mtot,mM[NMASS],dCBM1,dCBM2,dM1M2;
        ^~~~~
../../../src/kernel/gen_vsite.c:738:8: warning: unused variable 'xM' [-Wunused-variable]
   real xM[NMASS];
        ^~
../../../src/kernel/gen_vsite.c:735:8: warning: variable 'a_CB_CG_CD1' set but not used [-Wunused-but-set-variable]
   real a_CB_CG_CD1,a_CD2_CG_CD1,a_CE2_CZ2_HZ2,a_CZ2_CH2_HH2;
        ^~~~~~~~~~~
../../../src/kernel/gen_vsite.c:729:20: warning: unused variable 'dist' [-Wunused-variable]
   real lineA,lineB,dist;
                    ^~~~
../../../src/kernel/gen_vsite.c:729:14: warning: variable 'lineB' set but not used [-Wunused-but-set-variable]
   real lineA,lineB,dist;
              ^~~~~
../../../src/kernel/gen_vsite.c:728:32: warning: unused variable 'I' [-Wunused-variable]
   real xcom[NMASS],ycom[NMASS],I,alpha;
                                ^
../../../src/kernel/gen_vsite.c: In function 'gen_vsites_tyr':
../../../src/kernel/gen_vsite.c:968:8: warning: unused variable 'vmass' [-Wunused-variable]
   real vmass,vdist,mM;
        ^~~~~
../../../src/kernel/gen_vsite.c: In function 'do_vsites':
../../../src/kernel/gen_vsite.c:1332:29: warning: unused variable 'bb' [-Wunused-variable]
   int  Hatoms[4],heavies[4],bb;
                             ^~
In file included from ../../../src/kernel/gen_vsite.c:48:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/gen_vsite.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/gen_vsite.h:43,
                 from ../../../src/kernel/gen_vsite.c:44:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/kernel/gen_vsite.h:41,
                 from ../../../src/kernel/gen_vsite.c:44:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o topio.lo ../../../src/kernel/topio.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/topio.c  -fPIC -DPIC -o .libs/topio.o
../../../src/kernel/topio.c: In function 'read_topol':
../../../src/kernel/topio.c:474:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
      else
      ^~~~
../../../src/kernel/topio.c:476:8: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else'
        break;
        ^~~~~
../../../src/kernel/topio.c:314:15: warning: unused variable 'block' [-Wunused-variable]
   t_topology *block=NULL;
               ^~~~~
In file included from ../../../src/kernel/topio.h:41,
                 from ../../../src/kernel/topio.c:66:
At top level:
../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable]
 static const char *couple_lam[ecouplamNR+1]    = {
                    ^~~~~~~~~~
../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable]
 static const char *constraints[eshNR+1]    = {
                    ^~~~~~~~~~~
In file included from ../../../src/kernel/readir.h:42,
                 from ../../../src/kernel/topio.h:41,
                 from ../../../src/kernel/topio.c:66:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/vsite_parm.h:41,
                 from ../../../src/kernel/topio.c:59:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o ionize.o ../../../src/kernel/ionize.c
../../../src/kernel/ionize.c: In function 'ionize':
../../../src/kernel/ionize.c:735:2: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
  if (bL)
  ^~
../../../src/kernel/ionize.c:737:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
    if (ephot == 2) E_lost += 0.5; /* Real energy should be 2.5 KeV*/
    ^~
In file included from ../../../src/kernel/ionize.c:48:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/ionize.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o vsite_parm.lo ../../../src/kernel/vsite_parm.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/vsite_parm.c  -fPIC -DPIC -o .libs/vsite_parm.o
../../../src/kernel/vsite_parm.c: In function 'clean_vsite_bonds':
../../../src/kernel/vsite_parm.c:862:62: warning: unused variable 'vsitetype' [-Wunused-variable]
   int      ftype,i,j,parnr,k,l,m,n,nvsite,nOut,kept_i,vsnral,vsitetype;
                                                              ^~~~~~~~~
../../../src/kernel/vsite_parm.c:862:30: warning: unused variable 'l' [-Wunused-variable]
   int      ftype,i,j,parnr,k,l,m,n,nvsite,nOut,kept_i,vsnral,vsitetype;
                              ^
../../../src/kernel/vsite_parm.c:862:22: warning: unused variable 'parnr' [-Wunused-variable]
   int      ftype,i,j,parnr,k,l,m,n,nvsite,nOut,kept_i,vsnral,vsitetype;
                      ^~~~~
../../../src/kernel/vsite_parm.c: In function 'clean_vsite_angles':
../../../src/kernel/vsite_parm.c:1035:51: warning: unused variable 'vsitetype' [-Wunused-variable]
   int      i,j,parnr,k,l,m,n,nvsite,kept_i,vsnral,vsitetype;
                                                   ^~~~~~~~~
../../../src/kernel/vsite_parm.c:1035:24: warning: unused variable 'l' [-Wunused-variable]
   int      i,j,parnr,k,l,m,n,nvsite,kept_i,vsnral,vsitetype;
                        ^
../../../src/kernel/vsite_parm.c:1035:16: warning: unused variable 'parnr' [-Wunused-variable]
   int      i,j,parnr,k,l,m,n,nvsite,kept_i,vsnral,vsitetype;
                ^~~~~
../../../src/kernel/vsite_parm.c: In function 'clean_vsite_dihs':
../../../src/kernel/vsite_parm.c:1130:28: warning: unused variable 'l' [-Wunused-variable]
   int      ftype,i,parnr,k,l,m,n,nvsite,kept_i,vsnral;
                            ^
../../../src/kernel/vsite_parm.c:1130:20: warning: unused variable 'parnr' [-Wunused-variable]
   int      ftype,i,parnr,k,l,m,n,nvsite,kept_i,vsnral;
                    ^~~~~
../../../src/kernel/vsite_parm.c:1130:12: warning: unused variable 'ftype' [-Wunused-variable]
   int      ftype,i,parnr,k,l,m,n,nvsite,kept_i,vsnral;
            ^~~~~
In file included from ../../../src/kernel/vsite_parm.c:47:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/vsite_parm.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/resall.h:41,
                 from ../../../src/kernel/vsite_parm.c:45:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/kernel/vsite_parm.h:41,
                 from ../../../src/kernel/vsite_parm.c:43:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o readir.lo ../../../src/kernel/readir.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/readir.c  -fPIC -DPIC -o .libs/readir.o
../../../src/kernel/readir.c: In function 'do_index':
../../../src/kernel/readir.c:1427:38: warning: variable 'nbTS' set but not used [-Wunused-but-set-variable]
     nSAon,nSAoff,nSAsteps,nQMg,nbOPT,nbTS;
                                      ^~~~
../../../src/kernel/readir.c:1427:32: warning: variable 'nbOPT' set but not used [-Wunused-but-set-variable]
     nSAon,nSAoff,nSAsteps,nQMg,nbOPT,nbTS;
                                ^~~~~
../../../src/kernel/readir.c:1427:18: warning: variable 'nSAsteps' set but not used [-Wunused-but-set-variable]
     nSAon,nSAoff,nSAsteps,nQMg,nbOPT,nbTS;
                  ^~~~~~~~
../../../src/kernel/readir.c:1427:11: warning: variable 'nSAoff' set but not used [-Wunused-but-set-variable]
     nSAon,nSAoff,nSAsteps,nQMg,nbOPT,nbTS;
           ^~~~~~
../../../src/kernel/readir.c:1427:5: warning: variable 'nSAon' set but not used [-Wunused-but-set-variable]
     nSAon,nSAoff,nSAsteps,nQMg,nbOPT,nbTS;
     ^~~~~
../../../src/kernel/readir.c:1426:61: warning: variable 'nCASelec' set but not used [-Wunused-but-set-variable]
   int     nQMmethod,nQMbasis,nQMcharge,nQMmult,nbSH,nCASorb,nCASelec,
                                                             ^~~~~~~~
../../../src/kernel/readir.c:1426:53: warning: variable 'nCASorb' set but not used [-Wunused-but-set-variable]
   int     nQMmethod,nQMbasis,nQMcharge,nQMmult,nbSH,nCASorb,nCASelec,
                                                     ^~~~~~~
../../../src/kernel/readir.c:1426:48: warning: variable 'nbSH' set but not used [-Wunused-but-set-variable]
   int     nQMmethod,nQMbasis,nQMcharge,nQMmult,nbSH,nCASorb,nCASelec,
                                                ^~~~
../../../src/kernel/readir.c:1426:40: warning: variable 'nQMmult' set but not used [-Wunused-but-set-variable]
   int     nQMmethod,nQMbasis,nQMcharge,nQMmult,nbSH,nCASorb,nCASelec,
                                        ^~~~~~~
../../../src/kernel/readir.c:1426:30: warning: variable 'nQMcharge' set but not used [-Wunused-but-set-variable]
   int     nQMmethod,nQMbasis,nQMcharge,nQMmult,nbSH,nCASorb,nCASelec,
                              ^~~~~~~~~
../../../src/kernel/readir.c:1424:11: warning: unused variable 'SAtime' [-Wunused-variable]
   real    SAtime;
           ^~~~~~
../../../src/kernel/readir.c: In function 'triple_check':
../../../src/kernel/readir.c:1872:17: warning: unused variable 'npct' [-Wunused-variable]
   int  i,m,nmol,npct;
                 ^~~~
In file included from ../../../src/kernel/readir.c:58:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/readir.c:58:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/readir.h:43,
                 from ../../../src/kernel/readir.c:54:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/readir.c:53:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gctio.o ../../../src/kernel/gctio.c
In file included from ../../../src/kernel/gctio.c:49:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/xmdrun.h:50,
                 from ../../../src/kernel/gctio.c:41:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o genalg.o ../../../src/kernel/genalg.c
../../../src/kernel/genalg.c: In function 'update_ga':
../../../src/kernel/genalg.c:197:12: warning: unused variable 'j' [-Wunused-variable]
   int   i, j, L, n;      /* counting variables                 */
            ^
In file included from ../../../src/kernel/genalg.c:75:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/genalg.c:75:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o tpbcmp.lo ../../../src/kernel/tpbcmp.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/tpbcmp.c  -fPIC -DPIC -o .libs/tpbcmp.o
../../../src/kernel/tpbcmp.c: In function 'cmp_block':
../../../src/kernel/tpbcmp.c:242:11: warning: unused variable 'k' [-Wunused-variable]
   int i,j,k;
           ^
../../../src/kernel/tpbcmp.c:242:9: warning: unused variable 'j' [-Wunused-variable]
   int i,j,k;
         ^
../../../src/kernel/tpbcmp.c:242:7: warning: unused variable 'i' [-Wunused-variable]
   int i,j,k;
       ^
../../../src/kernel/tpbcmp.c: In function 'cmp_blocka':
../../../src/kernel/tpbcmp.c:252:11: warning: unused variable 'k' [-Wunused-variable]
   int i,j,k;
           ^
../../../src/kernel/tpbcmp.c:252:9: warning: unused variable 'j' [-Wunused-variable]
   int i,j,k;
         ^
../../../src/kernel/tpbcmp.c:252:7: warning: unused variable 'i' [-Wunused-variable]
   int i,j,k;
       ^
../../../src/kernel/tpbcmp.c: In function 'cmp_atom':
../../../src/kernel/tpbcmp.c:265:8: warning: unused variable 'buf' [-Wunused-variable]
   char buf[256];
        ^~~
../../../src/kernel/tpbcmp.c:264:8: warning: unused variable 'i' [-Wunused-variable]
   int  i;
        ^
../../../src/kernel/tpbcmp.c: In function 'cmp_top':
../../../src/kernel/tpbcmp.c:302:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/kernel/tpbcmp.c: In function 'comp_tpx':
../../../src/kernel/tpbcmp.c:567:15: warning: unused variable 'sh' [-Wunused-variable]
   t_tpxheader sh[2];
               ^~
../../../src/kernel/tpbcmp.c: In function 'comp_enx':
../../../src/kernel/tpbcmp.c:723:38: warning: unused variable 'buf' [-Wunused-variable]
   char       **enm1=NULL,**enm2=NULL,buf[256];
                                      ^~~
../../../src/kernel/tpbcmp.c:721:36: warning: unused variable 'block' [-Wunused-variable]
   int        in1,in2,nre,nre1,nre2,block;
                                    ^~~~~
At top level:
../../../src/kernel/tpbcmp.c:77:13: warning: 'cmp_uc' defined but not used [-Wunused-function]
 static void cmp_uc(FILE *fp,char *s,int index,unsigned char i1,unsigned char i2)
             ^~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/tpbcmp.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o protonate.o ../../../src/kernel/protonate.c
In file included from ../../../src/kernel/protonate.c:50:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/protonate.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/hackblock.h:42,
                 from ../../../src/kernel/genhydro.h:41,
                 from ../../../src/kernel/protonate.c:47:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/genhydro.h:40,
                 from ../../../src/kernel/protonate.c:47:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/protonate.c:45:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/protonate.c:43:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o tpbconv.o ../../../src/kernel/tpbconv.c
../../../src/kernel/tpbconv.c: In function 'main':
../../../src/kernel/tpbconv.c:365:7: warning: unused variable 'nerror' [-Wunused-variable]
   int nerror = 0;
       ^~~~~~
../../../src/kernel/tpbconv.c:325:17: warning: unused variable 'gopts' [-Wunused-variable]
   t_gromppopts *gopts;
                 ^~~~~
../../../src/kernel/tpbconv.c:324:21: warning: unused variable 'irnew' [-Wunused-variable]
   t_inputrec   *ir,*irnew=NULL;
                     ^~~~~
../../../src/kernel/tpbconv.c:318:33: warning: unused variable 'nsteps_org' [-Wunused-variable]
   int          i,frame,run_step,nsteps_org;
                                 ^~~~~~~~~~
In file included from ../../../src/kernel/tpbconv.c:56:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/tpbconv.c:56:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/tpbconv.c:54:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/kernel/tpbconv.c:52:
../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable]
 static const char *couple_lam[ecouplamNR+1]    = {
                    ^~~~~~~~~~
../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable]
 static const char *constraints[eshNR+1]    = {
                    ^~~~~~~~~~~
In file included from ../../../src/kernel/readir.h:43,
                 from ../../../src/kernel/tpbconv.c:52:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/readir.h:42,
                 from ../../../src/kernel/tpbconv.c:52:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o mdrun.o ../../../src/kernel/mdrun.c
../../../src/kernel/mdrun.c: In function 'main':
../../../src/kernel/mdrun.c:387:20: warning: unused variable 'fptest' [-Wunused-variable]
   FILE     *fplog,*fptest;
                    ^~~~~~
../../../src/kernel/mdrun.c:386:12: warning: unused variable 'HaveCheckpoint' [-Wunused-variable]
   bool     HaveCheckpoint;
            ^~~~~~~~~~~~~~
../../../src/kernel/mdrun.c:285:15: warning: unused variable 'bPPPME' [-Wunused-variable]
   static bool bPPPME       = FALSE;
               ^~~~~~
../../../src/kernel/mdrun.c:284:15: warning: unused variable 'bCart' [-Wunused-variable]
   static bool bCart        = FALSE;
               ^~~~~
At top level:
../../../src/kernel/mdrun.c:284:15: warning: 'bCart' defined but not used [-Wunused-variable]
../../../src/kernel/mdrun.c:285:15: warning: 'bPPPME' defined but not used [-Wunused-variable]
   static bool bPPPME       = FALSE;
               ^~~~~~
In file included from ../../../include/pull.h:44,
                 from ../../../include/mdrun.h:56,
                 from ../../../src/kernel/mdrun.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../include/pull.h:44,
                 from ../../../include/mdrun.h:56,
                 from ../../../src/kernel/mdrun.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/mdrun.h:50,
                 from ../../../src/kernel/mdrun.c:49:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/mdrun.c:44:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/mdrun.c:42:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o luck.o ../../../src/kernel/luck.c
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/luck.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/luck.c:41:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o xutils.o ../../../src/kernel/xutils.c
../../../src/kernel/xutils.c: In function 'calc_mu_aver':
../../../src/kernel/xutils.c:65:19: warning: variable 'end' set but not used [-Wunused-but-set-variable]
   int     i,start,end;
                   ^~~
../../../src/kernel/xutils.c: In function 'update_forcefield':
../../../src/kernel/xutils.c:335:10: warning: unused variable 'bDone' [-Wunused-variable]
   bool   bDone;
          ^~~~~
In file included from ../../../src/kernel/xutils.c:45:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/xutils.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/xmdrun.h:50,
                 from ../../../src/kernel/xutils.c:44:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o repl_ex.o ../../../src/kernel/repl_ex.c
../../../src/kernel/repl_ex.c: In function 'init_replica_exchange':
../../../src/kernel/repl_ex.c:111:8: warning: unused variable 'temp' [-Wunused-variable]
   real temp,pres;
        ^~~~
../../../src/kernel/repl_ex.c: In function 'replica_exchange':
../../../src/kernel/repl_ex.c:560:20: warning: unused variable 'shift' [-Wunused-variable]
   int  exchange=-1,shift;
                    ^~~~~
At top level:
../../../src/kernel/repl_ex.c:544:13: warning: 'write_debug_x' defined but not used [-Wunused-function]
 static void write_debug_x(t_state *state)
             ^~~~~~~~~~~~~
In file included from ../../../src/kernel/repl_ex.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/repl_ex.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/repl_ex.c:46:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmxcheck.o ../../../src/kernel/gmxcheck.c
../../../src/kernel/gmxcheck.c: In function 'tpx2system':
../../../src/kernel/gmxcheck.c:90:7: warning: unused variable 'i' [-Wunused-variable]
   int i,nmol,nvsite=0;
       ^
../../../src/kernel/gmxcheck.c: In function 'tpx2methods':
../../../src/kernel/gmxcheck.c:140:15: warning: unused variable 'i' [-Wunused-variable]
   int         i,step;
               ^
../../../src/kernel/gmxcheck.c:136:15: warning: unused variable 'sh' [-Wunused-variable]
   t_tpxheader sh;
               ^~
../../../src/kernel/gmxcheck.c: In function 'chk_bonds':
../../../src/kernel/gmxcheck.c:202:26: warning: variable 'devtot' set but not used [-Wunused-but-set-variable]
   real b0,blen,deviation,devtot;
                          ^~~~~~
../../../src/kernel/gmxcheck.c:201:14: warning: unused variable 'i' [-Wunused-variable]
   int  ftype,i,k,ai,aj,type;
              ^
../../../src/kernel/gmxcheck.c: In function 'chk_trj':
../../../src/kernel/gmxcheck.c:252:35: warning: unused variable 'bOK' [-Wunused-variable]
   bool         bShowTimestep=TRUE,bOK,newline=FALSE;
                                   ^~~
../../../src/kernel/gmxcheck.c:251:40: warning: unused variable 'prec' [-Wunused-variable]
   real         rdum,t,tt,old_t1,old_t2,prec;
                                        ^~~~
../../../src/kernel/gmxcheck.c:251:23: warning: unused variable 'tt' [-Wunused-variable]
   real         rdum,t,tt,old_t1,old_t2,prec;
                       ^~
../../../src/kernel/gmxcheck.c:251:16: warning: unused variable 'rdum' [-Wunused-variable]
   real         rdum,t,tt,old_t1,old_t2,prec;
                ^~~~
../../../src/kernel/gmxcheck.c:250:16: warning: variable 'fpos' set but not used [-Wunused-but-set-variable]
   off_t        fpos;
                ^~~~
../../../src/kernel/gmxcheck.c: In function 'chk_ndx':
../../../src/kernel/gmxcheck.c:526:10: warning: unused variable 'j' [-Wunused-variable]
   int  i,j;
          ^
../../../src/kernel/gmxcheck.c: In function 'chk_enx':
../../../src/kernel/gmxcheck.c:550:25: warning: unused variable 'ndr' [-Wunused-variable]
   int        in,nre,fnr,ndr;
                         ^~~
In file included from ../../../src/kernel/gmxcheck.c:57:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/gmxcheck.c:57:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/gmxcheck.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/gmxcheck.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o x2top.o ../../../src/kernel/x2top.c
../../../src/kernel/x2top.c: In function 'set_cgnr':
../../../src/kernel/x2top.c:178:15: warning: unused variable 'mt' [-Wunused-variable]
   double qt=0,mt=0;
               ^~
../../../src/kernel/x2top.c: In function 'set_force_const':
../../../src/kernel/x2top.c:255:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/kernel/x2top.c: In function 'main':
../../../src/kernel/x2top.c:419:15: warning: unused variable 'scale' [-Wunused-variable]
   static real scale = 1.1, kb = 4e5,kt = 400,kp = 5;
               ^~~~~
../../../src/kernel/x2top.c:411:14: warning: unused variable 'cutoff' [-Wunused-variable]
   real       cutoff,qtot,mtot;
              ^~~~~~
../../../src/kernel/x2top.c:408:24: warning: unused variable 'ndih' [-Wunused-variable]
   int        i,j,k,l,m,ndih;
                        ^~~~
../../../src/kernel/x2top.c:408:22: warning: unused variable 'm' [-Wunused-variable]
   int        i,j,k,l,m,ndih;
                      ^
../../../src/kernel/x2top.c:408:20: warning: unused variable 'l' [-Wunused-variable]
   int        i,j,k,l,m,ndih;
                    ^
../../../src/kernel/x2top.c:408:18: warning: unused variable 'k' [-Wunused-variable]
   int        i,j,k,l,m,ndih;
                  ^
../../../src/kernel/x2top.c:408:16: warning: unused variable 'j' [-Wunused-variable]
   int        i,j,k,l,m,ndih;
                ^
../../../src/kernel/x2top.c:408:14: warning: unused variable 'i' [-Wunused-variable]
   int        i,j,k,l,m,ndih;
              ^
../../../src/kernel/x2top.c:407:14: warning: unused variable 'nres' [-Wunused-variable]
   int        nres;         /* number of molecules? */
              ^~~~
At top level:
../../../src/kernel/x2top.c:419:15: warning: 'scale' defined but not used [-Wunused-variable]
   static real scale = 1.1, kb = 4e5,kt = 400,kp = 5;
               ^~~~~
../../../src/kernel/x2top.c:117:12: warning: 'get_atype' defined but not used [-Wunused-function]
 static int get_atype(char *nm)
            ^~~~~~~~~
../../../src/kernel/x2top.c:80:13: warning: 'set_x_blen' defined but not used [-Wunused-function]
 static real set_x_blen(real scale)
             ^~~~~~~~~~
In file included from ../../../src/kernel/topio.h:41,
                 from ../../../src/kernel/gen_ad.h:42,
                 from ../../../src/kernel/x2top.c:60:
../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable]
 static const char *couple_lam[ecouplamNR+1]    = {
                    ^~~~~~~~~~
../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable]
 static const char *constraints[eshNR+1]    = {
                    ^~~~~~~~~~~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/pdb2top.h:43,
                 from ../../../src/kernel/x2top.c:59:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/kernel/toputil.h:40,
                 from ../../../src/kernel/toppush.h:41,
                 from ../../../src/kernel/x2top.c:58:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/x2top.c:52:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/x2top.c:51:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/x2top.c:42:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/kernel/x2top.c:40:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o libgmxpreprocess_mpi_d.la  add_par.lo compute_io.lo convparm.lo gen_ad.lo gen_vsite.lo genhydro.lo gmxcpp.lo gpp_atomtype.lo gpp_bond_atomtype.lo h_db.lo hackblock.lo hizzie.lo pdb2top.lo pgutil.lo readir.lo readpull.lo resall.lo sorting.lo specbond.lo ter_db.lo tomorse.lo topdirs.lo topexcl.lo topio.lo toppush.lo topshake.lo toputil.lo tpbcmp.lo vsite_parm.lo xlate.lo  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
ar cru .libs/libgmxpreprocess_mpi_d.a .libs/add_par.o .libs/compute_io.o .libs/convparm.o .libs/gen_ad.o .libs/gen_vsite.o .libs/genhydro.o .libs/gmxcpp.o .libs/gpp_atomtype.o .libs/gpp_bond_atomtype.o .libs/h_db.o .libs/hackblock.o .libs/hizzie.o .libs/pdb2top.o .libs/pgutil.o .libs/readir.o .libs/readpull.o .libs/resall.o .libs/sorting.o .libs/specbond.o .libs/ter_db.o .libs/tomorse.o .libs/topdirs.o .libs/topexcl.o .libs/topio.o .libs/toppush.o .libs/topshake.o .libs/toputil.o .libs/tpbcmp.o .libs/vsite_parm.o .libs/xlate.o
ranlib .libs/libgmxpreprocess_mpi_d.a
creating libgmxpreprocess_mpi_d.la
(cd .libs && rm -f libgmxpreprocess_mpi_d.la && ln -s ../libgmxpreprocess_mpi_d.la libgmxpreprocess_mpi_d.la)
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o pdb2gmx.o ../../../src/kernel/pdb2gmx.c
../../../src/kernel/pdb2gmx.c:149:20: warning: 'get_cystp' defined but not used [-Wunused-function]
 static const char *get_cystp(int resnr)
                    ^~~~~~~~~
In file included from ../../../src/kernel/toputil.h:40,
                 from ../../../src/kernel/pdb2gmx.c:55:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/pdb2gmx.c:54:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/pdb2gmx.c:51:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/pdb2gmx.c:50:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/pdb2gmx.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/pdb2gmx.c:46:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
../../../src/kernel/pdb2gmx.c: In function 'main':
../../../src/kernel/pdb2gmx.c:783:18: warning: '.rtp' directive writing 4 bytes into a region of size between 1 and 4096 [-Wformat-overflow=]
   sprintf(rtp,"%s.rtp",forcefield);
                  ^~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/kernel/pdb2gmx.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 5 and 4100 bytes into a destination of size 4096
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/kernel/pdb2gmx.c:1162:31: warning: '%s' directive writing up to 4095 bytes into a region of size 4089 [-Wformat-overflow=]
       sprintf(molname,"Protein%s",suffix);
                               ^~  ~~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/kernel/pdb2gmx.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 8 and 4103 bytes into a destination of size 4096
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/kernel/pdb2gmx.c:1176:22: warning: '_pr.itp' directive writing 7 bytes into a region of size between 1 and 4096 [-Wformat-overflow=]
  sprintf(posre_fn,"%s_pr.itp",buf_fn);
                      ^~~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/kernel/pdb2gmx.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 8 and 4103 bytes into a destination of size 4096
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmxdump.o ../../../src/kernel/gmxdump.c
../../../src/kernel/gmxdump.c: In function 'list_tpx':
../../../src/kernel/gmxdump.c:146:16: warning: left-hand operand of comma expression has no effect [-Wunused-value]
       if (state,tpx.bF) {
                ^
../../../src/kernel/gmxdump.c:99:20: warning: unused variable 'fp' [-Wunused-variable]
   int         step,fp,indent,i,j,**gcount,atot;
                    ^~
../../../src/kernel/gmxdump.c: In function 'list_ene':
../../../src/kernel/gmxdump.c:314:17: warning: unused variable 'ndr' [-Wunused-variable]
   int        in,ndr;
                 ^~~
At top level:
../../../src/kernel/gmxdump.c:65:13: warning: 'dump_top' defined but not used [-Wunused-function]
 static void dump_top(FILE *fp,t_topology *top,char *tpr)
             ^~~~~~~~
In file included from ../../../src/kernel/gmxdump.c:47:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/gmxdump.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o protonate protonate.o libgmxpreprocess_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -o .libs/protonate protonate.o  ./.libs/libgmxpreprocess_mpi_d.a -lgslcblas -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath 
creating protonate
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o do_gct.o ../../../src/kernel/do_gct.c
../../../src/kernel/do_gct.c: In function 'init_coupling':
../../../src/kernel/do_gct.c:63:19: warning: unused variable 'atj' [-Wunused-variable]
   int         ati,atj;
                   ^~~
../../../src/kernel/do_gct.c:63:15: warning: unused variable 'ati' [-Wunused-variable]
   int         ati,atj;
               ^~~
../../../src/kernel/do_gct.c:62:26: warning: unused variable 'j' [-Wunused-variable]
   int         i,nc,index,j;
                          ^
../../../src/kernel/do_gct.c:62:20: warning: unused variable 'index' [-Wunused-variable]
   int         i,nc,index,j;
                    ^~~~~
../../../src/kernel/do_gct.c:62:17: warning: unused variable 'nc' [-Wunused-variable]
   int         i,nc,index,j;
                 ^~
../../../src/kernel/do_gct.c:62:15: warning: unused variable 'i' [-Wunused-variable]
   int         i,nc,index,j;
               ^
../../../src/kernel/do_gct.c: In function 'do_coupling':
../../../src/kernel/do_gct.c:489:15: warning: unused variable 'bTest' [-Wunused-variable]
   bool        bTest,bPrint;
               ^~~~~
../../../src/kernel/do_gct.c:487:59: warning: unused variable 'xi12' [-Wunused-variable]
   real        Epol,Eintern,Virial,muabs,xiH=-1,xiS=-1,xi6,xi12;
                                                           ^~~~
../../../src/kernel/do_gct.c:487:55: warning: unused variable 'xi6' [-Wunused-variable]
   real        Epol,Eintern,Virial,muabs,xiH=-1,xiS=-1,xi6,xi12;
                                                       ^~~
../../../src/kernel/do_gct.c:486:32: warning: unused variable 'ffc' [-Wunused-variable]
   real        ff6,ff12,ffa,ffb,ffc,ffq,factor,dt,mu_ind;
                                ^~~
../../../src/kernel/do_gct.c:486:28: warning: unused variable 'ffb' [-Wunused-variable]
   real        ff6,ff12,ffa,ffb,ffc,ffq,factor,dt,mu_ind;
                            ^~~
../../../src/kernel/do_gct.c:486:24: warning: unused variable 'ffa' [-Wunused-variable]
   real        ff6,ff12,ffa,ffb,ffc,ffq,factor,dt,mu_ind;
                        ^~~
../../../src/kernel/do_gct.c:485:60: warning: unused variable 'rmsf' [-Wunused-variable]
   real        deviation[eoObsNR],prdev[eoObsNR],epot0,dist,rmsf;
                                                            ^~~~
At top level:
../../../src/kernel/do_gct.c:457:13: warning: 'dump_fm' defined but not used [-Wunused-function]
 static void dump_fm(FILE *fp,int n,real f[],char *s)
             ^~~~~~~
In file included from ../../../src/kernel/do_gct.c:50:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../include/pull.h:44,
                 from ../../../include/mdrun.h:56,
                 from ../../../src/kernel/do_gct.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../include/pull.h:44,
                 from ../../../include/mdrun.h:56,
                 from ../../../src/kernel/do_gct.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/xmdrun.h:50,
                 from ../../../src/kernel/do_gct.c:41:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nm2type.o ../../../src/kernel/nm2type.c
../../../src/kernel/nm2type.c: In function 'rd_nm2type':
../../../src/kernel/nm2type.c:72:20: warning: unused variable 'blen' [-Wunused-variable]
   double    qq,mm,*blen;
                    ^~~~
../../../src/kernel/nm2type.c: In function 'nm2type':
../../../src/kernel/nm2type.c:160:38: warning: unused variable 'quality' [-Wunused-variable]
   int *bbb,*n_mask,*m_mask,**match,**quality;
                                      ^~~~~~~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/pdb2top.h:43,
                 from ../../../src/kernel/nm2type.c:59:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/kernel/toputil.h:40,
                 from ../../../src/kernel/toppush.h:41,
                 from ../../../src/kernel/nm2type.c:58:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/nm2type.c:52:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/nm2type.c:51:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/nm2type.c:44:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/kernel/nm2type.c:42:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o tpbconv tpbconv.o libgmxpreprocess_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -o .libs/tpbconv tpbconv.o  ./.libs/libgmxpreprocess_mpi_d.a -lgslcblas -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath 
creating tpbconv
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o grompp grompp.o libgmxpreprocess_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -o .libs/grompp grompp.o  ./.libs/libgmxpreprocess_mpi_d.a -lgslcblas -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath 
creating grompp
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o gmxcheck gmxcheck.o libgmxpreprocess_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -o .libs/gmxcheck gmxcheck.o  ./.libs/libgmxpreprocess_mpi_d.a -lgslcblas -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath 
creating gmxcheck
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o luck luck.o libgmxpreprocess_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -o .libs/luck luck.o  ./.libs/libgmxpreprocess_mpi_d.a -lgslcblas -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath 
creating luck
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o pdb2gmx pdb2gmx.o libgmxpreprocess_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -o .libs/pdb2gmx pdb2gmx.o  ./.libs/libgmxpreprocess_mpi_d.a -lgslcblas -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath 
creating pdb2gmx
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o x2top x2top.o nm2type.o libgmxpreprocess_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -o .libs/x2top x2top.o nm2type.o  ./.libs/libgmxpreprocess_mpi_d.a -lgslcblas -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath 
creating x2top
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o gmxdump gmxdump.o libgmxpreprocess_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -o .libs/gmxdump gmxdump.o  ./.libs/libgmxpreprocess_mpi_d.a -lgslcblas -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath 
creating gmxdump
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o md.o ../../../src/kernel/md.c
../../../src/kernel/md.c: In function 'mdrunner':
../../../src/kernel/md.c:140:15: warning: unused variable 'gro' [-Wunused-variable]
   char       *gro;
               ^~~
../../../src/kernel/md.c:139:45: warning: unused variable 'nalloc' [-Wunused-variable]
   int        i,m,nChargePerturbed=-1,status,nalloc;
                                             ^~~~~~
../../../src/kernel/md.c:139:16: warning: unused variable 'm' [-Wunused-variable]
   int        i,m,nChargePerturbed=-1,status,nalloc;
                ^
../../../src/kernel/md.c:139:14: warning: unused variable 'i' [-Wunused-variable]
   int        i,m,nChargePerturbed=-1,status,nalloc;
              ^
../../../src/kernel/md.c:128:20: warning: unused variable 'tmpr2' [-Wunused-variable]
   real       tmpr1,tmpr2;
                    ^~~~~
../../../src/kernel/md.c:128:14: warning: unused variable 'tmpr1' [-Wunused-variable]
   real       tmpr1,tmpr2;
              ^~~~~
../../../src/kernel/md.c: In function 'do_md':
../../../src/kernel/md.c:533:16: warning: unused variable 'grpname' [-Wunused-variable]
   char        *grpname;
                ^~~~~~~
../../../src/kernel/md.c:525:15: warning: unused variable 'timestep' [-Wunused-variable]
   real        timestep=0;
               ^~~~~~~~
In file included from ../../../include/pppm.h:46,
                 from ../../../src/kernel/md.c:69:
At top level:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/md.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/md.c:45:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/md.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o mdrun glaasje.o gctio.o ionize.o do_gct.o repl_ex.o xutils.o md.o mdrun.o genalg.o libgmxpreprocess_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -o .libs/mdrun glaasje.o gctio.o ionize.o do_gct.o repl_ex.o xutils.o md.o mdrun.o genalg.o  ./.libs/libgmxpreprocess_mpi_d.a -lgslcblas -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath 
creating mdrun
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
Making all in tools
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o polynomials.lo ../../../src/tools/polynomials.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/polynomials.c  -fPIC -DPIC -o .libs/polynomials.o
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/polynomials.c:44:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o levenmar.lo ../../../src/tools/levenmar.c
mkdir .libs
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/levenmar.c  -fPIC -DPIC -o .libs/levenmar.o
../../../src/tools/levenmar.c:224:13: warning: 'free_convert_matrix' defined but not used [-Wunused-function]
 static void free_convert_matrix(real **b, int nrl)
             ^~~~~~~~~~~~~~~~~~~
../../../src/tools/levenmar.c:208:15: warning: 'convert_matrix' defined but not used [-Wunused-function]
 static real **convert_matrix(real *a, int nrl, int nrh, int ncl, int nch)
               ^~~~~~~~~~~~~~
../../../src/tools/levenmar.c:201:13: warning: 'free_submatrix' defined but not used [-Wunused-function]
 static void free_submatrix(real **b, int nrl)
             ^~~~~~~~~~~~~~
../../../src/tools/levenmar.c:191:13: warning: 'free_imatrix' defined but not used [-Wunused-function]
 static void free_imatrix(int **m, int nrl, int nrh, int ncl)
             ^~~~~~~~~~~~
../../../src/tools/levenmar.c:183:13: warning: 'free_dmatrix' defined but not used [-Wunused-function]
 static void free_dmatrix(double **m, int nrl, int nrh, int ncl)
             ^~~~~~~~~~~~
../../../src/tools/levenmar.c:168:13: warning: 'free_dvector' defined but not used [-Wunused-function]
 static void free_dvector(int *v, int nl)
             ^~~~~~~~~~~~
../../../src/tools/levenmar.c:141:15: warning: 'submatrix' defined but not used [-Wunused-function]
 static real **submatrix(real **a, int oldrl, int oldrh, int oldcl,
               ^~~~~~~~~
../../../src/tools/levenmar.c:123:14: warning: 'imatrix1' defined but not used [-Wunused-function]
 static int **imatrix1(int nrl, int nrh, int ncl, int nch)
              ^~~~~~~~
../../../src/tools/levenmar.c:106:17: warning: 'dmatrix' defined but not used [-Wunused-function]
 static double **dmatrix(int nrl, int nrh, int ncl, int nch)
                 ^~~~~~~
../../../src/tools/levenmar.c:78:16: warning: 'dvector' defined but not used [-Wunused-function]
 static double *dvector(int nl, int nh)
                ^~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o do_dssp.o ../../../src/tools/do_dssp.c
../../../src/tools/do_dssp.c: In function 'main':
../../../src/tools/do_dssp.c:347:16: warning: unused variable 'j' [-Wunused-variable]
   int        i,j,natoms,nframe=0;
                ^
In file included from ../../../src/tools/do_dssp.c:49:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/tools/do_dssp.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/do_dssp.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o pp2shift.lo ../../../src/tools/pp2shift.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/pp2shift.c  -fPIC -DPIC -o .libs/pp2shift.o
In file included from ../../../src/tools/pp2shift.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/pp2shift.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o eigio.lo ../../../src/tools/eigio.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/eigio.c  -fPIC -DPIC -o .libs/eigio.o
In file included from ../../../src/tools/eigio.c:41:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/eigio.c:41:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o anadih.lo ../../../src/tools/anadih.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/anadih.c  -fPIC -DPIC -o .libs/anadih.o
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/anadih.c:51:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/anadih.c:50:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/anadih.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o cmat.lo ../../../src/tools/cmat.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/cmat.c  -fPIC -DPIC -o .libs/cmat.o
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o eigensolver.lo ../../../src/tools/eigensolver.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/eigensolver.c  -fPIC -DPIC -o .libs/eigensolver.o
../../../src/tools/eigensolver.c: In function 'eigensolver':
../../../src/tools/eigensolver.c:65:16: warning: unused variable 'iu' [-Wunused-variable]
     int     il,iu,m,iw0,info;
                ^~
../../../src/tools/eigensolver.c:65:13: warning: unused variable 'il' [-Wunused-variable]
     int     il,iu,m,iw0,info;
             ^~
../../../src/tools/eigensolver.c: In function 'sparse_eigensolver':
../../../src/tools/eigensolver.c:296:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
     for(i=0;i<11;i++)
     ^~~
../../../src/tools/eigensolver.c:299:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
  iparam[0] = 1;       /* Don't use explicit shifts */
  ^~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dlist.lo ../../../src/tools/dlist.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/dlist.c  -fPIC -DPIC -o .libs/dlist.o
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/dlist.c:44:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o lsq.lo ../../../src/tools/lsq.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/lsq.c  -fPIC -DPIC -o .libs/lsq.o
In file included from ../../../src/tools/lsq.c:42:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/lsq.c:42:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/lsq.c:41:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o fitahx.lo ../../../src/tools/fitahx.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/fitahx.c  -fPIC -DPIC -o .libs/fitahx.o
In file included from ../../../src/tools/fitahx.c:41:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/fitahx.c:41:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o hxprops.lo ../../../src/tools/hxprops.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/hxprops.c  -fPIC -DPIC -o .libs/hxprops.o
../../../src/tools/hxprops.c: In function 'ellipticity':
../../../src/tools/hxprops.c:85:14: warning: unused variable 'Xi' [-Wunused-variable]
   const real Xi=1.0;
              ^~
In file included from ../../../src/tools/hxprops.c:46:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/hxprops.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o expfit.lo ../../../src/tools/expfit.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/expfit.c  -fPIC -DPIC -o .libs/expfit.o
In file included from ../../../src/tools/expfit.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/expfit.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/expfit.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o autocorr.lo ../../../src/tools/autocorr.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/autocorr.c  -fPIC -DPIC -o .libs/autocorr.o
In file included from ../../../include/gmx_fft.h:41,
                 from ../../../src/tools/correl.h:40,
                 from ../../../src/tools/autocorr.c:53:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/tools/autocorr.c:51:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/autocorr.c:51:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/autocorr.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_angle.lo ../../../src/tools/gmx_angle.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_angle.c  -fPIC -DPIC -o .libs/gmx_angle.o
../../../src/tools/gmx_angle.c: In function 'gmx_angle':
../../../src/tools/gmx_angle.c:147:14: warning: unused variable 'buf' [-Wunused-variable]
   char       buf[80];
              ^~~
../../../src/tools/gmx_angle.c:143:38: warning: unused variable 'fraction' [-Wunused-variable]
   real       t,aa,aver,aver2,aversig,fraction;       /* fraction trans dihedrals */
                                      ^~~~~~~~
../../../src/tools/gmx_angle.c:143:16: warning: unused variable 'aa' [-Wunused-variable]
   real       t,aa,aver,aver2,aversig,fraction;       /* fraction trans dihedrals */
                ^~
../../../src/tools/gmx_angle.c:143:14: warning: unused variable 't' [-Wunused-variable]
   real       t,aa,aver,aver2,aversig,fraction;       /* fraction trans dihedrals */
              ^
../../../src/tools/gmx_angle.c:138:55: warning: unused variable 'angind' [-Wunused-variable]
   int        i,j,total,nangles,natoms,nat2,first,last,angind;
                                                       ^~~~~~
../../../src/tools/gmx_angle.c:138:39: warning: unused variable 'nat2' [-Wunused-variable]
   int        i,j,total,nangles,natoms,nat2,first,last,angind;
                                       ^~~~
../../../src/tools/gmx_angle.c:138:32: warning: unused variable 'natoms' [-Wunused-variable]
   int        i,j,total,nangles,natoms,nat2,first,last,angind;
                                ^~~~~~
../../../src/tools/gmx_angle.c:138:18: warning: unused variable 'total' [-Wunused-variable]
   int        i,j,total,nangles,natoms,nat2,first,last,angind;
                  ^~~~~
../../../src/tools/gmx_angle.c:135:21: warning: unused variable 'Jc' [-Wunused-variable]
   real       maxang,Jc,S2,norm_fac,maxstat;
                     ^~
../../../src/tools/gmx_angle.c:132:14: warning: unused variable 'status' [-Wunused-variable]
   int        status,isize;
              ^~~~~~
../../../src/tools/gmx_angle.c:131:14: warning: unused variable 'tmp' [-Wunused-variable]
   real       tmp,dt;
              ^~~
In file included from ../../../src/tools/gmx_angle.c:49:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_angle.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_angle.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_angle.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_bond.lo ../../../src/tools/gmx_bond.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_bond.c  -fPIC -DPIC -o .libs/gmx_bond.o
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_bond.c:51:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_bond.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_bond.c:45:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_bond.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_bundle.lo ../../../src/tools/gmx_bundle.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_bundle.c  -fPIC -DPIC -o .libs/gmx_bundle.o
../../../src/tools/gmx_bundle.c: In function 'dump_axes':
../../../src/tools/gmx_bundle.c:141:17: warning: unused variable 'end' [-Wunused-variable]
   int         i,end;
                 ^~~
../../../src/tools/gmx_bundle.c: In function 'gmx_bundle':
../../../src/tools/gmx_bundle.c:210:16: warning: unused variable 'j' [-Wunused-variable]
   int        i,j,gnx[MAX_ENDS];
                ^
../../../src/tools/gmx_bundle.c:208:14: warning: unused variable 'natoms' [-Wunused-variable]
   int        natoms;
              ^~~~~~
../../../src/tools/gmx_bundle.c:198:15: warning: unused variable 'out' [-Wunused-variable]
   FILE       *out,*flen,*fdist,*fz,*ftilt,*ftiltr,*ftiltl;
               ^~~
In file included from ../../../src/tools/gmx_bundle.c:48:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_bundle.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_bundle.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_bundle.c:42:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_analyze.lo ../../../src/tools/gmx_analyze.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_analyze.c  -fPIC -DPIC -o .libs/gmx_analyze.o
../../../src/tools/gmx_analyze.c: In function 'luzar_correl':
../../../src/tools/gmx_analyze.c:514:8: warning: unused variable 'weight' [-Wunused-variable]
   real weight,d2;
        ^~~~~~
../../../src/tools/gmx_analyze.c:512:14: warning: unused variable 'tol' [-Wunused-variable]
   const real tol = 1e-8;
              ^~~
../../../src/tools/gmx_analyze.c: In function 'gmx_analyze':
../../../src/tools/gmx_analyze.c:744:63: warning: unused variable 'bLuzarError' [-Wunused-variable]
   static bool bIntegrate=FALSE,bRegression=FALSE,bLuzar=FALSE,bLuzarError=FALSE;
                                                               ^~~~~~~~~~~
At top level:
../../../src/tools/gmx_analyze.c:744:63: warning: 'bLuzarError' defined but not used [-Wunused-variable]
../../../src/tools/gmx_analyze.c:273:13: warning: 'anal_ee' defined but not used [-Wunused-function]
 static real anal_ee(real *parm,real T,real t)
             ^~~~~~~
In file included from ../../../src/tools/gmx_analyze.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_analyze.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_analyze.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_analyze.c:41:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nsc.lo ../../../src/tools/nsc.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/nsc.c  -fPIC -DPIC -o .libs/nsc.o
../../../src/tools/nsc.c: In function 'make_unsp':
../../../src/tools/nsc.c:446:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
   if (xpunsp) free(xpunsp); if (ico_wk) free(ico_wk);
   ^~
../../../src/tools/nsc.c:446:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
   if (xpunsp) free(xpunsp); if (ico_wk) free(ico_wk);
                             ^~
../../../src/tools/nsc.c: In function 'nsc_dclm_pbc':
../../../src/tools/nsc.c:652:21: warning: unused variable 'm' [-Wunused-variable]
     int    ix,iy,iz,m;
                     ^
../../../src/tools/nsc.c:551:16: warning: unused variable 'jat_xx' [-Wunused-variable]
   int   iat_xx,jat_xx;
                ^~~~~~
In file included from ../../../src/tools/nsc.c:48:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/nsc.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_covar.lo ../../../src/tools/gmx_covar.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_covar.c  -fPIC -DPIC -o .libs/gmx_covar.o
../../../src/tools/gmx_covar.c: In function 'gmx_covar':
../../../src/tools/gmx_covar.c:120:30: warning: unused variable 'count' [-Wunused-variable]
   int        natoms,nat,ndim,count,nframes0,nframes,nlevels;
                              ^~~~~
../../../src/tools/gmx_covar.c:119:24: warning: unused variable 'step' [-Wunused-variable]
   int        ntopatoms,step;
                        ^~~~
../../../src/tools/gmx_covar.c:119:14: warning: unused variable 'ntopatoms' [-Wunused-variable]
   int        ntopatoms,step;
              ^~~~~~~~~
../../../src/tools/gmx_covar.c:109:21: warning: unused variable 'trjout' [-Wunused-variable]
   int        status,trjout;
                     ^~~~~~
In file included from ../../../src/tools/gmx_covar.c:50:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_covar.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_covar.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_covar.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_densmap.lo ../../../src/tools/gmx_densmap.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_densmap.c  -fPIC -DPIC -o .libs/gmx_densmap.o
In file included from ../../../src/tools/gmx_densmap.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_densmap.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_densmap.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_densmap.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_confrms.lo ../../../src/tools/gmx_confrms.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_confrms.c  -fPIC -DPIC -o .libs/gmx_confrms.o
../../../src/tools/gmx_confrms.c: In function 'find_matching_names':
../../../src/tools/gmx_confrms.c:252:35: warning: unused variable 'atnm2' [-Wunused-variable]
   char *resnm1, *resnm2, *atnm1, *atnm2;
                                   ^~~~~
../../../src/tools/gmx_confrms.c:252:27: warning: unused variable 'atnm1' [-Wunused-variable]
   char *resnm1, *resnm2, *atnm1, *atnm2;
                           ^~~~~
../../../src/tools/gmx_confrms.c:252:18: warning: unused variable 'resnm2' [-Wunused-variable]
   char *resnm1, *resnm2, *atnm1, *atnm2;
                  ^~~~~~
../../../src/tools/gmx_confrms.c:252:9: warning: unused variable 'resnm1' [-Wunused-variable]
   char *resnm1, *resnm2, *atnm1, *atnm2;
         ^~~~~~
../../../src/tools/gmx_confrms.c:249:7: warning: unused variable 'r' [-Wunused-variable]
   int r,rnr1, rnr2, prnr1, prnr2;
       ^
../../../src/tools/gmx_confrms.c:247:7: warning: unused variable 'i' [-Wunused-variable]
   int i, i1, i2, ii1, ii2, m1, m2;
       ^
../../../src/tools/gmx_confrms.c: In function 'gmx_confrms':
../../../src/tools/gmx_confrms.c:407:17: warning: unused variable 'tmas2' [-Wunused-variable]
   real    tmas1,tmas2;
                 ^~~~~
../../../src/tools/gmx_confrms.c:407:11: warning: unused variable 'tmas1' [-Wunused-variable]
   real    tmas1,tmas2;
           ^~~~~
../../../src/tools/gmx_confrms.c:404:13: warning: unused variable 'j' [-Wunused-variable]
   int     i,j,m;
             ^
In file included from ../../../src/tools/gmx_confrms.c:56:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/tools/gmx_confrms.c:50:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_confrms.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_confrms.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_confrms.c:46:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_density.lo ../../../src/tools/gmx_density.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_density.c  -fPIC -DPIC -o .libs/gmx_density.o
../../../src/tools/gmx_density.c: In function 'calc_density':
../../../src/tools/gmx_density.c:261:9: warning: unused variable 'buf' [-Wunused-variable]
   char *buf;             /* for tmp. keeping atomname */
         ^~~
../../../src/tools/gmx_density.c:254:9: warning: unused variable 'j' [-Wunused-variable]
       i,j,n,               /* loop indices */
         ^
../../../src/tools/gmx_density.c:253:9: warning: unused variable 'slCount' [-Wunused-variable]
       **slCount,         /* nr. of atoms in one slice for a group */
         ^~~~~~~
In file included from ../../../src/tools/gmx_density.c:52:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_density.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_density.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/gmx_density.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_dih.lo ../../../src/tools/gmx_dih.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_dih.c  -fPIC -DPIC -o .libs/gmx_dih.o
../../../src/tools/gmx_dih.c:55:13: warning: 'dump_dih' defined but not used [-Wunused-function]
 static void dump_dih(int nframes,char *title,real time[],real dih[])
             ^~~~~~~~
In file included from ../../../src/tools/gmx_dih.c:51:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_dih.c:51:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_dih.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_dih.c:43:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
../../../src/tools/gmx_dih.c: In function 'gmx_dih':
../../../src/tools/gmx_dih.c:265:22: warning: '%d' directive writing between 1 and 10 bytes into a region of size 6 [-Wformat-overflow=]
     sprintf(buf,"dih-%d",i);
                      ^~
../../../src/tools/gmx_dih.c:265:17: note: directive argument in the range [0, 1073741823]
     sprintf(buf,"dih-%d",i);
                 ^~~~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/tools/gmx_dih.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 6 and 15 bytes into a destination of size 10
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_anaeig.lo ../../../src/tools/gmx_anaeig.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_anaeig.c  -fPIC -DPIC -o .libs/gmx_anaeig.o
../../../src/tools/gmx_anaeig.c: In function 'calc_entropy_schlitter':
../../../src/tools/gmx_anaeig.c:98:10: warning: unused variable 'buf' [-Wunused-variable]
   char   buf[256];
          ^~~
../../../src/tools/gmx_anaeig.c:97:16: warning: unused variable 'm' [-Wunused-variable]
   int    i,j,k,m;
                ^
../../../src/tools/gmx_anaeig.c:97:14: warning: unused variable 'k' [-Wunused-variable]
   int    i,j,k,m;
              ^
../../../src/tools/gmx_anaeig.c:97:12: warning: unused variable 'j' [-Wunused-variable]
   int    i,j,k,m;
            ^
../../../src/tools/gmx_anaeig.c:96:11: warning: unused variable 'indx' [-Wunused-variable]
   int    *indx;
           ^~~~
../../../src/tools/gmx_anaeig.c: In function 'compare':
../../../src/tools/gmx_anaeig.c:224:12: warning: unused variable 'nrow' [-Wunused-variable]
   int    n,nrow;
            ^~~~
../../../src/tools/gmx_anaeig.c: In function 'rmsf':
../../../src/tools/gmx_anaeig.c:692:9: warning: unused variable 'nrow' [-Wunused-variable]
   int   nrow,g,v,i;
         ^~~~
../../../src/tools/gmx_anaeig.c: In function 'gmx_anaeig':
../../../src/tools/gmx_anaeig.c:1015:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
     if (i!=natoms)
     ^~
../../../src/tools/gmx_anaeig.c:1017:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
       printf("\n");
       ^~~~~~
../../../src/tools/gmx_anaeig.c:835:21: warning: unused variable 'step' [-Wunused-variable]
   int        natoms,step;
                     ^~~~
../../../src/tools/gmx_anaeig.c:834:42: warning: unused variable 'lambda' [-Wunused-variable]
   real       xid,totmass,*sqrtm,*w_rls,t,lambda;
                                          ^~~~~~
../../../src/tools/gmx_anaeig.c:834:14: warning: unused variable 'xid' [-Wunused-variable]
   real       xid,totmass,*sqrtm,*w_rls,t,lambda;
              ^~~
../../../src/tools/gmx_anaeig.c:832:18: warning: unused variable 'xread' [-Wunused-variable]
   rvec       *x,*xread,*xav1,*xav2,**eigvec1=NULL,**eigvec2=NULL;
                  ^~~~~
../../../src/tools/gmx_anaeig.c:832:15: warning: unused variable 'x' [-Wunused-variable]
   rvec       *x,*xread,*xav1,*xav2,**eigvec1=NULL,**eigvec2=NULL;
               ^
../../../src/tools/gmx_anaeig.c:825:21: warning: unused variable 'trjout' [-Wunused-variable]
   int        status,trjout;
                     ^~~~~~
../../../src/tools/gmx_anaeig.c:825:14: warning: unused variable 'status' [-Wunused-variable]
   int        status,trjout;
              ^~~~~~
../../../src/tools/gmx_anaeig.c:824:15: warning: unused variable 'out' [-Wunused-variable]
   FILE       *out;
               ^~~
In file included from ../../../src/tools/gmx_anaeig.c:53:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
In file included from ../../../src/tools/gmx_anaeig.c:49:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_anaeig.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_anaeig.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_anaeig.c:41:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_current.lo ../../../src/tools/gmx_current.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_current.c  -fPIC -DPIC -o .libs/gmx_current.o
../../../src/tools/gmx_current.c: In function 'calc_mjdsp':
../../../src/tools/gmx_current.c:266:7: warning: unused variable 'rfr' [-Wunused-variable]
  real rfr;
       ^~~
../../../src/tools/gmx_current.c:265:8: warning: unused variable 'rtmp' [-Wunused-variable]
  real  rtmp;
        ^~~~
../../../src/tools/gmx_current.c: In function 'dielectric':
../../../src/tools/gmx_current.c:338:8: warning: variable 'rest' set but not used [-Wunused-but-set-variable]
   real rest=0.0;
        ^~~~
../../../src/tools/gmx_current.c:326:8: warning: unused variable 'qtmp' [-Wunused-variable]
   real qtmp;
        ^~~~
../../../src/tools/gmx_current.c:308:13: warning: unused variable 'dm_d' [-Wunused-variable]
   real dm_s,dm_d;
             ^~~~
../../../src/tools/gmx_current.c:308:8: warning: unused variable 'dm_s' [-Wunused-variable]
   real dm_s,dm_d;
        ^~~~
../../../src/tools/gmx_current.c:298:8: warning: unused variable 'rfr' [-Wunused-variable]
   real rfr=0.0;
        ^~~
../../../src/tools/gmx_current.c:293:33: warning: variable 'itrust' set but not used [-Wunused-but-set-variable]
   int  valloc,nalloc,nfr,nvfr,m,itrust=0;
                                 ^~~~~~
../../../src/tools/gmx_current.c:293:31: warning: unused variable 'm' [-Wunused-variable]
   int  valloc,nalloc,nfr,nvfr,m,itrust=0;
                               ^
../../../src/tools/gmx_current.c:292:17: warning: unused variable 'f' [-Wunused-variable]
   int   i,j,k,l,f;
                 ^
../../../src/tools/gmx_current.c:292:15: warning: unused variable 'l' [-Wunused-variable]
   int   i,j,k,l,f;
               ^
../../../src/tools/gmx_current.c:292:13: warning: unused variable 'k' [-Wunused-variable]
   int   i,j,k,l,f;
             ^
../../../src/tools/gmx_current.c: In function 'gmx_current':
../../../src/tools/gmx_current.c:720:15: warning: unused variable 'tfile' [-Wunused-variable]
   FILE       *tfile=NULL;
               ^~~~~
../../../src/tools/gmx_current.c:719:15: warning: unused variable 'outi' [-Wunused-variable]
   FILE       *outi=NULL;
               ^~~~
../../../src/tools/gmx_current.c:716:14: warning: unused variable 'lambda' [-Wunused-variable]
   real       lambda;
              ^~~~~~
../../../src/tools/gmx_current.c:715:13: warning: unused variable 't' [-Wunused-variable]
   real      t;
             ^
../../../src/tools/gmx_current.c:714:14: warning: unused variable 'step' [-Wunused-variable]
   int        step;
              ^~~~
../../../src/tools/gmx_current.c:713:21: warning: unused variable 'l' [-Wunused-variable]
   int       i,j,k=0,l;
                     ^
../../../src/tools/gmx_current.c:713:17: warning: unused variable 'k' [-Wunused-variable]
   int       i,j,k=0,l;
                 ^
../../../src/tools/gmx_current.c:713:15: warning: unused variable 'j' [-Wunused-variable]
   int       i,j,k=0,l;
               ^
../../../src/tools/gmx_current.c:711:12: warning: unused variable 'natoms' [-Wunused-variable]
   int      natoms;
            ^~~~~~
../../../src/tools/gmx_current.c:707:10: warning: variable 'bNEU' set but not used [-Wunused-but-set-variable]
   bool   bNEU;
          ^~~~
../../../src/tools/gmx_current.c:706:13: warning: variable 'bTop' set but not used [-Wunused-but-set-variable]
   bool      bTop;
             ^~~~
In file included from ../../../src/tools/gmx_current.c:44:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_current.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_current.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_current.c:40:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_chi.lo ../../../src/tools/gmx_chi.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_chi.c  -fPIC -DPIC -o .libs/gmx_chi.o
../../../src/tools/gmx_chi.c: In function 'histogramming':
../../../src/tools/gmx_chi.c:418:23: warning: unused variable 'his_aa1' [-Wunused-variable]
   int     ***his_aa,**his_aa1,*histmp;
                       ^~~~~~~
../../../src/tools/gmx_chi.c: In function 'print_transitions':
../../../src/tools/gmx_chi.c:834:8: warning: variable 'nh' set but not used [-Wunused-but-set-variable]
   int  nh[edMax];
        ^~
../../../src/tools/gmx_chi.c: In function 'gmx_chi':
../../../src/tools/gmx_chi.c:1098:16: warning: unused variable 'j' [-Wunused-variable]
   int        i,j,**chi_lookup,*xity;
                ^
In file included from ../../../src/tools/gmx_chi.c:59:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/tools/gmx_chi.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/gmx_chi.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_chi.c:44:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_chi.c:43:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../src/tools/gmx_chi.c: In function 'histogramming.isra.1':
../../../src/tools/gmx_chi.c:657:30: warning: '.xvg' directive writing 4 bytes into a region of size between 0 and 255 [-Wformat-overflow=]
      sprintf(sshisfile,"%s-%s.xvg",hisfile,sss[k]);
                              ^~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../src/tools/gmx_chi.c:39:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 6 or more bytes (assuming 261) into a destination of size 256
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_dielectric.lo ../../../src/tools/gmx_dielectric.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_dielectric.c  -fPIC -DPIC -o .libs/gmx_dielectric.o
../../../src/tools/gmx_dielectric.c: In function 'calc_nbegin':
../../../src/tools/gmx_dielectric.c:60:11: warning: unused variable 'dtt' [-Wunused-variable]
   real dt,dtt;
           ^~~
../../../src/tools/gmx_dielectric.c:60:8: warning: unused variable 'dt' [-Wunused-variable]
   real dt,dtt;
        ^~
In file included from ../../../src/tools/gmx_dielectric.c:53:
At top level:
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/tools/gmx_dielectric.c:51:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/gmx_dielectric.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_dielectric.c:44:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_spatial.lo ../../../src/tools/gmx_spatial.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_spatial.c  -fPIC -DPIC -o .libs/gmx_spatial.o
../../../src/tools/gmx_spatial.c: In function 'gmx_spatial':
../../../src/tools/gmx_spatial.c:131:21: warning: unused variable 'shx' [-Wunused-variable]
   rvec       *xtop,*shx[26];
                     ^~~
../../../src/tools/gmx_spatial.c:103:15: warning: unused variable 'bSHIFT' [-Wunused-variable]
   static bool bSHIFT=FALSE;
               ^~~~~~
At top level:
../../../src/tools/gmx_spatial.c:103:15: warning: 'bSHIFT' defined but not used [-Wunused-variable]
In file included from ../../../src/tools/gmx_spatial.c:44:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_spatial.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_spatial.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_spatial.c:40:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
../../../src/tools/gmx_spatial.c:38:14: warning: 'SRCID_template_c' defined but not used [-Wunused-variable]
 static char *SRCID_template_c = "$Id$";
              ^~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_dyndom.lo ../../../src/tools/gmx_dyndom.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_dyndom.c  -fPIC -DPIC -o .libs/gmx_dyndom.o
../../../src/tools/gmx_dyndom.c: In function 'rot_conf':
../../../src/tools/gmx_dyndom.c:60:14: warning: unused variable 'j' [-Wunused-variable]
   int      i,j,ai;
              ^
../../../src/tools/gmx_dyndom.c:58:43: warning: unused variable 'temp43' [-Wunused-variable]
   mat4     temp1,temp2,temp3,temp4,temp21,temp43;
                                           ^~~~~~
../../../src/tools/gmx_dyndom.c:58:36: warning: unused variable 'temp21' [-Wunused-variable]
   mat4     temp1,temp2,temp3,temp4,temp21,temp43;
                                    ^~~~~~
../../../src/tools/gmx_dyndom.c:58:30: warning: unused variable 'temp4' [-Wunused-variable]
   mat4     temp1,temp2,temp3,temp4,temp21,temp43;
                              ^~~~~
../../../src/tools/gmx_dyndom.c:57:49: warning: unused variable 'Tx' [-Wunused-variable]
   mat4     Rx,Ry,Rz,Rinvy,Rinvz,Mtot,Tcm,Tinvcm,Tx;
                                                 ^~
../../../src/tools/gmx_dyndom.c:57:42: warning: unused variable 'Tinvcm' [-Wunused-variable]
   mat4     Rx,Ry,Rz,Rinvy,Rinvz,Mtot,Tcm,Tinvcm,Tx;
                                          ^~~~~~
../../../src/tools/gmx_dyndom.c:57:38: warning: unused variable 'Tcm' [-Wunused-variable]
   mat4     Rx,Ry,Rz,Rinvy,Rinvz,Mtot,Tcm,Tinvcm,Tx;
                                      ^~~
../../../src/tools/gmx_dyndom.c:55:18: warning: unused variable 'center' [-Wunused-variable]
   rvec     arrow,center,xcm;
                  ^~~~~~
In file included from ../../../src/tools/gmx_dyndom.c:47:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_dyndom.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_dyndom.c:43:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_dyndom.c:41:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_kinetics.lo ../../../src/tools/gmx_kinetics.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_kinetics.c  -fPIC -DPIC -o .libs/gmx_kinetics.o
../../../src/tools/gmx_kinetics.c: In function 'epnm':
../../../src/tools/gmx_kinetics.c:96:16: warning: unused variable 'ii' [-Wunused-variable]
   int    nn,ni,ii;
                ^~
../../../src/tools/gmx_kinetics.c:96:13: warning: unused variable 'ni' [-Wunused-variable]
   int    nn,ni,ii;
             ^~
../../../src/tools/gmx_kinetics.c:96:10: warning: unused variable 'nn' [-Wunused-variable]
   int    nn,ni,ii;
          ^~
../../../src/tools/gmx_kinetics.c:95:31: warning: unused variable 'to' [-Wunused-variable]
   static char buf[32],from[8],to[8];
                               ^~
../../../src/tools/gmx_kinetics.c:95:23: warning: unused variable 'from' [-Wunused-variable]
   static char buf[32],from[8],to[8];
                       ^~~~
../../../src/tools/gmx_kinetics.c:95:15: warning: unused variable 'buf' [-Wunused-variable]
   static char buf[32],from[8],to[8];
               ^~~
../../../src/tools/gmx_kinetics.c: In function 'dump_remd_parameters':
../../../src/tools/gmx_kinetics.c:559:8: warning: unused variable 'rhs' [-Wunused-variable]
   real rhs,tauf,taub,fff,DG;
        ^~~
At top level:
../../../src/tools/gmx_kinetics.c:95:15: warning: 'buf' defined but not used [-Wunused-variable]
   static char buf[32],from[8],to[8];
               ^~~
../../../src/tools/gmx_kinetics.c:95:23: warning: 'from' defined but not used [-Wunused-variable]
   static char buf[32],from[8],to[8];
                       ^~~~
../../../src/tools/gmx_kinetics.c:95:31: warning: 'to' defined but not used [-Wunused-variable]
   static char buf[32],from[8],to[8];
                               ^~
../../../src/tools/gmx_kinetics.c:85:14: warning: 'itoa' defined but not used [-Wunused-function]
 static char *itoa(int i)
              ^~~~
In file included from ../../../src/tools/gmx_kinetics.c:49:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_kinetics.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_kinetics.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_kinetics.c:42:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_dist.lo ../../../src/tools/gmx_dist.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_dist.c  -fPIC -DPIC -o .libs/gmx_dist.o
../../../src/tools/gmx_dist.c: In function 'gmx_dist':
../../../src/tools/gmx_dist.c:101:21: warning: unused variable 'fplt' [-Wunused-variable]
   FILE    *fp=NULL,*fplt=NULL;
                     ^~~~
../../../src/tools/gmx_dist.c:93:11: warning: unused variable 'aid' [-Wunused-variable]
   atom_id aid;
           ^~~
../../../src/tools/gmx_dist.c:87:17: warning: unused variable 'v' [-Wunused-variable]
   rvec *x=NULL,*v=NULL,dx;
                 ^
In file included from ../../../src/tools/gmx_dist.c:48:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_dist.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_dist.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_dist.c:45:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_cluster.lo ../../../src/tools/gmx_cluster.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_cluster.c  -fPIC -DPIC -o .libs/gmx_cluster.o
../../../src/tools/gmx_cluster.c: In function 'mark_clusters':
../../../src/tools/gmx_cluster.c:638:11: warning: unused variable 'v' [-Wunused-variable]
   int i,j,v;
           ^
../../../src/tools/gmx_cluster.c: In function 'gmx_cluster':
../../../src/tools/gmx_cluster.c:1341:7: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
       for(i=0; (i<nf); i++)
       ^~~
../../../src/tools/gmx_cluster.c:1343:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
           ffclose(fp);
           ^~~~~~~
In file included from ../../../src/tools/gmx_cluster.c:49:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_cluster.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_cluster.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_cluster.c:45:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_enemat.lo ../../../src/tools/gmx_enemat.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_enemat.c  -fPIC -DPIC -o .libs/gmx_enemat.o
In file included from ../../../src/tools/gmx_enemat.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_enemat.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_enemat.c:45:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_enemat.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_lie.lo ../../../src/tools/gmx_lie.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_lie.c  -fPIC -DPIC -o .libs/gmx_lie.o
In file included from ../../../src/tools/gmx_lie.c:52:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_lie.c:51:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_lie.c:51:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_lie.c:45:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_gyrate.lo ../../../src/tools/gmx_gyrate.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_gyrate.c  -fPIC -DPIC -o .libs/gmx_gyrate.o
../../../src/tools/gmx_gyrate.c: In function 'gmx_gyrate':
../../../src/tools/gmx_gyrate.c:190:14: warning: unused variable 'i' [-Wunused-variable]
   int        i,j,m,gnx,nam,mol;
              ^
In file included from ../../../src/tools/gmx_gyrate.c:50:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_gyrate.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_gyrate.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_gyrate.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_disre.lo ../../../src/tools/gmx_disre.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_disre.c  -fPIC -DPIC -o .libs/gmx_disre.o
../../../src/tools/gmx_disre.c: In function 'check_viol':
../../../src/tools/gmx_disre.c:144:11: warning: variable 'ener' set but not used [-Wunused-but-set-variable]
   real    ener,rt,mviol,tviol,viol,lam,dvdl,drt;
           ^~~~
../../../src/tools/gmx_disre.c: In function 'dump_disre_matrix':
../../../src/tools/gmx_disre.c:449:12: warning: unused variable 'iii' [-Wunused-variable]
   int      iii,i,j,nra,nratoms,tp,ri,rj,index,nlabel,label;
            ^~~
In file included from ../../../src/tools/gmx_disre.c:57:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/tools/gmx_disre.c:54:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_disre.c:53:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_disre.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_disre.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_disre.c:44:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_h2order.lo ../../../src/tools/gmx_h2order.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_h2order.c  -fPIC -DPIC -o .libs/gmx_h2order.o
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_h2order.c:54:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_h2order.c:52:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_h2order.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_h2order.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_filter.lo ../../../src/tools/gmx_filter.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_filter.c  -fPIC -DPIC -o .libs/gmx_filter.o
In file included from ../../../src/tools/gmx_filter.c:53:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_filter.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_filter.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_filter.c:42:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_helix.lo ../../../src/tools/gmx_helix.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_helix.c  -fPIC -DPIC -o .libs/gmx_helix.o
../../../src/tools/gmx_helix.c: In function 'gmx_helix':
../../../src/tools/gmx_helix.c:213:21: warning: unused variable 'nre' [-Wunused-variable]
   int        natoms,nre,nres,step;
                     ^~~
In file included from ../../../src/tools/gmx_helix.c:62:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/tools/gmx_helix.c:51:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/gmx_helix.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_helix.c:43:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_morph.lo ../../../src/tools/gmx_morph.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_morph.c  -fPIC -DPIC -o .libs/gmx_morph.o
In file included from ../../../src/tools/gmx_morph.c:44:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_morph.c:40:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_dipoles.lo ../../../src/tools/gmx_dipoles.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_dipoles.c  -fPIC -DPIC -o .libs/gmx_dipoles.o
../../../src/tools/gmx_dipoles.c: In function 'do_gkr':
../../../src/tools/gmx_dipoles.c:156:17: warning: unused variable 'r2' [-Wunused-variable]
   real   qtot,q,r2,cosa,rr,phi;
                 ^~
../../../src/tools/gmx_dipoles.c:155:30: warning: unused variable 'index' [-Wunused-variable]
   int    gi,gj,j0,j1,i,j,k,n,index,grp0,grp1;
                              ^~~~~
../../../src/tools/gmx_dipoles.c: In function 'print_gkrbin':
../../../src/tools/gmx_dipoles.c:291:14: warning: unused variable 'n' [-Wunused-variable]
   int    i,j,n,last;
              ^
../../../src/tools/gmx_dipoles.c:291:12: warning: unused variable 'j' [-Wunused-variable]
   int    i,j,n,last;
            ^
../../../src/tools/gmx_dipoles.c: In function 'mol_quad':
../../../src/tools/gmx_dipoles.c:418:17: warning: unused variable 'rcom_n' [-Wunused-variable]
   real   rcom_m,rcom_n;
                 ^~~~~~
../../../src/tools/gmx_dipoles.c:418:10: warning: unused variable 'rcom_m' [-Wunused-variable]
   real   rcom_m,rcom_n;
          ^~~~~~
../../../src/tools/gmx_dipoles.c: In function 'compute_avercos':
../../../src/tools/gmx_dipoles.c:580:19: warning: unused variable 'n5' [-Wunused-variable]
   double dc,dc1,d,n5,ddc1,ddc2,ddc3;
                   ^~
../../../src/tools/gmx_dipoles.c:580:13: warning: unused variable 'dc1' [-Wunused-variable]
   double dc,dc1,d,n5,ddc1,ddc2,ddc3;
             ^~~
../../../src/tools/gmx_dipoles.c: In function 'do_dip':
../../../src/tools/gmx_dipoles.c:872:8: warning: unused variable 'gi' [-Wunused-variable]
    int gi,ind0,ind1;
        ^~
../../../src/tools/gmx_dipoles.c:675:27: warning: unused variable 'Vol' [-Wunused-variable]
   t_lsq      Mx,My,Mz,Msq,Vol;
                           ^~~
../../../src/tools/gmx_dipoles.c:675:23: warning: unused variable 'Msq' [-Wunused-variable]
   t_lsq      Mx,My,Mz,Msq,Vol;
                       ^~~
../../../src/tools/gmx_dipoles.c:675:20: warning: unused variable 'Mz' [-Wunused-variable]
   t_lsq      Mx,My,Mz,Msq,Vol;
                    ^~
../../../src/tools/gmx_dipoles.c:675:17: warning: unused variable 'My' [-Wunused-variable]
   t_lsq      Mx,My,Mz,Msq,Vol;
                 ^~
../../../src/tools/gmx_dipoles.c:675:14: warning: unused variable 'Mx' [-Wunused-variable]
   t_lsq      Mx,My,Mz,Msq,Vol;
              ^~
../../../src/tools/gmx_dipoles.c:668:32: warning: unused variable 'lambda' [-Wunused-variable]
   real       rcut=0,t,t0,t1,dt,lambda,dd,rms_cos;
                                ^~~~~~
../../../src/tools/gmx_dipoles.c:667:25: warning: unused variable 'buf' [-Wunused-variable]
   char       **enm=NULL,buf[STRLEN];
                         ^~~
../../../src/tools/gmx_dipoles.c:665:44: warning: unused variable 'step' [-Wunused-variable]
   int        *dipole_bin,ndipbin,ibin,iVol,step,idim=-1;
                                            ^~~~
../../../src/tools/gmx_dipoles.c:664:32: warning: unused variable 'nmol' [-Wunused-variable]
   int        i,j,k,n,m,natom=0,nmol,status,gnx_tot,teller,tel3;
                                ^~~~
../../../src/tools/gmx_dipoles.c:664:18: warning: unused variable 'k' [-Wunused-variable]
   int        i,j,k,n,m,natom=0,nmol,status,gnx_tot,teller,tel3;
                  ^
../../../src/tools/gmx_dipoles.c:664:16: warning: unused variable 'j' [-Wunused-variable]
   int        i,j,k,n,m,natom=0,nmol,status,gnx_tot,teller,tel3;
                ^
../../../src/tools/gmx_dipoles.c: In function 'gmx_dipoles':
../../../src/tools/gmx_dipoles.c:1271:16: warning: unused variable 'bCorr' [-Wunused-variable]
   bool         bCorr,bQuad,bGkr,bMU,bSlab;
                ^~~~~
../../../src/tools/gmx_dipoles.c:1227:31: warning: unused variable 'bMolCorr' [-Wunused-variable]
   static bool bAverCorr=FALSE,bMolCorr=FALSE,bPairs=TRUE,bPhi=FALSE;
                               ^~~~~~~~
../../../src/tools/gmx_dipoles.c:1227:15: warning: variable 'bAverCorr' set but not used [-Wunused-but-set-variable]
   static bool bAverCorr=FALSE,bMolCorr=FALSE,bPairs=TRUE,bPhi=FALSE;
               ^~~~~~~~~
At top level:
../../../src/tools/gmx_dipoles.c:1227:31: warning: 'bMolCorr' defined but not used [-Wunused-variable]
   static bool bAverCorr=FALSE,bMolCorr=FALSE,bPairs=TRUE,bPhi=FALSE;
                               ^~~~~~~~
In file included from ../../../src/tools/gmx_dipoles.c:49:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_dipoles.c:46:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_dipoles.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_dipoles.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_nmeig.lo ../../../src/tools/gmx_nmeig.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_nmeig.c  -fPIC -DPIC -o .libs/gmx_nmeig.o
../../../src/tools/gmx_nmeig.c: In function 'nma_full_hessian':
../../../src/tools/gmx_nmeig.c:76:19: warning: unused variable 'rdum' [-Wunused-variable]
     real mass_fac,rdum;
                   ^~~~
../../../src/tools/gmx_nmeig.c: In function 'gmx_nmeig':
../../../src/tools/gmx_nmeig.c:229:15: warning: unused variable 'index' [-Wunused-variable]
   atom_id    *index;
               ^~~~~
../../../src/tools/gmx_nmeig.c:227:24: warning: unused variable 'gnx' [-Wunused-variable]
   int        i,j,k,l,d,gnx;
                        ^~~
../../../src/tools/gmx_nmeig.c:227:22: warning: unused variable 'd' [-Wunused-variable]
   int        i,j,k,l,d,gnx;
                      ^
../../../src/tools/gmx_nmeig.c:227:20: warning: unused variable 'l' [-Wunused-variable]
   int        i,j,k,l,d,gnx;
                    ^
../../../src/tools/gmx_nmeig.c:226:15: warning: unused variable 'grpname' [-Wunused-variable]
   char       *grpname,title[256];
               ^~~~~~~
../../../src/tools/gmx_nmeig.c:225:36: warning: unused variable 'count' [-Wunused-variable]
   int        natoms,ndim,nrow,ncol,count;
                                    ^~~~~
../../../src/tools/gmx_nmeig.c:224:19: warning: unused variable 'mass_fac' [-Wunused-variable]
   real       rdum,mass_fac;
                   ^~~~~~~~
../../../src/tools/gmx_nmeig.c:224:14: warning: unused variable 'rdum' [-Wunused-variable]
   real       rdum,mass_fac;
              ^~~~
../../../src/tools/gmx_nmeig.c:217:21: warning: unused variable 'trjout' [-Wunused-variable]
   int        status,trjout;
                     ^~~~~~
../../../src/tools/gmx_nmeig.c:217:14: warning: unused variable 'status' [-Wunused-variable]
   int        status,trjout;
              ^~~~~~
In file included from ../../../src/tools/gmx_nmeig.c:50:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_nmeig.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_nmeig.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_nmeig.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_nmens.lo ../../../src/tools/gmx_nmens.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_nmens.c  -fPIC -DPIC -o .libs/gmx_nmens.o
../../../src/tools/gmx_nmens.c: In function 'gmx_nmens':
../../../src/tools/gmx_nmens.c:105:14: warning: unused variable 'eigvalnr' [-Wunused-variable]
   int *      eigvalnr;
              ^~~~~~~~
../../../src/tools/gmx_nmens.c:104:19: warning: unused variable 'invfr' [-Wunused-variable]
   real       rfac,invfr,rhalf,jr;
                   ^~~~~
../../../src/tools/gmx_nmens.c:99:21: warning: unused variable 'neigval' [-Wunused-variable]
   int        natoms,neigval;
                     ^~~~~~~
../../../src/tools/gmx_nmens.c:98:22: warning: unused variable 'totmass' [-Wunused-variable]
   real       *eigval,totmass,*invsqrtm,t,disp;
                      ^~~~~~~
../../../src/tools/gmx_nmens.c:89:21: warning: unused variable 'trjout' [-Wunused-variable]
   int        status,trjout;
                     ^~~~~~
../../../src/tools/gmx_nmens.c:89:14: warning: unused variable 'status' [-Wunused-variable]
   int        status,trjout;
              ^~~~~~
In file included from ../../../src/tools/gmx_nmens.c:54:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/tools/gmx_nmens.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_nmens.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_nmens.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_nmens.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_principal.lo ../../../src/tools/gmx_principal.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_principal.c  -fPIC -DPIC -o .libs/gmx_principal.o
../../../src/tools/gmx_principal.c: In function 'gmx_principal':
../../../src/tools/gmx_principal.c:97:20: warning: unused variable 'a3' [-Wunused-variable]
   rvec       a1,a2,a3,moi;
                    ^~
../../../src/tools/gmx_principal.c:97:17: warning: unused variable 'a2' [-Wunused-variable]
   rvec       a1,a2,a3,moi;
                 ^~
../../../src/tools/gmx_principal.c:97:14: warning: unused variable 'a1' [-Wunused-variable]
   rvec       a1,a2,a3,moi;
              ^~
../../../src/tools/gmx_principal.c:95:28: warning: unused variable 'mol' [-Wunused-variable]
   int        i,j,m,gnx,nam,mol;
                            ^~~
../../../src/tools/gmx_principal.c:95:24: warning: unused variable 'nam' [-Wunused-variable]
   int        i,j,m,gnx,nam,mol;
                        ^~~
../../../src/tools/gmx_principal.c:95:18: warning: unused variable 'm' [-Wunused-variable]
   int        i,j,m,gnx,nam,mol;
                  ^
../../../src/tools/gmx_principal.c:95:16: warning: unused variable 'j' [-Wunused-variable]
   int        i,j,m,gnx,nam,mol;
                ^
../../../src/tools/gmx_principal.c:95:14: warning: unused variable 'i' [-Wunused-variable]
   int        i,j,m,gnx,nam,mol;
              ^
In file included from ../../../src/tools/gmx_principal.c:50:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_principal.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_principal.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_principal.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_mindist.lo ../../../src/tools/gmx_mindist.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_mindist.c  -fPIC -DPIC -o .libs/gmx_mindist.o
../../../src/tools/gmx_mindist.c: In function 'periodic_mindist_plot':
../../../src/tools/gmx_mindist.c:114:10: warning: unused variable 'r' [-Wunused-variable]
   real   r,rmin,rmax,rmint,tmint;
          ^
../../../src/tools/gmx_mindist.c: In function 'dist_plot':
../../../src/tools/gmx_mindist.c:245:16: warning: unused variable 'frout' [-Wunused-variable]
   t_trxframe   frout;
                ^~~~~
../../../src/tools/gmx_mindist.c: In function 'gmx_mindist':
../../../src/tools/gmx_mindist.c:473:15: warning: unused variable 'j' [-Wunused-variable]
   int       i,j,nres=0;
               ^
../../../src/tools/gmx_mindist.c:472:14: warning: unused variable 'atm' [-Wunused-variable]
   FILE      *atm;
              ^~~
../../../src/tools/gmx_mindist.c:467:14: warning: unused variable 't' [-Wunused-variable]
   real       t;
              ^
../../../src/tools/gmx_mindist.c:441:16: warning: unused variable 'bugs' [-Wunused-variable]
   static char *bugs[] = {
                ^~~~
At top level:
../../../src/tools/gmx_mindist.c:441:16: warning: 'bugs' defined but not used [-Wunused-variable]
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_mindist.c:53:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_mindist.c:51:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_mindist.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_mindist.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_msd.lo ../../../src/tools/gmx_msd.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_msd.c  -fPIC -DPIC -o .libs/gmx_msd.o
../../../src/tools/gmx_msd.c: In function 'printmol':
../../../src/tools/gmx_msd.c:455:13: warning: unused variable 'r' [-Wunused-variable]
   real  a,b,r,D,Dav,D2av,VarD,sqrtD,sqrtD_max,scale;
             ^
../../../src/tools/gmx_msd.c:452:14: warning: unused variable 'out_pdb' [-Wunused-variable]
   FILE  *out,out_pdb;
              ^~~~~~~
At top level:
../../../src/tools/gmx_msd.c:144:13: warning: 'done_corr' defined but not used [-Wunused-function]
 static void done_corr(t_corr *this)
             ^~~~~~~~~
In file included from ../../../src/tools/gmx_msd.c:57:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/tools/gmx_msd.c:51:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_msd.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_msd.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_msd.c:57:
../../../src/tools/gmx_msd.c: In function 'corr_loop':
../../../include/vec.h:362:8: warning: '*((void *)&com+16)' may be used uninitialized in this function [-Wmaybe-uninitialized]
   b[ZZ]=a[ZZ];
   ~~~~~^~~~~~
../../../src/tools/gmx_msd.c:525:29: note: '*((void *)&com+16)' was declared here
   rvec         *x[2],*xa[2],com;
                             ^~~
In file included from ../../../src/tools/gmx_msd.c:57:
../../../include/vec.h:361:8: warning: '*((void *)&com+8)' may be used uninitialized in this function [-Wmaybe-uninitialized]
   b[YY]=a[YY];
   ~~~~~^~~~~~
../../../src/tools/gmx_msd.c:525:29: note: '*((void *)&com+8)' was declared here
   rvec         *x[2],*xa[2],com;
                             ^~~
In file included from ../../../src/tools/gmx_msd.c:57:
../../../include/vec.h:360:8: warning: 'com' may be used uninitialized in this function [-Wmaybe-uninitialized]
   b[XX]=a[XX];
   ~~~~~^~~~~~
../../../src/tools/gmx_msd.c:525:29: note: 'com' was declared here
   rvec         *x[2],*xa[2],com;
                             ^~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_order.lo ../../../src/tools/gmx_order.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_order.c  -fPIC -DPIC -o .libs/gmx_order.o
../../../src/tools/gmx_order.c: In function 'find_nearest_neighbours':
../../../src/tools/gmx_order.c:86:12: warning: unused variable 'nnb' [-Wunused-variable]
   int    **nnb;
            ^~~
../../../src/tools/gmx_order.c:85:14: warning: unused variable 'mm' [-Wunused-variable]
   int     m1,mm;
              ^~
../../../src/tools/gmx_order.c:85:11: warning: unused variable 'm1' [-Wunused-variable]
   int     m1,mm;
           ^~
../../../src/tools/gmx_order.c:84:12: warning: unused variable 'd' [-Wunused-variable]
   t_dist  *d;
            ^
../../../src/tools/gmx_order.c:83:12: warning: unused variable 'dmat' [-Wunused-variable]
   t_mat   *dmat;
            ^~~~
../../../src/tools/gmx_order.c:80:18: warning: unused variable 'dx2' [-Wunused-variable]
   rvec    dx,dx1,dx2,rj,rk,urk,urj;
                  ^~~
../../../src/tools/gmx_order.c:80:14: warning: unused variable 'dx1' [-Wunused-variable]
   rvec    dx,dx1,dx2,rj,rk,urk,urj;
              ^~~
../../../src/tools/gmx_order.c:79:14: warning: unused variable 'i2' [-Wunused-variable]
   int     i1,i2,i,ibin,j,k,l,n,*nn[4];
              ^~
../../../src/tools/gmx_order.c:79:11: warning: unused variable 'i1' [-Wunused-variable]
   int     i1,i2,i,ibin,j,k,l,n,*nn[4];
           ^~
../../../src/tools/gmx_order.c:77:11: warning: unused variable 'fnsgdist' [-Wunused-variable]
   char    fnsgdist[32];
           ^~~~~~~~
../../../src/tools/gmx_order.c:76:12: warning: unused variable 'fpoutdist' [-Wunused-variable]
   FILE    *fpoutdist;
            ^~~~~~~~~
../../../src/tools/gmx_order.c: In function 'calc_tetra_order_parm':
../../../src/tools/gmx_order.c:228:14: warning: unused variable 'i' [-Wunused-variable]
   int        i,*isize,ng,nframes;
              ^
../../../src/tools/gmx_order.c:219:39: warning: unused variable 'subtitle' [-Wunused-variable]
   char       title[STRLEN],fn[STRLEN],subtitle[STRLEN];
                                       ^~~~~~~~
../../../src/tools/gmx_order.c:219:28: warning: unused variable 'fn' [-Wunused-variable]
   char       title[STRLEN],fn[STRLEN],subtitle[STRLEN];
                            ^~
../../../src/tools/gmx_order.c: In function 'calc_order':
../../../src/tools/gmx_order.c:315:9: warning: unused variable 'dbangle' [-Wunused-variable]
    real dbangle = 0, /* angle between double bond and  axis            */
         ^~~~~~~
../../../src/tools/gmx_order.c:311:13: warning: unused variable 'l' [-Wunused-variable]
     i,j,m,k,l,teller = 0,
             ^
../../../src/tools/gmx_order.c: In function 'gmx_order':
../../../src/tools/gmx_order.c:556:13: warning: unused variable 'i' [-Wunused-variable]
             i,
             ^
In file included from ../../../src/tools/gmx_order.c:52:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_order.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_order.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/gmx_order.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_rama.lo ../../../src/tools/gmx_rama.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_rama.c  -fPIC -DPIC -o .libs/gmx_rama.o
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_rama.c:52:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_rama.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_rama.c:46:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_rama.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_polystat.lo ../../../src/tools/gmx_polystat.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_polystat.c  -fPIC -DPIC -o .libs/gmx_polystat.o
In file included from ../../../src/tools/gmx_polystat.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_polystat.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_polystat.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_polystat.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_energy.lo ../../../src/tools/gmx_energy.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_energy.c  -fPIC -DPIC -o .libs/gmx_energy.o
../../../src/tools/gmx_energy.c: In function 'select_by_name':
../../../src/tools/gmx_energy.c:139:8: warning: unused variable 'n' [-Wunused-variable]
   int  n,k,kk,j,i,nmatch,nind,nss;
        ^
../../../src/tools/gmx_energy.c: In function 'analyse_ener':
../../../src/tools/gmx_energy.c:529:16: warning: unused variable 'kkk' [-Wunused-variable]
   int  i,j,m,k,kkk;
                ^~~
../../../src/tools/gmx_energy.c:524:30: warning: unused variable 'diffav' [-Wunused-variable]
   real sfrac,oldfrac,diffsum,diffav,fstep,pr_aver,pr_stddev,fluct2;
                              ^~~~~~
../../../src/tools/gmx_energy.c:524:22: warning: unused variable 'diffsum' [-Wunused-variable]
   real sfrac,oldfrac,diffsum,diffav,fstep,pr_aver,pr_stddev,fluct2;
                      ^~~~~~~
../../../src/tools/gmx_energy.c:524:14: warning: unused variable 'oldfrac' [-Wunused-variable]
   real sfrac,oldfrac,diffsum,diffav,fstep,pr_aver,pr_stddev,fluct2;
              ^~~~~~~
../../../src/tools/gmx_energy.c:524:8: warning: unused variable 'sfrac' [-Wunused-variable]
   real sfrac,oldfrac,diffsum,diffav,fstep,pr_aver,pr_stddev,fluct2;
        ^~~~~
../../../src/tools/gmx_energy.c: In function 'fec':
../../../src/tools/gmx_energy.c:770:8: warning: unused variable 't' [-Wunused-variable]
   real t, aver, beta;
        ^
../../../src/tools/gmx_energy.c:766:22: warning: unused variable 'step' [-Wunused-variable]
   int  nre,timecheck,step,nenergy2,maxenergy;
                      ^~~~
../../../src/tools/gmx_energy.c:766:8: warning: unused variable 'nre' [-Wunused-variable]
   int  nre,timecheck,step,nenergy2,maxenergy;
        ^~~
../../../src/tools/gmx_energy.c: In function 'gmx_energy':
../../../src/tools/gmx_energy.c:979:16: warning: unused variable 'nms' [-Wunused-variable]
   char       **nms;
                ^~~
../../../src/tools/gmx_energy.c:977:27: warning: unused variable 'enm2' [-Wunused-variable]
   char       **enm=NULL,**enm2=NULL,**leg=NULL,**pairleg,**odtleg,**otenleg;
                           ^~~~
../../../src/tools/gmx_energy.c:973:42: warning: unused variable 'bEDR' [-Wunused-variable]
   bool       bFoundFirst,bFoundOld,bCont,bEDR,bVisco;
                                          ^~~~
../../../src/tools/gmx_energy.c:959:23: warning: unused variable 'ee' [-Wunused-variable]
   t_energy   *oldee,**ee;
                       ^~
../../../src/tools/gmx_energy.c:953:16: warning: unused variable 'drout' [-Wunused-variable]
   FILE       **drout;
                ^~~~~
At top level:
../../../src/tools/gmx_energy.c:118:12: warning: 'strcount' defined but not used [-Wunused-function]
 static int strcount(char *s1,char *s2)
            ^~~~~~~~
In file included from ../../../src/tools/gmx_energy.c:52:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_energy.c:50:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_energy.c:46:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_energy.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_potential.lo ../../../src/tools/gmx_potential.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_potential.c  -fPIC -DPIC -o .libs/gmx_potential.o
../../../src/tools/gmx_potential.c: In function 'calc_potential':
../../../src/tools/gmx_potential.c:108:9: warning: unused variable 'j' [-Wunused-variable]
       i,j,n,             /* loop indices */
         ^
../../../src/tools/gmx_potential.c:107:9: warning: unused variable 'slCount' [-Wunused-variable]
       **slCount,         /* nr. of atoms in one slice for a group */
         ^~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_potential.c:55:
At top level:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_potential.c:53:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_potential.c:50:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_potential.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_rotacf.lo ../../../src/tools/gmx_rotacf.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_rotacf.c  -fPIC -DPIC -o .libs/gmx_rotacf.o
In file included from ../../../src/tools/gmx_rotacf.c:54:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_rotacf.c:54:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_rotacf.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_rotacf.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_saltbr.lo ../../../src/tools/gmx_saltbr.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_saltbr.c  -fPIC -DPIC -o .libs/gmx_saltbr.o
../../../src/tools/gmx_saltbr.c: In function 'gmx_saltbr':
../../../src/tools/gmx_saltbr.c:163:14: warning: unused variable 'label' [-Wunused-variable]
   char       label[234];
              ^~~~~
../../../src/tools/gmx_saltbr.c:162:17: warning: unused variable 'dt' [-Wunused-variable]
   double     t0,dt;
                 ^~
../../../src/tools/gmx_saltbr.c:162:14: warning: unused variable 't0' [-Wunused-variable]
   double     t0,dt;
              ^~
../../../src/tools/gmx_saltbr.c:156:50: warning: unused variable 'n3' [-Wunused-variable]
   int        status,i,j,k,m,nnn,teller,ncg,n1,n2,n3,natoms;
                                                  ^~
../../../src/tools/gmx_saltbr.c:156:47: warning: unused variable 'n2' [-Wunused-variable]
   int        status,i,j,k,m,nnn,teller,ncg,n1,n2,n3,natoms;
                                               ^~
../../../src/tools/gmx_saltbr.c:156:44: warning: unused variable 'n1' [-Wunused-variable]
   int        status,i,j,k,m,nnn,teller,ncg,n1,n2,n3,natoms;
                                            ^~
In file included from ../../../src/tools/gmx_saltbr.c:48:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_saltbr.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_saltbr.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_saltbr.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_rmsf.lo ../../../src/tools/gmx_rmsf.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_rmsf.c  -fPIC -DPIC -o .libs/gmx_rmsf.o
../../../src/tools/gmx_rmsf.c: In function 'gmx_rmsf':
../../../src/tools/gmx_rmsf.c:211:16: warning: unused variable 'buf' [-Wunused-variable]
   char         buf[256],*label;
                ^~~
../../../src/tools/gmx_rmsf.c:210:33: warning: unused variable 'res0' [-Wunused-variable]
   int          status,npdbatoms,res0;
                                 ^~~~
../../../src/tools/gmx_rmsf.c:206:16: warning: unused variable 'bCont' [-Wunused-variable]
   bool         bCont;
                ^~~~~
../../../src/tools/gmx_rmsf.c:202:16: warning: unused variable 'ir' [-Wunused-variable]
   t_inputrec   ir;
                ^~
../../../src/tools/gmx_rmsf.c:201:16: warning: unused variable 'header' [-Wunused-variable]
   t_tpxheader  header;
                ^~~~~~
../../../src/tools/gmx_rmsf.c:199:33: warning: unused variable 'w_rms' [-Wunused-variable]
   real         t,lambda,*w_rls,*w_rms;
                                 ^~~~~
../../../src/tools/gmx_rmsf.c:199:18: warning: unused variable 'lambda' [-Wunused-variable]
   real         t,lambda,*w_rls,*w_rms;
                  ^~~~~~
../../../src/tools/gmx_rmsf.c:198:40: warning: unused variable 'g' [-Wunused-variable]
   int          step,nre,natom,natoms,i,g,m,teller=0;
                                        ^
../../../src/tools/gmx_rmsf.c:198:31: warning: unused variable 'natoms' [-Wunused-variable]
   int          step,nre,natom,natoms,i,g,m,teller=0;
                               ^~~~~~
../../../src/tools/gmx_rmsf.c:198:21: warning: unused variable 'nre' [-Wunused-variable]
   int          step,nre,natom,natoms,i,g,m,teller=0;
                     ^~~
../../../src/tools/gmx_rmsf.c:198:16: warning: unused variable 'step' [-Wunused-variable]
   int          step,nre,natom,natoms,i,g,m,teller=0;
                ^~~~
../../../src/tools/gmx_rmsf.c:189:39: warning: unused variable 'bdevX' [-Wunused-variable]
   static bool bRes=FALSE,bAniso=FALSE,bdevX=FALSE,bFit=TRUE;
                                       ^~~~~
At top level:
../../../src/tools/gmx_rmsf.c:189:39: warning: 'bdevX' defined but not used [-Wunused-variable]
In file included from ../../../src/tools/gmx_rmsf.c:50:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/tools/gmx_rmsf.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_rmsf.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_rmsf.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_rmsf.c:45:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_sgangle.lo ../../../src/tools/gmx_sgangle.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_sgangle.c  -fPIC -DPIC -o .libs/gmx_sgangle.o
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_sgangle.c:52:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_sgangle.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_sgangle.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_sgangle.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_spol.lo ../../../src/tools/gmx_spol.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_spol.c  -fPIC -DPIC -o .libs/gmx_spol.o
../../../src/tools/gmx_spol.c: In function 'gmx_spol':
../../../src/tools/gmx_spol.c:165:28: warning: unused variable 'bPBC' [-Wunused-variable]
   static bool bCom = FALSE,bPBC = FALSE;
                            ^~~~
../../../src/tools/gmx_spol.c:131:13: warning: unused variable 'xtop' [-Wunused-variable]
   rvec     *xtop,*x,xref,try,dx,dip,dir;
             ^~~~
../../../src/tools/gmx_spol.c:127:12: warning: unused variable 'title' [-Wunused-variable]
   char     title[STRLEN];
            ^~~~~
At top level:
../../../src/tools/gmx_spol.c:165:28: warning: 'bPBC' defined but not used [-Wunused-variable]
   static bool bCom = FALSE,bPBC = FALSE;
                            ^~~~
In file included from ../../../src/tools/gmx_spol.c:45:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_spol.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_spol.c:43:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_spol.c:41:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_sorient.lo ../../../src/tools/gmx_sorient.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_sorient.c  -fPIC -DPIC -o .libs/gmx_sorient.o
../../../src/tools/gmx_sorient.c: In function 'gmx_sorient':
../../../src/tools/gmx_sorient.c:114:72: warning: unused variable 'mtot' [-Wunused-variable]
   real    inp,outp,two_pi,nav,normfac,rmin2,rmax2,rcut,rcut2,r2,r,mass,mtot;
                                                                        ^~~~
../../../src/tools/gmx_sorient.c:114:67: warning: unused variable 'mass' [-Wunused-variable]
   real    inp,outp,two_pi,nav,normfac,rmin2,rmax2,rcut,rcut2,r2,r,mass,mtot;
                                                                   ^~~~
../../../src/tools/gmx_sorient.c:114:20: warning: variable 'two_pi' set but not used [-Wunused-but-set-variable]
   real    inp,outp,two_pi,nav,normfac,rmin2,rmax2,rcut,rcut2,r2,r,mass,mtot;
                    ^~~~~~
../../../src/tools/gmx_sorient.c:108:13: warning: unused variable 'j' [-Wunused-variable]
   int     i,j,p,sa0,sa1,sa2,n,ntot,nf,m,*hist1,*hist2,*histn,nbin1,nbin2,nrbin;
             ^
In file included from ../../../src/tools/gmx_sorient.c:45:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_sorient.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_sorient.c:43:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_sorient.c:41:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_sas.lo ../../../src/tools/gmx_sas.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_sas.c  -fPIC -DPIC -o .libs/gmx_sas.o
../../../src/tools/gmx_sas.c: In function 'sas_plot':
../../../src/tools/gmx_sas.c:369:12: warning: unused variable 'mm' [-Wunused-variable]
       real mm;
            ^~
In file included from ../../../src/tools/gmx_sas.c:55:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_sas.c:52:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_sas.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_sas.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_sas.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
../../../src/tools/gmx_sas.c: In function 'connelly_plot':
../../../src/tools/gmx_sas.c:152:45: warning: '%d' directive writing between 1 and 11 bytes into a region of size 6 [-Wformat-overflow=]
       sprintf(atoms->pdbinfo[ii0].pdbresnr,"%d",r0+1);
                                             ^~
../../../src/tools/gmx_sas.c:152:44: note: directive argument in the range [-2147483647, 2147483647]
       sprintf(atoms->pdbinfo[ii0].pdbresnr,"%d",r0+1);
                                            ^~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/tools/gmx_sas.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 2 and 12 bytes into a destination of size 6
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_rdf.lo ../../../src/tools/gmx_rdf.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_rdf.c  -fPIC -DPIC -o .libs/gmx_rdf.o
../../../src/tools/gmx_rdf.c: In function 'do_rdf':
../../../src/tools/gmx_rdf.c:168:23: warning: unused variable 'index_cm' [-Wunused-variable]
   atom_id    **index,*index_cm=NULL;
                       ^~~~~~~~
../../../src/tools/gmx_rdf.c:167:21: warning: unused variable 'isize_cm' [-Wunused-variable]
   int        *isize,isize_cm=0,nrdf=0,max_i,isize0,isize_g;
                     ^~~~~~~~
../../../src/tools/gmx_rdf.c:164:40: warning: unused variable 'n' [-Wunused-variable]
   int        g,natoms,i,j,k,nbin,j0,j1,n,nframes;
                                        ^
../../../src/tools/gmx_rdf.c:164:37: warning: unused variable 'j1' [-Wunused-variable]
   int        g,natoms,i,j,k,nbin,j0,j1,n,nframes;
                                     ^~
../../../src/tools/gmx_rdf.c:164:34: warning: unused variable 'j0' [-Wunused-variable]
   int        g,natoms,i,j,k,nbin,j0,j1,n,nframes;
                                  ^~
../../../src/tools/gmx_rdf.c:162:28: warning: unused variable 'outf2' [-Wunused-variable]
   char       outf1[STRLEN],outf2[STRLEN];
                            ^~~~~
../../../src/tools/gmx_rdf.c:162:14: warning: unused variable 'outf1' [-Wunused-variable]
   char       outf1[STRLEN],outf2[STRLEN];
              ^~~~~
In file included from ../../../include/fftgrid.h:46,
                 from ../../../src/tools/gmx_rdf.c:57:
At top level:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_rdf.c:52:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_rdf.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_rdf.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_rdf.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_rmsdist.lo ../../../src/tools/gmx_rmsdist.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_rmsdist.c  -fPIC -DPIC -o .libs/gmx_rmsdist.o
../../../src/tools/gmx_rmsdist.c: In function 'analyze_noe_equivalent':
../../../src/tools/gmx_rmsdist.c:249:11: warning: unused variable 'fp' [-Wunused-variable]
   FILE   *fp;
           ^~
../../../src/tools/gmx_rmsdist.c: In function 'gmx_rmsdist':
../../../src/tools/gmx_rmsdist.c:534:36: warning: unused variable 'gj' [-Wunused-variable]
   int          natom,i,j,teller,gi,gj;
                                    ^~
../../../src/tools/gmx_rmsdist.c:534:33: warning: unused variable 'gi' [-Wunused-variable]
   int          natom,i,j,teller,gi,gj;
                                 ^~
../../../src/tools/gmx_rmsdist.c:534:24: warning: unused variable 'j' [-Wunused-variable]
   int          natom,i,j,teller,gi,gj;
                        ^
In file included from ../../../src/tools/gmx_rmsdist.c:52:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_rmsdist.c:52:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_rmsdist.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_rmsdist.c:47:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_tcaf.lo ../../../src/tools/gmx_tcaf.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_tcaf.c  -fPIC -DPIC -o .libs/gmx_tcaf.o
../../../src/tools/gmx_tcaf.c: In function 'gmx_tcaf':
../../../src/tools/gmx_tcaf.c:274:16: warning: unused variable 'c1' [-Wunused-variable]
   real       **c1,**tc;
                ^~
../../../src/tools/gmx_tcaf.c:265:14: warning: unused variable 'bTPS' [-Wunused-variable]
   bool       bTPS,bTop; /* ,bCubic; */
              ^~~~
In file included from ../../../src/tools/gmx_tcaf.c:57:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/tools/gmx_tcaf.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/gmx_tcaf.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_tcaf.c:43:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_rms.lo ../../../src/tools/gmx_rms.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_rms.c  -fPIC -DPIC -o .libs/gmx_rms.o
In file included from ../../../src/tools/gmx_rms.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_rms.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_rms.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_rms.c:46:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_velacc.lo ../../../src/tools/gmx_velacc.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_velacc.c  -fPIC -DPIC -o .libs/gmx_velacc.o
In file included from ../../../src/tools/gmx_velacc.c:57:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/tools/gmx_velacc.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/gmx_velacc.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_velacc.c:43:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_clustsize.lo ../../../src/tools/gmx_clustsize.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_clustsize.c  -fPIC -DPIC -o .libs/gmx_clustsize.o
../../../src/tools/gmx_clustsize.c: In function 'clust_size':
../../../src/tools/gmx_clustsize.c:94:50: warning: unused variable 'n_y' [-Wunused-variable]
   int     i,j,k,ai,aj,ak,ci,cj,nframe,nclust,n_x,n_y,max_size=0;
                                                  ^~~
../../../src/tools/gmx_clustsize.c:94:23: warning: unused variable 'ak' [-Wunused-variable]
   int     i,j,k,ai,aj,ak,ci,cj,nframe,nclust,n_x,n_y,max_size=0;
                       ^~
../../../src/tools/gmx_clustsize.c:89:40: warning: unused variable 'nsame' [-Wunused-variable]
   int     version,generation,sss,ii,jj,nsame;
                                        ^~~~~
../../../src/tools/gmx_clustsize.c: In function 'gmx_clustsize':
../../../src/tools/gmx_clustsize.c:396:18: warning: unused variable 'bRDF' [-Wunused-variable]
   bool       bSQ,bRDF;
                  ^~~~
../../../src/tools/gmx_clustsize.c:396:14: warning: unused variable 'bSQ' [-Wunused-variable]
   bool       bSQ,bRDF;
              ^~~
In file included from ../../../include/pme.h:46,
                 from ../../../src/tools/gmx_clustsize.c:62:
At top level:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/tools/gmx_clustsize.c:52:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_clustsize.c:50:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_clustsize.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_clustsize.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_helixorient.lo ../../../src/tools/gmx_helixorient.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_helixorient.c  -fPIC -DPIC -o .libs/gmx_helixorient.o
../../../src/tools/gmx_helixorient.c: In function 'gmx_helixorient':
../../../src/tools/gmx_helixorient.c:125:14: warning: unused variable 'rotangle' [-Wunused-variable]
     real tmp,rotangle;
              ^~~~~~~~
../../../src/tools/gmx_helixorient.c:107:10: warning: unused variable 'axes' [-Wunused-variable]
     rvec axes[3];
          ^~~~
../../../src/tools/gmx_helixorient.c:106:10: warning: unused variable 'axes_t0' [-Wunused-variable]
     rvec axes_t0[3];
          ^~~~~~~
../../../src/tools/gmx_helixorient.c:93:27: warning: unused variable 'vproj' [-Wunused-variable]
     rvec v1,v2,p1,p2,vtmp,vproj;
                           ^~~~~
../../../src/tools/gmx_helixorient.c:93:22: warning: unused variable 'vtmp' [-Wunused-variable]
     rvec v1,v2,p1,p2,vtmp,vproj;
                      ^~~~
../../../src/tools/gmx_helixorient.c:93:19: warning: unused variable 'p2' [-Wunused-variable]
     rvec v1,v2,p1,p2,vtmp,vproj;
                   ^~
../../../src/tools/gmx_helixorient.c:93:16: warning: unused variable 'p1' [-Wunused-variable]
     rvec v1,v2,p1,p2,vtmp,vproj;
                ^~
../../../src/tools/gmx_helixorient.c:92:10: warning: unused variable 'averageaxis' [-Wunused-variable]
     rvec averageaxis;
          ^~~~~~~~~~~
../../../src/tools/gmx_helixorient.c:86:9: warning: unused variable 'd' [-Wunused-variable]
     int d,i,j,teller=0;
         ^
../../../src/tools/gmx_helixorient.c:80:18: warning: unused variable 'dx' [-Wunused-variable]
     rvec *x=NULL,dx;
                  ^~
In file included from ../../../src/tools/gmx_helixorient.c:48:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_helixorient.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_helixorient.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_helixorient.c:45:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_sdf.lo ../../../src/tools/gmx_sdf.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_sdf.c  -fPIC -DPIC -o .libs/gmx_sdf.o
../../../src/tools/gmx_sdf.c: In function 'do_sdf':
../../../src/tools/gmx_sdf.c:101:25: warning: unused variable 'bRefDone' [-Wunused-variable]
   bool       bTop=FALSE,bRefDone=FALSE,bInGroup=FALSE;
                         ^~~~~~~~
../../../src/tools/gmx_sdf.c:97:17: warning: unused variable 'jx' [-Wunused-variable]
   atom_id    ix,jx;
                 ^~
../../../src/tools/gmx_sdf.c:97:14: warning: unused variable 'ix' [-Wunused-variable]
   atom_id    ix,jx;
              ^~
../../../src/tools/gmx_sdf.c:92:17: warning: unused variable 'xcog' [-Wunused-variable]
   rvec       *x,xcog,dx,*x_i1,xi,*x_refmol;
                 ^~~~
../../../src/tools/gmx_sdf.c:89:23: warning: variable 'hbox' set but not used [-Wunused-but-set-variable]
   real       t,boxmin,hbox,normfac;
                       ^~~~
../../../src/tools/gmx_sdf.c:88:15: warning: unused variable 'index_ref' [-Wunused-variable]
   atom_id    *index_ref=NULL;
               ^~~~~~~~~
../../../src/tools/gmx_sdf.c:87:15: warning: unused variable 'index_cg' [-Wunused-variable]
   atom_id    *index_cg=NULL;
               ^~~~~~~~
../../../src/tools/gmx_sdf.c:85:24: warning: unused variable 'refc' [-Wunused-variable]
   int        nrefmol=0,refc=0;
                        ^~~~
../../../src/tools/gmx_sdf.c:83:14: warning: unused variable 'isize_ref' [-Wunused-variable]
   int        isize_ref=3;
              ^~~~~~~~~
../../../src/tools/gmx_sdf.c:82:14: warning: unused variable 'isize_cg' [-Wunused-variable]
   int        isize_cg=0;
              ^~~~~~~~
../../../src/tools/gmx_sdf.c:75:41: warning: unused variable 'dest' [-Wunused-variable]
   int        ng,natoms,i,j,k,l,X,Y,Z,lc,dest;
                                         ^~~~
../../../src/tools/gmx_sdf.c:75:38: warning: unused variable 'lc' [-Wunused-variable]
   int        ng,natoms,i,j,k,l,X,Y,Z,lc,dest;
                                      ^~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_sdf.c:33:
At top level:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_sdf.c:31:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_sdf.c:28:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_sdf.c:28:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
../../../src/tools/gmx_sdf.c:20:14: warning: 'SRCID_template_c' defined but not used [-Wunused-variable]
 static char *SRCID_template_c = "$Id$";
              ^~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_mdmat.lo ../../../src/tools/gmx_mdmat.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_mdmat.c  -fPIC -DPIC -o .libs/gmx_mdmat.o
../../../src/tools/gmx_mdmat.c: In function 'gmx_mdmat':
../../../src/tools/gmx_mdmat.c:193:14: warning: unused variable 'nr0' [-Wunused-variable]
   int        nr0;
              ^~~
../../../src/tools/gmx_mdmat.c:192:45: warning: unused variable 'it' [-Wunused-variable]
   int        i,j,status,nres,natoms,nframes,it,trxnat;
                                             ^~
../../../src/tools/gmx_mdmat.c:165:15: warning: unused variable 'bAtom' [-Wunused-variable]
   static bool bAtom=FALSE;
               ^~~~~
At top level:
../../../src/tools/gmx_mdmat.c:165:15: warning: 'bAtom' defined but not used [-Wunused-variable]
In file included from ../../../src/tools/gmx_mdmat.c:49:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_mdmat.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_mdmat.c:44:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_mdmat.c:44:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o correl.lo ../../../src/tools/correl.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/correl.c  -fPIC -DPIC -o .libs/correl.o
../../../src/tools/correl.c: In function 'complex_mult':
../../../src/tools/correl.c:189:10: warning: unused variable 'no2' [-Wunused-variable]
   int  i,no2,n_2,k;
          ^~~
In file included from ../../../include/gmx_fft.h:41,
                 from ../../../src/tools/correl.c:43:
At top level:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_hbond.lo ../../../src/tools/gmx_hbond.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_hbond.c  -fPIC -DPIC -o .libs/gmx_hbond.o
../../../src/tools/gmx_hbond.c: In function 'mk_hbmap':
../../../src/tools/gmx_hbond.c:182:10: warning: unused variable 'j' [-Wunused-variable]
   int  i,j;
          ^
../../../src/tools/gmx_hbond.c: In function 'add_frames':
../../../src/tools/gmx_hbond.c:194:14: warning: unused variable 'l' [-Wunused-variable]
   int  i,j,k,l;
              ^
../../../src/tools/gmx_hbond.c:194:12: warning: unused variable 'k' [-Wunused-variable]
   int  i,j,k,l;
            ^
../../../src/tools/gmx_hbond.c:194:10: warning: unused variable 'j' [-Wunused-variable]
   int  i,j,k,l;
          ^
../../../src/tools/gmx_hbond.c:194:8: warning: unused variable 'i' [-Wunused-variable]
   int  i,j,k,l;
        ^
../../../src/tools/gmx_hbond.c: In function 'search_donors':
../../../src/tools/gmx_hbond.c:543:14: warning: unused variable 'stop' [-Wunused-variable]
   bool       stop;
              ^~~~
../../../src/tools/gmx_hbond.c:539:22: warning: unused variable 'n' [-Wunused-variable]
   int        i,j,nra,n;
                      ^
../../../src/tools/gmx_hbond.c:539:18: warning: unused variable 'nra' [-Wunused-variable]
   int        i,j,nra,n;
                  ^~~
../../../src/tools/gmx_hbond.c: In function 'is_hbond':
../../../src/tools/gmx_hbond.c:900:19: warning: unused variable 'ihb' [-Wunused-variable]
   int  h,hh,id,ja,ihb;
                   ^~~
../../../src/tools/gmx_hbond.c: In function 'merge_hb':
../../../src/tools/gmx_hbond.c:1021:44: warning: unused variable 'ogrp' [-Wunused-variable]
   int  i,inrnew,indnew,j,ii,jj,m,id,ia,grp,ogrp,ntmp;
                                            ^~~~
../../../src/tools/gmx_hbond.c:1021:40: warning: unused variable 'grp' [-Wunused-variable]
   int  i,inrnew,indnew,j,ii,jj,m,id,ia,grp,ogrp,ntmp;
                                        ^~~
../../../src/tools/gmx_hbond.c:1021:32: warning: unused variable 'm' [-Wunused-variable]
   int  i,inrnew,indnew,j,ii,jj,m,id,ia,grp,ogrp,ntmp;
                                ^
../../../src/tools/gmx_hbond.c: In function 'do_nhb_dist':
../../../src/tools/gmx_hbond.c:1077:8: warning: unused variable 'nhb' [-Wunused-variable]
   h_id nhb;
        ^~~
../../../src/tools/gmx_hbond.c: In function 'smooth_tail':
../../../src/tools/gmx_hbond.c:1439:9: warning: unused variable 'fp' [-Wunused-variable]
   FILE *fp;
         ^~
../../../src/tools/gmx_hbond.c: In function 'analyse_corr':
../../../src/tools/gmx_hbond.c:1461:56: warning: unused variable 'dt' [-Wunused-variable]
   real   Q=0,chi22,chi2,dg,dgp,tau_hb,dtau,tau_rlx,e_1,dt,sigma_k,sigma_kp,ddg;
                                                        ^~
../../../src/tools/gmx_hbond.c:1461:28: warning: unused variable 'dgp' [-Wunused-variable]
   real   Q=0,chi22,chi2,dg,dgp,tau_hb,dtau,tau_rlx,e_1,dt,sigma_k,sigma_kp,ddg;
                            ^~~
../../../src/tools/gmx_hbond.c:1461:25: warning: unused variable 'dg' [-Wunused-variable]
   real   Q=0,chi22,chi2,dg,dgp,tau_hb,dtau,tau_rlx,e_1,dt,sigma_k,sigma_kp,ddg;
                         ^~
../../../src/tools/gmx_hbond.c:1461:14: warning: variable 'chi22' set but not used [-Wunused-but-set-variable]
   real   Q=0,chi22,chi2,dg,dgp,tau_hb,dtau,tau_rlx,e_1,dt,sigma_k,sigma_kp,ddg;
              ^~~~~
../../../src/tools/gmx_hbond.c: In function 'do_hbac':
../../../src/tools/gmx_hbond.c:1585:27: warning: variable 'ngh' set but not used [-Wunused-but-set-variable]
   int   nh,nhbonds,nhydro,ngh;
                           ^~~
../../../src/tools/gmx_hbond.c:1577:18: warning: unused variable 'nd' [-Wunused-variable]
   int  i,j,k,m,n,nd,ihb,idist,n2,nn;
                  ^~
../../../src/tools/gmx_hbond.c:1577:16: warning: unused variable 'n' [-Wunused-variable]
   int  i,j,k,m,n,nd,ihb,idist,n2,nn;
                ^
../../../src/tools/gmx_hbond.c: In function 'gmx_hbond':
../../../src/tools/gmx_hbond.c:2051:30: warning: unused variable 'bin' [-Wunused-variable]
   int        grp,nabin,nrbin,bin,resdist,ihb;
                              ^~~
../../../src/tools/gmx_hbond.c:2049:43: warning: unused variable 'was' [-Wunused-variable]
   bool    bSelected,bHBmap,bStop,bTwo,new,was,bBox,bTric;
                                           ^~~
../../../src/tools/gmx_hbond.c:2049:39: warning: unused variable 'new' [-Wunused-variable]
   bool    bSelected,bHBmap,bStop,bTwo,new,was,bBox,bTric;
                                       ^~~
../../../src/tools/gmx_hbond.c:2045:34: warning: unused variable 'ja' [-Wunused-variable]
   int     h,i,j,k,l,start,end,id,ja,ogrp,nsel;
                                  ^~
../../../src/tools/gmx_hbond.c:2045:31: warning: unused variable 'id' [-Wunused-variable]
   int     h,i,j,k,l,start,end,id,ja,ogrp,nsel;
                               ^~
../../../src/tools/gmx_hbond.c:2045:27: warning: unused variable 'end' [-Wunused-variable]
   int     h,i,j,k,l,start,end,id,ja,ogrp,nsel;
                           ^~~
../../../src/tools/gmx_hbond.c:2045:21: warning: unused variable 'start' [-Wunused-variable]
   int     h,i,j,k,l,start,end,id,ja,ogrp,nsel;
                     ^~~~~
../../../src/tools/gmx_hbond.c:2045:19: warning: unused variable 'l' [-Wunused-variable]
   int     h,i,j,k,l,start,end,id,ja,ogrp,nsel;
                   ^
At top level:
../../../src/tools/gmx_hbond.c:372:13: warning: 'in_list' defined but not used [-Wunused-function]
 static bool in_list(atom_id selection,int isize,atom_id *index)
             ^~~~~~~
In file included from ../../../include/gmx_fft.h:41,
                 from ../../../src/tools/correl.h:40,
                 from ../../../src/tools/gmx_hbond.c:59:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/tools/gmx_hbond.c:53:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_hbond.c:53:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_hbond.c:43:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_hbond.c:42:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_nmtraj.lo ../../../src/tools/gmx_nmtraj.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_nmtraj.c  -fPIC -DPIC -o .libs/gmx_nmtraj.o
../../../src/tools/gmx_nmtraj.c: In function 'gmx_nmtraj':
../../../src/tools/gmx_nmtraj.c:129:14: warning: variable 'dum' set but not used [-Wunused-but-set-variable]
   real       dum;
              ^~~
../../../src/tools/gmx_nmtraj.c:124:14: warning: unused variable 'found' [-Wunused-variable]
   bool       found;
              ^~~~~
../../../src/tools/gmx_nmtraj.c:123:25: warning: unused variable 'sum' [-Wunused-variable]
   real       omega,Ekin,sum,m,vel;
                         ^~~
../../../src/tools/gmx_nmtraj.c:121:15: warning: unused variable 'out_eigval' [-Wunused-variable]
   real       *out_eigval;
               ^~~~~~~~~~
../../../src/tools/gmx_nmtraj.c:115:14: warning: unused variable 'neigval' [-Wunused-variable]
   int        neigval;
              ^~~~~~~
../../../src/tools/gmx_nmtraj.c:113:14: warning: unused variable 'grpname' [-Wunused-variable]
   char *     grpname;
              ^~~~~~~
../../../src/tools/gmx_nmtraj.c:111:14: warning: unused variable 'indexfile' [-Wunused-variable]
   char *     indexfile;
              ^~~~~~~~~
../../../src/tools/gmx_nmtraj.c:109:30: warning: unused variable 'v' [-Wunused-variable]
   int        i,j,k,kmode,d,s,v;
                              ^
../../../src/tools/gmx_nmtraj.c:109:28: warning: unused variable 's' [-Wunused-variable]
   int        i,j,k,kmode,d,s,v;
                            ^
../../../src/tools/gmx_nmtraj.c:105:15: warning: unused variable 'eigvalnr' [-Wunused-variable]
   int        *eigvalnr;
               ^~~~~~~~
In file included from ../../../src/tools/gmx_nmtraj.c:54:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/tools/gmx_nmtraj.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_nmtraj.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_nmtraj.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_nmtraj.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_sham.lo ../../../src/tools/gmx_sham.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_sham.c  -fPIC -DPIC -o .libs/gmx_sham.o
../../../src/tools/gmx_sham.c: In function 'do_sham':
../../../src/tools/gmx_sham.c:286:32: warning: unused variable 'd' [-Wunused-variable]
   int     i,j,k,imin,len,index,d,*nbin,*bindex,bi;
                                ^
../../../src/tools/gmx_sham.c: In function 'gmx_sham':
../../../src/tools/gmx_sham.c:778:41: warning: unused variable 'db' [-Wunused-variable]
   double   *av,*sig,cum1,cum2,cum3,cum4,db;
                                         ^~
../../../src/tools/gmx_sham.c:778:36: warning: unused variable 'cum4' [-Wunused-variable]
   double   *av,*sig,cum1,cum2,cum3,cum4,db;
                                    ^~~~
../../../src/tools/gmx_sham.c:778:31: warning: unused variable 'cum3' [-Wunused-variable]
   double   *av,*sig,cum1,cum2,cum3,cum4,db;
                               ^~~~
../../../src/tools/gmx_sham.c:778:26: warning: unused variable 'cum2' [-Wunused-variable]
   double   *av,*sig,cum1,cum2,cum3,cum4,db;
                          ^~~~
../../../src/tools/gmx_sham.c:778:21: warning: unused variable 'cum1' [-Wunused-variable]
   double   *av,*sig,cum1,cum2,cum3,cum4,db;
                     ^~~~
../../../src/tools/gmx_sham.c:778:17: warning: unused variable 'sig' [-Wunused-variable]
   double   *av,*sig,cum1,cum2,cum3,cum4,db;
                 ^~~
../../../src/tools/gmx_sham.c:778:13: warning: unused variable 'av' [-Wunused-variable]
   double   *av,*sig,cum1,cum2,cum3,cum4,db;
             ^~
../../../src/tools/gmx_sham.c:776:66: warning: unused variable 'error' [-Wunused-variable]
   real     **val,**et_val,**dt_val,*t,*e_t,e_dt,d_dt,*d_t,dt,tot,error;
                                                                  ^~~~~
../../../src/tools/gmx_sham.c:776:62: warning: unused variable 'tot' [-Wunused-variable]
   real     **val,**et_val,**dt_val,*t,*e_t,e_dt,d_dt,*d_t,dt,tot,error;
                                                              ^~~
../../../src/tools/gmx_sham.c:775:51: warning: unused variable 'j' [-Wunused-variable]
   int      n,e_n,d_n,nlast,s,nset,e_nset,d_nset,i,j=0,*idim,*ibox;
                                                   ^
../../../src/tools/gmx_sham.c:775:28: warning: unused variable 's' [-Wunused-variable]
   int      n,e_n,d_n,nlast,s,nset,e_nset,d_nset,i,j=0,*idim,*ibox;
                            ^
../../../src/tools/gmx_sham.c:775:22: warning: unused variable 'nlast' [-Wunused-variable]
   int      n,e_n,d_n,nlast,s,nset,e_nset,d_nset,i,j=0,*idim,*ibox;
                      ^~~~~
../../../src/tools/gmx_sham.c:774:13: warning: unused variable 'out' [-Wunused-variable]
   FILE     *out;
             ^~~
../../../src/tools/gmx_sham.c:728:35: warning: unused variable 'resol' [-Wunused-variable]
   static int  nsets_in=1,nb_min=4,resol=10,nlevels=25;
                                   ^~~~~
../../../src/tools/gmx_sham.c:728:26: warning: unused variable 'nb_min' [-Wunused-variable]
   static int  nsets_in=1,nb_min=4,resol=10,nlevels=25;
                          ^~~~~~
../../../src/tools/gmx_sham.c:723:15: warning: unused variable 'bShamEner' [-Wunused-variable]
   static bool bShamEner=TRUE,bSham=TRUE;
               ^~~~~~~~~
../../../src/tools/gmx_sham.c:722:56: warning: unused variable 'bPower' [-Wunused-variable]
   static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE;
                                                        ^~~~~~
../../../src/tools/gmx_sham.c:722:41: warning: unused variable 'bEeFitAc' [-Wunused-variable]
   static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE;
                                         ^~~~~~~~
../../../src/tools/gmx_sham.c:722:28: warning: unused variable 'bEENLC' [-Wunused-variable]
   static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE;
                            ^~~~~~
../../../src/tools/gmx_sham.c:722:15: warning: unused variable 'bEESEF' [-Wunused-variable]
   static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE;
               ^~~~~~
../../../src/tools/gmx_sham.c:721:66: warning: unused variable 'bXYdy' [-Wunused-variable]
   static bool bHaveT=TRUE,bDer=FALSE,bSubAv=TRUE,bAverCorr=FALSE,bXYdy=FALSE;
                                                                  ^~~~~
../../../src/tools/gmx_sham.c:721:50: warning: unused variable 'bAverCorr' [-Wunused-variable]
   static bool bHaveT=TRUE,bDer=FALSE,bSubAv=TRUE,bAverCorr=FALSE,bXYdy=FALSE;
                                                  ^~~~~~~~~
../../../src/tools/gmx_sham.c:721:38: warning: unused variable 'bSubAv' [-Wunused-variable]
   static bool bHaveT=TRUE,bDer=FALSE,bSubAv=TRUE,bAverCorr=FALSE,bXYdy=FALSE;
                                      ^~~~~~
../../../src/tools/gmx_sham.c:720:36: warning: unused variable 'filtlen' [-Wunused-variable]
   static real tb=-1,te=-1,frac=0.5,filtlen=0,binwidth=0.1;
                                    ^~~~~~~
../../../src/tools/gmx_sham.c:720:27: warning: unused variable 'frac' [-Wunused-variable]
   static real tb=-1,te=-1,frac=0.5,filtlen=0,binwidth=0.1;
                           ^~~~
At top level:
../../../src/tools/gmx_sham.c:720:27: warning: 'frac' defined but not used [-Wunused-variable]
../../../src/tools/gmx_sham.c:720:36: warning: 'filtlen' defined but not used [-Wunused-variable]
   static real tb=-1,te=-1,frac=0.5,filtlen=0,binwidth=0.1;
                                    ^~~~~~~
../../../src/tools/gmx_sham.c:721:38: warning: 'bSubAv' defined but not used [-Wunused-variable]
   static bool bHaveT=TRUE,bDer=FALSE,bSubAv=TRUE,bAverCorr=FALSE,bXYdy=FALSE;
                                      ^~~~~~
../../../src/tools/gmx_sham.c:721:50: warning: 'bAverCorr' defined but not used [-Wunused-variable]
   static bool bHaveT=TRUE,bDer=FALSE,bSubAv=TRUE,bAverCorr=FALSE,bXYdy=FALSE;
                                                  ^~~~~~~~~
../../../src/tools/gmx_sham.c:721:66: warning: 'bXYdy' defined but not used [-Wunused-variable]
   static bool bHaveT=TRUE,bDer=FALSE,bSubAv=TRUE,bAverCorr=FALSE,bXYdy=FALSE;
                                                                  ^~~~~
../../../src/tools/gmx_sham.c:722:15: warning: 'bEESEF' defined but not used [-Wunused-variable]
   static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE;
               ^~~~~~
../../../src/tools/gmx_sham.c:722:28: warning: 'bEENLC' defined but not used [-Wunused-variable]
   static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE;
                            ^~~~~~
../../../src/tools/gmx_sham.c:722:41: warning: 'bEeFitAc' defined but not used [-Wunused-variable]
   static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE;
                                         ^~~~~~~~
../../../src/tools/gmx_sham.c:722:56: warning: 'bPower' defined but not used [-Wunused-variable]
   static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE;
                                                        ^~~~~~
../../../src/tools/gmx_sham.c:723:15: warning: 'bShamEner' defined but not used [-Wunused-variable]
   static bool bShamEner=TRUE,bSham=TRUE;
               ^~~~~~~~~
../../../src/tools/gmx_sham.c:728:26: warning: 'nb_min' defined but not used [-Wunused-variable]
   static int  nsets_in=1,nb_min=4,resol=10,nlevels=25;
                          ^~~~~~
../../../src/tools/gmx_sham.c:728:35: warning: 'resol' defined but not used [-Wunused-variable]
   static int  nsets_in=1,nb_min=4,resol=10,nlevels=25;
                                   ^~~~~
In file included from ../../../src/tools/gmx_sham.c:56:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/tools/gmx_sham.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_sham.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_sham.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_sham.c:41:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_traj.lo ../../../src/tools/gmx_traj.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_traj.c  -fPIC -DPIC -o .libs/gmx_traj.o
../../../src/tools/gmx_traj.c: In function 'write_pdb_bfac':
../../../src/tools/gmx_traj.c:337:11: warning: unused variable 'bOne' [-Wunused-variable]
   bool    bOne;
           ^~~~
../../../src/tools/gmx_traj.c: In function 'gmx_traj':
../../../src/tools/gmx_traj.c:525:18: warning: unused variable 'n' [-Wunused-variable]
   int        i,j,n;
                  ^
In file included from ../../../src/tools/gmx_traj.c:49:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_traj.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_traj.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_traj.c:42:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_trjorder.lo ../../../src/tools/gmx_trjorder.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_trjorder.c  -fPIC -DPIC -o .libs/gmx_trjorder.o
In file included from ../../../src/tools/gmx_trjorder.c:49:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_trjorder.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_trjorder.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_trjorder.c:42:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_trjcat.lo ../../../src/tools/gmx_trjcat.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_trjcat.c  -fPIC -DPIC -o .libs/gmx_trjcat.o
../../../src/tools/gmx_trjcat.c: In function 'scan_trj_files':
../../../src/tools/gmx_trjcat.c:78:8: warning: unused variable 't' [-Wunused-variable]
   real t;
        ^
../../../src/tools/gmx_trjcat.c: In function 'gmx_trjcat':
../../../src/tools/gmx_trjcat.c:392:58: warning: unused variable 'last_ok_step' [-Wunused-variable]
   int         earliersteps,nfile_in,nfile_out,*cont_type,last_ok_step;
                                                          ^~~~~~~~~~~~
../../../src/tools/gmx_trjcat.c:388:34: warning: unused variable 'in_file' [-Wunused-variable]
   char        **fnms,**fnms_out,*in_file,*out_file;
                                  ^~~~~~~
../../../src/tools/gmx_trjcat.c:385:19: warning: unused variable 'v' [-Wunused-variable]
   rvec        *x,*v;
                   ^
../../../src/tools/gmx_trjcat.c:385:16: warning: unused variable 'x' [-Wunused-variable]
   rvec        *x,*v;
                ^
../../../src/tools/gmx_trjcat.c:384:53: warning: unused variable 'trjout' [-Wunused-variable]
   int         status,ftpin,i,frame,frame_out,step=0,trjout=0;
                                                     ^~~~~~
../../../src/tools/gmx_trjcat.c:384:22: warning: unused variable 'ftpin' [-Wunused-variable]
   int         status,ftpin,i,frame,frame_out,step=0,trjout=0;
                      ^~~~~
In file included from ../../../src/tools/gmx_trjcat.c:56:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_trjcat.c:56:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_trjcat.c:52:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_trjcat.c:50:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_trjcat.c:46:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_genion.lo ../../../src/tools/gmx_genion.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_genion.c  -fPIC -DPIC -o .libs/gmx_genion.o
../../../src/tools/gmx_genion.c: In function 'insert_ion':
../../../src/tools/gmx_genion.c:72:8: warning: unused variable 'xei' [-Wunused-variable]
   rvec xei,dx;
        ^~~
../../../src/tools/gmx_genion.c:70:29: warning: unused variable 'm' [-Wunused-variable]
   int  i,ii,ei,owater,wlast,m,nw;
                             ^
../../../src/tools/gmx_genion.c:70:23: warning: unused variable 'wlast' [-Wunused-variable]
   int  i,ii,ei,owater,wlast,m,nw;
                       ^~~~~
../../../src/tools/gmx_genion.c:70:16: warning: unused variable 'owater' [-Wunused-variable]
   int  i,ii,ei,owater,wlast,m,nw;
                ^~~~~~
In file included from ../../../src/tools/gmx_genion.c:54:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/tools/gmx_genion.c:51:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_genion.c:48:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_genion.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_genion.c:41:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_genbox.lo ../../../src/tools/gmx_genbox.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_genbox.c  -fPIC -DPIC -o .libs/gmx_genbox.o
../../../src/tools/gmx_genbox.c: In function 'gmx_genbox':
../../../src/tools/gmx_genbox.c:665:11: warning: unused variable 'pbc' [-Wunused-variable]
   t_pbc   pbc;
           ^~~
In file included from ../../../src/tools/gmx_genbox.c:61:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_genbox.c:57:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_genbox.c:55:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_genbox.c:55:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_genbox.c:47:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
../../../src/tools/gmx_genbox.c: In function 'update_top.constprop':
../../../src/tools/gmx_genbox.c:538:19: warning: ' in water
   ' directive writing 10 bytes into a region of size between 1 and 4096 [-Wformat-overflow=]
    sprintf(buf,"%s in water\n",buf2);
                   ^~~~~~~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/tools/gmx_genbox.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 11 and 4106 bytes into a destination of size 4096
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_genpr.lo ../../../src/tools/gmx_genpr.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_genpr.c  -fPIC -DPIC -o .libs/gmx_genpr.o
In file included from ../../../src/tools/gmx_genpr.c:50:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_genpr.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_genpr.c:44:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_genpr.c:42:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_editconf.lo ../../../src/tools/gmx_editconf.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_editconf.c  -fPIC -DPIC -o .libs/gmx_editconf.o
../../../src/tools/gmx_editconf.c: In function 'calc_geom':
../../../src/tools/gmx_editconf.c:103:12: warning: unused variable 'grpnames' [-Wunused-variable]
   char    *grpnames;
            ^~~~~~~~
../../../src/tools/gmx_editconf.c: In function 'set_pdb_conf_bfac':
../../../src/tools/gmx_editconf.c:195:9: warning: unused variable 'out' [-Wunused-variable]
   FILE *out;
         ^~~
../../../src/tools/gmx_editconf.c: In function 'gmx_editconf':
../../../src/tools/gmx_editconf.c:518:35: warning: unused variable 'zcent' [-Wunused-variable]
   real       xs,ys,zs,xcent,ycent,zcent,diam=0,mass=0,d,vdw;
                                   ^~~~~
../../../src/tools/gmx_editconf.c:518:29: warning: unused variable 'ycent' [-Wunused-variable]
   real       xs,ys,zs,xcent,ycent,zcent,diam=0,mass=0,d,vdw;
                             ^~~~~
../../../src/tools/gmx_editconf.c:518:23: warning: unused variable 'xcent' [-Wunused-variable]
   real       xs,ys,zs,xcent,ycent,zcent,diam=0,mass=0,d,vdw;
                       ^~~~~
../../../src/tools/gmx_editconf.c:518:20: warning: unused variable 'zs' [-Wunused-variable]
   real       xs,ys,zs,xcent,ycent,zcent,diam=0,mass=0,d,vdw;
                    ^~
../../../src/tools/gmx_editconf.c:518:17: warning: unused variable 'ys' [-Wunused-variable]
   real       xs,ys,zs,xcent,ycent,zcent,diam=0,mass=0,d,vdw;
                 ^~
../../../src/tools/gmx_editconf.c:518:14: warning: unused variable 'xs' [-Wunused-variable]
   real       xs,ys,zs,xcent,ycent,zcent,diam=0,mass=0,d,vdw;
              ^~
../../../src/tools/gmx_editconf.c:516:38: warning: unused variable 'bCubic' [-Wunused-variable]
   bool       bIndex,bSetSize,bSetAng,bCubic,bDist,bSetCenter;
                                      ^~~~~~
../../../src/tools/gmx_editconf.c:512:30: warning: unused variable 'tindex' [-Wunused-variable]
   atom_id    *index,*sindex,*tindex;
                              ^~~~~~
../../../src/tools/gmx_editconf.c:511:26: warning: unused variable 'tsize' [-Wunused-variable]
   int        isize,ssize,tsize;
                          ^~~~~
../../../src/tools/gmx_editconf.c:456:33: warning: unused variable 'to_diam' [-Wunused-variable]
   static real dist=0.0,rbox=0.0,to_diam=0.0;
                                 ^~~~~~~
../../../src/tools/gmx_editconf.c:456:24: warning: unused variable 'rbox' [-Wunused-variable]
   static real dist=0.0,rbox=0.0,to_diam=0.0;
                        ^~~~
At top level:
../../../src/tools/gmx_editconf.c:456:24: warning: 'rbox' defined but not used [-Wunused-variable]
../../../src/tools/gmx_editconf.c:456:33: warning: 'to_diam' defined but not used [-Wunused-variable]
   static real dist=0.0,rbox=0.0,to_diam=0.0;
                                 ^~~~~~~
../../../src/tools/gmx_editconf.c:79:14: warning: 'pdbtp' defined but not used [-Wunused-variable]
 static char *pdbtp[epdbNR]={"ATOM  ","HETATM"};
              ^~~~~
In file included from ../../../src/tools/gmx_editconf.c:53:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_editconf.c:53:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_editconf.c:49:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_editconf.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_editconf.c:43:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_genconf.lo ../../../src/tools/gmx_genconf.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_genconf.c  -fPIC -DPIC -o .libs/gmx_genconf.o
../../../src/tools/gmx_genconf.c:93:13: warning: 'move_x' defined but not used [-Wunused-function]
 static void move_x(int natoms,rvec x[],matrix box)
             ^~~~~~
In file included from ../../../src/tools/gmx_genconf.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_genconf.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_genconf.c:42:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_genconf.c:40:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_xpm2ps.lo ../../../src/tools/gmx_xpm2ps.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_xpm2ps.c  -fPIC -DPIC -o .libs/gmx_xpm2ps.o
../../../src/tools/gmx_xpm2ps.c: In function 'xpm_mat':
../../../src/tools/gmx_xpm2ps.c:559:14: warning: unused variable 'k' [-Wunused-variable]
   int    i,j,k,x,y,col;
              ^
../../../src/tools/gmx_xpm2ps.c:559:12: warning: unused variable 'j' [-Wunused-variable]
   int    i,j,k,x,y,col;
            ^
../../../src/tools/gmx_xpm2ps.c:558:10: warning: unused variable 'buf' [-Wunused-variable]
   char   buf[100];
          ^~~
../../../src/tools/gmx_xpm2ps.c: In function 'tick_spacing':
../../../src/tools/gmx_xpm2ps.c:599:18: warning: unused variable 'bFive' [-Wunused-variable]
   bool bTryAgain,bFive;
                  ^~~~~
../../../src/tools/gmx_xpm2ps.c: In function 'ps_mat':
../../../src/tools/gmx_xpm2ps.c:644:12: warning: unused variable 'j' [-Wunused-variable]
   int    i,j,x,y,col,leg=0;
            ^
../../../src/tools/gmx_xpm2ps.c: In function 'write_combined_matrix':
../../../src/tools/gmx_xpm2ps.c:919:14: warning: unused variable 'map' [-Wunused-variable]
   t_mapping *map=NULL;
              ^~~
../../../src/tools/gmx_xpm2ps.c: In function 'gmx_xpm2ps':
../../../src/tools/gmx_xpm2ps.c:1127:56: warning: unused variable 'bAdd' [-Wunused-variable]
   static bool bFrame=TRUE,bZeroLine=FALSE,bYonce=FALSE,bAdd=FALSE;
                                                        ^~~~
At top level:
../../../src/tools/gmx_xpm2ps.c:1127:56: warning: 'bAdd' defined but not used [-Wunused-variable]
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_xpm2ps.c:45:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_xpm2ps.c:42:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
../../../src/tools/gmx_xpm2ps.c: In function 'ps_mat':
../../../src/tools/gmx_xpm2ps.c:346:22: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=]
       sprintf(buf,"%g",mat[i].axis_x[j]);
                      ^
In file included from /usr/include/stdio.h:862,
                 from ../../../include/string2.h:56,
                 from ../../../src/tools/gmx_xpm2ps.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 2 and 14 bytes into a destination of size 12
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/tools/gmx_xpm2ps.c:374:22: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=]
       sprintf(buf,"%g",mat[i].axis_y[j]);
                      ^
In file included from /usr/include/stdio.h:862,
                 from ../../../include/string2.h:56,
                 from ../../../src/tools/gmx_xpm2ps.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 2 and 14 bytes into a destination of size 12
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_wheel.lo ../../../src/tools/gmx_wheel.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_wheel.c  -fPIC -DPIC -o .libs/gmx_wheel.o
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_wheel.c:55:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_wheel.c:52:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_wheel.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_wheel.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o editconf.o ../../../src/tools/editconf.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o eneconv.o ../../../src/tools/eneconv.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o genbox.o ../../../src/tools/genbox.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_eneconv.lo ../../../src/tools/gmx_eneconv.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_eneconv.c  -fPIC -DPIC -o .libs/gmx_eneconv.o
../../../src/tools/gmx_eneconv.c: In function 'gmx_eneconv':
../../../src/tools/gmx_eneconv.c:427:14: warning: unused variable 'ok' [-Wunused-variable]
   bool       ok;
              ^~
../../../src/tools/gmx_eneconv.c:426:35: warning: unused variable 'chptr' [-Wunused-variable]
   char       inputstring[STRLEN],*chptr;
                                   ^~~~~
../../../src/tools/gmx_eneconv.c:426:14: warning: unused variable 'inputstring' [-Wunused-variable]
   char       inputstring[STRLEN],*chptr;
              ^~~~~~~~~~~
../../../src/tools/gmx_eneconv.c:425:42: warning: unused variable 't1' [-Wunused-variable]
   real       *readtime,*settime,timestep,t1,tadjust;
                                          ^~
../../../src/tools/gmx_eneconv.c:421:42: warning: unused variable 'j' [-Wunused-variable]
   int        nre,nremax,this_nre,nfile,i,j,kkk,nset,*set=NULL;
                                          ^
At top level:
../../../src/tools/gmx_eneconv.c:101:13: warning: 'same_time' defined but not used [-Wunused-function]
 static bool same_time(real t1,real t2)
             ^~~~~~~~~
In file included from ../../../src/tools/gmx_eneconv.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_eneconv.c:45:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o calcpot.lo ../../../src/tools/calcpot.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/calcpot.c  -fPIC -DPIC -o .libs/calcpot.o
../../../src/tools/calcpot.c: In function 'c_tabpot':
../../../src/tools/calcpot.c:79:8: warning: unused variable 'qqO' [-Wunused-variable]
   real qqO,qj;
        ^~~
../../../src/tools/calcpot.c:78:43: warning: unused variable 'rinv2O' [-Wunused-variable]
   real txO,tyO,tzO,vcO,fsO,qO,rsqO,rinv1O,rinv2O;
                                           ^~~~~~
../../../src/tools/calcpot.c:78:24: warning: unused variable 'fsO' [-Wunused-variable]
   real txO,tyO,tzO,vcO,fsO,qO,rsqO,rinv1O,rinv2O;
                        ^~~
../../../src/tools/calcpot.c:78:20: warning: unused variable 'vcO' [-Wunused-variable]
   real txO,tyO,tzO,vcO,fsO,qO,rsqO,rinv1O,rinv2O;
                    ^~~
../../../src/tools/calcpot.c:78:16: warning: unused variable 'tzO' [-Wunused-variable]
   real txO,tyO,tzO,vcO,fsO,qO,rsqO,rinv1O,rinv2O;
                ^~~
../../../src/tools/calcpot.c:78:12: warning: unused variable 'tyO' [-Wunused-variable]
   real txO,tyO,tzO,vcO,fsO,qO,rsqO,rinv1O,rinv2O;
            ^~~
../../../src/tools/calcpot.c:78:8: warning: unused variable 'txO' [-Wunused-variable]
   real txO,tyO,tzO,vcO,fsO,qO,rsqO,rinv1O,rinv2O;
        ^~~
../../../src/tools/calcpot.c:76:28: warning: unused variable 'fzO' [-Wunused-variable]
   real fxJ,fyJ,fzJ,fxO,fyO,fzO;
                            ^~~
../../../src/tools/calcpot.c:76:24: warning: unused variable 'fyO' [-Wunused-variable]
   real fxJ,fyJ,fzJ,fxO,fyO,fzO;
                        ^~~
../../../src/tools/calcpot.c:76:20: warning: unused variable 'fxO' [-Wunused-variable]
   real fxJ,fyJ,fzJ,fxO,fyO,fzO;
                    ^~~
../../../src/tools/calcpot.c:76:16: warning: unused variable 'fzJ' [-Wunused-variable]
   real fxJ,fyJ,fzJ,fxO,fyO,fzO;
                ^~~
../../../src/tools/calcpot.c:76:12: warning: unused variable 'fyJ' [-Wunused-variable]
   real fxJ,fyJ,fzJ,fxO,fyO,fzO;
            ^~~
../../../src/tools/calcpot.c:76:8: warning: unused variable 'fxJ' [-Wunused-variable]
   real fxJ,fyJ,fzJ,fxO,fyO,fzO;
        ^~~
../../../src/tools/calcpot.c:75:38: warning: unused variable 'ggid' [-Wunused-variable]
   int  ii,k,n,jnr,ii3,nj0,nj1,is3,j3,ggid;
                                      ^~~~
../../../src/tools/calcpot.c:71:50: warning: unused variable 'FF' [-Wunused-variable]
   real r1,r1t,fijC,eps,eps2,Y,F,Fp,Geps,Heps2,VV,FF;
                                                  ^~
../../../src/tools/calcpot.c:71:15: warning: unused variable 'fijC' [-Wunused-variable]
   real r1,r1t,fijC,eps,eps2,Y,F,Fp,Geps,Heps2,VV,FF;
               ^~~~
../../../src/tools/calcpot.c:70:14: warning: unused variable 'two' [-Wunused-variable]
   const real two = 2.000000;
              ^~~
../../../src/tools/calcpot.c: In function 'calc_pot':
../../../src/tools/calcpot.c:176:15: warning: variable 'box_size' set but not used [-Wunused-but-set-variable]
   rvec        box_size;
               ^~~~~~~~
../../../src/tools/calcpot.c: In function 'init_calcpot':
../../../src/tools/calcpot.c:238:12: warning: variable 'box_size' set but not used [-Wunused-but-set-variable]
   rvec     box_size;
            ^~~~~~~~
In file included from ../../../src/tools/calcpot.c:46:
At top level:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/tools/calcpot.c:40:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/calcpot.c:40:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o genconf.o ../../../src/tools/genconf.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o genrestr.o ../../../src/tools/genrestr.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_nmtraj.o ../../../src/tools/g_nmtraj.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o edittop.lo ../../../src/tools/edittop.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/edittop.c  -fPIC -DPIC -o .libs/edittop.o
../../../src/tools/edittop.c: In function 'delete_from_block':
../../../src/tools/edittop.c:104:17: warning: unused variable 'k' [-Wunused-variable]
   int i,i1,j1,j,k;
                 ^
../../../src/tools/edittop.c:104:12: warning: unused variable 'j1' [-Wunused-variable]
   int i,i1,j1,j,k;
            ^~
../../../src/tools/edittop.c: In function 'delete_atom':
../../../src/tools/edittop.c:161:7: warning: unused variable 'k' [-Wunused-variable]
   int k;
       ^
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o trjcat.o ../../../src/tools/trjcat.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o trjconv.o ../../../src/tools/trjconv.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o trjorder.o ../../../src/tools/trjorder.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o wheel.o ../../../src/tools/wheel.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o genion.o ../../../src/tools/genion.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o xpm2ps.o ../../../src/tools/xpm2ps.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o addconf.lo ../../../src/tools/addconf.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/addconf.c  -fPIC -DPIC -o .libs/addconf.o
../../../src/tools/addconf.c: In function 'do_nsgrid':
../../../src/tools/addconf.c:205:14: warning: variable 'box_size' set but not used [-Wunused-but-set-variable]
   rvec       box_size;
              ^~~~~~~~
../../../src/tools/addconf.c: In function 'add_conf':
../../../src/tools/addconf.c:328:23: warning: unused variable 'xpp' [-Wunused-variable]
   rvec       dx,xi,xj,xpp,*x_all,*v_all;
                       ^~~
../../../src/tools/addconf.c:326:34: warning: unused variable 'dz1' [-Wunused-variable]
   int        dx0,dx1,dy0,dy1,dz0,dz1;
                                  ^~~
../../../src/tools/addconf.c:326:30: warning: unused variable 'dz0' [-Wunused-variable]
   int        dx0,dx1,dy0,dy1,dz0,dz1;
                              ^~~
../../../src/tools/addconf.c:326:26: warning: unused variable 'dy1' [-Wunused-variable]
   int        dx0,dx1,dy0,dy1,dz0,dz1;
                          ^~~
../../../src/tools/addconf.c:326:22: warning: unused variable 'dy0' [-Wunused-variable]
   int        dx0,dx1,dy0,dy1,dz0,dz1;
                      ^~~
../../../src/tools/addconf.c:326:18: warning: unused variable 'dx1' [-Wunused-variable]
   int        dx0,dx1,dy0,dy1,dz0,dz1;
                  ^~~
../../../src/tools/addconf.c:326:14: warning: unused variable 'dx0' [-Wunused-variable]
   int        dx0,dx1,dy0,dy1,dz0,dz1;
              ^~~
../../../src/tools/addconf.c:325:44: warning: unused variable 'maxincell' [-Wunused-variable]
   int        prev,resnr,nresadd,d,k,ncells,maxincell;
                                            ^~~~~~~~~
../../../src/tools/addconf.c:325:37: warning: unused variable 'ncells' [-Wunused-variable]
   int        prev,resnr,nresadd,d,k,ncells,maxincell;
                                     ^~~~~~
../../../src/tools/addconf.c:325:35: warning: unused variable 'k' [-Wunused-variable]
   int        prev,resnr,nresadd,d,k,ncells,maxincell;
                                   ^
../../../src/tools/addconf.c:325:33: warning: unused variable 'd' [-Wunused-variable]
   int        prev,resnr,nresadd,d,k,ncells,maxincell;
                                 ^
../../../src/tools/addconf.c:325:19: warning: unused variable 'resnr' [-Wunused-variable]
   int        prev,resnr,nresadd,d,k,ncells,maxincell;
                   ^~~~~
../../../src/tools/addconf.c:324:47: warning: unused variable 'iprot' [-Wunused-variable]
   int        i,j,jj,m,j0,j1,jjj,jnres,jnr,inr,iprot,is1,is2;
                                               ^~~~~
../../../src/tools/addconf.c:324:21: warning: unused variable 'm' [-Wunused-variable]
   int        i,j,jj,m,j0,j1,jjj,jnres,jnr,inr,iprot,is1,is2;
                     ^
../../../src/tools/addconf.c:324:18: warning: unused variable 'jj' [-Wunused-variable]
   int        i,j,jj,m,j0,j1,jjj,jnres,jnr,inr,iprot,is1,is2;
                  ^~
../../../src/tools/addconf.c:322:47: warning: unused variable 'ib2' [-Wunused-variable]
   real       max_vdw,*r_prot,*r_all,n2,r2,ib1,ib2;
                                               ^~~
../../../src/tools/addconf.c:322:43: warning: unused variable 'ib1' [-Wunused-variable]
   real       max_vdw,*r_prot,*r_all,n2,r2,ib1,ib2;
                                           ^~~
At top level:
../../../src/tools/addconf.c:70:13: warning: 'set_margin' defined but not used [-Wunused-function]
 static void set_margin(t_atoms *atoms, rvec *x, real *r)
             ^~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/addconf.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/addconf.c:46:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/tools/addconf.c:42:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/addconf.c:42:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_analyze.o ../../../src/tools/g_analyze.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_anaeig.o ../../../src/tools/g_anaeig.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_angle.o ../../../src/tools/g_angle.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_bond.o ../../../src/tools/g_bond.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_bundle.o ../../../src/tools/g_bundle.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o anadock.o ../../../src/tools/anadock.c
../../../src/tools/anadock.c: In function 'rmsd_dist':
../../../src/tools/anadock.c:197:13: warning: variable 'dist' set but not used [-Wunused-but-set-variable]
   real rmsd,dist;
             ^~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/anadock.c:47:
At top level:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/anadock.c:46:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/anadock.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/anadock.c:41:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
../../../src/tools/anadock.c: In function 'main':
../../../src/tools/anadock.c:110:22: warning: '%d' directive writing between 1 and 10 bytes into a region of size between 0 and 255 [-Wformat-overflow=]
     sprintf(name,"%s_%d.pdb",buf,i+1);
                      ^~
../../../src/tools/anadock.c:110:18: note: directive argument in the range [1, 2147483647]
     sprintf(name,"%s_%d.pdb",buf,i+1);
                  ^~~~~~~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../include/typedefs.h:52,
                 from ../../../include/confio.h:44,
                 from ../../../src/tools/anadock.c:40:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 7 and 271 bytes into a destination of size 256
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_wham.lo ../../../src/tools/gmx_wham.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_wham.c  -fPIC -DPIC -o .libs/gmx_wham.o
In file included from ../../../src/tools/gmx_wham.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_wham.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_wham.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_wham.c:44:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
../../../src/tools/gmx_wham.c: In function 'open_pdo_pipe':
../../../src/tools/gmx_wham.c:1201:27: warning: ' -c < ' directive writing 6 bytes into a region of size between 1 and 1024 [-Wformat-overflow=]
         sprintf(Buffer,"%s -c < %s",gunzip,fn);
                           ^~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../src/tools/gmx_wham.c:37:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 7 or more bytes (assuming 1030) into a destination of size 1024
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_cluster.o ../../../src/tools/g_cluster.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_confrms.o ../../../src/tools/g_confrms.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_chi.o ../../../src/tools/g_chi.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_current.o ../../../src/tools/g_current.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_density.o ../../../src/tools/g_density.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_covar.o ../../../src/tools/g_covar.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_densmap.o ../../../src/tools/g_densmap.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_dih.o ../../../src/tools/g_dih.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_dielectric.o ../../../src/tools/g_dielectric.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_helixorient.o ../../../src/tools/g_helixorient.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_disre.o ../../../src/tools/g_disre.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_dipoles.o ../../../src/tools/g_dipoles.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_dist.o ../../../src/tools/g_dist.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_dyndom.o ../../../src/tools/g_dyndom.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_principal.o ../../../src/tools/g_principal.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_enemat.o ../../../src/tools/g_enemat.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_energy.o ../../../src/tools/g_energy.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_lie.o ../../../src/tools/g_lie.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_filter.o ../../../src/tools/g_filter.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_h2order.o ../../../src/tools/g_h2order.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_vanhove.lo ../../../src/tools/gmx_vanhove.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_vanhove.c  -fPIC -DPIC -o .libs/gmx_vanhove.o
In file included from ../../../src/tools/gmx_vanhove.c:56:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/tools/gmx_vanhove.c:51:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_vanhove.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_vanhove.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_hbond.o ../../../src/tools/g_hbond.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_gyrate.o ../../../src/tools/g_gyrate.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_helix.o ../../../src/tools/g_helix.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_msd.o ../../../src/tools/g_msd.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o mk_angndx.o ../../../src/tools/mk_angndx.c
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/mk_angndx.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/mk_angndx.c:42:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_mindist.o ../../../src/tools/g_mindist.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_nmeig.o ../../../src/tools/g_nmeig.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_order.o ../../../src/tools/g_order.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_morph.o ../../../src/tools/g_morph.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_nmens.o ../../../src/tools/g_nmens.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_rama.o ../../../src/tools/g_rama.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_polystat.o ../../../src/tools/g_polystat.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_potential.o ../../../src/tools/g_potential.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_rmsdist.o ../../../src/tools/g_rmsdist.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_rdf.o ../../../src/tools/g_rdf.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o gmx_trjconv.lo ../../../src/tools/gmx_trjconv.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_trjconv.c  -fPIC -DPIC -o .libs/gmx_trjconv.o
../../../src/tools/gmx_trjconv.c: In function 'calc_pbc_cluster':
../../../src/tools/gmx_trjconv.c:89:34: warning: unused variable 'is' [-Wunused-variable]
   int     m,i,j,j0,j1,jj,ai,iter,is;
                                  ^~
../../../src/tools/gmx_trjconv.c: In function 'put_molecule_com_in_box':
../../../src/tools/gmx_trjconv.c:252:29: warning: unused variable 'dx' [-Wunused-variable]
   rvec    com,new_com,shift,dx,box_center;
                             ^~
../../../src/tools/gmx_trjconv.c: In function 'put_residue_com_in_box':
../../../src/tools/gmx_trjconv.c:303:37: warning: variable 'res_nat' set but not used [-Wunused-but-set-variable]
   atom_id i, j, res_start, res_end, res_nat;
                                     ^~~~~~~
../../../src/tools/gmx_trjconv.c: In function 'gmx_trjconv':
../../../src/tools/gmx_trjconv.c:726:16: warning: unused variable 'xdr' [-Wunused-variable]
   int          xdr=0;
                ^~~
../../../src/tools/gmx_trjconv.c:725:42: warning: unused variable 'command' [-Wunused-variable]
   char         top_title[256],title[256],command[256],filemode[5];
                                          ^~~~~~~
../../../src/tools/gmx_trjconv.c:715:21: warning: variable 'bFitXY' set but not used [-Wunused-but-set-variable]
   bool         bFit,bFitXY,bPFit,bReset;
                     ^~~~~~
../../../src/tools/gmx_trjconv.c:707:25: warning: unused variable 'gn_rms' [-Wunused-variable]
   char         *gn_fit,*gn_rms;
                         ^~~~~~
../../../src/tools/gmx_trjconv.c:706:26: warning: unused variable 'ind_rms' [-Wunused-variable]
   atom_id      *ind_fit,*ind_rms;
                          ^~~~~~~
../../../src/tools/gmx_trjconv.c:705:21: warning: unused variable 'irms' [-Wunused-variable]
   int          ifit,irms,my_clust=-1;
                     ^~~~
../../../src/tools/gmx_trjconv.c:695:55: warning: unused variable 'nre' [-Wunused-variable]
   int          m,i,d,frame,outframe,natoms,nout,ncent,nre,newstep=0,model_nr;
                                                       ^~~
../../../src/tools/gmx_trjconv.c:694:23: warning: unused variable 'lambda' [-Wunused-variable]
   real         xtcpr, lambda,*w_rls=NULL;
                       ^~~~~~
../../../src/tools/gmx_trjconv.c:694:16: warning: unused variable 'xtcpr' [-Wunused-variable]
   real         xtcpr, lambda,*w_rls=NULL;
                ^~~~~
../../../src/tools/gmx_trjconv.c:693:49: warning: unused variable 'dx' [-Wunused-variable]
   rvec         *xp=NULL,x_shift,hbox,box_center,dx;
                                                 ^~
../../../src/tools/gmx_trjconv.c:693:38: warning: unused variable 'box_center' [-Wunused-variable]
   rvec         *xp=NULL,x_shift,hbox,box_center,dx;
                                      ^~~~~~~~~~
In file included from ../../../src/tools/gmx_trjconv.c:57:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_trjconv.c:57:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_trjconv.c:53:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_trjconv.c:51:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_trjconv.c:47:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
../../../src/tools/gmx_trjconv.c: In function 'gmx_trjconv':
../../../src/tools/gmx_trjconv.c:1325:46: warning: '%s' directive writing up to 255 bytes into a region of size 233 [-Wformat-overflow=]
        sprintf(title,"Generated by trjconv : %s t= %9.5f",
                                              ^~
         top_title,fr.time);
         ~~~~~~~~~                             
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../include/typedefs.h:52,
                 from ../../../include/macros.h:49,
                 from ../../../src/tools/gmx_trjconv.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 37 and 599 bytes into a destination of size 256
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/tools/gmx_trjconv.c:1336:20: warning: ' t= ' directive writing 4 bytes into a region of size between 1 and 256 [-Wformat-overflow=]
   sprintf(title,"%s t= %9.5f",top_title,frout.time);
                    ^~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../include/typedefs.h:52,
                 from ../../../include/macros.h:49,
                 from ../../../src/tools/gmx_trjconv.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 14 and 576 bytes into a destination of size 256
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_rms.o ../../../src/tools/g_rms.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_rotacf.o ../../../src/tools/g_rotacf.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_sas.o ../../../src/tools/g_sas.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_sgangle.o ../../../src/tools/g_sgangle.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_sorient.o ../../../src/tools/g_sorient.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_rmsf.o ../../../src/tools/g_rmsf.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_saltbr.o ../../../src/tools/g_saltbr.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_spatial.o ../../../src/tools/g_spatial.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_sham.o ../../../src/tools/g_sham.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_spol.o ../../../src/tools/g_spol.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_traj.o ../../../src/tools/g_traj.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_sdf.o ../../../src/tools/g_sdf.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_vanhove.o ../../../src/tools/g_vanhove.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_mdmat.o ../../../src/tools/g_mdmat.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_wham.o ../../../src/tools/g_wham.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_tcaf.o ../../../src/tools/g_tcaf.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_kinetics.o ../../../src/tools/g_kinetics.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_velacc.o ../../../src/tools/g_velacc.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o g_clustsize.o ../../../src/tools/g_clustsize.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o make_edi.o ../../../src/tools/make_edi.c
../../../src/tools/make_edi.c: In function 'sscan_list':
../../../src/tools/make_edi.c:185:14: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
              else status=sError; break;
              ^~~~
../../../src/tools/make_edi.c:185:34: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else'
              else status=sError; break;
                                  ^~~~~
../../../src/tools/make_edi.c: In function 'main':
../../../src/tools/make_edi.c:640:10: warning: variable 'bTop' set but not used [-Wunused-but-set-variable]
     bool bTop, bFit1;
          ^~~~
In file included from ../../../src/tools/make_edi.c:56:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/tools/make_edi.c:52:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/make_edi.c:50:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/make_edi.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/make_edi.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o sigeps.o ../../../src/tools/sigeps.c
../../../src/tools/sigeps.c: In function 'main':
../../../src/tools/sigeps.c:106:42: warning: unused variable 'pp' [-Wunused-variable]
   real      qq,x,oldx,minimum,mval,dp[2],pp[2];
                                          ^~
In file included from ../../../src/tools/sigeps.c:50:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/sigeps.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/sigeps.c:47:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/tools/sigeps.c:44:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/sigeps.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o make_ndx.o ../../../src/tools/make_ndx.c
In file included from ../../../src/tools/make_ndx.c:52:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/make_ndx.c:52:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/make_ndx.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/make_ndx.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
../../../src/tools/make_ndx.c: In function 'main':
../../../src/tools/make_ndx.c:994:20: warning: '_&_' directive writing 3 bytes into a region of size between 1 and 4096 [-Wformat-overflow=]
   sprintf(gname,"%s_&_%s",gname1,gname2);
                    ^~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/tools/make_ndx.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 4 and 8194 bytes into a destination of size 4096
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/tools/make_ndx.c:990:21: warning: '%s' directive writing up to 4095 bytes into a region of size between 0 and 4095 [-Wformat-overflow=]
   sprintf(gname,"%s_%s",gname1,gname2);
                     ^~         ~~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/tools/make_ndx.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 2 and 8192 bytes into a destination of size 4096
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -version-info 5:0:0 -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o libgmxana_mpi_d.la -rpath /usr/lib autocorr.lo expfit.lo polynomials.lo levenmar.lo anadih.lo pp2shift.lo dlist.lo eigio.lo lsq.lo cmat.lo eigensolver.lo nsc.lo hxprops.lo fitahx.lo gmx_analyze.lo gmx_anaeig.lo gmx_angle.lo gmx_bond.lo gmx_bundle.lo gmx_chi.lo gmx_cluster.lo gmx_confrms.lo gmx_covar.lo gmx_current.lo gmx_density.lo gmx_densmap.lo gmx_dih.lo gmx_dielectric.lo gmx_kinetics.lo gmx_spatial.lo gmx_dipoles.lo gmx_disre.lo gmx_dist.lo gmx_dyndom.lo gmx_enemat.lo gmx_energy.lo gmx_lie.lo gmx_filter.lo gmx_gyrate.lo gmx_h2order.lo gmx_hbond.lo gmx_helix.lo gmx_mindist.lo gmx_msd.lo gmx_morph.lo gmx_nmeig.lo gmx_nmens.lo gmx_order.lo gmx_principal.lo gmx_polystat.lo gmx_potential.lo gmx_rama.lo gmx_rdf.lo gmx_rms.lo gmx_rmsdist.lo gmx_rmsf.lo gmx_rotacf.lo gmx_saltbr.lo gmx_sas.lo gmx_sdf.lo gmx_sgangle.lo gmx_sorient.lo gmx_spol.lo gmx_tcaf.lo gmx_traj.lo gmx_velacc.lo gmx_helixorient.lo gmx_clustsize.lo gmx_mdmat.lo gmx_wham.lo correl.lo gmx_sham.lo gmx_nmtraj.lo gmx_trjconv.lo gmx_trjcat.lo gmx_trjorder.lo gmx_xpm2ps.lo gmx_editconf.lo gmx_genbox.lo gmx_genion.lo gmx_genconf.lo gmx_genpr.lo gmx_eneconv.lo gmx_vanhove.lo gmx_wheel.lo addconf.lo calcpot.lo edittop.lo ../gmxlib/libgmx_mpi_d.la	../mdlib/libmd_mpi_d.la	 -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
mpicc -shared  .libs/autocorr.o .libs/expfit.o .libs/polynomials.o .libs/levenmar.o .libs/anadih.o .libs/pp2shift.o .libs/dlist.o .libs/eigio.o .libs/lsq.o .libs/cmat.o .libs/eigensolver.o .libs/nsc.o .libs/hxprops.o .libs/fitahx.o .libs/gmx_analyze.o .libs/gmx_anaeig.o .libs/gmx_angle.o .libs/gmx_bond.o .libs/gmx_bundle.o .libs/gmx_chi.o .libs/gmx_cluster.o .libs/gmx_confrms.o .libs/gmx_covar.o .libs/gmx_current.o .libs/gmx_density.o .libs/gmx_densmap.o .libs/gmx_dih.o .libs/gmx_dielectric.o .libs/gmx_kinetics.o .libs/gmx_spatial.o .libs/gmx_dipoles.o .libs/gmx_disre.o .libs/gmx_dist.o .libs/gmx_dyndom.o .libs/gmx_enemat.o .libs/gmx_energy.o .libs/gmx_lie.o .libs/gmx_filter.o .libs/gmx_gyrate.o .libs/gmx_h2order.o .libs/gmx_hbond.o .libs/gmx_helix.o .libs/gmx_mindist.o .libs/gmx_msd.o .libs/gmx_morph.o .libs/gmx_nmeig.o .libs/gmx_nmens.o .libs/gmx_order.o .libs/gmx_principal.o .libs/gmx_polystat.o .libs/gmx_potential.o .libs/gmx_rama.o .libs/gmx_rdf.o .libs/gmx_rms.o .libs/gmx_rmsdist.o .libs/gmx_rmsf.o .libs/gmx_rotacf.o .libs/gmx_saltbr.o .libs/gmx_sas.o .libs/gmx_sdf.o .libs/gmx_sgangle.o .libs/gmx_sorient.o .libs/gmx_spol.o .libs/gmx_tcaf.o .libs/gmx_traj.o .libs/gmx_velacc.o .libs/gmx_helixorient.o .libs/gmx_clustsize.o .libs/gmx_mdmat.o .libs/gmx_wham.o .libs/correl.o .libs/gmx_sham.o .libs/gmx_nmtraj.o .libs/gmx_trjconv.o .libs/gmx_trjcat.o .libs/gmx_trjorder.o .libs/gmx_xpm2ps.o .libs/gmx_editconf.o .libs/gmx_genbox.o .libs/gmx_genion.o .libs/gmx_genconf.o .libs/gmx_genpr.o .libs/gmx_eneconv.o .libs/gmx_vanhove.o .libs/gmx_wheel.o .libs/addconf.o .libs/calcpot.o .libs/edittop.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/lib/openmpi/lib ../gmxlib/.libs/libgmx_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so  -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wl,-Rpath:/usr/lib/openmpi/lib -Wl,-soname -Wl,libgmxana_mpi_d.so.5 -o .libs/libgmxana_mpi_d.so.5.0.0
(cd .libs && rm -f libgmxana_mpi_d.so.5 && ln -s libgmxana_mpi_d.so.5.0.0 libgmxana_mpi_d.so.5)
(cd .libs && rm -f libgmxana_mpi_d.so && ln -s libgmxana_mpi_d.so.5.0.0 libgmxana_mpi_d.so)
creating libgmxana_mpi_d.la
(cd .libs && rm -f libgmxana_mpi_d.la && ln -s ../libgmxana_mpi_d.la libgmxana_mpi_d.la)
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_nmtraj g_nmtraj.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/eigio.o .libs/gmx_nmtraj.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_nmtraj g_nmtraj.o .libs/eigio.o .libs/gmx_nmtraj.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_nmtraj
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o editconf editconf.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_editconf.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/editconf editconf.o .libs/gmx_editconf.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating editconf
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o make_ndx make_ndx.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/make_ndx make_ndx.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating make_ndx
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o do_dssp do_dssp.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/do_dssp do_dssp.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating do_dssp
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o genbox genbox.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/addconf.o .libs/gmx_genbox.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/genbox genbox.o .libs/addconf.o .libs/gmx_genbox.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating genbox
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o eneconv eneconv.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_eneconv.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/eneconv eneconv.o .libs/gmx_eneconv.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating eneconv
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o genconf genconf.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_genconf.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/genconf genconf.o .libs/gmx_genconf.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating genconf
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o genrestr genrestr.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_genpr.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/genrestr genrestr.o .libs/gmx_genpr.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating genrestr
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o mk_angndx mk_angndx.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/mk_angndx mk_angndx.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating mk_angndx
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o trjcat trjcat.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_trjcat.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/trjcat trjcat.o .libs/gmx_trjcat.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating trjcat
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o trjconv trjconv.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_trjconv.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/trjconv trjconv.o .libs/gmx_trjconv.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating trjconv
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o wheel wheel.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_wheel.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/wheel wheel.o .libs/gmx_wheel.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating wheel
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o trjorder trjorder.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_trjorder.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/trjorder trjorder.o .libs/gmx_trjorder.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating trjorder
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o genion genion.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/calcpot.o .libs/gmx_genion.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/genion genion.o .libs/calcpot.o .libs/gmx_genion.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating genion
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o xpm2ps xpm2ps.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_xpm2ps.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/xpm2ps xpm2ps.o .libs/gmx_xpm2ps.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating xpm2ps
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o anadock anadock.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/lsq.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/anadock anadock.o .libs/lsq.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating anadock
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o make_edi make_edi.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/eigio.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/make_edi make_edi.o .libs/eigio.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating make_edi
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_analyze g_analyze.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_hbond.o .libs/gmx_analyze.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_analyze g_analyze.o .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_hbond.o .libs/gmx_analyze.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_analyze
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_anaeig g_anaeig.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/eigio.o .libs/gmx_anaeig.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_anaeig g_anaeig.o .libs/eigio.o .libs/gmx_anaeig.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_anaeig
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_bond g_bond.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/lsq.o .libs/gmx_bond.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_bond g_bond.o .libs/lsq.o .libs/gmx_bond.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_bond
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_angle g_angle.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/dlist.o .libs/anadih.o .libs/gmx_angle.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_angle g_angle.o .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/dlist.o .libs/anadih.o .libs/gmx_angle.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_angle
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_bundle g_bundle.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_bundle.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_bundle g_bundle.o .libs/gmx_bundle.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_bundle
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_chi g_chi.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/pp2shift.o .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/dlist.o .libs/anadih.o .libs/gmx_chi.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_chi g_chi.o .libs/pp2shift.o .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/dlist.o .libs/anadih.o .libs/gmx_chi.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_chi
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_cluster g_cluster.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/eigensolver.o .libs/cmat.o .libs/gmx_cluster.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_cluster g_cluster.o .libs/eigensolver.o .libs/cmat.o .libs/gmx_cluster.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_cluster
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_confrms g_confrms.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_confrms.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_confrms g_confrms.o .libs/gmx_confrms.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_confrms
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_covar g_covar.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/eigensolver.o .libs/eigio.o .libs/gmx_covar.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_covar g_covar.o .libs/eigensolver.o .libs/eigio.o .libs/gmx_covar.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_covar
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_current g_current.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_current.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_current g_current.o .libs/gmx_current.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_current
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_density g_density.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_density.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_density g_density.o .libs/gmx_density.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_density
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_dielectric g_dielectric.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/gmx_dielectric.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_dielectric g_dielectric.o .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/gmx_dielectric.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_dielectric
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_helixorient g_helixorient.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_helixorient.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_helixorient g_helixorient.o .libs/gmx_helixorient.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_helixorient
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_dih g_dih.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_dih.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_dih g_dih.o .libs/gmx_dih.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_dih
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_densmap g_densmap.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_densmap.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_densmap g_densmap.o .libs/gmx_densmap.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_densmap
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_principal g_principal.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_principal.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_principal g_principal.o .libs/gmx_principal.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_principal
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_dipoles g_dipoles.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/lsq.o .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/gmx_dipoles.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_dipoles g_dipoles.o .libs/lsq.o .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/gmx_dipoles.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_dipoles
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_disre g_disre.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_disre.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_disre g_disre.o .libs/gmx_disre.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_disre
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_dyndom g_dyndom.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_dyndom.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_dyndom g_dyndom.o .libs/gmx_dyndom.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_dyndom
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_enemat g_enemat.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_enemat.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_enemat g_enemat.o .libs/gmx_enemat.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_enemat
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_dist g_dist.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_dist.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_dist g_dist.o .libs/gmx_dist.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_dist
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_energy g_energy.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/gmx_energy.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_energy g_energy.o .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/gmx_energy.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_energy
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_lie g_lie.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_lie.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_lie g_lie.o .libs/gmx_lie.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_lie
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_filter g_filter.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_filter.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_filter g_filter.o .libs/gmx_filter.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_filter
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_gyrate g_gyrate.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/gmx_gyrate.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_gyrate g_gyrate.o .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/gmx_gyrate.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_gyrate
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_h2order g_h2order.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_h2order.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_h2order g_h2order.o .libs/gmx_h2order.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_h2order
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_mindist g_mindist.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_mindist.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_mindist g_mindist.o .libs/gmx_mindist.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_mindist
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_msd g_msd.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/lsq.o .libs/gmx_msd.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_msd g_msd.o .libs/lsq.o .libs/gmx_msd.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_msd
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_helix g_helix.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/hxprops.o .libs/fitahx.o .libs/gmx_helix.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_helix g_helix.o .libs/hxprops.o .libs/fitahx.o .libs/gmx_helix.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_helix
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_morph g_morph.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_morph.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_morph g_morph.o .libs/gmx_morph.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_morph
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_hbond g_hbond.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_hbond.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_hbond g_hbond.o .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_hbond.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_hbond
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_nmeig g_nmeig.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/eigensolver.o .libs/eigio.o .libs/gmx_nmeig.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_nmeig g_nmeig.o .libs/eigensolver.o .libs/eigio.o .libs/gmx_nmeig.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_nmeig
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_nmens g_nmens.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/eigensolver.o .libs/eigio.o .libs/gmx_nmens.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_nmens g_nmens.o .libs/eigensolver.o .libs/eigio.o .libs/gmx_nmens.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_nmens
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_potential g_potential.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_potential.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_potential g_potential.o .libs/gmx_potential.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_potential
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_order g_order.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_order.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_order g_order.o .libs/gmx_order.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_order
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_polystat g_polystat.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_polystat.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_polystat g_polystat.o .libs/gmx_polystat.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_polystat
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_rama g_rama.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_rama.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_rama g_rama.o .libs/gmx_rama.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_rama
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_rdf g_rdf.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_rdf.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_rdf g_rdf.o .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_rdf.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_rdf
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_rms g_rms.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/cmat.o .libs/gmx_rms.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_rms g_rms.o .libs/cmat.o .libs/gmx_rms.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_rms
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_rmsdist g_rmsdist.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_rmsdist.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_rmsdist g_rmsdist.o .libs/gmx_rmsdist.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_rmsdist
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_saltbr g_saltbr.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_saltbr.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_saltbr g_saltbr.o .libs/gmx_saltbr.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_saltbr
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_rmsf g_rmsf.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/eigensolver.o .libs/gmx_rmsf.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_rmsf g_rmsf.o .libs/eigensolver.o .libs/gmx_rmsf.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_rmsf
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_rotacf g_rotacf.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_rotacf.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_rotacf g_rotacf.o .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_rotacf.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_rotacf
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_sas g_sas.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/nsc.o .libs/gmx_sas.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_sas g_sas.o .libs/nsc.o .libs/gmx_sas.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_sas
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_sgangle g_sgangle.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_sgangle.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_sgangle g_sgangle.o .libs/gmx_sgangle.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_sgangle
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_sham g_sham.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_sham.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_sham g_sham.o .libs/gmx_sham.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_sham
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_sorient g_sorient.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_sorient.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_sorient g_sorient.o .libs/gmx_sorient.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_sorient
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_spol g_spol.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_spol.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_spol g_spol.o .libs/gmx_spol.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_spol
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_traj g_traj.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_traj.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_traj g_traj.o .libs/gmx_traj.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_traj
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_spatial g_spatial.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_spatial.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_spatial g_spatial.o .libs/gmx_spatial.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_spatial
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_vanhove g_vanhove.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_vanhove.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_vanhove g_vanhove.o .libs/gmx_vanhove.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_vanhove
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_sdf g_sdf.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_sdf.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_sdf g_sdf.o .libs/gmx_sdf.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_sdf
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_tcaf g_tcaf.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_tcaf.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_tcaf g_tcaf.o .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_tcaf.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_tcaf
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_velacc g_velacc.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_velacc.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_velacc g_velacc.o .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_velacc.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_velacc
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_clustsize g_clustsize.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_clustsize.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_clustsize g_clustsize.o .libs/gmx_clustsize.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_clustsize
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_mdmat g_mdmat.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_mdmat.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_mdmat g_mdmat.o .libs/gmx_mdmat.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_mdmat
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_wham g_wham.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_wham.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_wham g_wham.o .libs/gmx_wham.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_wham
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o sigeps sigeps.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/sigeps sigeps.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating sigeps
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o g_kinetics g_kinetics.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_kinetics.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_kinetics g_kinetics.o .libs/gmx_kinetics.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-pal.so /usr/lib/openmpi/lib/libopen-rte.so 
creating g_kinetics
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
Making all in ngmx
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o popup.o ../../../src/ngmx/popup.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o ngmx.o ../../../src/ngmx/ngmx.c
../../../src/ngmx/ngmx.c: In function 'dump_xw':
../../../src/ngmx/ngmx.c:68:8: warning: variable 'rc' set but not used [-Wunused-but-set-variable]
   int  rc;
        ^~
../../../src/ngmx/ngmx.c: In function 'init_gmx':
../../../src/ngmx/ngmx.c:354:35: warning: unused variable 'nre' [-Wunused-variable]
   int                  step,natom,nre,natom_trx;
                                   ^~~
At top level:
../../../src/ngmx/ngmx.c:65:13: warning: 'dump_xw' defined but not used [-Wunused-function]
 static void dump_xw(char *dispname,Window w,char *fn)
             ^~~~~~~
In file included from ../../../src/ngmx/ngmx.c:52:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/ngmx/ngmx.c:49:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o xutil.o ../../../src/ngmx/xutil.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o xmb.o ../../../src/ngmx/xmb.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o fgrid.o ../../../src/ngmx/fgrid.c
../../../src/ngmx/fgrid.c: In function 'GetBuf':
../../../src/ngmx/fgrid.c:101:7: warning: variable 'rc' set but not used [-Wunused-but-set-variable]
   int rc;
       ^~
../../../src/ngmx/fgrid.c: In function 'FGridFromFile':
../../../src/ngmx/fgrid.c:346:8: warning: unused variable 'newinfile' [-Wunused-variable]
   char newinfile[STRLEN];
        ^~~~~~~~~
../../../src/ngmx/fgrid.c:345:9: warning: unused variable 'gmxlib' [-Wunused-variable]
   char *gmxlib;
         ^~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o pulldown.o ../../../src/ngmx/pulldown.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o x11.o ../../../src/ngmx/x11.c
../../../src/ngmx/x11.c:265:13: warning: 'Xrm' defined but not used [-Wunused-function]
 static void Xrm(int *argc, char *argv[])
             ^~~
../../../src/ngmx/x11.c:132:13: warning: 'TestEvent' defined but not used [-Wunused-function]
 static Bool TestEvent(Display *disp,XEvent *event,char *arg)
             ^~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o xdlghi.o ../../../src/ngmx/xdlghi.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o xdlgitem.o ../../../src/ngmx/xdlgitem.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o buttons.o ../../../src/ngmx/buttons.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nleg.o ../../../src/ngmx/nleg.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o logo.o ../../../src/ngmx/logo.c
In file included from ../../../src/ngmx/logo.c:45:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o manager.o ../../../src/ngmx/manager.c
../../../src/ngmx/manager.c: In function 'set_file':
../../../src/ngmx/manager.c:182:18: warning: unused variable 'idum' [-Wunused-variable]
   int          i,idum;
                  ^~~~
../../../src/ngmx/manager.c: In function 'step_man':
../../../src/ngmx/manager.c:312:15: warning: unused variable 'dum' [-Wunused-variable]
   int         dum;
               ^~~
../../../src/ngmx/manager.c:311:15: warning: unused variable 'rdum' [-Wunused-variable]
   real        rdum;
               ^~~~
In file included from ../../../src/ngmx/manager.c:57:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/ngmx/manager.c:56:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/ngmx/manager.c:55:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/ngmx/manager.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
../../../src/ngmx/manager.c: In function 'set_file':
../../../src/ngmx/manager.c:213:20: warning: '%s' directive writing up to 255 bytes into a region of size 254 [-Wformat-overflow=]
   sprintf(buf,"%s: %s",*man->top.name,quote);
                    ^~                 ~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/ngmx/manager.c:40:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 3 or more bytes (assuming 258) into a destination of size 256
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o xdlg.o ../../../src/ngmx/xdlg.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o dialogs.o ../../../src/ngmx/dialogs.c
../../../src/ngmx/dialogs.c:373:13: warning: 'in_set' defined but not used [-Wunused-function]
 static bool in_set(int i,int n,int set[])
             ^~~~~~
../../../src/ngmx/dialogs.c:240:13: warning: 'Extract' defined but not used [-Wunused-function]
 static void Extract(t_dlg *dlg,int ID,char *buf)
             ^~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o nmol.o ../../../src/ngmx/nmol.c
../../../src/ngmx/nmol.c: In function 'draw_box':
../../../src/ngmx/nmol.c:422:23: warning: unused variable 'tv2' [-Wunused-variable]
   iv2  vec2[NCUCEDGE],tv2;
                       ^~~
In file included from ../../../src/ngmx/nmol.c:51:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/ngmx/nmol.c:51:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o molps.o ../../../src/ngmx/molps.c
../../../src/ngmx/molps.c: In function 'ps_draw_mol':
../../../src/ngmx/molps.c:204:15: warning: unused variable 'ntime' [-Wunused-variable]
   static int  ntime=0;
               ^~~~~
../../../src/ngmx/molps.c:203:15: warning: unused variable 'tstr' [-Wunused-variable]
   static char tstr[2][20];
               ^~~~
At top level:
../../../src/ngmx/molps.c:203:15: warning: 'tstr' defined but not used [-Wunused-variable]
../../../src/ngmx/molps.c:204:15: warning: 'ntime' defined but not used [-Wunused-variable]
   static int  ntime=0;
               ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o filter.o ../../../src/ngmx/filter.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o xrama.o ../../../src/ngmx/xrama.c
../../../src/ngmx/xrama.c: In function 'main':
../../../src/ngmx/xrama.c:319:15: warning: variable 'ramatop' set but not used [-Wunused-but-set-variable]
   t_topology *ramatop;
               ^~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/ngmx/xrama.c:50:
At top level:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/ngmx/xrama.c:44:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -c -o highway.o ../../../src/ngmx/highway.c
In file included from ../../../include/statutil.h:51,
                 from ../../../src/ngmx/highway.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/ngmx/highway.c:46:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o ngmx ngmx.o xutil.o xmb.o x11.o xdlghi.o fgrid.o xdlgitem.o popup.o pulldown.o xdlg.o manager.o buttons.o nmol.o nleg.o dialogs.o logo.o filter.o molps.o ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
mkdir .libs
mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -o .libs/ngmx ngmx.o xutil.o xmb.o x11.o xdlghi.o fgrid.o xdlgitem.o popup.o pulldown.o xdlg.o manager.o buttons.o nmol.o nleg.o dialogs.o logo.o filter.o molps.o  -lgslcblas ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath 
creating ngmx
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o xrama xrama.o xutil.o xmb.o x11.o xdlghi.o fgrid.o xdlgitem.o popup.o pulldown.o xdlg.o manager.o buttons.o nmol.o nleg.o dialogs.o logo.o filter.o molps.o ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -o .libs/xrama xrama.o xutil.o xmb.o x11.o xdlghi.o fgrid.o xdlgitem.o popup.o pulldown.o xdlg.o manager.o buttons.o nmol.o nleg.o dialogs.o logo.o filter.o molps.o  -lgslcblas ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath 
creating xrama
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o highway highway.o xutil.o xmb.o x11.o xdlghi.o fgrid.o xdlgitem.o popup.o pulldown.o xdlg.o manager.o buttons.o nmol.o nleg.o dialogs.o logo.o filter.o molps.o ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -o .libs/highway highway.o xutil.o xmb.o x11.o xdlghi.o fgrid.o xdlgitem.o popup.o pulldown.o xdlg.o manager.o buttons.o nmol.o nleg.o dialogs.o logo.o filter.o molps.o  -lgslcblas ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath 
creating highway
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
Making all in contrib
make[3]: Nothing to be done for 'all'.
Making all in admin
make[1]: Nothing to be done for 'all'.
Making all in scripts
make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/scripts'
cat ../../scripts/GMXRC.in | sed 's,@bindir\@,/usr/bin,' > GMXRC
make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/scripts'
make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/scripts'
cat ../../scripts/GMXRC.zsh.in | sed 's,@libdir\@,/usr/lib,' | \
sed 's,@bindir\@,/usr/bin,' | \
sed 's,@datadir\@,/usr/share,' | \
sed 's,@mandir\@,/usr/share/man,'  > GMXRC.zsh
make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/scripts'
make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/scripts'
cat ../../scripts/GMXRC.csh.in | sed 's,@libdir\@,/usr/lib,' | \
sed 's,@bindir\@,/usr/bin,' | \
sed 's,@datadir\@,/usr/share,' | \
sed 's,@mandir\@,/usr/share/man,'  > GMXRC.csh
make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/scripts'
make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/scripts'
cat ../../scripts/GMXRC.bash.in | sed 's,@libdir\@,/usr/lib,' | \
sed 's,@bindir\@,/usr/bin,' | \
sed 's,@datadir\@,/usr/share,' | \
sed 's,@mandir\@,/usr/share/man,'  > GMXRC.bash
make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/scripts'
Making all in share
Making all in top
make[2]: Nothing to be done for 'all'.
Making all in tutor
Making all in nmr1
make[3]: Nothing to be done for 'all'.
Making all in nmr2
make[3]: Nothing to be done for 'all'.
Making all in speptide
make[3]: Nothing to be done for 'all'.
Making all in water
make[3]: Nothing to be done for 'all'.
Making all in gmxdemo
make[3]: Nothing to be done for 'all'.
Making all in methanol
make[3]: Nothing to be done for 'all'.
Making all in mixed
make[3]: Nothing to be done for 'all'.
make[3]: Nothing to be done for 'all-am'.
Making all in template
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/template'
cat ../../../share/template/Template.mak | \
sed 's,@LDFLAGS\@,-L/usr/lib  -lgslcblas ,' | \
sed 's,@LIBS\@,-lmd_mpi_d -lgmx_mpi_d -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath ,' | \
sed 's,@CFLAGS\@,-g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack   -I/usr/include -I/usr/include/gromacs -DGMX_DOUBLE,' | \
sed 's,@CC\@,mpicc,' | \
sed 's,@host\@,i586-alt-linux-gnu,' >Makefile.i586-alt-linux-gnu_double
sed: -e expression #1, char 36: unknown option to `s'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/template'
Making all in html
Making all in .
make[3]: Nothing to be done for 'all-am'.
Making all in images
make[3]: Nothing to be done for 'all'.
Making all in online
make[3]: Nothing to be done for 'all'.
make[2]: Nothing to be done for 'all-am'.
Making all in man
Making all in man1
make[2]: Nothing to be done for 'all'.
make[2]: Nothing to be done for 'all-am'.
make[1]: Nothing to be done for 'all-am'.
+ popd
~/RPM/BUILD/gromacs-4.0.7
+ exit 0
Executing(%install): /bin/sh -e /usr/src/tmp/rpm-tmp.78467
+ umask 022
+ /bin/mkdir -p /usr/src/RPM/BUILD
+ cd /usr/src/RPM/BUILD
+ /bin/chmod -Rf u+rwX -- /usr/src/tmp/gromacs-buildroot
+ :
+ /bin/rm -rf -- /usr/src/tmp/gromacs-buildroot
+ cd gromacs-4.0.7
+ export 'OMPI_LDFLAGS=-Wl,--as-needed,-rpath,/usr/lib/openmpi/lib -L/usr/lib/openmpi/lib'
+ OMPI_LDFLAGS='-Wl,--as-needed,-rpath,/usr/lib/openmpi/lib -L/usr/lib/openmpi/lib'
+ pushd single
~/RPM/BUILD/gromacs-4.0.7/single ~/RPM/BUILD/gromacs-4.0.7
+ make 'INSTALL=/bin/install -p' install DESTDIR=/usr/src/tmp/gromacs-buildroot
make: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single'
Making install in include
make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/include'
Making install in .
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/include'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/include'
make[3]: Nothing to be done for 'install-exec-am'.
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/include/gromacs'
 /bin/install -p -m 644 ../../include/3dview.h ../../include/assert.h ../../include/atomprop.h ../../include/bondf.h ../../include/calcgrid.h ../../include/calch.h ../../include/calcmu.h ../../include/checkpoint.h ../../include/confio.h ../../include/constr.h ../../include/copyrite.h ../../include/coulomb.h ../../include/dihre.h ../../include/disre.h ../../include/domdec.h ../../include/domdec_network.h ../../include/do_fit.h ../../include/ebin.h ../../include/edsam.h ../../include/enxio.h ../../include/gmx_fatal.h ../../include/ffscanf.h ../../include/fftgrid.h ../../include/filenm.h ../../include/force.h ../../include/futil.h ../../include/gbutil.h ../../include/gmx_ana.h ../../include/gmx_arpack.h ../../include/gmx_blas.h ../../include/gmxcomplex.h ../../include/gmx_cyclecounter.h ../../include/gmxfio.h ../../include/gmx_fft.h ../../include/gmx_lapack.h ../../include/gmx_random.h ../../include/gmx_parallel_3dfft.h ../../include/gmx_system_xdr.h ../../include/gmx_thread.h ../../include/gmx_wallcycle.h '/usr/src/tmp/gromacs-buildroot/usr/include/gromacs'
 /bin/install -p -m 644 ../../include/gpp_atomtype.h ../../include/gpp_nextnb.h ../../include/grompp.h ../../include/gstat.h ../../include/index.h ../../include/invblock.h ../../include/macros.h ../../include/magic.h ../../include/main.h ../../include/maths.h ../../include/matio.h ../../include/mdatoms.h ../../include/mdebin.h ../../include/mdrun.h ../../include/mpelogging.h ../../include/mshift.h ../../include/mtop_util.h ../../include/mtxio.h ../../include/mvdata.h ../../include/names.h ../../include/network.h ../../include/nonbonded.h ../../include/nrama.h ../../include/nrjac.h ../../include/nrnb.h ../../include/nsgrid.h ../../include/ns.h ../../include/orires.h ../../include/partdec.h ../../include/pbc.h ../../include/pdbio.h ../../include/pdebug.h ../../include/perf_est.h ../../include/physics.h ../../include/pme.h ../../include/pppm.h ../../include/princ.h ../../include/pull.h ../../include/qmmm.h ../../include/random.h '/usr/src/tmp/gromacs-buildroot/usr/include/gromacs'
 /bin/install -p -m 644 ../../include/rbin.h ../../include/rdgroup.h ../../include/readcomp.h ../../include/readinp.h ../../include/reorder.h ../../include/rmpbc.h ../../include/shellfc.h ../../include/shift.h ../../include/smalloc.h ../../include/sortwater.h ../../include/sparsematrix.h ../../include/split.h ../../include/splitter.h ../../include/statusio.h ../../include/statutil.h ../../include/strdb.h ../../include/string2.h ../../include/struc2.h ../../include/symtab.h ../../include/sysstuff.h ../../include/tags.h ../../include/tgroup.h ../../include/topsort.h ../../include/tpxio.h ../../include/transfer.h ../../include/trnio.h ../../include/txtdump.h ../../include/typedefs.h ../../include/update.h ../../include/utils.h ../../include/vcm.h ../../include/vec.h ../../include/viewit.h ../../include/vsite.h ../../include/wgms.h ../../include/wman.h ../../include/writeps.h ../../include/xdrf.h ../../include/xtcio.h ../../include/xvgr.h '/usr/src/tmp/gromacs-buildroot/usr/include/gromacs'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/include'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/include'
Making install in types
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/include/types'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/include/types'
make[3]: Nothing to be done for 'install-exec-am'.
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/include/gromacs/types'
 /bin/install -p -m 644 ../../../include/types/atoms.h ../../../include/types/forcerec.h ../../../include/types/ifunc.h ../../../include/types/mdatom.h ../../../include/types/simple.h ../../../include/types/block.h ../../../include/types/constr.h ../../../include/types/energy.h ../../../include/types/graph.h ../../../include/types/inputrec.h ../../../include/types/nblist.h ../../../include/types/ns.h ../../../include/types/nsgrid.h ../../../include/types/symtab.h ../../../include/types/commrec.h ../../../include/types/enums.h ../../../include/types/group.h ../../../include/types/ishift.h ../../../include/types/nbslist.h ../../../include/types/topology.h ../../../include/types/fcdata.h ../../../include/types/filenm.h ../../../include/types/idef.h ../../../include/types/matrix.h ../../../include/types/nrnb.h ../../../include/types/trx.h ../../../include/types/state.h ../../../include/types/pbc.h ../../../include/types/qmmmrec.h ../../../include/types/shellfc.h '/usr/src/tmp/gromacs-buildroot/usr/include/gromacs/types'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/include/types'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/include/types'
make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/include'
Making install in src
make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src'
Making install in gmxlib
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
Making install in nonbonded
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded'
Making install in nb_kernel_ia32_sse
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
make[5]: Nothing to be done for 'install-exec-am'.
make[5]: Nothing to be done for 'install-data-am'.
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
Making install in nb_kernel_ia32_3dnow
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow'
make[5]: Nothing to be done for 'install-exec-am'.
make[5]: Nothing to be done for 'install-data-am'.
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow'
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow'
Making install in nb_kernel
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make  install-am
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Nothing to be done for 'install-exec-am'.
make[6]: Nothing to be done for 'install-data-am'.
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded'
make[5]: Nothing to be done for 'install-exec-am'.
make[5]: Nothing to be done for 'install-data-am'.
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded'
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded'
Making install in gmx_blas
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas'
make[4]: Nothing to be done for 'install-exec-am'.
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas'
Making install in gmx_lapack
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack'
make[4]: Nothing to be done for 'install-exec-am'.
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/lib'
 /bin/sh ../../libtool   --mode=install /bin/install -p   libgmx.la '/usr/src/tmp/gromacs-buildroot/usr/lib'
/bin/install -p .libs/libgmx.so.5.0.0 /usr/src/tmp/gromacs-buildroot/usr/lib/libgmx.so.5.0.0
(cd /usr/src/tmp/gromacs-buildroot/usr/lib && { ln -s -f libgmx.so.5.0.0 libgmx.so.5 || { rm -f libgmx.so.5 && ln -s libgmx.so.5.0.0 libgmx.so.5; }; })
(cd /usr/src/tmp/gromacs-buildroot/usr/lib && { ln -s -f libgmx.so.5.0.0 libgmx.so || { rm -f libgmx.so && ln -s libgmx.so.5.0.0 libgmx.so; }; })
/bin/install -p .libs/libgmx.lai /usr/src/tmp/gromacs-buildroot/usr/lib/libgmx.la
libtool: install: warning: remember to run `libtool --finish /usr/lib'
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
Making install in mdlib
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/lib'
 /bin/sh ../../libtool   --mode=install /bin/install -p   libmd.la '/usr/src/tmp/gromacs-buildroot/usr/lib'
libtool: install: warning: relinking `libmd.la'
(cd /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib; /bin/sh ../../libtool  --tag=CC --mode=relink i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -version-info 5:0:0 -lgslcblas -o libmd.la -rpath /usr/lib calcmu.lo calcvir.lo constr.lo coupling.lo domdec.lo domdec_con.lo domdec_network.lo domdec_setup.lo domdec_top.lo ebin.lo edsam.lo ewald.lo fftgrid.lo force.lo ghat.lo init.lo mdatom.lo mdebin.lo minimize.lo mvxvf.lo ns.lo nsgrid.lo perf_est.lo pme.lo pme_pp.lo pppm.lo partdec.lo pull.lo pullutil.lo rf_util.lo shakef.lo sim_util.lo shellfc.lo stat.lo tables.lo tgroup.lo update.lo vcm.lo vsite.lo wall.lo wnblist.lo csettle.lo clincs.lo qmmm.lo gmx_fft.lo gmx_parallel_3dfft.lo gmx_wallcycle.lo qm_gaussian.lo gmx_fft_fftw3.lo ../gmxlib/libgmx.la -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -inst-prefix-dir /usr/src/tmp/gromacs-buildroot)  
i586-alt-linux-gcc -shared  .libs/calcmu.o .libs/calcvir.o .libs/constr.o .libs/coupling.o .libs/domdec.o .libs/domdec_con.o .libs/domdec_network.o .libs/domdec_setup.o .libs/domdec_top.o .libs/ebin.o .libs/edsam.o .libs/ewald.o .libs/fftgrid.o .libs/force.o .libs/ghat.o .libs/init.o .libs/mdatom.o .libs/mdebin.o .libs/minimize.o .libs/mvxvf.o .libs/ns.o .libs/nsgrid.o .libs/perf_est.o .libs/pme.o .libs/pme_pp.o .libs/pppm.o .libs/partdec.o .libs/pull.o .libs/pullutil.o .libs/rf_util.o .libs/shakef.o .libs/sim_util.o .libs/shellfc.o .libs/stat.o .libs/tables.o .libs/tgroup.o .libs/update.o .libs/vcm.o .libs/vsite.o .libs/wall.o .libs/wnblist.o .libs/csettle.o .libs/clincs.o .libs/qmmm.o .libs/gmx_fft.o .libs/gmx_parallel_3dfft.o .libs/gmx_wallcycle.o .libs/qm_gaussian.o .libs/gmx_fft_fftw3.o  -lgslcblas -L/usr/src/tmp/gromacs-buildroot/usr/lib -L/usr/lib -lgmx -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath  -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wl,-soname -Wl,libmd.so.5 -o .libs/libmd.so.5.0.0
/bin/install -p .libs/libmd.so.5.0.0T /usr/src/tmp/gromacs-buildroot/usr/lib/libmd.so.5.0.0
(cd /usr/src/tmp/gromacs-buildroot/usr/lib && { ln -s -f libmd.so.5.0.0 libmd.so.5 || { rm -f libmd.so.5 && ln -s libmd.so.5.0.0 libmd.so.5; }; })
(cd /usr/src/tmp/gromacs-buildroot/usr/lib && { ln -s -f libmd.so.5.0.0 libmd.so || { rm -f libmd.so && ln -s libmd.so.5.0.0 libmd.so; }; })
/bin/install -p .libs/libmd.lai /usr/src/tmp/gromacs-buildroot/usr/lib/libmd.la
libtool: install: warning: remember to run `libtool --finish /usr/lib'
make  install-exec-hook
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[4]: Nothing to be done for 'install-exec-hook'.
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
Making install in kernel
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/bin'
  /bin/sh ../../libtool   --mode=install /bin/install -p grompp mdrun tpbconv pdb2gmx protonate luck gmxdump gmxcheck x2top '/usr/src/tmp/gromacs-buildroot/usr/bin'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib'
/bin/install -p .libs/grompp /usr/src/tmp/gromacs-buildroot/usr/bin/grompp
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib'
/bin/install -p .libs/mdrun /usr/src/tmp/gromacs-buildroot/usr/bin/mdrun
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib'
/bin/install -p .libs/tpbconv /usr/src/tmp/gromacs-buildroot/usr/bin/tpbconv
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib'
/bin/install -p .libs/pdb2gmx /usr/src/tmp/gromacs-buildroot/usr/bin/pdb2gmx
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib'
/bin/install -p .libs/protonate /usr/src/tmp/gromacs-buildroot/usr/bin/protonate
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib'
/bin/install -p .libs/luck /usr/src/tmp/gromacs-buildroot/usr/bin/luck
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib'
/bin/install -p .libs/gmxdump /usr/src/tmp/gromacs-buildroot/usr/bin/gmxdump
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib'
/bin/install -p .libs/gmxcheck /usr/src/tmp/gromacs-buildroot/usr/bin/gmxcheck
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib'
/bin/install -p .libs/x2top /usr/src/tmp/gromacs-buildroot/usr/bin/x2top
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
Making install in tools
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/lib'
 /bin/sh ../../libtool   --mode=install /bin/install -p   libgmxana.la '/usr/src/tmp/gromacs-buildroot/usr/lib'
libtool: install: warning: relinking `libgmxana.la'
(cd /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools; /bin/sh ../../libtool  --tag=CC --mode=relink i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -version-info 5:0:0 -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o libgmxana.la -rpath /usr/lib autocorr.lo expfit.lo polynomials.lo levenmar.lo anadih.lo pp2shift.lo dlist.lo eigio.lo lsq.lo cmat.lo eigensolver.lo nsc.lo hxprops.lo fitahx.lo gmx_analyze.lo gmx_anaeig.lo gmx_angle.lo gmx_bond.lo gmx_bundle.lo gmx_chi.lo gmx_cluster.lo gmx_confrms.lo gmx_covar.lo gmx_current.lo gmx_density.lo gmx_densmap.lo gmx_dih.lo gmx_dielectric.lo gmx_kinetics.lo gmx_spatial.lo gmx_dipoles.lo gmx_disre.lo gmx_dist.lo gmx_dyndom.lo gmx_enemat.lo gmx_energy.lo gmx_lie.lo gmx_filter.lo gmx_gyrate.lo gmx_h2order.lo gmx_hbond.lo gmx_helix.lo gmx_mindist.lo gmx_msd.lo gmx_morph.lo gmx_nmeig.lo gmx_nmens.lo gmx_order.lo gmx_principal.lo gmx_polystat.lo gmx_potential.lo gmx_rama.lo gmx_rdf.lo gmx_rms.lo gmx_rmsdist.lo gmx_rmsf.lo gmx_rotacf.lo gmx_saltbr.lo gmx_sas.lo gmx_sdf.lo gmx_sgangle.lo gmx_sorient.lo gmx_spol.lo gmx_tcaf.lo gmx_traj.lo gmx_velacc.lo gmx_helixorient.lo gmx_clustsize.lo gmx_mdmat.lo gmx_wham.lo correl.lo gmx_sham.lo gmx_nmtraj.lo gmx_trjconv.lo gmx_trjcat.lo gmx_trjorder.lo gmx_xpm2ps.lo gmx_editconf.lo gmx_genbox.lo gmx_genion.lo gmx_genconf.lo gmx_genpr.lo gmx_eneconv.lo gmx_vanhove.lo gmx_wheel.lo addconf.lo calcpot.lo edittop.lo ../gmxlib/libgmx.la ../mdlib/libmd.la -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte -inst-prefix-dir /usr/src/tmp/gromacs-buildroot)  
i586-alt-linux-gcc -shared  .libs/autocorr.o .libs/expfit.o .libs/polynomials.o .libs/levenmar.o .libs/anadih.o .libs/pp2shift.o .libs/dlist.o .libs/eigio.o .libs/lsq.o .libs/cmat.o .libs/eigensolver.o .libs/nsc.o .libs/hxprops.o .libs/fitahx.o .libs/gmx_analyze.o .libs/gmx_anaeig.o .libs/gmx_angle.o .libs/gmx_bond.o .libs/gmx_bundle.o .libs/gmx_chi.o .libs/gmx_cluster.o .libs/gmx_confrms.o .libs/gmx_covar.o .libs/gmx_current.o .libs/gmx_density.o .libs/gmx_densmap.o .libs/gmx_dih.o .libs/gmx_dielectric.o .libs/gmx_kinetics.o .libs/gmx_spatial.o .libs/gmx_dipoles.o .libs/gmx_disre.o .libs/gmx_dist.o .libs/gmx_dyndom.o .libs/gmx_enemat.o .libs/gmx_energy.o .libs/gmx_lie.o .libs/gmx_filter.o .libs/gmx_gyrate.o .libs/gmx_h2order.o .libs/gmx_hbond.o .libs/gmx_helix.o .libs/gmx_mindist.o .libs/gmx_msd.o .libs/gmx_morph.o .libs/gmx_nmeig.o .libs/gmx_nmens.o .libs/gmx_order.o .libs/gmx_principal.o .libs/gmx_polystat.o .libs/gmx_potential.o .libs/gmx_rama.o .libs/gmx_rdf.o .libs/gmx_rms.o .libs/gmx_rmsdist.o .libs/gmx_rmsf.o .libs/gmx_rotacf.o .libs/gmx_saltbr.o .libs/gmx_sas.o .libs/gmx_sdf.o .libs/gmx_sgangle.o .libs/gmx_sorient.o .libs/gmx_spol.o .libs/gmx_tcaf.o .libs/gmx_traj.o .libs/gmx_velacc.o .libs/gmx_helixorient.o .libs/gmx_clustsize.o .libs/gmx_mdmat.o .libs/gmx_wham.o .libs/correl.o .libs/gmx_sham.o .libs/gmx_nmtraj.o .libs/gmx_trjconv.o .libs/gmx_trjcat.o .libs/gmx_trjorder.o .libs/gmx_xpm2ps.o .libs/gmx_editconf.o .libs/gmx_genbox.o .libs/gmx_genion.o .libs/gmx_genconf.o .libs/gmx_genpr.o .libs/gmx_eneconv.o .libs/gmx_vanhove.o .libs/gmx_wheel.o .libs/addconf.o .libs/calcpot.o .libs/edittop.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/lib/openmpi/lib -L/usr/src/tmp/gromacs-buildroot/usr/lib -L/usr/lib -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -L/usr/src/tmp/gromacs-buildroot/usr/lib/openmpi/lib -lmpi -lopen-pal -lopen-rte  -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wl,-Rpath:/usr/lib/openmpi/lib -Wl,-soname -Wl,libgmxana.so.5 -o .libs/libgmxana.so.5.0.0
/bin/install -p .libs/libgmxana.so.5.0.0T /usr/src/tmp/gromacs-buildroot/usr/lib/libgmxana.so.5.0.0
(cd /usr/src/tmp/gromacs-buildroot/usr/lib && { ln -s -f libgmxana.so.5.0.0 libgmxana.so.5 || { rm -f libgmxana.so.5 && ln -s libgmxana.so.5.0.0 libgmxana.so.5; }; })
(cd /usr/src/tmp/gromacs-buildroot/usr/lib && { ln -s -f libgmxana.so.5.0.0 libgmxana.so || { rm -f libgmxana.so && ln -s libgmxana.so.5.0.0 libgmxana.so; }; })
/bin/install -p .libs/libgmxana.lai /usr/src/tmp/gromacs-buildroot/usr/lib/libgmxana.la
libtool: install: warning: remember to run `libtool --finish /usr/lib'
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/bin'
  /bin/sh ../../libtool   --mode=install /bin/install -p do_dssp editconf eneconv genbox genconf genrestr g_nmtraj make_ndx mk_angndx trjcat trjconv trjorder wheel xpm2ps genion anadock make_edi g_analyze g_anaeig g_angle g_bond g_bundle g_chi g_cluster g_confrms g_covar g_current g_density g_densmap g_dih g_dielectric g_helixorient g_principal g_dipoles g_disre g_dist g_dyndom g_enemat g_energy g_lie g_filter g_gyrate g_h2order g_hbond g_helix g_mindist g_msd g_morph g_nmeig g_nmens g_order g_polystat g_potential g_rama g_rdf g_rms g_rmsdist g_rmsf g_rotacf g_saltbr g_sas g_sgangle g_sham g_sorient g_spol g_sdf g_spatial g_tcaf g_traj g_vanhove g_velacc g_clustsize g_mdmat g_wham g_kinetics sigeps '/usr/src/tmp/gromacs-buildroot/usr/bin'
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib'
/bin/install -p .libs/do_dssp /usr/src/tmp/gromacs-buildroot/usr/bin/do_dssp
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib'
/bin/install -p .libs/editconf /usr/src/tmp/gromacs-buildroot/usr/bin/editconf
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib'
/bin/install -p .libs/eneconv /usr/src/tmp/gromacs-buildroot/usr/bin/eneconv
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib'
/bin/install -p .libs/genbox /usr/src/tmp/gromacs-buildroot/usr/bin/genbox
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib'
/bin/install -p .libs/genconf /usr/src/tmp/gromacs-buildroot/usr/bin/genconf
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib'
/bin/install -p .libs/genrestr /usr/src/tmp/gromacs-buildroot/usr/bin/genrestr
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_nmtraj /usr/src/tmp/gromacs-buildroot/usr/bin/g_nmtraj
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib'
/bin/install -p .libs/make_ndx /usr/src/tmp/gromacs-buildroot/usr/bin/make_ndx
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib'
/bin/install -p .libs/mk_angndx /usr/src/tmp/gromacs-buildroot/usr/bin/mk_angndx
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib'
/bin/install -p .libs/trjcat /usr/src/tmp/gromacs-buildroot/usr/bin/trjcat
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib'
/bin/install -p .libs/trjconv /usr/src/tmp/gromacs-buildroot/usr/bin/trjconv
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib'
/bin/install -p .libs/trjorder /usr/src/tmp/gromacs-buildroot/usr/bin/trjorder
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib'
/bin/install -p .libs/wheel /usr/src/tmp/gromacs-buildroot/usr/bin/wheel
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib'
/bin/install -p .libs/xpm2ps /usr/src/tmp/gromacs-buildroot/usr/bin/xpm2ps
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib'
/bin/install -p .libs/genion /usr/src/tmp/gromacs-buildroot/usr/bin/genion
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib'
/bin/install -p .libs/anadock /usr/src/tmp/gromacs-buildroot/usr/bin/anadock
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib'
/bin/install -p .libs/make_edi /usr/src/tmp/gromacs-buildroot/usr/bin/make_edi
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_analyze /usr/src/tmp/gromacs-buildroot/usr/bin/g_analyze
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_anaeig /usr/src/tmp/gromacs-buildroot/usr/bin/g_anaeig
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_angle /usr/src/tmp/gromacs-buildroot/usr/bin/g_angle
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_bond /usr/src/tmp/gromacs-buildroot/usr/bin/g_bond
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_bundle /usr/src/tmp/gromacs-buildroot/usr/bin/g_bundle
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_chi /usr/src/tmp/gromacs-buildroot/usr/bin/g_chi
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_cluster /usr/src/tmp/gromacs-buildroot/usr/bin/g_cluster
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_confrms /usr/src/tmp/gromacs-buildroot/usr/bin/g_confrms
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_covar /usr/src/tmp/gromacs-buildroot/usr/bin/g_covar
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_current /usr/src/tmp/gromacs-buildroot/usr/bin/g_current
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_density /usr/src/tmp/gromacs-buildroot/usr/bin/g_density
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_densmap /usr/src/tmp/gromacs-buildroot/usr/bin/g_densmap
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_dih /usr/src/tmp/gromacs-buildroot/usr/bin/g_dih
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_dielectric /usr/src/tmp/gromacs-buildroot/usr/bin/g_dielectric
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_helixorient /usr/src/tmp/gromacs-buildroot/usr/bin/g_helixorient
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_principal /usr/src/tmp/gromacs-buildroot/usr/bin/g_principal
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_dipoles /usr/src/tmp/gromacs-buildroot/usr/bin/g_dipoles
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_disre /usr/src/tmp/gromacs-buildroot/usr/bin/g_disre
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_dist /usr/src/tmp/gromacs-buildroot/usr/bin/g_dist
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_dyndom /usr/src/tmp/gromacs-buildroot/usr/bin/g_dyndom
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_enemat /usr/src/tmp/gromacs-buildroot/usr/bin/g_enemat
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_energy /usr/src/tmp/gromacs-buildroot/usr/bin/g_energy
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_lie /usr/src/tmp/gromacs-buildroot/usr/bin/g_lie
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_filter /usr/src/tmp/gromacs-buildroot/usr/bin/g_filter
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_gyrate /usr/src/tmp/gromacs-buildroot/usr/bin/g_gyrate
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_h2order /usr/src/tmp/gromacs-buildroot/usr/bin/g_h2order
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_hbond /usr/src/tmp/gromacs-buildroot/usr/bin/g_hbond
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_helix /usr/src/tmp/gromacs-buildroot/usr/bin/g_helix
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_mindist /usr/src/tmp/gromacs-buildroot/usr/bin/g_mindist
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_msd /usr/src/tmp/gromacs-buildroot/usr/bin/g_msd
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_morph /usr/src/tmp/gromacs-buildroot/usr/bin/g_morph
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_nmeig /usr/src/tmp/gromacs-buildroot/usr/bin/g_nmeig
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_nmens /usr/src/tmp/gromacs-buildroot/usr/bin/g_nmens
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_order /usr/src/tmp/gromacs-buildroot/usr/bin/g_order
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_polystat /usr/src/tmp/gromacs-buildroot/usr/bin/g_polystat
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_potential /usr/src/tmp/gromacs-buildroot/usr/bin/g_potential
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_rama /usr/src/tmp/gromacs-buildroot/usr/bin/g_rama
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_rdf /usr/src/tmp/gromacs-buildroot/usr/bin/g_rdf
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_rms /usr/src/tmp/gromacs-buildroot/usr/bin/g_rms
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_rmsdist /usr/src/tmp/gromacs-buildroot/usr/bin/g_rmsdist
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_rmsf /usr/src/tmp/gromacs-buildroot/usr/bin/g_rmsf
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_rotacf /usr/src/tmp/gromacs-buildroot/usr/bin/g_rotacf
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_saltbr /usr/src/tmp/gromacs-buildroot/usr/bin/g_saltbr
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_sas /usr/src/tmp/gromacs-buildroot/usr/bin/g_sas
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_sgangle /usr/src/tmp/gromacs-buildroot/usr/bin/g_sgangle
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_sham /usr/src/tmp/gromacs-buildroot/usr/bin/g_sham
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_sorient /usr/src/tmp/gromacs-buildroot/usr/bin/g_sorient
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_spol /usr/src/tmp/gromacs-buildroot/usr/bin/g_spol
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_sdf /usr/src/tmp/gromacs-buildroot/usr/bin/g_sdf
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_spatial /usr/src/tmp/gromacs-buildroot/usr/bin/g_spatial
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_tcaf /usr/src/tmp/gromacs-buildroot/usr/bin/g_tcaf
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_traj /usr/src/tmp/gromacs-buildroot/usr/bin/g_traj
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_vanhove /usr/src/tmp/gromacs-buildroot/usr/bin/g_vanhove
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_velacc /usr/src/tmp/gromacs-buildroot/usr/bin/g_velacc
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_clustsize /usr/src/tmp/gromacs-buildroot/usr/bin/g_clustsize
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_mdmat /usr/src/tmp/gromacs-buildroot/usr/bin/g_mdmat
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_wham /usr/src/tmp/gromacs-buildroot/usr/bin/g_wham
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_kinetics /usr/src/tmp/gromacs-buildroot/usr/bin/g_kinetics
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib'
/bin/install -p .libs/sigeps /usr/src/tmp/gromacs-buildroot/usr/bin/sigeps
make  install-exec-hook
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
libname="libgmxana"; \
nompi="`echo $libname | sed -e 's,_mpi,,'`"; \
libdir="/usr/lib"; \
if echo $libname | grep mpi >/dev/null ; then \
  (cd $libdir && test -e $libname.a -a ! -e $nompi.a && ln -s $libname.a $nompi.a ; exit 0); \
  (cd $libdir && test -e $libname.so -a ! -e $nompi.so && ln -s $libname.so $nompi.so ; exit 0); \
fi; 
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
Making install in ngmx
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx'
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/bin'
  /bin/sh ../../libtool   --mode=install /bin/install -p ngmx xrama highway '/usr/src/tmp/gromacs-buildroot/usr/bin'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib'
/bin/install -p .libs/ngmx /usr/src/tmp/gromacs-buildroot/usr/bin/ngmx
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib'
/bin/install -p .libs/xrama /usr/src/tmp/gromacs-buildroot/usr/bin/xrama
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib'
/bin/install -p .libs/highway /usr/src/tmp/gromacs-buildroot/usr/bin/highway
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx'
Making install in contrib
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/contrib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/contrib'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/contrib'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/contrib'
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src'
make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src'
Making install in admin
make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/admin'
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/admin'
make[2]: Nothing to be done for 'install-exec-am'.
make[2]: Nothing to be done for 'install-data-am'.
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/admin'
make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/admin'
Making install in scripts
make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/scripts'
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/scripts'
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/bin'
 /bin/install -p GMXRC GMXRC.csh GMXRC.bash GMXRC.zsh '/usr/src/tmp/gromacs-buildroot/usr/bin'
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/bin'
 /bin/install -p ../../scripts/completion.csh ../../scripts/completion.bash ../../scripts/completion.zsh ../../scripts/demux.pl ../../scripts/xplor2gmx.pl '/usr/src/tmp/gromacs-buildroot/usr/bin'
make[2]: Nothing to be done for 'install-data-am'.
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/scripts'
make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/scripts'
Making install in share
make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share'
Making install in top
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/top'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/top'
make[3]: Nothing to be done for 'install-exec-am'.
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/top'
 /bin/install -p -m 644 ../../../share/top/ffgmx.itp ../../../share/top/ffgmxnb.itp ../../../share/top/ffgmxbon.itp ../../../share/top/ffgmx.atp ../../../share/top/ffgmx.hdb ../../../share/top/ffgmx.rtp ../../../share/top/ffgmx-c.tdb ../../../share/top/ffgmx-n.tdb ../../../share/top/ffgmx2.itp ../../../share/top/ffgmx2nb.itp ../../../share/top/ffgmx2bon.itp ../../../share/top/ffgmx2.atp ../../../share/top/ffgmx2.hdb ../../../share/top/ffgmx2.rtp ../../../share/top/ffgmx2-c.tdb ../../../share/top/ffgmx2-n.tdb ../../../share/top/ffG43a1.itp ../../../share/top/ffG43a1nb.itp ../../../share/top/ffG43a1bon.itp ../../../share/top/ffG43a1.atp ../../../share/top/ffG43a1.hdb ../../../share/top/ffG43a1.rtp ../../../share/top/ffG43a1-c.tdb ../../../share/top/ffG43a1-n.tdb ../../../share/top/ffG43a2.itp ../../../share/top/ffG43a2nb.itp ../../../share/top/ffG43a2bon.itp ../../../share/top/ffG43a2.atp ../../../share/top/ffG43a2.hdb ../../../share/top/ffG43a2.rtp ../../../share/top/ffG43a2-c.tdb ../../../share/top/ffG43a2-n.tdb ../../../share/top/ffgmx.ddb ../../../share/top/ffgmx2.ddb ../../../share/top/ffG43a1.ddb ../../../share/top/ffG43a2.ddb ../../../share/top/ffG45a3-c.tdb ../../../share/top/ffG45a3.atp ../../../share/top/ffG45a3.hdb ../../../share/top/ffG45a3.rtp '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/top'
 /bin/install -p -m 644 ../../../share/top/ffG45a3nb.itp ../../../share/top/ffG45a3-n.tdb ../../../share/top/ffG45a3.ddb ../../../share/top/ffG45a3.itp ../../../share/top/ffG45a3bon.itp ../../../share/top/ffG53a5-c.tdb ../../../share/top/ffG53a5.atp ../../../share/top/ffG53a5.hdb ../../../share/top/ffG53a5.rtp ../../../share/top/ffG53a5nb.itp ../../../share/top/ffG53a5-n.tdb ../../../share/top/ffG53a5.ddb ../../../share/top/ffG53a5.itp ../../../share/top/ffG53a5bon.itp ../../../share/top/ffG53a5.n2t ../../../share/top/ffG53a6-c.tdb ../../../share/top/ffG53a6.atp ../../../share/top/ffG53a6.hdb ../../../share/top/ffG53a6.rtp ../../../share/top/ffG53a6nb.itp ../../../share/top/ffG53a6-n.tdb ../../../share/top/ffG53a6.ddb ../../../share/top/ffG53a6.itp ../../../share/top/ffG53a6bon.itp ../../../share/top/ffoplsaa.atp ../../../share/top/ffoplsaa.itp ../../../share/top/ffoplsaabon.itp ../../../share/top/ffoplsaanb.itp ../../../share/top/ffoplsaa.hdb ../../../share/top/ffoplsaa-n.tdb ../../../share/top/ffoplsaa-c.tdb ../../../share/top/ffoplsaa.rtp ../../../share/top/ffoplsaa.ddb ../../../share/top/ffoplsaa.n2t ../../../share/top/ffencads-c.tdb ../../../share/top/ffencads.itp ../../../share/top/ffencadv-c.tdb ../../../share/top/ffencadv.itp ../../../share/top/ffencads-n.tdb ../../../share/top/ffencads.rtp '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/top'
 /bin/install -p -m 644 ../../../share/top/ffencadv-n.tdb ../../../share/top/ffencadv.rtp ../../../share/top/ffencads.atp ../../../share/top/ffencadsbon.itp ../../../share/top/ffencadv.atp ../../../share/top/ffencadvbon.itp ../../../share/top/ffencads.hdb ../../../share/top/ffencadsnb.itp ../../../share/top/ffencadv.hdb ../../../share/top/ffencadvnb.itp ../../../share/top/1mlg.itp ../../../share/top/2mlg.itp ../../../share/top/benzamide.itp ../../../share/top/bondadd.itp ../../../share/top/buck.itp ../../../share/top/decane.itp ../../../share/top/dlg.itp ../../../share/top/dmso.itp ../../../share/top/fa.itp ../../../share/top/ff_dum.itp ../../../share/top/flexspc.itp ../../../share/top/flexspce.itp ../../../share/top/flexwat-ferguson.itp ../../../share/top/h2p4o13.itp ../../../share/top/h2p8o25.itp ../../../share/top/h2po4.itp ../../../share/top/ions.itp ../../../share/top/methanol.itp ../../../share/top/spc.itp ../../../share/top/spce.itp ../../../share/top/tfe.itp ../../../share/top/tip3p.itp ../../../share/top/tip4p.itp ../../../share/top/urea.itp ../../../share/top/dgsolv.dat ../../../share/top/electroneg.dat ../../../share/top/dec50.gro ../../../share/top/dmso.gro ../../../share/top/spc216.gro ../../../share/top/tip4p.gro '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/top'
 /bin/install -p -m 644 ../../../share/top/urea+h2o.gro ../../../share/top/f3c.itp ../../../share/top/aminoacids.dat ../../../share/top/atommass.dat ../../../share/top/bromacs.dat ../../../share/top/ca-shift.dat ../../../share/top/cb-shift.dat ../../../share/top/co-shift.dat ../../../share/top/edissoc.dat ../../../share/top/FF.dat ../../../share/top/gurgle.dat ../../../share/top/ha-shift.dat ../../../share/top/links.dat ../../../share/top/phbres.dat ../../../share/top/random.dat ../../../share/top/refi_aa.dat ../../../share/top/specbond.dat ../../../share/top/surface.dat ../../../share/top/vdwradii.dat ../../../share/top/xlateat.dat ../../../share/top/highway.dat ../../../share/top/export.dlg ../../../share/top/bonds.dlg ../../../share/top/ss.map ../../../share/top/ps.m2p ../../../share/top/table6-10.xvg ../../../share/top/table6-11.xvg ../../../share/top/table6-12.xvg ../../../share/top/table6-8.xvg ../../../share/top/table6-9.xvg ../../../share/top/atom_nom.tbl ../../../share/top/gromacs.dtd ../../../share/top/tip5p.gro ../../../share/top/tip5p.itp ../../../share/top/sw.itp ../../../share/top/elements.dat '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/top'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/top'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/top'
Making install in tutor
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor'
Making install in nmr1
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor/nmr1'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor/nmr1'
make[4]: Nothing to be done for 'install-exec-am'.
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/nmr1'
 /bin/install -p -m 644 ../../../../share/tutor/nmr1/conf.gro ../../../../share/tutor/nmr1/grompp.mdp ../../../../share/tutor/nmr1/pep.pdb ../../../../share/tutor/nmr1/topol.top '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/nmr1'
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor/nmr1'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor/nmr1'
Making install in nmr2
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor/nmr2'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor/nmr2'
make[4]: Nothing to be done for 'install-exec-am'.
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/nmr2'
 /bin/install -p -m 644 ../../../../share/tutor/nmr2/conf.gro ../../../../share/tutor/nmr2/genconf.gcp ../../../../share/tutor/nmr2/grompp.mdp ../../../../share/tutor/nmr2/pep.pdb ../../../../share/tutor/nmr2/topol.top '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/nmr2'
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor/nmr2'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor/nmr2'
Making install in speptide
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor/speptide'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor/speptide'
make[4]: Nothing to be done for 'install-exec-am'.
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/speptide'
 /bin/install -p -m 644 ../../../../share/tutor/speptide/em.mdp ../../../../share/tutor/speptide/full.mdp ../../../../share/tutor/speptide/pr.mdp ../../../../share/tutor/speptide/speptide.pdb '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/speptide'
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor/speptide'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor/speptide'
Making install in water
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor/water'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor/water'
make[4]: Nothing to be done for 'install-exec-am'.
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/water'
 /bin/install -p -m 644 ../../../../share/tutor/water/index.ndx ../../../../share/tutor/water/conf.gro ../../../../share/tutor/water/spc216.pdb ../../../../share/tutor/water/grompp.mdp ../../../../share/tutor/water/topol.top '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/water'
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor/water'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor/water'
Making install in gmxdemo
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor/gmxdemo'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor/gmxdemo'
make[4]: Nothing to be done for 'install-exec-am'.
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/gmxdemo'
 /bin/install -p -m 644 ../../../../share/tutor/gmxdemo/cpeptide.pdb '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/gmxdemo'
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/gmxdemo'
 /bin/install -p ../../../../share/tutor/gmxdemo/demo '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/gmxdemo'
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor/gmxdemo'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor/gmxdemo'
Making install in methanol
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor/methanol'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor/methanol'
make[4]: Nothing to be done for 'install-exec-am'.
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/methanol'
 /bin/install -p -m 644 ../../../../share/tutor/methanol/index.ndx ../../../../share/tutor/methanol/conf.gro ../../../../share/tutor/methanol/methanol.pdb ../../../../share/tutor/methanol/grompp.mdp ../../../../share/tutor/methanol/topol.top ../../../../share/tutor/methanol/methanol.itp '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/methanol'
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor/methanol'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor/methanol'
Making install in mixed
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor/mixed'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor/mixed'
make[4]: Nothing to be done for 'install-exec-am'.
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/mixed'
 /bin/install -p -m 644 ../../../../share/tutor/mixed/index.ndx ../../../../share/tutor/mixed/conf.gro ../../../../share/tutor/mixed/mixed.pdb ../../../../share/tutor/mixed/grompp.mdp ../../../../share/tutor/mixed/topol.top '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/mixed'
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor/mixed'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor/mixed'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor'
make[4]: Nothing to be done for 'install-exec-am'.
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor'
Making install in template
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/template'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/template'
make[3]: Nothing to be done for 'install-exec-am'.
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/template'
 /bin/install -p -m 644 ../../../share/template/template.c ../../../share/template/README Makefile.i586-alt-linux-gnu '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/template'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/template'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/template'
Making install in html
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/html'
Making install in .
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/html'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/html'
make[4]: Nothing to be done for 'install-exec-am'.
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/html'
 /bin/install -p -m 644 ../../../share/html/online.html ../../../share/html/gmxfaq.html '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/html'
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/html'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/html'
Making install in images
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/html/images'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/html/images'
make[4]: Nothing to be done for 'install-exec-am'.
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/html/images'
 /bin/install -p -m 644 ../../../../share/html/images/features.gif ../../../../share/html/images/flow_leftrightup.gif ../../../../share/html/images/flow_vrule.gif ../../../../share/html/images/flow_down.gif ../../../../share/html/images/flow_leftup.gif ../../../../share/html/images/links.gif ../../../../share/html/images/articles.gif ../../../../share/html/images/flow_downleft.gif ../../../../share/html/images/flow_right+left.gif ../../../../share/html/images/mail.gif ../../../../share/html/images/bench.gif ../../../../share/html/images/flow_hline.gif ../../../../share/html/images/flow_right.gif ../../../../share/html/images/manual.gif ../../../../share/html/images/charts_down.gif ../../../../share/html/images/flow_left.gif ../../../../share/html/images/flow_rightleftdown.gif ../../../../share/html/images/gmxlogo_small.jpg ../../../../share/html/images/charts_up.gif ../../../../share/html/images/flow_leftright.gif ../../../../share/html/images/flow_uprightleft.gif ../../../../share/html/images/software.gif ../../../../share/html/images/faq.gif ../../../../share/html/images/flow_leftrightdown.gif ../../../../share/html/images/flow_vline.gif ../../../../share/html/images/topologies.gif ../../../../share/html/images/plotje.gif ../../../../share/html/images/xvgr.gif ../../../../share/html/images/1ctf-0.jpg ../../../../share/html/images/1ctf-0.2.jpg ../../../../share/html/images/1ctf-0.5.jpg ../../../../share/html/images/1ctf-1.jpg ../../../../share/html/images/1ctf-4.jpg ../../../../share/html/images/1ctf-10.jpg '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/html/images'
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/html/images'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/html/images'
Making install in online
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/html/online'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/html/online'
make[4]: Nothing to be done for 'install-exec-am'.
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/html/online'
 /bin/install -p -m 644 ../../../../share/html/online/cpt.html ../../../../share/html/online/dat.html ../../../../share/html/online/g_disre.html ../../../../share/html/online/g_sorient.html ../../../../share/html/online/ndx.html ../../../../share/html/online/dlg.html ../../../../share/html/online/g_dist.html ../../../../share/html/online/g_tcaf.html ../../../../share/html/online/ngmx.html ../../../../share/html/online/do_dssp.html ../../../../share/html/online/g_dyndom.html ../../../../share/html/online/g_traj.html ../../../../share/html/online/edi.html ../../../../share/html/online/g_enemat.html ../../../../share/html/online/g_velacc.html ../../../../share/html/online/options.html ../../../../share/html/online/editconf.html ../../../../share/html/online/g_energy.html ../../../../share/html/online/genbox.html ../../../../share/html/online/out.html ../../../../share/html/online/edo.html ../../../../share/html/online/g_gyrate.html ../../../../share/html/online/genconf.html ../../../../share/html/online/pdb.html ../../../../share/html/online/edr.html ../../../../share/html/online/g_h2order.html ../../../../share/html/online/genion.html ../../../../share/html/online/pdb2gmx.html ../../../../share/html/online/ene.html ../../../../share/html/online/g_hbond.html ../../../../share/html/online/genpr.html ../../../../share/html/online/protonate.html ../../../../share/html/online/eneconv.html ../../../../share/html/online/g_helix.html ../../../../share/html/online/getting_started.html ../../../../share/html/online/rtp.html ../../../../share/html/online/eps.html ../../../../share/html/online/g_lie.html ../../../../share/html/online/gmxcheck.html ../../../../share/html/online/tex.html '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/html/online'
 /bin/install -p -m 644 ../../../../share/html/online/files.html ../../../../share/html/online/g_mdmat.html ../../../../share/html/online/gmxdump.html ../../../../share/html/online/top.html ../../../../share/html/online/flow.html ../../../../share/html/online/g_mindist.html ../../../../share/html/online/gro.html ../../../../share/html/online/tpa.html ../../../../share/html/online/g87.html ../../../../share/html/online/g_morph.html ../../../../share/html/online/grompp.html ../../../../share/html/online/tpb.html ../../../../share/html/online/g96.html ../../../../share/html/online/g_msd.html ../../../../share/html/online/hat.html ../../../../share/html/online/tpbconv.html ../../../../share/html/online/g_anaeig.html ../../../../share/html/online/g_nmeig.html ../../../../share/html/online/highway.html ../../../../share/html/online/tpr.html ../../../../share/html/online/g_analyze.html ../../../../share/html/online/g_nmens.html ../../../../share/html/online/include_bot.html ../../../../share/html/online/trj.html ../../../../share/html/online/g_angle.html ../../../../share/html/online/g_order.html ../../../../share/html/online/include_top.html ../../../../share/html/online/trjcat.html ../../../../share/html/online/g_bond.html ../../../../share/html/online/g_potential.html ../../../../share/html/online/itp.html ../../../../share/html/online/trjconv.html ../../../../share/html/online/g_bundle.html ../../../../share/html/online/g_rama.html ../../../../share/html/online/log.html ../../../../share/html/online/trjorder.html ../../../../share/html/online/g_chi.html ../../../../share/html/online/g_rdf.html ../../../../share/html/online/m2p.html ../../../../share/html/online/trr.html '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/html/online'
 /bin/install -p -m 644 ../../../../share/html/online/g_cluster.html ../../../../share/html/online/g_rms.html ../../../../share/html/online/make_ndx.html ../../../../share/html/online/wheel.html ../../../../share/html/online/g_confrms.html ../../../../share/html/online/g_rmsdist.html ../../../../share/html/online/map.html ../../../../share/html/online/x2top.html ../../../../share/html/online/g_covar.html ../../../../share/html/online/g_rmsf.html ../../../../share/html/online/mdp.html ../../../../share/html/online/xpm.html ../../../../share/html/online/g_density.html ../../../../share/html/online/g_rotacf.html ../../../../share/html/online/mdp_opt.html ../../../../share/html/online/xpm2ps.html ../../../../share/html/online/g_dielectric.html ../../../../share/html/online/g_saltbr.html ../../../../share/html/online/mdrun.html ../../../../share/html/online/xrama.html ../../../../share/html/online/g_dih.html ../../../../share/html/online/g_sas.html ../../../../share/html/online/mk_angndx.html ../../../../share/html/online/xtc.html ../../../../share/html/online/g_dipoles.html ../../../../share/html/online/g_sgangle.html ../../../../share/html/online/mtx.html ../../../../share/html/online/xvg.html ../../../../share/html/online/g_densmap.html ../../../../share/html/online/g_sham.html ../../../../share/html/online/make_edi.html ../../../../share/html/online/style.css ../../../../share/html/online/water.html ../../../../share/html/online/gmxdemo.html ../../../../share/html/online/speptide.html ../../../../share/html/online/yourown.html ../../../../share/html/online/methanol.html ../../../../share/html/online/mixed.html ../../../../share/html/online/protunf.html '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/html/online'
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/html/online'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/html/online'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/html'
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share'
make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share'
Making install in man
make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/man'
Making install in man1
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/man/man1'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/man/man1'
make[3]: Nothing to be done for 'install-exec-am'.
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1'
 /bin/install -p -m 644 ../../../man/man1/anadock.1 ../../../man/man1/do_dssp.1 ../../../man/man1/editconf.1 ../../../man/man1/eneconv.1 ../../../man/man1/g_anaeig.1 ../../../man/man1/g_analyze.1 ../../../man/man1/g_angle.1 ../../../man/man1/g_bond.1 ../../../man/man1/g_bundle.1 ../../../man/man1/g_chi.1 ../../../man/man1/g_cluster.1 ../../../man/man1/g_clustsize.1 ../../../man/man1/g_confrms.1 ../../../man/man1/g_covar.1 ../../../man/man1/g_current.1 ../../../man/man1/g_density.1 ../../../man/man1/g_densmap.1 ../../../man/man1/g_dielectric.1 ../../../man/man1/g_dih.1 ../../../man/man1/g_dipoles.1 ../../../man/man1/g_disre.1 ../../../man/man1/g_dist.1 ../../../man/man1/g_dyndom.1 ../../../man/man1/g_enemat.1 ../../../man/man1/g_energy.1 ../../../man/man1/g_filter.1 ../../../man/man1/g_gyrate.1 ../../../man/man1/g_h2order.1 ../../../man/man1/g_hbond.1 ../../../man/man1/g_helix.1 ../../../man/man1/g_helixorient.1 ../../../man/man1/g_kinetics.1 ../../../man/man1/g_lie.1 ../../../man/man1/g_mdmat.1 ../../../man/man1/g_mindist.1 ../../../man/man1/g_morph.1 ../../../man/man1/g_msd.1 ../../../man/man1/g_nmeig.1 ../../../man/man1/g_nmens.1 ../../../man/man1/g_nmtraj.1 '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1'
 /bin/install -p -m 644 ../../../man/man1/g_order.1 ../../../man/man1/g_polystat.1 ../../../man/man1/g_potential.1 ../../../man/man1/g_principal.1 ../../../man/man1/g_rama.1 ../../../man/man1/g_rdf.1 ../../../man/man1/g_rms.1 ../../../man/man1/g_rmsdist.1 ../../../man/man1/g_rmsf.1 ../../../man/man1/g_rotacf.1 ../../../man/man1/g_saltbr.1 ../../../man/man1/g_sas.1 ../../../man/man1/g_sdf.1 ../../../man/man1/g_sgangle.1 ../../../man/man1/g_sham.1 ../../../man/man1/g_sorient.1 ../../../man/man1/g_spatial.1 ../../../man/man1/g_spol.1 ../../../man/man1/g_tcaf.1 ../../../man/man1/g_traj.1 ../../../man/man1/g_vanhove.1 ../../../man/man1/g_velacc.1 ../../../man/man1/g_wham.1 ../../../man/man1/gen_table.1 ../../../man/man1/genbox.1 ../../../man/man1/genconf.1 ../../../man/man1/genion.1 ../../../man/man1/genrestr.1 ../../../man/man1/gmxcheck.1 ../../../man/man1/gmxdump.1 ../../../man/man1/grompp.1 ../../../man/man1/highway.1 ../../../man/man1/make_edi.1 ../../../man/man1/make_ndx.1 ../../../man/man1/mdrun.1 ../../../man/man1/mk_angndx.1 ../../../man/man1/ngmx.1 ../../../man/man1/pdb2gmx.1 ../../../man/man1/protonate.1 ../../../man/man1/sigeps.1 '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1'
 /bin/install -p -m 644 ../../../man/man1/tpbconv.1 ../../../man/man1/trjcat.1 ../../../man/man1/trjconv.1 ../../../man/man1/trjorder.1 ../../../man/man1/wheel.1 ../../../man/man1/x2top.1 ../../../man/man1/xpm2ps.1 ../../../man/man1/xrama.1 '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/man/man1'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/man/man1'
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/man'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/man'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/man'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/man'
make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/man'
make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single'
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single'
make  install-exec-hook
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single'

GROMACS is installed under /usr.
Make sure to update your PATH and MANPATH to find the
programs and unix manual pages, and possibly LD_LIBRARY_PATH
or /etc/ld.so.conf if you are using dynamic libraries.

Please run "make tests" now to verify your installation.

If you want links to the executables in /usr/local/bin,
you can issue "make links" now.
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single'
make[2]: Nothing to be done for 'install-data-am'.
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single'
make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single'
make: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single'
+ popd
~/RPM/BUILD/gromacs-4.0.7
+ pushd double
~/RPM/BUILD/gromacs-4.0.7/double ~/RPM/BUILD/gromacs-4.0.7
+ make 'INSTALL=/bin/install -p' install DESTDIR=/usr/src/tmp/gromacs-buildroot
make: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double'
Making install in include
make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/include'
Making install in .
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/include'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/include'
make[3]: Nothing to be done for 'install-exec-am'.
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/include/gromacs'
 /bin/install -p -m 644 ../../include/3dview.h ../../include/assert.h ../../include/atomprop.h ../../include/bondf.h ../../include/calcgrid.h ../../include/calch.h ../../include/calcmu.h ../../include/checkpoint.h ../../include/confio.h ../../include/constr.h ../../include/copyrite.h ../../include/coulomb.h ../../include/dihre.h ../../include/disre.h ../../include/domdec.h ../../include/domdec_network.h ../../include/do_fit.h ../../include/ebin.h ../../include/edsam.h ../../include/enxio.h ../../include/gmx_fatal.h ../../include/ffscanf.h ../../include/fftgrid.h ../../include/filenm.h ../../include/force.h ../../include/futil.h ../../include/gbutil.h ../../include/gmx_ana.h ../../include/gmx_arpack.h ../../include/gmx_blas.h ../../include/gmxcomplex.h ../../include/gmx_cyclecounter.h ../../include/gmxfio.h ../../include/gmx_fft.h ../../include/gmx_lapack.h ../../include/gmx_random.h ../../include/gmx_parallel_3dfft.h ../../include/gmx_system_xdr.h ../../include/gmx_thread.h ../../include/gmx_wallcycle.h '/usr/src/tmp/gromacs-buildroot/usr/include/gromacs'
 /bin/install -p -m 644 ../../include/gpp_atomtype.h ../../include/gpp_nextnb.h ../../include/grompp.h ../../include/gstat.h ../../include/index.h ../../include/invblock.h ../../include/macros.h ../../include/magic.h ../../include/main.h ../../include/maths.h ../../include/matio.h ../../include/mdatoms.h ../../include/mdebin.h ../../include/mdrun.h ../../include/mpelogging.h ../../include/mshift.h ../../include/mtop_util.h ../../include/mtxio.h ../../include/mvdata.h ../../include/names.h ../../include/network.h ../../include/nonbonded.h ../../include/nrama.h ../../include/nrjac.h ../../include/nrnb.h ../../include/nsgrid.h ../../include/ns.h ../../include/orires.h ../../include/partdec.h ../../include/pbc.h ../../include/pdbio.h ../../include/pdebug.h ../../include/perf_est.h ../../include/physics.h ../../include/pme.h ../../include/pppm.h ../../include/princ.h ../../include/pull.h ../../include/qmmm.h ../../include/random.h '/usr/src/tmp/gromacs-buildroot/usr/include/gromacs'
 /bin/install -p -m 644 ../../include/rbin.h ../../include/rdgroup.h ../../include/readcomp.h ../../include/readinp.h ../../include/reorder.h ../../include/rmpbc.h ../../include/shellfc.h ../../include/shift.h ../../include/smalloc.h ../../include/sortwater.h ../../include/sparsematrix.h ../../include/split.h ../../include/splitter.h ../../include/statusio.h ../../include/statutil.h ../../include/strdb.h ../../include/string2.h ../../include/struc2.h ../../include/symtab.h ../../include/sysstuff.h ../../include/tags.h ../../include/tgroup.h ../../include/topsort.h ../../include/tpxio.h ../../include/transfer.h ../../include/trnio.h ../../include/txtdump.h ../../include/typedefs.h ../../include/update.h ../../include/utils.h ../../include/vcm.h ../../include/vec.h ../../include/viewit.h ../../include/vsite.h ../../include/wgms.h ../../include/wman.h ../../include/writeps.h ../../include/xdrf.h ../../include/xtcio.h ../../include/xvgr.h '/usr/src/tmp/gromacs-buildroot/usr/include/gromacs'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/include'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/include'
Making install in types
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/include/types'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/include/types'
make[3]: Nothing to be done for 'install-exec-am'.
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/include/gromacs/types'
 /bin/install -p -m 644 ../../../include/types/atoms.h ../../../include/types/forcerec.h ../../../include/types/ifunc.h ../../../include/types/mdatom.h ../../../include/types/simple.h ../../../include/types/block.h ../../../include/types/constr.h ../../../include/types/energy.h ../../../include/types/graph.h ../../../include/types/inputrec.h ../../../include/types/nblist.h ../../../include/types/ns.h ../../../include/types/nsgrid.h ../../../include/types/symtab.h ../../../include/types/commrec.h ../../../include/types/enums.h ../../../include/types/group.h ../../../include/types/ishift.h ../../../include/types/nbslist.h ../../../include/types/topology.h ../../../include/types/fcdata.h ../../../include/types/filenm.h ../../../include/types/idef.h ../../../include/types/matrix.h ../../../include/types/nrnb.h ../../../include/types/trx.h ../../../include/types/state.h ../../../include/types/pbc.h ../../../include/types/qmmmrec.h ../../../include/types/shellfc.h '/usr/src/tmp/gromacs-buildroot/usr/include/gromacs/types'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/include/types'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/include/types'
make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/include'
Making install in src
make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src'
Making install in gmxlib
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
Making install in nonbonded
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded'
Making install in nb_kernel_ia32_sse2
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_ia32_sse2'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_ia32_sse2'
make[5]: Nothing to be done for 'install-exec-am'.
make[5]: Nothing to be done for 'install-data-am'.
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_ia32_sse2'
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_ia32_sse2'
Making install in nb_kernel
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make  install-am
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Nothing to be done for 'install-exec-am'.
make[6]: Nothing to be done for 'install-data-am'.
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded'
make[5]: Nothing to be done for 'install-exec-am'.
make[5]: Nothing to be done for 'install-data-am'.
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded'
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded'
Making install in gmx_blas
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas'
make[4]: Nothing to be done for 'install-exec-am'.
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas'
Making install in gmx_lapack
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack'
make[4]: Nothing to be done for 'install-exec-am'.
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/lib'
 /bin/sh ../../libtool   --mode=install /bin/install -p   libgmx_d.la '/usr/src/tmp/gromacs-buildroot/usr/lib'
/bin/install -p .libs/libgmx_d.so.5.0.0 /usr/src/tmp/gromacs-buildroot/usr/lib/libgmx_d.so.5.0.0
(cd /usr/src/tmp/gromacs-buildroot/usr/lib && { ln -s -f libgmx_d.so.5.0.0 libgmx_d.so.5 || { rm -f libgmx_d.so.5 && ln -s libgmx_d.so.5.0.0 libgmx_d.so.5; }; })
(cd /usr/src/tmp/gromacs-buildroot/usr/lib && { ln -s -f libgmx_d.so.5.0.0 libgmx_d.so || { rm -f libgmx_d.so && ln -s libgmx_d.so.5.0.0 libgmx_d.so; }; })
/bin/install -p .libs/libgmx_d.lai /usr/src/tmp/gromacs-buildroot/usr/lib/libgmx_d.la
libtool: install: warning: remember to run `libtool --finish /usr/lib'
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
Making install in mdlib
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/lib'
 /bin/sh ../../libtool   --mode=install /bin/install -p   libmd_d.la '/usr/src/tmp/gromacs-buildroot/usr/lib'
libtool: install: warning: relinking `libmd_d.la'
(cd /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib; /bin/sh ../../libtool  --tag=CC --mode=relink i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -version-info 5:0:0 -lgslcblas -o libmd_d.la -rpath /usr/lib calcmu.lo calcvir.lo constr.lo coupling.lo domdec.lo domdec_con.lo domdec_network.lo domdec_setup.lo domdec_top.lo ebin.lo edsam.lo ewald.lo fftgrid.lo force.lo ghat.lo init.lo mdatom.lo mdebin.lo minimize.lo mvxvf.lo ns.lo nsgrid.lo perf_est.lo pme.lo pme_pp.lo pppm.lo partdec.lo pull.lo pullutil.lo rf_util.lo shakef.lo sim_util.lo shellfc.lo stat.lo tables.lo tgroup.lo update.lo vcm.lo vsite.lo wall.lo wnblist.lo csettle.lo clincs.lo qmmm.lo gmx_fft.lo gmx_parallel_3dfft.lo gmx_wallcycle.lo qm_gaussian.lo gmx_fft_fftw3.lo ../gmxlib/libgmx_d.la -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -inst-prefix-dir /usr/src/tmp/gromacs-buildroot)  
i586-alt-linux-gcc -shared  .libs/calcmu.o .libs/calcvir.o .libs/constr.o .libs/coupling.o .libs/domdec.o .libs/domdec_con.o .libs/domdec_network.o .libs/domdec_setup.o .libs/domdec_top.o .libs/ebin.o .libs/edsam.o .libs/ewald.o .libs/fftgrid.o .libs/force.o .libs/ghat.o .libs/init.o .libs/mdatom.o .libs/mdebin.o .libs/minimize.o .libs/mvxvf.o .libs/ns.o .libs/nsgrid.o .libs/perf_est.o .libs/pme.o .libs/pme_pp.o .libs/pppm.o .libs/partdec.o .libs/pull.o .libs/pullutil.o .libs/rf_util.o .libs/shakef.o .libs/sim_util.o .libs/shellfc.o .libs/stat.o .libs/tables.o .libs/tgroup.o .libs/update.o .libs/vcm.o .libs/vsite.o .libs/wall.o .libs/wnblist.o .libs/csettle.o .libs/clincs.o .libs/qmmm.o .libs/gmx_fft.o .libs/gmx_parallel_3dfft.o .libs/gmx_wallcycle.o .libs/qm_gaussian.o .libs/gmx_fft_fftw3.o  -lgslcblas -L/usr/src/tmp/gromacs-buildroot/usr/lib -L/usr/lib -lgmx_d -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath  -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wl,-soname -Wl,libmd_d.so.5 -o .libs/libmd_d.so.5.0.0
/bin/install -p .libs/libmd_d.so.5.0.0T /usr/src/tmp/gromacs-buildroot/usr/lib/libmd_d.so.5.0.0
(cd /usr/src/tmp/gromacs-buildroot/usr/lib && { ln -s -f libmd_d.so.5.0.0 libmd_d.so.5 || { rm -f libmd_d.so.5 && ln -s libmd_d.so.5.0.0 libmd_d.so.5; }; })
(cd /usr/src/tmp/gromacs-buildroot/usr/lib && { ln -s -f libmd_d.so.5.0.0 libmd_d.so || { rm -f libmd_d.so && ln -s libmd_d.so.5.0.0 libmd_d.so; }; })
/bin/install -p .libs/libmd_d.lai /usr/src/tmp/gromacs-buildroot/usr/lib/libmd_d.la
libtool: install: warning: remember to run `libtool --finish /usr/lib'
make  install-exec-hook
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[4]: Nothing to be done for 'install-exec-hook'.
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
Making install in kernel
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/bin'
  /bin/sh ../../libtool   --mode=install /bin/install -p grompp '/usr/src/tmp/gromacs-buildroot/usr/bin/./grompp_d'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/grompp /usr/src/tmp/gromacs-buildroot/usr/bin/./grompp_d
  /bin/sh ../../libtool   --mode=install /bin/install -p mdrun '/usr/src/tmp/gromacs-buildroot/usr/bin/./mdrun_d'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/mdrun /usr/src/tmp/gromacs-buildroot/usr/bin/./mdrun_d
  /bin/sh ../../libtool   --mode=install /bin/install -p tpbconv '/usr/src/tmp/gromacs-buildroot/usr/bin/./tpbconv_d'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/tpbconv /usr/src/tmp/gromacs-buildroot/usr/bin/./tpbconv_d
  /bin/sh ../../libtool   --mode=install /bin/install -p pdb2gmx '/usr/src/tmp/gromacs-buildroot/usr/bin/./pdb2gmx_d'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/pdb2gmx /usr/src/tmp/gromacs-buildroot/usr/bin/./pdb2gmx_d
  /bin/sh ../../libtool   --mode=install /bin/install -p protonate '/usr/src/tmp/gromacs-buildroot/usr/bin/./protonate_d'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/protonate /usr/src/tmp/gromacs-buildroot/usr/bin/./protonate_d
  /bin/sh ../../libtool   --mode=install /bin/install -p luck '/usr/src/tmp/gromacs-buildroot/usr/bin/./luck_d'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/luck /usr/src/tmp/gromacs-buildroot/usr/bin/./luck_d
  /bin/sh ../../libtool   --mode=install /bin/install -p gmxdump '/usr/src/tmp/gromacs-buildroot/usr/bin/./gmxdump_d'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/gmxdump /usr/src/tmp/gromacs-buildroot/usr/bin/./gmxdump_d
  /bin/sh ../../libtool   --mode=install /bin/install -p gmxcheck '/usr/src/tmp/gromacs-buildroot/usr/bin/./gmxcheck_d'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/gmxcheck /usr/src/tmp/gromacs-buildroot/usr/bin/./gmxcheck_d
  /bin/sh ../../libtool   --mode=install /bin/install -p x2top '/usr/src/tmp/gromacs-buildroot/usr/bin/./x2top_d'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/x2top /usr/src/tmp/gromacs-buildroot/usr/bin/./x2top_d
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
Making install in tools
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/lib'
 /bin/sh ../../libtool   --mode=install /bin/install -p   libgmxana_d.la '/usr/src/tmp/gromacs-buildroot/usr/lib'
libtool: install: warning: relinking `libgmxana_d.la'
(cd /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools; /bin/sh ../../libtool  --tag=CC --mode=relink i586-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -version-info 5:0:0 -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o libgmxana_d.la -rpath /usr/lib autocorr.lo expfit.lo polynomials.lo levenmar.lo anadih.lo pp2shift.lo dlist.lo eigio.lo lsq.lo cmat.lo eigensolver.lo nsc.lo hxprops.lo fitahx.lo gmx_analyze.lo gmx_anaeig.lo gmx_angle.lo gmx_bond.lo gmx_bundle.lo gmx_chi.lo gmx_cluster.lo gmx_confrms.lo gmx_covar.lo gmx_current.lo gmx_density.lo gmx_densmap.lo gmx_dih.lo gmx_dielectric.lo gmx_kinetics.lo gmx_spatial.lo gmx_dipoles.lo gmx_disre.lo gmx_dist.lo gmx_dyndom.lo gmx_enemat.lo gmx_energy.lo gmx_lie.lo gmx_filter.lo gmx_gyrate.lo gmx_h2order.lo gmx_hbond.lo gmx_helix.lo gmx_mindist.lo gmx_msd.lo gmx_morph.lo gmx_nmeig.lo gmx_nmens.lo gmx_order.lo gmx_principal.lo gmx_polystat.lo gmx_potential.lo gmx_rama.lo gmx_rdf.lo gmx_rms.lo gmx_rmsdist.lo gmx_rmsf.lo gmx_rotacf.lo gmx_saltbr.lo gmx_sas.lo gmx_sdf.lo gmx_sgangle.lo gmx_sorient.lo gmx_spol.lo gmx_tcaf.lo gmx_traj.lo gmx_velacc.lo gmx_helixorient.lo gmx_clustsize.lo gmx_mdmat.lo gmx_wham.lo correl.lo gmx_sham.lo gmx_nmtraj.lo gmx_trjconv.lo gmx_trjcat.lo gmx_trjorder.lo gmx_xpm2ps.lo gmx_editconf.lo gmx_genbox.lo gmx_genion.lo gmx_genconf.lo gmx_genpr.lo gmx_eneconv.lo gmx_vanhove.lo gmx_wheel.lo addconf.lo calcpot.lo edittop.lo ../gmxlib/libgmx_d.la ../mdlib/libmd_d.la -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte -inst-prefix-dir /usr/src/tmp/gromacs-buildroot)  
i586-alt-linux-gcc -shared  .libs/autocorr.o .libs/expfit.o .libs/polynomials.o .libs/levenmar.o .libs/anadih.o .libs/pp2shift.o .libs/dlist.o .libs/eigio.o .libs/lsq.o .libs/cmat.o .libs/eigensolver.o .libs/nsc.o .libs/hxprops.o .libs/fitahx.o .libs/gmx_analyze.o .libs/gmx_anaeig.o .libs/gmx_angle.o .libs/gmx_bond.o .libs/gmx_bundle.o .libs/gmx_chi.o .libs/gmx_cluster.o .libs/gmx_confrms.o .libs/gmx_covar.o .libs/gmx_current.o .libs/gmx_density.o .libs/gmx_densmap.o .libs/gmx_dih.o .libs/gmx_dielectric.o .libs/gmx_kinetics.o .libs/gmx_spatial.o .libs/gmx_dipoles.o .libs/gmx_disre.o .libs/gmx_dist.o .libs/gmx_dyndom.o .libs/gmx_enemat.o .libs/gmx_energy.o .libs/gmx_lie.o .libs/gmx_filter.o .libs/gmx_gyrate.o .libs/gmx_h2order.o .libs/gmx_hbond.o .libs/gmx_helix.o .libs/gmx_mindist.o .libs/gmx_msd.o .libs/gmx_morph.o .libs/gmx_nmeig.o .libs/gmx_nmens.o .libs/gmx_order.o .libs/gmx_principal.o .libs/gmx_polystat.o .libs/gmx_potential.o .libs/gmx_rama.o .libs/gmx_rdf.o .libs/gmx_rms.o .libs/gmx_rmsdist.o .libs/gmx_rmsf.o .libs/gmx_rotacf.o .libs/gmx_saltbr.o .libs/gmx_sas.o .libs/gmx_sdf.o .libs/gmx_sgangle.o .libs/gmx_sorient.o .libs/gmx_spol.o .libs/gmx_tcaf.o .libs/gmx_traj.o .libs/gmx_velacc.o .libs/gmx_helixorient.o .libs/gmx_clustsize.o .libs/gmx_mdmat.o .libs/gmx_wham.o .libs/correl.o .libs/gmx_sham.o .libs/gmx_nmtraj.o .libs/gmx_trjconv.o .libs/gmx_trjcat.o .libs/gmx_trjorder.o .libs/gmx_xpm2ps.o .libs/gmx_editconf.o .libs/gmx_genbox.o .libs/gmx_genion.o .libs/gmx_genconf.o .libs/gmx_genpr.o .libs/gmx_eneconv.o .libs/gmx_vanhove.o .libs/gmx_wheel.o .libs/addconf.o .libs/calcpot.o .libs/edittop.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/lib/openmpi/lib -L/usr/src/tmp/gromacs-buildroot/usr/lib -L/usr/lib -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -L/usr/src/tmp/gromacs-buildroot/usr/lib/openmpi/lib -lmpi -lopen-pal -lopen-rte  -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wl,-Rpath:/usr/lib/openmpi/lib -Wl,-soname -Wl,libgmxana_d.so.5 -o .libs/libgmxana_d.so.5.0.0
/bin/install -p .libs/libgmxana_d.so.5.0.0T /usr/src/tmp/gromacs-buildroot/usr/lib/libgmxana_d.so.5.0.0
(cd /usr/src/tmp/gromacs-buildroot/usr/lib && { ln -s -f libgmxana_d.so.5.0.0 libgmxana_d.so.5 || { rm -f libgmxana_d.so.5 && ln -s libgmxana_d.so.5.0.0 libgmxana_d.so.5; }; })
(cd /usr/src/tmp/gromacs-buildroot/usr/lib && { ln -s -f libgmxana_d.so.5.0.0 libgmxana_d.so || { rm -f libgmxana_d.so && ln -s libgmxana_d.so.5.0.0 libgmxana_d.so; }; })
/bin/install -p .libs/libgmxana_d.lai /usr/src/tmp/gromacs-buildroot/usr/lib/libgmxana_d.la
libtool: install: warning: remember to run `libtool --finish /usr/lib'
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/bin'
  /bin/sh ../../libtool   --mode=install /bin/install -p do_dssp '/usr/src/tmp/gromacs-buildroot/usr/bin/./do_dssp_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/do_dssp /usr/src/tmp/gromacs-buildroot/usr/bin/./do_dssp_d
  /bin/sh ../../libtool   --mode=install /bin/install -p editconf '/usr/src/tmp/gromacs-buildroot/usr/bin/./editconf_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/editconf /usr/src/tmp/gromacs-buildroot/usr/bin/./editconf_d
  /bin/sh ../../libtool   --mode=install /bin/install -p eneconv '/usr/src/tmp/gromacs-buildroot/usr/bin/./eneconv_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/eneconv /usr/src/tmp/gromacs-buildroot/usr/bin/./eneconv_d
  /bin/sh ../../libtool   --mode=install /bin/install -p genbox '/usr/src/tmp/gromacs-buildroot/usr/bin/./genbox_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/genbox /usr/src/tmp/gromacs-buildroot/usr/bin/./genbox_d
  /bin/sh ../../libtool   --mode=install /bin/install -p genconf '/usr/src/tmp/gromacs-buildroot/usr/bin/./genconf_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/genconf /usr/src/tmp/gromacs-buildroot/usr/bin/./genconf_d
  /bin/sh ../../libtool   --mode=install /bin/install -p genrestr '/usr/src/tmp/gromacs-buildroot/usr/bin/./genrestr_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/genrestr /usr/src/tmp/gromacs-buildroot/usr/bin/./genrestr_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_nmtraj '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_nmtraj_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_nmtraj /usr/src/tmp/gromacs-buildroot/usr/bin/./g_nmtraj_d
  /bin/sh ../../libtool   --mode=install /bin/install -p make_ndx '/usr/src/tmp/gromacs-buildroot/usr/bin/./make_ndx_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/make_ndx /usr/src/tmp/gromacs-buildroot/usr/bin/./make_ndx_d
  /bin/sh ../../libtool   --mode=install /bin/install -p mk_angndx '/usr/src/tmp/gromacs-buildroot/usr/bin/./mk_angndx_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/mk_angndx /usr/src/tmp/gromacs-buildroot/usr/bin/./mk_angndx_d
  /bin/sh ../../libtool   --mode=install /bin/install -p trjcat '/usr/src/tmp/gromacs-buildroot/usr/bin/./trjcat_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/trjcat /usr/src/tmp/gromacs-buildroot/usr/bin/./trjcat_d
  /bin/sh ../../libtool   --mode=install /bin/install -p trjconv '/usr/src/tmp/gromacs-buildroot/usr/bin/./trjconv_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/trjconv /usr/src/tmp/gromacs-buildroot/usr/bin/./trjconv_d
  /bin/sh ../../libtool   --mode=install /bin/install -p trjorder '/usr/src/tmp/gromacs-buildroot/usr/bin/./trjorder_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/trjorder /usr/src/tmp/gromacs-buildroot/usr/bin/./trjorder_d
  /bin/sh ../../libtool   --mode=install /bin/install -p wheel '/usr/src/tmp/gromacs-buildroot/usr/bin/./wheel_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/wheel /usr/src/tmp/gromacs-buildroot/usr/bin/./wheel_d
  /bin/sh ../../libtool   --mode=install /bin/install -p xpm2ps '/usr/src/tmp/gromacs-buildroot/usr/bin/./xpm2ps_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/xpm2ps /usr/src/tmp/gromacs-buildroot/usr/bin/./xpm2ps_d
  /bin/sh ../../libtool   --mode=install /bin/install -p genion '/usr/src/tmp/gromacs-buildroot/usr/bin/./genion_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/genion /usr/src/tmp/gromacs-buildroot/usr/bin/./genion_d
  /bin/sh ../../libtool   --mode=install /bin/install -p anadock '/usr/src/tmp/gromacs-buildroot/usr/bin/./anadock_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/anadock /usr/src/tmp/gromacs-buildroot/usr/bin/./anadock_d
  /bin/sh ../../libtool   --mode=install /bin/install -p make_edi '/usr/src/tmp/gromacs-buildroot/usr/bin/./make_edi_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/make_edi /usr/src/tmp/gromacs-buildroot/usr/bin/./make_edi_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_analyze '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_analyze_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_analyze /usr/src/tmp/gromacs-buildroot/usr/bin/./g_analyze_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_anaeig '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_anaeig_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_anaeig /usr/src/tmp/gromacs-buildroot/usr/bin/./g_anaeig_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_angle '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_angle_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_angle /usr/src/tmp/gromacs-buildroot/usr/bin/./g_angle_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_bond '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_bond_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_bond /usr/src/tmp/gromacs-buildroot/usr/bin/./g_bond_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_bundle '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_bundle_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_bundle /usr/src/tmp/gromacs-buildroot/usr/bin/./g_bundle_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_chi '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_chi_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_chi /usr/src/tmp/gromacs-buildroot/usr/bin/./g_chi_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_cluster '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_cluster_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_cluster /usr/src/tmp/gromacs-buildroot/usr/bin/./g_cluster_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_confrms '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_confrms_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_confrms /usr/src/tmp/gromacs-buildroot/usr/bin/./g_confrms_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_covar '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_covar_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_covar /usr/src/tmp/gromacs-buildroot/usr/bin/./g_covar_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_current '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_current_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_current /usr/src/tmp/gromacs-buildroot/usr/bin/./g_current_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_density '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_density_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_density /usr/src/tmp/gromacs-buildroot/usr/bin/./g_density_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_densmap '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_densmap_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_densmap /usr/src/tmp/gromacs-buildroot/usr/bin/./g_densmap_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_dih '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_dih_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_dih /usr/src/tmp/gromacs-buildroot/usr/bin/./g_dih_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_dielectric '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_dielectric_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_dielectric /usr/src/tmp/gromacs-buildroot/usr/bin/./g_dielectric_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_helixorient '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_helixorient_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_helixorient /usr/src/tmp/gromacs-buildroot/usr/bin/./g_helixorient_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_principal '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_principal_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_principal /usr/src/tmp/gromacs-buildroot/usr/bin/./g_principal_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_dipoles '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_dipoles_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_dipoles /usr/src/tmp/gromacs-buildroot/usr/bin/./g_dipoles_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_disre '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_disre_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_disre /usr/src/tmp/gromacs-buildroot/usr/bin/./g_disre_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_dist '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_dist_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_dist /usr/src/tmp/gromacs-buildroot/usr/bin/./g_dist_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_dyndom '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_dyndom_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_dyndom /usr/src/tmp/gromacs-buildroot/usr/bin/./g_dyndom_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_enemat '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_enemat_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_enemat /usr/src/tmp/gromacs-buildroot/usr/bin/./g_enemat_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_energy '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_energy_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_energy /usr/src/tmp/gromacs-buildroot/usr/bin/./g_energy_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_lie '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_lie_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_lie /usr/src/tmp/gromacs-buildroot/usr/bin/./g_lie_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_filter '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_filter_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_filter /usr/src/tmp/gromacs-buildroot/usr/bin/./g_filter_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_gyrate '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_gyrate_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_gyrate /usr/src/tmp/gromacs-buildroot/usr/bin/./g_gyrate_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_h2order '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_h2order_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_h2order /usr/src/tmp/gromacs-buildroot/usr/bin/./g_h2order_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_hbond '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_hbond_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_hbond /usr/src/tmp/gromacs-buildroot/usr/bin/./g_hbond_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_helix '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_helix_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_helix /usr/src/tmp/gromacs-buildroot/usr/bin/./g_helix_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_mindist '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_mindist_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_mindist /usr/src/tmp/gromacs-buildroot/usr/bin/./g_mindist_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_msd '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_msd_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_msd /usr/src/tmp/gromacs-buildroot/usr/bin/./g_msd_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_morph '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_morph_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_morph /usr/src/tmp/gromacs-buildroot/usr/bin/./g_morph_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_nmeig '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_nmeig_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_nmeig /usr/src/tmp/gromacs-buildroot/usr/bin/./g_nmeig_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_nmens '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_nmens_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_nmens /usr/src/tmp/gromacs-buildroot/usr/bin/./g_nmens_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_order '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_order_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_order /usr/src/tmp/gromacs-buildroot/usr/bin/./g_order_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_polystat '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_polystat_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_polystat /usr/src/tmp/gromacs-buildroot/usr/bin/./g_polystat_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_potential '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_potential_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_potential /usr/src/tmp/gromacs-buildroot/usr/bin/./g_potential_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_rama '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_rama_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_rama /usr/src/tmp/gromacs-buildroot/usr/bin/./g_rama_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_rdf '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_rdf_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_rdf /usr/src/tmp/gromacs-buildroot/usr/bin/./g_rdf_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_rms '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_rms_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_rms /usr/src/tmp/gromacs-buildroot/usr/bin/./g_rms_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_rmsdist '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_rmsdist_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_rmsdist /usr/src/tmp/gromacs-buildroot/usr/bin/./g_rmsdist_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_rmsf '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_rmsf_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_rmsf /usr/src/tmp/gromacs-buildroot/usr/bin/./g_rmsf_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_rotacf '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_rotacf_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_rotacf /usr/src/tmp/gromacs-buildroot/usr/bin/./g_rotacf_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_saltbr '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_saltbr_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_saltbr /usr/src/tmp/gromacs-buildroot/usr/bin/./g_saltbr_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_sas '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_sas_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_sas /usr/src/tmp/gromacs-buildroot/usr/bin/./g_sas_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_sgangle '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_sgangle_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_sgangle /usr/src/tmp/gromacs-buildroot/usr/bin/./g_sgangle_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_sham '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_sham_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_sham /usr/src/tmp/gromacs-buildroot/usr/bin/./g_sham_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_sorient '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_sorient_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_sorient /usr/src/tmp/gromacs-buildroot/usr/bin/./g_sorient_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_spol '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_spol_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_spol /usr/src/tmp/gromacs-buildroot/usr/bin/./g_spol_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_sdf '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_sdf_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_sdf /usr/src/tmp/gromacs-buildroot/usr/bin/./g_sdf_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_spatial '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_spatial_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_spatial /usr/src/tmp/gromacs-buildroot/usr/bin/./g_spatial_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_tcaf '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_tcaf_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_tcaf /usr/src/tmp/gromacs-buildroot/usr/bin/./g_tcaf_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_traj '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_traj_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_traj /usr/src/tmp/gromacs-buildroot/usr/bin/./g_traj_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_vanhove '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_vanhove_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_vanhove /usr/src/tmp/gromacs-buildroot/usr/bin/./g_vanhove_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_velacc '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_velacc_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_velacc /usr/src/tmp/gromacs-buildroot/usr/bin/./g_velacc_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_clustsize '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_clustsize_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_clustsize /usr/src/tmp/gromacs-buildroot/usr/bin/./g_clustsize_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_mdmat '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_mdmat_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_mdmat /usr/src/tmp/gromacs-buildroot/usr/bin/./g_mdmat_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_wham '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_wham_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_wham /usr/src/tmp/gromacs-buildroot/usr/bin/./g_wham_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_kinetics '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_kinetics_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_kinetics /usr/src/tmp/gromacs-buildroot/usr/bin/./g_kinetics_d
  /bin/sh ../../libtool   --mode=install /bin/install -p sigeps '/usr/src/tmp/gromacs-buildroot/usr/bin/./sigeps_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/sigeps /usr/src/tmp/gromacs-buildroot/usr/bin/./sigeps_d
make  install-exec-hook
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
libname="libgmxana_d"; \
nompi="`echo $libname | sed -e 's,_mpi,,'`"; \
libdir="/usr/lib"; \
if echo $libname | grep mpi >/dev/null ; then \
  (cd $libdir && test -e $libname.a -a ! -e $nompi.a && ln -s $libname.a $nompi.a ; exit 0); \
  (cd $libdir && test -e $libname.so -a ! -e $nompi.so && ln -s $libname.so $nompi.so ; exit 0); \
fi; 
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
Making install in ngmx
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/bin'
  /bin/sh ../../libtool   --mode=install /bin/install -p ngmx '/usr/src/tmp/gromacs-buildroot/usr/bin/./ngmx_d'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/ngmx /usr/src/tmp/gromacs-buildroot/usr/bin/./ngmx_d
  /bin/sh ../../libtool   --mode=install /bin/install -p xrama '/usr/src/tmp/gromacs-buildroot/usr/bin/./xrama_d'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/xrama /usr/src/tmp/gromacs-buildroot/usr/bin/./xrama_d
  /bin/sh ../../libtool   --mode=install /bin/install -p highway '/usr/src/tmp/gromacs-buildroot/usr/bin/./highway_d'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/highway /usr/src/tmp/gromacs-buildroot/usr/bin/./highway_d
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
Making install in contrib
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/contrib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/contrib'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/contrib'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/contrib'
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src'
make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src'
Making install in admin
make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/admin'
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/admin'
make[2]: Nothing to be done for 'install-exec-am'.
make[2]: Nothing to be done for 'install-data-am'.
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/admin'
make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/admin'
Making install in scripts
make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/scripts'
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/scripts'
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/bin'
 /bin/install -p GMXRC GMXRC.csh GMXRC.bash GMXRC.zsh '/usr/src/tmp/gromacs-buildroot/usr/bin'
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/bin'
 /bin/install -p ../../scripts/completion.csh ../../scripts/completion.bash ../../scripts/completion.zsh ../../scripts/demux.pl ../../scripts/xplor2gmx.pl '/usr/src/tmp/gromacs-buildroot/usr/bin'
make[2]: Nothing to be done for 'install-data-am'.
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/scripts'
make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/scripts'
Making install in share
make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share'
Making install in top
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/top'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/top'
make[3]: Nothing to be done for 'install-exec-am'.
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/top'
 /bin/install -p -m 644 ../../../share/top/ffgmx.itp ../../../share/top/ffgmxnb.itp ../../../share/top/ffgmxbon.itp ../../../share/top/ffgmx.atp ../../../share/top/ffgmx.hdb ../../../share/top/ffgmx.rtp ../../../share/top/ffgmx-c.tdb ../../../share/top/ffgmx-n.tdb ../../../share/top/ffgmx2.itp ../../../share/top/ffgmx2nb.itp ../../../share/top/ffgmx2bon.itp ../../../share/top/ffgmx2.atp ../../../share/top/ffgmx2.hdb ../../../share/top/ffgmx2.rtp ../../../share/top/ffgmx2-c.tdb ../../../share/top/ffgmx2-n.tdb ../../../share/top/ffG43a1.itp ../../../share/top/ffG43a1nb.itp ../../../share/top/ffG43a1bon.itp ../../../share/top/ffG43a1.atp ../../../share/top/ffG43a1.hdb ../../../share/top/ffG43a1.rtp ../../../share/top/ffG43a1-c.tdb ../../../share/top/ffG43a1-n.tdb ../../../share/top/ffG43a2.itp ../../../share/top/ffG43a2nb.itp ../../../share/top/ffG43a2bon.itp ../../../share/top/ffG43a2.atp ../../../share/top/ffG43a2.hdb ../../../share/top/ffG43a2.rtp ../../../share/top/ffG43a2-c.tdb ../../../share/top/ffG43a2-n.tdb ../../../share/top/ffgmx.ddb ../../../share/top/ffgmx2.ddb ../../../share/top/ffG43a1.ddb ../../../share/top/ffG43a2.ddb ../../../share/top/ffG45a3-c.tdb ../../../share/top/ffG45a3.atp ../../../share/top/ffG45a3.hdb ../../../share/top/ffG45a3.rtp '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/top'
 /bin/install -p -m 644 ../../../share/top/ffG45a3nb.itp ../../../share/top/ffG45a3-n.tdb ../../../share/top/ffG45a3.ddb ../../../share/top/ffG45a3.itp ../../../share/top/ffG45a3bon.itp ../../../share/top/ffG53a5-c.tdb ../../../share/top/ffG53a5.atp ../../../share/top/ffG53a5.hdb ../../../share/top/ffG53a5.rtp ../../../share/top/ffG53a5nb.itp ../../../share/top/ffG53a5-n.tdb ../../../share/top/ffG53a5.ddb ../../../share/top/ffG53a5.itp ../../../share/top/ffG53a5bon.itp ../../../share/top/ffG53a5.n2t ../../../share/top/ffG53a6-c.tdb ../../../share/top/ffG53a6.atp ../../../share/top/ffG53a6.hdb ../../../share/top/ffG53a6.rtp ../../../share/top/ffG53a6nb.itp ../../../share/top/ffG53a6-n.tdb ../../../share/top/ffG53a6.ddb ../../../share/top/ffG53a6.itp ../../../share/top/ffG53a6bon.itp ../../../share/top/ffoplsaa.atp ../../../share/top/ffoplsaa.itp ../../../share/top/ffoplsaabon.itp ../../../share/top/ffoplsaanb.itp ../../../share/top/ffoplsaa.hdb ../../../share/top/ffoplsaa-n.tdb ../../../share/top/ffoplsaa-c.tdb ../../../share/top/ffoplsaa.rtp ../../../share/top/ffoplsaa.ddb ../../../share/top/ffoplsaa.n2t ../../../share/top/ffencads-c.tdb ../../../share/top/ffencads.itp ../../../share/top/ffencadv-c.tdb ../../../share/top/ffencadv.itp ../../../share/top/ffencads-n.tdb ../../../share/top/ffencads.rtp '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/top'
 /bin/install -p -m 644 ../../../share/top/ffencadv-n.tdb ../../../share/top/ffencadv.rtp ../../../share/top/ffencads.atp ../../../share/top/ffencadsbon.itp ../../../share/top/ffencadv.atp ../../../share/top/ffencadvbon.itp ../../../share/top/ffencads.hdb ../../../share/top/ffencadsnb.itp ../../../share/top/ffencadv.hdb ../../../share/top/ffencadvnb.itp ../../../share/top/1mlg.itp ../../../share/top/2mlg.itp ../../../share/top/benzamide.itp ../../../share/top/bondadd.itp ../../../share/top/buck.itp ../../../share/top/decane.itp ../../../share/top/dlg.itp ../../../share/top/dmso.itp ../../../share/top/fa.itp ../../../share/top/ff_dum.itp ../../../share/top/flexspc.itp ../../../share/top/flexspce.itp ../../../share/top/flexwat-ferguson.itp ../../../share/top/h2p4o13.itp ../../../share/top/h2p8o25.itp ../../../share/top/h2po4.itp ../../../share/top/ions.itp ../../../share/top/methanol.itp ../../../share/top/spc.itp ../../../share/top/spce.itp ../../../share/top/tfe.itp ../../../share/top/tip3p.itp ../../../share/top/tip4p.itp ../../../share/top/urea.itp ../../../share/top/dgsolv.dat ../../../share/top/electroneg.dat ../../../share/top/dec50.gro ../../../share/top/dmso.gro ../../../share/top/spc216.gro ../../../share/top/tip4p.gro '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/top'
 /bin/install -p -m 644 ../../../share/top/urea+h2o.gro ../../../share/top/f3c.itp ../../../share/top/aminoacids.dat ../../../share/top/atommass.dat ../../../share/top/bromacs.dat ../../../share/top/ca-shift.dat ../../../share/top/cb-shift.dat ../../../share/top/co-shift.dat ../../../share/top/edissoc.dat ../../../share/top/FF.dat ../../../share/top/gurgle.dat ../../../share/top/ha-shift.dat ../../../share/top/links.dat ../../../share/top/phbres.dat ../../../share/top/random.dat ../../../share/top/refi_aa.dat ../../../share/top/specbond.dat ../../../share/top/surface.dat ../../../share/top/vdwradii.dat ../../../share/top/xlateat.dat ../../../share/top/highway.dat ../../../share/top/export.dlg ../../../share/top/bonds.dlg ../../../share/top/ss.map ../../../share/top/ps.m2p ../../../share/top/table6-10.xvg ../../../share/top/table6-11.xvg ../../../share/top/table6-12.xvg ../../../share/top/table6-8.xvg ../../../share/top/table6-9.xvg ../../../share/top/atom_nom.tbl ../../../share/top/gromacs.dtd ../../../share/top/tip5p.gro ../../../share/top/tip5p.itp ../../../share/top/sw.itp ../../../share/top/elements.dat '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/top'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/top'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/top'
Making install in tutor
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/tutor'
Making install in nmr1
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/tutor/nmr1'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/tutor/nmr1'
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 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/nmr1'
 /bin/install -p -m 644 ../../../../share/tutor/nmr1/conf.gro ../../../../share/tutor/nmr1/grompp.mdp ../../../../share/tutor/nmr1/pep.pdb ../../../../share/tutor/nmr1/topol.top '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/nmr1'
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/tutor/nmr1'
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Making install in nmr2
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/tutor/nmr2'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/tutor/nmr2'
make[4]: Nothing to be done for 'install-exec-am'.
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/nmr2'
 /bin/install -p -m 644 ../../../../share/tutor/nmr2/conf.gro ../../../../share/tutor/nmr2/genconf.gcp ../../../../share/tutor/nmr2/grompp.mdp ../../../../share/tutor/nmr2/pep.pdb ../../../../share/tutor/nmr2/topol.top '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/nmr2'
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/tutor/nmr2'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/tutor/nmr2'
Making install in speptide
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/tutor/speptide'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/tutor/speptide'
make[4]: Nothing to be done for 'install-exec-am'.
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/speptide'
 /bin/install -p -m 644 ../../../../share/tutor/speptide/em.mdp ../../../../share/tutor/speptide/full.mdp ../../../../share/tutor/speptide/pr.mdp ../../../../share/tutor/speptide/speptide.pdb '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/speptide'
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/tutor/speptide'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/tutor/speptide'
Making install in water
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/tutor/water'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/tutor/water'
make[4]: Nothing to be done for 'install-exec-am'.
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/water'
 /bin/install -p -m 644 ../../../../share/tutor/water/index.ndx ../../../../share/tutor/water/conf.gro ../../../../share/tutor/water/spc216.pdb ../../../../share/tutor/water/grompp.mdp ../../../../share/tutor/water/topol.top '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/water'
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/tutor/water'
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Making install in gmxdemo
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/tutor/gmxdemo'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/tutor/gmxdemo'
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 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/gmxdemo'
 /bin/install -p -m 644 ../../../../share/tutor/gmxdemo/cpeptide.pdb '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/gmxdemo'
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/gmxdemo'
 /bin/install -p ../../../../share/tutor/gmxdemo/demo '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/gmxdemo/./demo_d'
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/tutor/gmxdemo'
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Making install in methanol
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/tutor/methanol'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/tutor/methanol'
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 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/methanol'
 /bin/install -p -m 644 ../../../../share/tutor/methanol/index.ndx ../../../../share/tutor/methanol/conf.gro ../../../../share/tutor/methanol/methanol.pdb ../../../../share/tutor/methanol/grompp.mdp ../../../../share/tutor/methanol/topol.top ../../../../share/tutor/methanol/methanol.itp '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/methanol'
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/tutor/methanol'
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Making install in mixed
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/tutor/mixed'
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 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/mixed'
 /bin/install -p -m 644 ../../../../share/tutor/mixed/index.ndx ../../../../share/tutor/mixed/conf.gro ../../../../share/tutor/mixed/mixed.pdb ../../../../share/tutor/mixed/grompp.mdp ../../../../share/tutor/mixed/topol.top '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/mixed'
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/tutor/mixed'
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make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/tutor'
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Making install in template
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 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/template'
 /bin/install -p -m 644 ../../../share/template/template.c ../../../share/template/README Makefile.i586-alt-linux-gnu_double '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/template'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/template'
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Making install in html
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/html'
Making install in .
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/html'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/html'
make[4]: Nothing to be done for 'install-exec-am'.
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/html'
 /bin/install -p -m 644 ../../../share/html/online.html ../../../share/html/gmxfaq.html '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/html'
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/html'
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Making install in images
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/html/images'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/html/images'
make[4]: Nothing to be done for 'install-exec-am'.
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/html/images'
 /bin/install -p -m 644 ../../../../share/html/images/features.gif ../../../../share/html/images/flow_leftrightup.gif ../../../../share/html/images/flow_vrule.gif ../../../../share/html/images/flow_down.gif ../../../../share/html/images/flow_leftup.gif ../../../../share/html/images/links.gif ../../../../share/html/images/articles.gif ../../../../share/html/images/flow_downleft.gif ../../../../share/html/images/flow_right+left.gif ../../../../share/html/images/mail.gif ../../../../share/html/images/bench.gif ../../../../share/html/images/flow_hline.gif ../../../../share/html/images/flow_right.gif ../../../../share/html/images/manual.gif ../../../../share/html/images/charts_down.gif ../../../../share/html/images/flow_left.gif ../../../../share/html/images/flow_rightleftdown.gif ../../../../share/html/images/gmxlogo_small.jpg ../../../../share/html/images/charts_up.gif ../../../../share/html/images/flow_leftright.gif ../../../../share/html/images/flow_uprightleft.gif ../../../../share/html/images/software.gif ../../../../share/html/images/faq.gif ../../../../share/html/images/flow_leftrightdown.gif ../../../../share/html/images/flow_vline.gif ../../../../share/html/images/topologies.gif ../../../../share/html/images/plotje.gif ../../../../share/html/images/xvgr.gif ../../../../share/html/images/1ctf-0.jpg ../../../../share/html/images/1ctf-0.2.jpg ../../../../share/html/images/1ctf-0.5.jpg ../../../../share/html/images/1ctf-1.jpg ../../../../share/html/images/1ctf-4.jpg ../../../../share/html/images/1ctf-10.jpg '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/html/images'
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/html/images'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/html/images'
Making install in online
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/html/online'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/html/online'
make[4]: Nothing to be done for 'install-exec-am'.
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/html/online'
 /bin/install -p -m 644 ../../../../share/html/online/cpt.html ../../../../share/html/online/dat.html ../../../../share/html/online/g_disre.html ../../../../share/html/online/g_sorient.html ../../../../share/html/online/ndx.html ../../../../share/html/online/dlg.html ../../../../share/html/online/g_dist.html ../../../../share/html/online/g_tcaf.html ../../../../share/html/online/ngmx.html ../../../../share/html/online/do_dssp.html ../../../../share/html/online/g_dyndom.html ../../../../share/html/online/g_traj.html ../../../../share/html/online/edi.html ../../../../share/html/online/g_enemat.html ../../../../share/html/online/g_velacc.html ../../../../share/html/online/options.html ../../../../share/html/online/editconf.html ../../../../share/html/online/g_energy.html ../../../../share/html/online/genbox.html ../../../../share/html/online/out.html ../../../../share/html/online/edo.html ../../../../share/html/online/g_gyrate.html ../../../../share/html/online/genconf.html ../../../../share/html/online/pdb.html ../../../../share/html/online/edr.html ../../../../share/html/online/g_h2order.html ../../../../share/html/online/genion.html ../../../../share/html/online/pdb2gmx.html ../../../../share/html/online/ene.html ../../../../share/html/online/g_hbond.html ../../../../share/html/online/genpr.html ../../../../share/html/online/protonate.html ../../../../share/html/online/eneconv.html ../../../../share/html/online/g_helix.html ../../../../share/html/online/getting_started.html ../../../../share/html/online/rtp.html ../../../../share/html/online/eps.html ../../../../share/html/online/g_lie.html ../../../../share/html/online/gmxcheck.html ../../../../share/html/online/tex.html '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/html/online'
 /bin/install -p -m 644 ../../../../share/html/online/files.html ../../../../share/html/online/g_mdmat.html ../../../../share/html/online/gmxdump.html ../../../../share/html/online/top.html ../../../../share/html/online/flow.html ../../../../share/html/online/g_mindist.html ../../../../share/html/online/gro.html ../../../../share/html/online/tpa.html ../../../../share/html/online/g87.html ../../../../share/html/online/g_morph.html ../../../../share/html/online/grompp.html ../../../../share/html/online/tpb.html ../../../../share/html/online/g96.html ../../../../share/html/online/g_msd.html ../../../../share/html/online/hat.html ../../../../share/html/online/tpbconv.html ../../../../share/html/online/g_anaeig.html ../../../../share/html/online/g_nmeig.html ../../../../share/html/online/highway.html ../../../../share/html/online/tpr.html ../../../../share/html/online/g_analyze.html ../../../../share/html/online/g_nmens.html ../../../../share/html/online/include_bot.html ../../../../share/html/online/trj.html ../../../../share/html/online/g_angle.html ../../../../share/html/online/g_order.html ../../../../share/html/online/include_top.html ../../../../share/html/online/trjcat.html ../../../../share/html/online/g_bond.html ../../../../share/html/online/g_potential.html ../../../../share/html/online/itp.html ../../../../share/html/online/trjconv.html ../../../../share/html/online/g_bundle.html ../../../../share/html/online/g_rama.html ../../../../share/html/online/log.html ../../../../share/html/online/trjorder.html ../../../../share/html/online/g_chi.html ../../../../share/html/online/g_rdf.html ../../../../share/html/online/m2p.html ../../../../share/html/online/trr.html '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/html/online'
 /bin/install -p -m 644 ../../../../share/html/online/g_cluster.html ../../../../share/html/online/g_rms.html ../../../../share/html/online/make_ndx.html ../../../../share/html/online/wheel.html ../../../../share/html/online/g_confrms.html ../../../../share/html/online/g_rmsdist.html ../../../../share/html/online/map.html ../../../../share/html/online/x2top.html ../../../../share/html/online/g_covar.html ../../../../share/html/online/g_rmsf.html ../../../../share/html/online/mdp.html ../../../../share/html/online/xpm.html ../../../../share/html/online/g_density.html ../../../../share/html/online/g_rotacf.html ../../../../share/html/online/mdp_opt.html ../../../../share/html/online/xpm2ps.html ../../../../share/html/online/g_dielectric.html ../../../../share/html/online/g_saltbr.html ../../../../share/html/online/mdrun.html ../../../../share/html/online/xrama.html ../../../../share/html/online/g_dih.html ../../../../share/html/online/g_sas.html ../../../../share/html/online/mk_angndx.html ../../../../share/html/online/xtc.html ../../../../share/html/online/g_dipoles.html ../../../../share/html/online/g_sgangle.html ../../../../share/html/online/mtx.html ../../../../share/html/online/xvg.html ../../../../share/html/online/g_densmap.html ../../../../share/html/online/g_sham.html ../../../../share/html/online/make_edi.html ../../../../share/html/online/style.css ../../../../share/html/online/water.html ../../../../share/html/online/gmxdemo.html ../../../../share/html/online/speptide.html ../../../../share/html/online/yourown.html ../../../../share/html/online/methanol.html ../../../../share/html/online/mixed.html ../../../../share/html/online/protunf.html '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/html/online'
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/html/online'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/html/online'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/html'
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share'
make[3]: Nothing to be done for 'install-exec-am'.
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make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share'
make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share'
Making install in man
make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/man'
Making install in man1
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/man/man1'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/man/man1'
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 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1'
 /bin/install -p -m 644 '../../../man/man1/anadock.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/anadock_d.1'
 /bin/install -p -m 644 '../../../man/man1/do_dssp.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/do_dssp_d.1'
 /bin/install -p -m 644 '../../../man/man1/editconf.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/editconf_d.1'
 /bin/install -p -m 644 '../../../man/man1/eneconv.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/eneconv_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_anaeig.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_anaeig_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_analyze.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_analyze_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_angle.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_angle_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_bond.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_bond_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_bundle.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_bundle_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_chi.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_chi_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_cluster.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_cluster_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_clustsize.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_clustsize_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_confrms.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_confrms_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_covar.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_covar_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_current.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_current_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_density.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_density_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_densmap.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_densmap_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_dielectric.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_dielectric_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_dih.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_dih_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_dipoles.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_dipoles_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_disre.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_disre_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_dist.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_dist_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_dyndom.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_dyndom_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_enemat.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_enemat_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_energy.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_energy_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_filter.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_filter_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_gyrate.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_gyrate_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_h2order.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_h2order_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_hbond.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_hbond_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_helix.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_helix_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_helixorient.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_helixorient_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_kinetics.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_kinetics_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_lie.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_lie_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_mdmat.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_mdmat_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_mindist.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_mindist_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_morph.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_morph_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_msd.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_msd_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_nmeig.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_nmeig_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_nmens.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_nmens_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_nmtraj.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_nmtraj_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_order.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_order_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_polystat.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_polystat_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_potential.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_potential_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_principal.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_principal_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_rama.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_rama_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_rdf.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_rdf_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_rms.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_rms_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_rmsdist.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_rmsdist_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_rmsf.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_rmsf_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_rotacf.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_rotacf_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_saltbr.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_saltbr_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_sas.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_sas_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_sdf.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_sdf_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_sgangle.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_sgangle_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_sham.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_sham_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_sorient.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_sorient_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_spatial.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_spatial_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_spol.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_spol_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_tcaf.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_tcaf_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_traj.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_traj_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_vanhove.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_vanhove_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_velacc.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_velacc_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_wham.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_wham_d.1'
 /bin/install -p -m 644 '../../../man/man1/gen_table.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/gen_table_d.1'
 /bin/install -p -m 644 '../../../man/man1/genbox.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/genbox_d.1'
 /bin/install -p -m 644 '../../../man/man1/genconf.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/genconf_d.1'
 /bin/install -p -m 644 '../../../man/man1/genion.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/genion_d.1'
 /bin/install -p -m 644 '../../../man/man1/genrestr.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/genrestr_d.1'
 /bin/install -p -m 644 '../../../man/man1/gmxcheck.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/gmxcheck_d.1'
 /bin/install -p -m 644 '../../../man/man1/gmxdump.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/gmxdump_d.1'
 /bin/install -p -m 644 '../../../man/man1/grompp.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/grompp_d.1'
 /bin/install -p -m 644 '../../../man/man1/highway.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/highway_d.1'
 /bin/install -p -m 644 '../../../man/man1/make_edi.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/make_edi_d.1'
 /bin/install -p -m 644 '../../../man/man1/make_ndx.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/make_ndx_d.1'
 /bin/install -p -m 644 '../../../man/man1/mdrun.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/mdrun_d.1'
 /bin/install -p -m 644 '../../../man/man1/mk_angndx.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/mk_angndx_d.1'
 /bin/install -p -m 644 '../../../man/man1/ngmx.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/ngmx_d.1'
 /bin/install -p -m 644 '../../../man/man1/pdb2gmx.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/pdb2gmx_d.1'
 /bin/install -p -m 644 '../../../man/man1/protonate.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/protonate_d.1'
 /bin/install -p -m 644 '../../../man/man1/sigeps.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/sigeps_d.1'
 /bin/install -p -m 644 '../../../man/man1/tpbconv.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/tpbconv_d.1'
 /bin/install -p -m 644 '../../../man/man1/trjcat.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/trjcat_d.1'
 /bin/install -p -m 644 '../../../man/man1/trjconv.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/trjconv_d.1'
 /bin/install -p -m 644 '../../../man/man1/trjorder.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/trjorder_d.1'
 /bin/install -p -m 644 '../../../man/man1/wheel.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/wheel_d.1'
 /bin/install -p -m 644 '../../../man/man1/x2top.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/x2top_d.1'
 /bin/install -p -m 644 '../../../man/man1/xpm2ps.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/xpm2ps_d.1'
 /bin/install -p -m 644 '../../../man/man1/xrama.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/xrama_d.1'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/man/man1'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/man/man1'
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/man'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/man'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/man'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/man'
make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/man'
make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double'
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double'
make  install-exec-hook
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double'

GROMACS is installed under /usr.
Make sure to update your PATH and MANPATH to find the
programs and unix manual pages, and possibly LD_LIBRARY_PATH
or /etc/ld.so.conf if you are using dynamic libraries.

Please run "make tests" now to verify your installation.

If you want links to the executables in /usr/local/bin,
you can issue "make links" now.
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double'
make[2]: Nothing to be done for 'install-data-am'.
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double'
make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double'
make: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double'
+ popd
~/RPM/BUILD/gromacs-4.0.7
+ pushd mpi-single
~/RPM/BUILD/gromacs-4.0.7/mpi-single ~/RPM/BUILD/gromacs-4.0.7
+ make 'INSTALL=/bin/install -p' install DESTDIR=/usr/src/tmp/gromacs-buildroot
make: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single'
Making install in include
make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/include'
Making install in .
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/include'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/include'
make[3]: Nothing to be done for 'install-exec-am'.
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/include/gromacs'
 /bin/install -p -m 644 ../../include/3dview.h ../../include/assert.h ../../include/atomprop.h ../../include/bondf.h ../../include/calcgrid.h ../../include/calch.h ../../include/calcmu.h ../../include/checkpoint.h ../../include/confio.h ../../include/constr.h ../../include/copyrite.h ../../include/coulomb.h ../../include/dihre.h ../../include/disre.h ../../include/domdec.h ../../include/domdec_network.h ../../include/do_fit.h ../../include/ebin.h ../../include/edsam.h ../../include/enxio.h ../../include/gmx_fatal.h ../../include/ffscanf.h ../../include/fftgrid.h ../../include/filenm.h ../../include/force.h ../../include/futil.h ../../include/gbutil.h ../../include/gmx_ana.h ../../include/gmx_arpack.h ../../include/gmx_blas.h ../../include/gmxcomplex.h ../../include/gmx_cyclecounter.h ../../include/gmxfio.h ../../include/gmx_fft.h ../../include/gmx_lapack.h ../../include/gmx_random.h ../../include/gmx_parallel_3dfft.h ../../include/gmx_system_xdr.h ../../include/gmx_thread.h ../../include/gmx_wallcycle.h '/usr/src/tmp/gromacs-buildroot/usr/include/gromacs'
 /bin/install -p -m 644 ../../include/gpp_atomtype.h ../../include/gpp_nextnb.h ../../include/grompp.h ../../include/gstat.h ../../include/index.h ../../include/invblock.h ../../include/macros.h ../../include/magic.h ../../include/main.h ../../include/maths.h ../../include/matio.h ../../include/mdatoms.h ../../include/mdebin.h ../../include/mdrun.h ../../include/mpelogging.h ../../include/mshift.h ../../include/mtop_util.h ../../include/mtxio.h ../../include/mvdata.h ../../include/names.h ../../include/network.h ../../include/nonbonded.h ../../include/nrama.h ../../include/nrjac.h ../../include/nrnb.h ../../include/nsgrid.h ../../include/ns.h ../../include/orires.h ../../include/partdec.h ../../include/pbc.h ../../include/pdbio.h ../../include/pdebug.h ../../include/perf_est.h ../../include/physics.h ../../include/pme.h ../../include/pppm.h ../../include/princ.h ../../include/pull.h ../../include/qmmm.h ../../include/random.h '/usr/src/tmp/gromacs-buildroot/usr/include/gromacs'
 /bin/install -p -m 644 ../../include/rbin.h ../../include/rdgroup.h ../../include/readcomp.h ../../include/readinp.h ../../include/reorder.h ../../include/rmpbc.h ../../include/shellfc.h ../../include/shift.h ../../include/smalloc.h ../../include/sortwater.h ../../include/sparsematrix.h ../../include/split.h ../../include/splitter.h ../../include/statusio.h ../../include/statutil.h ../../include/strdb.h ../../include/string2.h ../../include/struc2.h ../../include/symtab.h ../../include/sysstuff.h ../../include/tags.h ../../include/tgroup.h ../../include/topsort.h ../../include/tpxio.h ../../include/transfer.h ../../include/trnio.h ../../include/txtdump.h ../../include/typedefs.h ../../include/update.h ../../include/utils.h ../../include/vcm.h ../../include/vec.h ../../include/viewit.h ../../include/vsite.h ../../include/wgms.h ../../include/wman.h ../../include/writeps.h ../../include/xdrf.h ../../include/xtcio.h ../../include/xvgr.h '/usr/src/tmp/gromacs-buildroot/usr/include/gromacs'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/include'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/include'
Making install in types
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/include/types'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/include/types'
make[3]: Nothing to be done for 'install-exec-am'.
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/include/gromacs/types'
 /bin/install -p -m 644 ../../../include/types/atoms.h ../../../include/types/forcerec.h ../../../include/types/ifunc.h ../../../include/types/mdatom.h ../../../include/types/simple.h ../../../include/types/block.h ../../../include/types/constr.h ../../../include/types/energy.h ../../../include/types/graph.h ../../../include/types/inputrec.h ../../../include/types/nblist.h ../../../include/types/ns.h ../../../include/types/nsgrid.h ../../../include/types/symtab.h ../../../include/types/commrec.h ../../../include/types/enums.h ../../../include/types/group.h ../../../include/types/ishift.h ../../../include/types/nbslist.h ../../../include/types/topology.h ../../../include/types/fcdata.h ../../../include/types/filenm.h ../../../include/types/idef.h ../../../include/types/matrix.h ../../../include/types/nrnb.h ../../../include/types/trx.h ../../../include/types/state.h ../../../include/types/pbc.h ../../../include/types/qmmmrec.h ../../../include/types/shellfc.h '/usr/src/tmp/gromacs-buildroot/usr/include/gromacs/types'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/include/types'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/include/types'
make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/include'
Making install in src
make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src'
Making install in gmxlib
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
Making install in nonbonded
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded'
Making install in nb_kernel_ia32_sse
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
make[5]: Nothing to be done for 'install-exec-am'.
make[5]: Nothing to be done for 'install-data-am'.
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
Making install in nb_kernel_ia32_3dnow
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow'
make[5]: Nothing to be done for 'install-exec-am'.
make[5]: Nothing to be done for 'install-data-am'.
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow'
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow'
Making install in nb_kernel
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make  install-am
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Nothing to be done for 'install-exec-am'.
make[6]: Nothing to be done for 'install-data-am'.
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded'
make[5]: Nothing to be done for 'install-exec-am'.
make[5]: Nothing to be done for 'install-data-am'.
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded'
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded'
Making install in gmx_blas
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
make[4]: Nothing to be done for 'install-exec-am'.
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
Making install in gmx_lapack
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack'
make[4]: Nothing to be done for 'install-exec-am'.
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/lib'
 /bin/sh ../../libtool   --mode=install /bin/install -p   libgmx_mpi.la '/usr/src/tmp/gromacs-buildroot/usr/lib'
/bin/install -p .libs/libgmx_mpi.so.5.0.0 /usr/src/tmp/gromacs-buildroot/usr/lib/libgmx_mpi.so.5.0.0
(cd /usr/src/tmp/gromacs-buildroot/usr/lib && { ln -s -f libgmx_mpi.so.5.0.0 libgmx_mpi.so.5 || { rm -f libgmx_mpi.so.5 && ln -s libgmx_mpi.so.5.0.0 libgmx_mpi.so.5; }; })
(cd /usr/src/tmp/gromacs-buildroot/usr/lib && { ln -s -f libgmx_mpi.so.5.0.0 libgmx_mpi.so || { rm -f libgmx_mpi.so && ln -s libgmx_mpi.so.5.0.0 libgmx_mpi.so; }; })
/bin/install -p .libs/libgmx_mpi.lai /usr/src/tmp/gromacs-buildroot/usr/lib/libgmx_mpi.la
libtool: install: warning: remember to run `libtool --finish /usr/lib'
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
Making install in mdlib
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/lib'
 /bin/sh ../../libtool   --mode=install /bin/install -p   libmd_mpi.la '/usr/src/tmp/gromacs-buildroot/usr/lib'
libtool: install: warning: relinking `libmd_mpi.la'
(cd /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib; /bin/sh ../../libtool  --tag=CC --mode=relink mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -version-info 5:0:0 -lgslcblas -o libmd_mpi.la -rpath /usr/lib calcmu.lo calcvir.lo constr.lo coupling.lo domdec.lo domdec_con.lo domdec_network.lo domdec_setup.lo domdec_top.lo ebin.lo edsam.lo ewald.lo fftgrid.lo force.lo ghat.lo init.lo mdatom.lo mdebin.lo minimize.lo mvxvf.lo ns.lo nsgrid.lo perf_est.lo pme.lo pme_pp.lo pppm.lo partdec.lo pull.lo pullutil.lo rf_util.lo shakef.lo sim_util.lo shellfc.lo stat.lo tables.lo tgroup.lo update.lo vcm.lo vsite.lo wall.lo wnblist.lo csettle.lo clincs.lo qmmm.lo gmx_fft.lo gmx_parallel_3dfft.lo gmx_wallcycle.lo qm_gaussian.lo gmx_fft_fftw3.lo ../gmxlib/libgmx_mpi.la -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -inst-prefix-dir /usr/src/tmp/gromacs-buildroot)  
mpicc -shared  .libs/calcmu.o .libs/calcvir.o .libs/constr.o .libs/coupling.o .libs/domdec.o .libs/domdec_con.o .libs/domdec_network.o .libs/domdec_setup.o .libs/domdec_top.o .libs/ebin.o .libs/edsam.o .libs/ewald.o .libs/fftgrid.o .libs/force.o .libs/ghat.o .libs/init.o .libs/mdatom.o .libs/mdebin.o .libs/minimize.o .libs/mvxvf.o .libs/ns.o .libs/nsgrid.o .libs/perf_est.o .libs/pme.o .libs/pme_pp.o .libs/pppm.o .libs/partdec.o .libs/pull.o .libs/pullutil.o .libs/rf_util.o .libs/shakef.o .libs/sim_util.o .libs/shellfc.o .libs/stat.o .libs/tables.o .libs/tgroup.o .libs/update.o .libs/vcm.o .libs/vsite.o .libs/wall.o .libs/wnblist.o .libs/csettle.o .libs/clincs.o .libs/qmmm.o .libs/gmx_fft.o .libs/gmx_parallel_3dfft.o .libs/gmx_wallcycle.o .libs/qm_gaussian.o .libs/gmx_fft_fftw3.o  -lgslcblas -L/usr/src/tmp/gromacs-buildroot/usr/lib -L/usr/lib -lgmx_mpi -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath  -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wl,-soname -Wl,libmd_mpi.so.5 -o .libs/libmd_mpi.so.5.0.0
/bin/install -p .libs/libmd_mpi.so.5.0.0T /usr/src/tmp/gromacs-buildroot/usr/lib/libmd_mpi.so.5.0.0
(cd /usr/src/tmp/gromacs-buildroot/usr/lib && { ln -s -f libmd_mpi.so.5.0.0 libmd_mpi.so.5 || { rm -f libmd_mpi.so.5 && ln -s libmd_mpi.so.5.0.0 libmd_mpi.so.5; }; })
(cd /usr/src/tmp/gromacs-buildroot/usr/lib && { ln -s -f libmd_mpi.so.5.0.0 libmd_mpi.so || { rm -f libmd_mpi.so && ln -s libmd_mpi.so.5.0.0 libmd_mpi.so; }; })
/bin/install -p .libs/libmd_mpi.lai /usr/src/tmp/gromacs-buildroot/usr/lib/libmd_mpi.la
libtool: install: warning: remember to run `libtool --finish /usr/lib'
make  install-exec-hook
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[4]: Nothing to be done for 'install-exec-hook'.
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
Making install in kernel
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/bin'
  /bin/sh ../../libtool   --mode=install /bin/install -p grompp '/usr/src/tmp/gromacs-buildroot/usr/bin/./grompp_mpi'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib'
/bin/install -p .libs/grompp /usr/src/tmp/gromacs-buildroot/usr/bin/./grompp_mpi
  /bin/sh ../../libtool   --mode=install /bin/install -p mdrun '/usr/src/tmp/gromacs-buildroot/usr/bin/./mdrun_mpi'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib'
/bin/install -p .libs/mdrun /usr/src/tmp/gromacs-buildroot/usr/bin/./mdrun_mpi
  /bin/sh ../../libtool   --mode=install /bin/install -p tpbconv '/usr/src/tmp/gromacs-buildroot/usr/bin/./tpbconv_mpi'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib'
/bin/install -p .libs/tpbconv /usr/src/tmp/gromacs-buildroot/usr/bin/./tpbconv_mpi
  /bin/sh ../../libtool   --mode=install /bin/install -p pdb2gmx '/usr/src/tmp/gromacs-buildroot/usr/bin/./pdb2gmx_mpi'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib'
/bin/install -p .libs/pdb2gmx /usr/src/tmp/gromacs-buildroot/usr/bin/./pdb2gmx_mpi
  /bin/sh ../../libtool   --mode=install /bin/install -p protonate '/usr/src/tmp/gromacs-buildroot/usr/bin/./protonate_mpi'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib'
/bin/install -p .libs/protonate /usr/src/tmp/gromacs-buildroot/usr/bin/./protonate_mpi
  /bin/sh ../../libtool   --mode=install /bin/install -p luck '/usr/src/tmp/gromacs-buildroot/usr/bin/./luck_mpi'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib'
/bin/install -p .libs/luck /usr/src/tmp/gromacs-buildroot/usr/bin/./luck_mpi
  /bin/sh ../../libtool   --mode=install /bin/install -p gmxdump '/usr/src/tmp/gromacs-buildroot/usr/bin/./gmxdump_mpi'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib'
/bin/install -p .libs/gmxdump /usr/src/tmp/gromacs-buildroot/usr/bin/./gmxdump_mpi
  /bin/sh ../../libtool   --mode=install /bin/install -p gmxcheck '/usr/src/tmp/gromacs-buildroot/usr/bin/./gmxcheck_mpi'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib'
/bin/install -p .libs/gmxcheck /usr/src/tmp/gromacs-buildroot/usr/bin/./gmxcheck_mpi
  /bin/sh ../../libtool   --mode=install /bin/install -p x2top '/usr/src/tmp/gromacs-buildroot/usr/bin/./x2top_mpi'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib'
/bin/install -p .libs/x2top /usr/src/tmp/gromacs-buildroot/usr/bin/./x2top_mpi
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
Making install in tools
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/lib'
 /bin/sh ../../libtool   --mode=install /bin/install -p   libgmxana_mpi.la '/usr/src/tmp/gromacs-buildroot/usr/lib'
libtool: install: warning: relinking `libgmxana_mpi.la'
(cd /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools; /bin/sh ../../libtool  --tag=CC --mode=relink mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -version-info 5:0:0 -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o libgmxana_mpi.la -rpath /usr/lib autocorr.lo expfit.lo polynomials.lo levenmar.lo anadih.lo pp2shift.lo dlist.lo eigio.lo lsq.lo cmat.lo eigensolver.lo nsc.lo hxprops.lo fitahx.lo gmx_analyze.lo gmx_anaeig.lo gmx_angle.lo gmx_bond.lo gmx_bundle.lo gmx_chi.lo gmx_cluster.lo gmx_confrms.lo gmx_covar.lo gmx_current.lo gmx_density.lo gmx_densmap.lo gmx_dih.lo gmx_dielectric.lo gmx_kinetics.lo gmx_spatial.lo gmx_dipoles.lo gmx_disre.lo gmx_dist.lo gmx_dyndom.lo gmx_enemat.lo gmx_energy.lo gmx_lie.lo gmx_filter.lo gmx_gyrate.lo gmx_h2order.lo gmx_hbond.lo gmx_helix.lo gmx_mindist.lo gmx_msd.lo gmx_morph.lo gmx_nmeig.lo gmx_nmens.lo gmx_order.lo gmx_principal.lo gmx_polystat.lo gmx_potential.lo gmx_rama.lo gmx_rdf.lo gmx_rms.lo gmx_rmsdist.lo gmx_rmsf.lo gmx_rotacf.lo gmx_saltbr.lo gmx_sas.lo gmx_sdf.lo gmx_sgangle.lo gmx_sorient.lo gmx_spol.lo gmx_tcaf.lo gmx_traj.lo gmx_velacc.lo gmx_helixorient.lo gmx_clustsize.lo gmx_mdmat.lo gmx_wham.lo correl.lo gmx_sham.lo gmx_nmtraj.lo gmx_trjconv.lo gmx_trjcat.lo gmx_trjorder.lo gmx_xpm2ps.lo gmx_editconf.lo gmx_genbox.lo gmx_genion.lo gmx_genconf.lo gmx_genpr.lo gmx_eneconv.lo gmx_vanhove.lo gmx_wheel.lo addconf.lo calcpot.lo edittop.lo ../gmxlib/libgmx_mpi.la ../mdlib/libmd_mpi.la -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte -inst-prefix-dir /usr/src/tmp/gromacs-buildroot)  
mpicc -shared  .libs/autocorr.o .libs/expfit.o .libs/polynomials.o .libs/levenmar.o .libs/anadih.o .libs/pp2shift.o .libs/dlist.o .libs/eigio.o .libs/lsq.o .libs/cmat.o .libs/eigensolver.o .libs/nsc.o .libs/hxprops.o .libs/fitahx.o .libs/gmx_analyze.o .libs/gmx_anaeig.o .libs/gmx_angle.o .libs/gmx_bond.o .libs/gmx_bundle.o .libs/gmx_chi.o .libs/gmx_cluster.o .libs/gmx_confrms.o .libs/gmx_covar.o .libs/gmx_current.o .libs/gmx_density.o .libs/gmx_densmap.o .libs/gmx_dih.o .libs/gmx_dielectric.o .libs/gmx_kinetics.o .libs/gmx_spatial.o .libs/gmx_dipoles.o .libs/gmx_disre.o .libs/gmx_dist.o .libs/gmx_dyndom.o .libs/gmx_enemat.o .libs/gmx_energy.o .libs/gmx_lie.o .libs/gmx_filter.o .libs/gmx_gyrate.o .libs/gmx_h2order.o .libs/gmx_hbond.o .libs/gmx_helix.o .libs/gmx_mindist.o .libs/gmx_msd.o .libs/gmx_morph.o .libs/gmx_nmeig.o .libs/gmx_nmens.o .libs/gmx_order.o .libs/gmx_principal.o .libs/gmx_polystat.o .libs/gmx_potential.o .libs/gmx_rama.o .libs/gmx_rdf.o .libs/gmx_rms.o .libs/gmx_rmsdist.o .libs/gmx_rmsf.o .libs/gmx_rotacf.o .libs/gmx_saltbr.o .libs/gmx_sas.o .libs/gmx_sdf.o .libs/gmx_sgangle.o .libs/gmx_sorient.o .libs/gmx_spol.o .libs/gmx_tcaf.o .libs/gmx_traj.o .libs/gmx_velacc.o .libs/gmx_helixorient.o .libs/gmx_clustsize.o .libs/gmx_mdmat.o .libs/gmx_wham.o .libs/correl.o .libs/gmx_sham.o .libs/gmx_nmtraj.o .libs/gmx_trjconv.o .libs/gmx_trjcat.o .libs/gmx_trjorder.o .libs/gmx_xpm2ps.o .libs/gmx_editconf.o .libs/gmx_genbox.o .libs/gmx_genion.o .libs/gmx_genconf.o .libs/gmx_genpr.o .libs/gmx_eneconv.o .libs/gmx_vanhove.o .libs/gmx_wheel.o .libs/addconf.o .libs/calcpot.o .libs/edittop.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/lib/openmpi/lib -L/usr/src/tmp/gromacs-buildroot/usr/lib -L/usr/lib -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -L/usr/src/tmp/gromacs-buildroot/usr/lib/openmpi/lib -lmpi -lopen-pal -lopen-rte  -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wl,-Rpath:/usr/lib/openmpi/lib -Wl,-soname -Wl,libgmxana_mpi.so.5 -o .libs/libgmxana_mpi.so.5.0.0
/bin/install -p .libs/libgmxana_mpi.so.5.0.0T /usr/src/tmp/gromacs-buildroot/usr/lib/libgmxana_mpi.so.5.0.0
(cd /usr/src/tmp/gromacs-buildroot/usr/lib && { ln -s -f libgmxana_mpi.so.5.0.0 libgmxana_mpi.so.5 || { rm -f libgmxana_mpi.so.5 && ln -s libgmxana_mpi.so.5.0.0 libgmxana_mpi.so.5; }; })
(cd /usr/src/tmp/gromacs-buildroot/usr/lib && { ln -s -f libgmxana_mpi.so.5.0.0 libgmxana_mpi.so || { rm -f libgmxana_mpi.so && ln -s libgmxana_mpi.so.5.0.0 libgmxana_mpi.so; }; })
/bin/install -p .libs/libgmxana_mpi.lai /usr/src/tmp/gromacs-buildroot/usr/lib/libgmxana_mpi.la
libtool: install: warning: remember to run `libtool --finish /usr/lib'
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/bin'
  /bin/sh ../../libtool   --mode=install /bin/install -p do_dssp '/usr/src/tmp/gromacs-buildroot/usr/bin/./do_dssp_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib'
/bin/install -p .libs/do_dssp /usr/src/tmp/gromacs-buildroot/usr/bin/./do_dssp_mpi
  /bin/sh ../../libtool   --mode=install /bin/install -p editconf '/usr/src/tmp/gromacs-buildroot/usr/bin/./editconf_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib'
/bin/install -p .libs/editconf /usr/src/tmp/gromacs-buildroot/usr/bin/./editconf_mpi
  /bin/sh ../../libtool   --mode=install /bin/install -p eneconv '/usr/src/tmp/gromacs-buildroot/usr/bin/./eneconv_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib'
/bin/install -p .libs/eneconv /usr/src/tmp/gromacs-buildroot/usr/bin/./eneconv_mpi
  /bin/sh ../../libtool   --mode=install /bin/install -p genbox '/usr/src/tmp/gromacs-buildroot/usr/bin/./genbox_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib'
/bin/install -p .libs/genbox /usr/src/tmp/gromacs-buildroot/usr/bin/./genbox_mpi
  /bin/sh ../../libtool   --mode=install /bin/install -p genconf '/usr/src/tmp/gromacs-buildroot/usr/bin/./genconf_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib'
/bin/install -p .libs/genconf /usr/src/tmp/gromacs-buildroot/usr/bin/./genconf_mpi
  /bin/sh ../../libtool   --mode=install /bin/install -p genrestr '/usr/src/tmp/gromacs-buildroot/usr/bin/./genrestr_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib'
/bin/install -p .libs/genrestr /usr/src/tmp/gromacs-buildroot/usr/bin/./genrestr_mpi
  /bin/sh ../../libtool   --mode=install /bin/install -p g_nmtraj '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_nmtraj_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_nmtraj /usr/src/tmp/gromacs-buildroot/usr/bin/./g_nmtraj_mpi
  /bin/sh ../../libtool   --mode=install /bin/install -p make_ndx '/usr/src/tmp/gromacs-buildroot/usr/bin/./make_ndx_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib'
/bin/install -p .libs/make_ndx /usr/src/tmp/gromacs-buildroot/usr/bin/./make_ndx_mpi
  /bin/sh ../../libtool   --mode=install /bin/install -p mk_angndx '/usr/src/tmp/gromacs-buildroot/usr/bin/./mk_angndx_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib'
/bin/install -p .libs/mk_angndx /usr/src/tmp/gromacs-buildroot/usr/bin/./mk_angndx_mpi
  /bin/sh ../../libtool   --mode=install /bin/install -p trjcat '/usr/src/tmp/gromacs-buildroot/usr/bin/./trjcat_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib'
/bin/install -p .libs/trjcat /usr/src/tmp/gromacs-buildroot/usr/bin/./trjcat_mpi
  /bin/sh ../../libtool   --mode=install /bin/install -p trjconv '/usr/src/tmp/gromacs-buildroot/usr/bin/./trjconv_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib'
/bin/install -p .libs/trjconv /usr/src/tmp/gromacs-buildroot/usr/bin/./trjconv_mpi
  /bin/sh ../../libtool   --mode=install /bin/install -p trjorder '/usr/src/tmp/gromacs-buildroot/usr/bin/./trjorder_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib'
/bin/install -p .libs/trjorder /usr/src/tmp/gromacs-buildroot/usr/bin/./trjorder_mpi
  /bin/sh ../../libtool   --mode=install /bin/install -p wheel '/usr/src/tmp/gromacs-buildroot/usr/bin/./wheel_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib'
/bin/install -p .libs/wheel /usr/src/tmp/gromacs-buildroot/usr/bin/./wheel_mpi
  /bin/sh ../../libtool   --mode=install /bin/install -p xpm2ps '/usr/src/tmp/gromacs-buildroot/usr/bin/./xpm2ps_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib'
/bin/install -p .libs/xpm2ps /usr/src/tmp/gromacs-buildroot/usr/bin/./xpm2ps_mpi
  /bin/sh ../../libtool   --mode=install /bin/install -p genion '/usr/src/tmp/gromacs-buildroot/usr/bin/./genion_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib'
/bin/install -p .libs/genion /usr/src/tmp/gromacs-buildroot/usr/bin/./genion_mpi
  /bin/sh ../../libtool   --mode=install /bin/install -p anadock '/usr/src/tmp/gromacs-buildroot/usr/bin/./anadock_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib'
/bin/install -p .libs/anadock /usr/src/tmp/gromacs-buildroot/usr/bin/./anadock_mpi
  /bin/sh ../../libtool   --mode=install /bin/install -p make_edi '/usr/src/tmp/gromacs-buildroot/usr/bin/./make_edi_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib'
/bin/install -p .libs/make_edi /usr/src/tmp/gromacs-buildroot/usr/bin/./make_edi_mpi
  /bin/sh ../../libtool   --mode=install /bin/install -p g_analyze '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_analyze_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_analyze /usr/src/tmp/gromacs-buildroot/usr/bin/./g_analyze_mpi
  /bin/sh ../../libtool   --mode=install /bin/install -p g_anaeig '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_anaeig_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_anaeig /usr/src/tmp/gromacs-buildroot/usr/bin/./g_anaeig_mpi
  /bin/sh ../../libtool   --mode=install /bin/install -p g_angle '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_angle_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_angle /usr/src/tmp/gromacs-buildroot/usr/bin/./g_angle_mpi
  /bin/sh ../../libtool   --mode=install /bin/install -p g_bond '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_bond_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_bond /usr/src/tmp/gromacs-buildroot/usr/bin/./g_bond_mpi
  /bin/sh ../../libtool   --mode=install /bin/install -p g_bundle '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_bundle_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_bundle /usr/src/tmp/gromacs-buildroot/usr/bin/./g_bundle_mpi
  /bin/sh ../../libtool   --mode=install /bin/install -p g_chi '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_chi_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_chi /usr/src/tmp/gromacs-buildroot/usr/bin/./g_chi_mpi
  /bin/sh ../../libtool   --mode=install /bin/install -p g_cluster '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_cluster_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_cluster /usr/src/tmp/gromacs-buildroot/usr/bin/./g_cluster_mpi
  /bin/sh ../../libtool   --mode=install /bin/install -p g_confrms '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_confrms_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_confrms /usr/src/tmp/gromacs-buildroot/usr/bin/./g_confrms_mpi
  /bin/sh ../../libtool   --mode=install /bin/install -p g_covar '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_covar_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_covar /usr/src/tmp/gromacs-buildroot/usr/bin/./g_covar_mpi
  /bin/sh ../../libtool   --mode=install /bin/install -p g_current '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_current_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_current /usr/src/tmp/gromacs-buildroot/usr/bin/./g_current_mpi
  /bin/sh ../../libtool   --mode=install /bin/install -p g_density '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_density_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_density /usr/src/tmp/gromacs-buildroot/usr/bin/./g_density_mpi
  /bin/sh ../../libtool   --mode=install /bin/install -p g_densmap '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_densmap_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_densmap /usr/src/tmp/gromacs-buildroot/usr/bin/./g_densmap_mpi
  /bin/sh ../../libtool   --mode=install /bin/install -p g_dih '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_dih_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_dih /usr/src/tmp/gromacs-buildroot/usr/bin/./g_dih_mpi
  /bin/sh ../../libtool   --mode=install /bin/install -p g_dielectric '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_dielectric_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_dielectric /usr/src/tmp/gromacs-buildroot/usr/bin/./g_dielectric_mpi
  /bin/sh ../../libtool   --mode=install /bin/install -p g_helixorient '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_helixorient_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_helixorient /usr/src/tmp/gromacs-buildroot/usr/bin/./g_helixorient_mpi
  /bin/sh ../../libtool   --mode=install /bin/install -p g_principal '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_principal_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_principal /usr/src/tmp/gromacs-buildroot/usr/bin/./g_principal_mpi
  /bin/sh ../../libtool   --mode=install /bin/install -p g_dipoles '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_dipoles_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_dipoles /usr/src/tmp/gromacs-buildroot/usr/bin/./g_dipoles_mpi
  /bin/sh ../../libtool   --mode=install /bin/install -p g_disre '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_disre_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_disre /usr/src/tmp/gromacs-buildroot/usr/bin/./g_disre_mpi
  /bin/sh ../../libtool   --mode=install /bin/install -p g_dist '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_dist_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_dist /usr/src/tmp/gromacs-buildroot/usr/bin/./g_dist_mpi
  /bin/sh ../../libtool   --mode=install /bin/install -p g_dyndom '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_dyndom_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_dyndom /usr/src/tmp/gromacs-buildroot/usr/bin/./g_dyndom_mpi
  /bin/sh ../../libtool   --mode=install /bin/install -p g_enemat '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_enemat_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_enemat /usr/src/tmp/gromacs-buildroot/usr/bin/./g_enemat_mpi
  /bin/sh ../../libtool   --mode=install /bin/install -p g_energy '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_energy_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_energy /usr/src/tmp/gromacs-buildroot/usr/bin/./g_energy_mpi
  /bin/sh ../../libtool   --mode=install /bin/install -p g_lie '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_lie_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_lie /usr/src/tmp/gromacs-buildroot/usr/bin/./g_lie_mpi
  /bin/sh ../../libtool   --mode=install /bin/install -p g_filter '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_filter_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_filter /usr/src/tmp/gromacs-buildroot/usr/bin/./g_filter_mpi
  /bin/sh ../../libtool   --mode=install /bin/install -p g_gyrate '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_gyrate_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_gyrate /usr/src/tmp/gromacs-buildroot/usr/bin/./g_gyrate_mpi
  /bin/sh ../../libtool   --mode=install /bin/install -p g_h2order '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_h2order_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_h2order /usr/src/tmp/gromacs-buildroot/usr/bin/./g_h2order_mpi
  /bin/sh ../../libtool   --mode=install /bin/install -p g_hbond '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_hbond_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_hbond /usr/src/tmp/gromacs-buildroot/usr/bin/./g_hbond_mpi
  /bin/sh ../../libtool   --mode=install /bin/install -p g_helix '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_helix_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_helix /usr/src/tmp/gromacs-buildroot/usr/bin/./g_helix_mpi
  /bin/sh ../../libtool   --mode=install /bin/install -p g_mindist '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_mindist_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_mindist /usr/src/tmp/gromacs-buildroot/usr/bin/./g_mindist_mpi
  /bin/sh ../../libtool   --mode=install /bin/install -p g_msd '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_msd_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_msd /usr/src/tmp/gromacs-buildroot/usr/bin/./g_msd_mpi
  /bin/sh ../../libtool   --mode=install /bin/install -p g_morph '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_morph_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_morph /usr/src/tmp/gromacs-buildroot/usr/bin/./g_morph_mpi
  /bin/sh ../../libtool   --mode=install /bin/install -p g_nmeig '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_nmeig_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_nmeig /usr/src/tmp/gromacs-buildroot/usr/bin/./g_nmeig_mpi
  /bin/sh ../../libtool   --mode=install /bin/install -p g_nmens '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_nmens_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_nmens /usr/src/tmp/gromacs-buildroot/usr/bin/./g_nmens_mpi
  /bin/sh ../../libtool   --mode=install /bin/install -p g_order '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_order_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_order /usr/src/tmp/gromacs-buildroot/usr/bin/./g_order_mpi
  /bin/sh ../../libtool   --mode=install /bin/install -p g_polystat '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_polystat_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_polystat /usr/src/tmp/gromacs-buildroot/usr/bin/./g_polystat_mpi
  /bin/sh ../../libtool   --mode=install /bin/install -p g_potential '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_potential_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_potential /usr/src/tmp/gromacs-buildroot/usr/bin/./g_potential_mpi
  /bin/sh ../../libtool   --mode=install /bin/install -p g_rama '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_rama_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_rama /usr/src/tmp/gromacs-buildroot/usr/bin/./g_rama_mpi
  /bin/sh ../../libtool   --mode=install /bin/install -p g_rdf '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_rdf_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_rdf /usr/src/tmp/gromacs-buildroot/usr/bin/./g_rdf_mpi
  /bin/sh ../../libtool   --mode=install /bin/install -p g_rms '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_rms_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_rms /usr/src/tmp/gromacs-buildroot/usr/bin/./g_rms_mpi
  /bin/sh ../../libtool   --mode=install /bin/install -p g_rmsdist '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_rmsdist_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_rmsdist /usr/src/tmp/gromacs-buildroot/usr/bin/./g_rmsdist_mpi
  /bin/sh ../../libtool   --mode=install /bin/install -p g_rmsf '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_rmsf_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_rmsf /usr/src/tmp/gromacs-buildroot/usr/bin/./g_rmsf_mpi
  /bin/sh ../../libtool   --mode=install /bin/install -p g_rotacf '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_rotacf_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_rotacf /usr/src/tmp/gromacs-buildroot/usr/bin/./g_rotacf_mpi
  /bin/sh ../../libtool   --mode=install /bin/install -p g_saltbr '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_saltbr_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_saltbr /usr/src/tmp/gromacs-buildroot/usr/bin/./g_saltbr_mpi
  /bin/sh ../../libtool   --mode=install /bin/install -p g_sas '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_sas_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_sas /usr/src/tmp/gromacs-buildroot/usr/bin/./g_sas_mpi
  /bin/sh ../../libtool   --mode=install /bin/install -p g_sgangle '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_sgangle_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_sgangle /usr/src/tmp/gromacs-buildroot/usr/bin/./g_sgangle_mpi
  /bin/sh ../../libtool   --mode=install /bin/install -p g_sham '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_sham_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_sham /usr/src/tmp/gromacs-buildroot/usr/bin/./g_sham_mpi
  /bin/sh ../../libtool   --mode=install /bin/install -p g_sorient '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_sorient_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_sorient /usr/src/tmp/gromacs-buildroot/usr/bin/./g_sorient_mpi
  /bin/sh ../../libtool   --mode=install /bin/install -p g_spol '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_spol_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_spol /usr/src/tmp/gromacs-buildroot/usr/bin/./g_spol_mpi
  /bin/sh ../../libtool   --mode=install /bin/install -p g_sdf '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_sdf_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_sdf /usr/src/tmp/gromacs-buildroot/usr/bin/./g_sdf_mpi
  /bin/sh ../../libtool   --mode=install /bin/install -p g_spatial '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_spatial_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_spatial /usr/src/tmp/gromacs-buildroot/usr/bin/./g_spatial_mpi
  /bin/sh ../../libtool   --mode=install /bin/install -p g_tcaf '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_tcaf_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_tcaf /usr/src/tmp/gromacs-buildroot/usr/bin/./g_tcaf_mpi
  /bin/sh ../../libtool   --mode=install /bin/install -p g_traj '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_traj_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_traj /usr/src/tmp/gromacs-buildroot/usr/bin/./g_traj_mpi
  /bin/sh ../../libtool   --mode=install /bin/install -p g_vanhove '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_vanhove_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_vanhove /usr/src/tmp/gromacs-buildroot/usr/bin/./g_vanhove_mpi
  /bin/sh ../../libtool   --mode=install /bin/install -p g_velacc '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_velacc_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_velacc /usr/src/tmp/gromacs-buildroot/usr/bin/./g_velacc_mpi
  /bin/sh ../../libtool   --mode=install /bin/install -p g_clustsize '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_clustsize_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_clustsize /usr/src/tmp/gromacs-buildroot/usr/bin/./g_clustsize_mpi
  /bin/sh ../../libtool   --mode=install /bin/install -p g_mdmat '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_mdmat_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_mdmat /usr/src/tmp/gromacs-buildroot/usr/bin/./g_mdmat_mpi
  /bin/sh ../../libtool   --mode=install /bin/install -p g_wham '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_wham_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_wham /usr/src/tmp/gromacs-buildroot/usr/bin/./g_wham_mpi
  /bin/sh ../../libtool   --mode=install /bin/install -p g_kinetics '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_kinetics_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_kinetics /usr/src/tmp/gromacs-buildroot/usr/bin/./g_kinetics_mpi
  /bin/sh ../../libtool   --mode=install /bin/install -p sigeps '/usr/src/tmp/gromacs-buildroot/usr/bin/./sigeps_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib'
/bin/install -p .libs/sigeps /usr/src/tmp/gromacs-buildroot/usr/bin/./sigeps_mpi
make  install-exec-hook
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
libname="libgmxana_mpi"; \
nompi="`echo $libname | sed -e 's,_mpi,,'`"; \
libdir="/usr/lib"; \
if echo $libname | grep mpi >/dev/null ; then \
  (cd $libdir && test -e $libname.a -a ! -e $nompi.a && ln -s $libname.a $nompi.a ; exit 0); \
  (cd $libdir && test -e $libname.so -a ! -e $nompi.so && ln -s $libname.so $nompi.so ; exit 0); \
fi; 
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
Making install in ngmx
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/bin'
  /bin/sh ../../libtool   --mode=install /bin/install -p ngmx '/usr/src/tmp/gromacs-buildroot/usr/bin/./ngmx_mpi'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib'
/bin/install -p .libs/ngmx /usr/src/tmp/gromacs-buildroot/usr/bin/./ngmx_mpi
  /bin/sh ../../libtool   --mode=install /bin/install -p xrama '/usr/src/tmp/gromacs-buildroot/usr/bin/./xrama_mpi'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib'
/bin/install -p .libs/xrama /usr/src/tmp/gromacs-buildroot/usr/bin/./xrama_mpi
  /bin/sh ../../libtool   --mode=install /bin/install -p highway '/usr/src/tmp/gromacs-buildroot/usr/bin/./highway_mpi'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib'
/bin/install -p .libs/highway /usr/src/tmp/gromacs-buildroot/usr/bin/./highway_mpi
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
Making install in contrib
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/contrib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/contrib'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/contrib'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/contrib'
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src'
make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src'
Making install in admin
make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/admin'
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/admin'
make[2]: Nothing to be done for 'install-exec-am'.
make[2]: Nothing to be done for 'install-data-am'.
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/admin'
make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/admin'
Making install in scripts
make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/scripts'
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/scripts'
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/bin'
 /bin/install -p GMXRC GMXRC.csh GMXRC.bash GMXRC.zsh '/usr/src/tmp/gromacs-buildroot/usr/bin'
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/bin'
 /bin/install -p ../../scripts/completion.csh ../../scripts/completion.bash ../../scripts/completion.zsh ../../scripts/demux.pl ../../scripts/xplor2gmx.pl '/usr/src/tmp/gromacs-buildroot/usr/bin'
make[2]: Nothing to be done for 'install-data-am'.
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/scripts'
make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/scripts'
Making install in share
make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share'
Making install in top
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/top'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/top'
make[3]: Nothing to be done for 'install-exec-am'.
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/top'
 /bin/install -p -m 644 ../../../share/top/ffgmx.itp ../../../share/top/ffgmxnb.itp ../../../share/top/ffgmxbon.itp ../../../share/top/ffgmx.atp ../../../share/top/ffgmx.hdb ../../../share/top/ffgmx.rtp ../../../share/top/ffgmx-c.tdb ../../../share/top/ffgmx-n.tdb ../../../share/top/ffgmx2.itp ../../../share/top/ffgmx2nb.itp ../../../share/top/ffgmx2bon.itp ../../../share/top/ffgmx2.atp ../../../share/top/ffgmx2.hdb ../../../share/top/ffgmx2.rtp ../../../share/top/ffgmx2-c.tdb ../../../share/top/ffgmx2-n.tdb ../../../share/top/ffG43a1.itp ../../../share/top/ffG43a1nb.itp ../../../share/top/ffG43a1bon.itp ../../../share/top/ffG43a1.atp ../../../share/top/ffG43a1.hdb ../../../share/top/ffG43a1.rtp ../../../share/top/ffG43a1-c.tdb ../../../share/top/ffG43a1-n.tdb ../../../share/top/ffG43a2.itp ../../../share/top/ffG43a2nb.itp ../../../share/top/ffG43a2bon.itp ../../../share/top/ffG43a2.atp ../../../share/top/ffG43a2.hdb ../../../share/top/ffG43a2.rtp ../../../share/top/ffG43a2-c.tdb ../../../share/top/ffG43a2-n.tdb ../../../share/top/ffgmx.ddb ../../../share/top/ffgmx2.ddb ../../../share/top/ffG43a1.ddb ../../../share/top/ffG43a2.ddb ../../../share/top/ffG45a3-c.tdb ../../../share/top/ffG45a3.atp ../../../share/top/ffG45a3.hdb ../../../share/top/ffG45a3.rtp '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/top'
 /bin/install -p -m 644 ../../../share/top/ffG45a3nb.itp ../../../share/top/ffG45a3-n.tdb ../../../share/top/ffG45a3.ddb ../../../share/top/ffG45a3.itp ../../../share/top/ffG45a3bon.itp ../../../share/top/ffG53a5-c.tdb ../../../share/top/ffG53a5.atp ../../../share/top/ffG53a5.hdb ../../../share/top/ffG53a5.rtp ../../../share/top/ffG53a5nb.itp ../../../share/top/ffG53a5-n.tdb ../../../share/top/ffG53a5.ddb ../../../share/top/ffG53a5.itp ../../../share/top/ffG53a5bon.itp ../../../share/top/ffG53a5.n2t ../../../share/top/ffG53a6-c.tdb ../../../share/top/ffG53a6.atp ../../../share/top/ffG53a6.hdb ../../../share/top/ffG53a6.rtp ../../../share/top/ffG53a6nb.itp ../../../share/top/ffG53a6-n.tdb ../../../share/top/ffG53a6.ddb ../../../share/top/ffG53a6.itp ../../../share/top/ffG53a6bon.itp ../../../share/top/ffoplsaa.atp ../../../share/top/ffoplsaa.itp ../../../share/top/ffoplsaabon.itp ../../../share/top/ffoplsaanb.itp ../../../share/top/ffoplsaa.hdb ../../../share/top/ffoplsaa-n.tdb ../../../share/top/ffoplsaa-c.tdb ../../../share/top/ffoplsaa.rtp ../../../share/top/ffoplsaa.ddb ../../../share/top/ffoplsaa.n2t ../../../share/top/ffencads-c.tdb ../../../share/top/ffencads.itp ../../../share/top/ffencadv-c.tdb ../../../share/top/ffencadv.itp ../../../share/top/ffencads-n.tdb ../../../share/top/ffencads.rtp '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/top'
 /bin/install -p -m 644 ../../../share/top/ffencadv-n.tdb ../../../share/top/ffencadv.rtp ../../../share/top/ffencads.atp ../../../share/top/ffencadsbon.itp ../../../share/top/ffencadv.atp ../../../share/top/ffencadvbon.itp ../../../share/top/ffencads.hdb ../../../share/top/ffencadsnb.itp ../../../share/top/ffencadv.hdb ../../../share/top/ffencadvnb.itp ../../../share/top/1mlg.itp ../../../share/top/2mlg.itp ../../../share/top/benzamide.itp ../../../share/top/bondadd.itp ../../../share/top/buck.itp ../../../share/top/decane.itp ../../../share/top/dlg.itp ../../../share/top/dmso.itp ../../../share/top/fa.itp ../../../share/top/ff_dum.itp ../../../share/top/flexspc.itp ../../../share/top/flexspce.itp ../../../share/top/flexwat-ferguson.itp ../../../share/top/h2p4o13.itp ../../../share/top/h2p8o25.itp ../../../share/top/h2po4.itp ../../../share/top/ions.itp ../../../share/top/methanol.itp ../../../share/top/spc.itp ../../../share/top/spce.itp ../../../share/top/tfe.itp ../../../share/top/tip3p.itp ../../../share/top/tip4p.itp ../../../share/top/urea.itp ../../../share/top/dgsolv.dat ../../../share/top/electroneg.dat ../../../share/top/dec50.gro ../../../share/top/dmso.gro ../../../share/top/spc216.gro ../../../share/top/tip4p.gro '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/top'
 /bin/install -p -m 644 ../../../share/top/urea+h2o.gro ../../../share/top/f3c.itp ../../../share/top/aminoacids.dat ../../../share/top/atommass.dat ../../../share/top/bromacs.dat ../../../share/top/ca-shift.dat ../../../share/top/cb-shift.dat ../../../share/top/co-shift.dat ../../../share/top/edissoc.dat ../../../share/top/FF.dat ../../../share/top/gurgle.dat ../../../share/top/ha-shift.dat ../../../share/top/links.dat ../../../share/top/phbres.dat ../../../share/top/random.dat ../../../share/top/refi_aa.dat ../../../share/top/specbond.dat ../../../share/top/surface.dat ../../../share/top/vdwradii.dat ../../../share/top/xlateat.dat ../../../share/top/highway.dat ../../../share/top/export.dlg ../../../share/top/bonds.dlg ../../../share/top/ss.map ../../../share/top/ps.m2p ../../../share/top/table6-10.xvg ../../../share/top/table6-11.xvg ../../../share/top/table6-12.xvg ../../../share/top/table6-8.xvg ../../../share/top/table6-9.xvg ../../../share/top/atom_nom.tbl ../../../share/top/gromacs.dtd ../../../share/top/tip5p.gro ../../../share/top/tip5p.itp ../../../share/top/sw.itp ../../../share/top/elements.dat '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/top'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/top'
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Making install in tutor
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/tutor'
Making install in nmr1
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/tutor/nmr1'
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 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/nmr1'
 /bin/install -p -m 644 ../../../../share/tutor/nmr1/conf.gro ../../../../share/tutor/nmr1/grompp.mdp ../../../../share/tutor/nmr1/pep.pdb ../../../../share/tutor/nmr1/topol.top '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/nmr1'
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Making install in nmr2
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/tutor/nmr2'
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 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/nmr2'
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make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/tutor/nmr2'
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Making install in speptide
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/tutor/speptide'
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make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/tutor/speptide'
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Making install in water
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/tutor/water'
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Making install in gmxdemo
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/tutor/gmxdemo'
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 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/gmxdemo'
 /bin/install -p -m 644 ../../../../share/tutor/gmxdemo/cpeptide.pdb '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/gmxdemo'
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/gmxdemo'
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Making install in methanol
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/tutor/methanol'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/tutor/methanol'
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 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/methanol'
 /bin/install -p -m 644 ../../../../share/tutor/methanol/index.ndx ../../../../share/tutor/methanol/conf.gro ../../../../share/tutor/methanol/methanol.pdb ../../../../share/tutor/methanol/grompp.mdp ../../../../share/tutor/methanol/topol.top ../../../../share/tutor/methanol/methanol.itp '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/methanol'
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/tutor/methanol'
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Making install in mixed
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/tutor/mixed'
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 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/mixed'
 /bin/install -p -m 644 ../../../../share/tutor/mixed/index.ndx ../../../../share/tutor/mixed/conf.gro ../../../../share/tutor/mixed/mixed.pdb ../../../../share/tutor/mixed/grompp.mdp ../../../../share/tutor/mixed/topol.top '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/mixed'
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Making install in template
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 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/template'
 /bin/install -p -m 644 ../../../share/template/template.c ../../../share/template/README Makefile.i586-alt-linux-gnu '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/template'
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Making install in html
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Making install in .
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/html'
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 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/html'
 /bin/install -p -m 644 ../../../share/html/online.html ../../../share/html/gmxfaq.html '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/html'
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Making install in images
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/html/images'
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 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/html/images'
 /bin/install -p -m 644 ../../../../share/html/images/features.gif ../../../../share/html/images/flow_leftrightup.gif ../../../../share/html/images/flow_vrule.gif ../../../../share/html/images/flow_down.gif ../../../../share/html/images/flow_leftup.gif ../../../../share/html/images/links.gif ../../../../share/html/images/articles.gif ../../../../share/html/images/flow_downleft.gif ../../../../share/html/images/flow_right+left.gif ../../../../share/html/images/mail.gif ../../../../share/html/images/bench.gif ../../../../share/html/images/flow_hline.gif ../../../../share/html/images/flow_right.gif ../../../../share/html/images/manual.gif ../../../../share/html/images/charts_down.gif ../../../../share/html/images/flow_left.gif ../../../../share/html/images/flow_rightleftdown.gif ../../../../share/html/images/gmxlogo_small.jpg ../../../../share/html/images/charts_up.gif ../../../../share/html/images/flow_leftright.gif ../../../../share/html/images/flow_uprightleft.gif ../../../../share/html/images/software.gif ../../../../share/html/images/faq.gif ../../../../share/html/images/flow_leftrightdown.gif ../../../../share/html/images/flow_vline.gif ../../../../share/html/images/topologies.gif ../../../../share/html/images/plotje.gif ../../../../share/html/images/xvgr.gif ../../../../share/html/images/1ctf-0.jpg ../../../../share/html/images/1ctf-0.2.jpg ../../../../share/html/images/1ctf-0.5.jpg ../../../../share/html/images/1ctf-1.jpg ../../../../share/html/images/1ctf-4.jpg ../../../../share/html/images/1ctf-10.jpg '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/html/images'
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/html/images'
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Making install in online
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/html/online'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/html/online'
make[4]: Nothing to be done for 'install-exec-am'.
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/html/online'
 /bin/install -p -m 644 ../../../../share/html/online/cpt.html ../../../../share/html/online/dat.html ../../../../share/html/online/g_disre.html ../../../../share/html/online/g_sorient.html ../../../../share/html/online/ndx.html ../../../../share/html/online/dlg.html ../../../../share/html/online/g_dist.html ../../../../share/html/online/g_tcaf.html ../../../../share/html/online/ngmx.html ../../../../share/html/online/do_dssp.html ../../../../share/html/online/g_dyndom.html ../../../../share/html/online/g_traj.html ../../../../share/html/online/edi.html ../../../../share/html/online/g_enemat.html ../../../../share/html/online/g_velacc.html ../../../../share/html/online/options.html ../../../../share/html/online/editconf.html ../../../../share/html/online/g_energy.html ../../../../share/html/online/genbox.html ../../../../share/html/online/out.html ../../../../share/html/online/edo.html ../../../../share/html/online/g_gyrate.html ../../../../share/html/online/genconf.html ../../../../share/html/online/pdb.html ../../../../share/html/online/edr.html ../../../../share/html/online/g_h2order.html ../../../../share/html/online/genion.html ../../../../share/html/online/pdb2gmx.html ../../../../share/html/online/ene.html ../../../../share/html/online/g_hbond.html ../../../../share/html/online/genpr.html ../../../../share/html/online/protonate.html ../../../../share/html/online/eneconv.html ../../../../share/html/online/g_helix.html ../../../../share/html/online/getting_started.html ../../../../share/html/online/rtp.html ../../../../share/html/online/eps.html ../../../../share/html/online/g_lie.html ../../../../share/html/online/gmxcheck.html ../../../../share/html/online/tex.html '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/html/online'
 /bin/install -p -m 644 ../../../../share/html/online/files.html ../../../../share/html/online/g_mdmat.html ../../../../share/html/online/gmxdump.html ../../../../share/html/online/top.html ../../../../share/html/online/flow.html ../../../../share/html/online/g_mindist.html ../../../../share/html/online/gro.html ../../../../share/html/online/tpa.html ../../../../share/html/online/g87.html ../../../../share/html/online/g_morph.html ../../../../share/html/online/grompp.html ../../../../share/html/online/tpb.html ../../../../share/html/online/g96.html ../../../../share/html/online/g_msd.html ../../../../share/html/online/hat.html ../../../../share/html/online/tpbconv.html ../../../../share/html/online/g_anaeig.html ../../../../share/html/online/g_nmeig.html ../../../../share/html/online/highway.html ../../../../share/html/online/tpr.html ../../../../share/html/online/g_analyze.html ../../../../share/html/online/g_nmens.html ../../../../share/html/online/include_bot.html ../../../../share/html/online/trj.html ../../../../share/html/online/g_angle.html ../../../../share/html/online/g_order.html ../../../../share/html/online/include_top.html ../../../../share/html/online/trjcat.html ../../../../share/html/online/g_bond.html ../../../../share/html/online/g_potential.html ../../../../share/html/online/itp.html ../../../../share/html/online/trjconv.html ../../../../share/html/online/g_bundle.html ../../../../share/html/online/g_rama.html ../../../../share/html/online/log.html ../../../../share/html/online/trjorder.html ../../../../share/html/online/g_chi.html ../../../../share/html/online/g_rdf.html ../../../../share/html/online/m2p.html ../../../../share/html/online/trr.html '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/html/online'
 /bin/install -p -m 644 ../../../../share/html/online/g_cluster.html ../../../../share/html/online/g_rms.html ../../../../share/html/online/make_ndx.html ../../../../share/html/online/wheel.html ../../../../share/html/online/g_confrms.html ../../../../share/html/online/g_rmsdist.html ../../../../share/html/online/map.html ../../../../share/html/online/x2top.html ../../../../share/html/online/g_covar.html ../../../../share/html/online/g_rmsf.html ../../../../share/html/online/mdp.html ../../../../share/html/online/xpm.html ../../../../share/html/online/g_density.html ../../../../share/html/online/g_rotacf.html ../../../../share/html/online/mdp_opt.html ../../../../share/html/online/xpm2ps.html ../../../../share/html/online/g_dielectric.html ../../../../share/html/online/g_saltbr.html ../../../../share/html/online/mdrun.html ../../../../share/html/online/xrama.html ../../../../share/html/online/g_dih.html ../../../../share/html/online/g_sas.html ../../../../share/html/online/mk_angndx.html ../../../../share/html/online/xtc.html ../../../../share/html/online/g_dipoles.html ../../../../share/html/online/g_sgangle.html ../../../../share/html/online/mtx.html ../../../../share/html/online/xvg.html ../../../../share/html/online/g_densmap.html ../../../../share/html/online/g_sham.html ../../../../share/html/online/make_edi.html ../../../../share/html/online/style.css ../../../../share/html/online/water.html ../../../../share/html/online/gmxdemo.html ../../../../share/html/online/speptide.html ../../../../share/html/online/yourown.html ../../../../share/html/online/methanol.html ../../../../share/html/online/mixed.html ../../../../share/html/online/protunf.html '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/html/online'
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/html/online'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/html/online'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/html'
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share'
make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share'
Making install in man
make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/man'
Making install in man1
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/man/man1'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/man/man1'
make[3]: Nothing to be done for 'install-exec-am'.
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1'
 /bin/install -p -m 644 '../../../man/man1/anadock.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/anadock_mpi.1'
 /bin/install -p -m 644 '../../../man/man1/do_dssp.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/do_dssp_mpi.1'
 /bin/install -p -m 644 '../../../man/man1/editconf.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/editconf_mpi.1'
 /bin/install -p -m 644 '../../../man/man1/eneconv.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/eneconv_mpi.1'
 /bin/install -p -m 644 '../../../man/man1/g_anaeig.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_anaeig_mpi.1'
 /bin/install -p -m 644 '../../../man/man1/g_analyze.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_analyze_mpi.1'
 /bin/install -p -m 644 '../../../man/man1/g_angle.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_angle_mpi.1'
 /bin/install -p -m 644 '../../../man/man1/g_bond.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_bond_mpi.1'
 /bin/install -p -m 644 '../../../man/man1/g_bundle.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_bundle_mpi.1'
 /bin/install -p -m 644 '../../../man/man1/g_chi.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_chi_mpi.1'
 /bin/install -p -m 644 '../../../man/man1/g_cluster.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_cluster_mpi.1'
 /bin/install -p -m 644 '../../../man/man1/g_clustsize.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_clustsize_mpi.1'
 /bin/install -p -m 644 '../../../man/man1/g_confrms.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_confrms_mpi.1'
 /bin/install -p -m 644 '../../../man/man1/g_covar.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_covar_mpi.1'
 /bin/install -p -m 644 '../../../man/man1/g_current.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_current_mpi.1'
 /bin/install -p -m 644 '../../../man/man1/g_density.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_density_mpi.1'
 /bin/install -p -m 644 '../../../man/man1/g_densmap.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_densmap_mpi.1'
 /bin/install -p -m 644 '../../../man/man1/g_dielectric.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_dielectric_mpi.1'
 /bin/install -p -m 644 '../../../man/man1/g_dih.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_dih_mpi.1'
 /bin/install -p -m 644 '../../../man/man1/g_dipoles.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_dipoles_mpi.1'
 /bin/install -p -m 644 '../../../man/man1/g_disre.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_disre_mpi.1'
 /bin/install -p -m 644 '../../../man/man1/g_dist.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_dist_mpi.1'
 /bin/install -p -m 644 '../../../man/man1/g_dyndom.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_dyndom_mpi.1'
 /bin/install -p -m 644 '../../../man/man1/g_enemat.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_enemat_mpi.1'
 /bin/install -p -m 644 '../../../man/man1/g_energy.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_energy_mpi.1'
 /bin/install -p -m 644 '../../../man/man1/g_filter.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_filter_mpi.1'
 /bin/install -p -m 644 '../../../man/man1/g_gyrate.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_gyrate_mpi.1'
 /bin/install -p -m 644 '../../../man/man1/g_h2order.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_h2order_mpi.1'
 /bin/install -p -m 644 '../../../man/man1/g_hbond.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_hbond_mpi.1'
 /bin/install -p -m 644 '../../../man/man1/g_helix.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_helix_mpi.1'
 /bin/install -p -m 644 '../../../man/man1/g_helixorient.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_helixorient_mpi.1'
 /bin/install -p -m 644 '../../../man/man1/g_kinetics.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_kinetics_mpi.1'
 /bin/install -p -m 644 '../../../man/man1/g_lie.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_lie_mpi.1'
 /bin/install -p -m 644 '../../../man/man1/g_mdmat.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_mdmat_mpi.1'
 /bin/install -p -m 644 '../../../man/man1/g_mindist.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_mindist_mpi.1'
 /bin/install -p -m 644 '../../../man/man1/g_morph.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_morph_mpi.1'
 /bin/install -p -m 644 '../../../man/man1/g_msd.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_msd_mpi.1'
 /bin/install -p -m 644 '../../../man/man1/g_nmeig.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_nmeig_mpi.1'
 /bin/install -p -m 644 '../../../man/man1/g_nmens.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_nmens_mpi.1'
 /bin/install -p -m 644 '../../../man/man1/g_nmtraj.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_nmtraj_mpi.1'
 /bin/install -p -m 644 '../../../man/man1/g_order.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_order_mpi.1'
 /bin/install -p -m 644 '../../../man/man1/g_polystat.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_polystat_mpi.1'
 /bin/install -p -m 644 '../../../man/man1/g_potential.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_potential_mpi.1'
 /bin/install -p -m 644 '../../../man/man1/g_principal.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_principal_mpi.1'
 /bin/install -p -m 644 '../../../man/man1/g_rama.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_rama_mpi.1'
 /bin/install -p -m 644 '../../../man/man1/g_rdf.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_rdf_mpi.1'
 /bin/install -p -m 644 '../../../man/man1/g_rms.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_rms_mpi.1'
 /bin/install -p -m 644 '../../../man/man1/g_rmsdist.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_rmsdist_mpi.1'
 /bin/install -p -m 644 '../../../man/man1/g_rmsf.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_rmsf_mpi.1'
 /bin/install -p -m 644 '../../../man/man1/g_rotacf.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_rotacf_mpi.1'
 /bin/install -p -m 644 '../../../man/man1/g_saltbr.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_saltbr_mpi.1'
 /bin/install -p -m 644 '../../../man/man1/g_sas.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_sas_mpi.1'
 /bin/install -p -m 644 '../../../man/man1/g_sdf.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_sdf_mpi.1'
 /bin/install -p -m 644 '../../../man/man1/g_sgangle.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_sgangle_mpi.1'
 /bin/install -p -m 644 '../../../man/man1/g_sham.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_sham_mpi.1'
 /bin/install -p -m 644 '../../../man/man1/g_sorient.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_sorient_mpi.1'
 /bin/install -p -m 644 '../../../man/man1/g_spatial.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_spatial_mpi.1'
 /bin/install -p -m 644 '../../../man/man1/g_spol.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_spol_mpi.1'
 /bin/install -p -m 644 '../../../man/man1/g_tcaf.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_tcaf_mpi.1'
 /bin/install -p -m 644 '../../../man/man1/g_traj.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_traj_mpi.1'
 /bin/install -p -m 644 '../../../man/man1/g_vanhove.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_vanhove_mpi.1'
 /bin/install -p -m 644 '../../../man/man1/g_velacc.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_velacc_mpi.1'
 /bin/install -p -m 644 '../../../man/man1/g_wham.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_wham_mpi.1'
 /bin/install -p -m 644 '../../../man/man1/gen_table.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/gen_table_mpi.1'
 /bin/install -p -m 644 '../../../man/man1/genbox.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/genbox_mpi.1'
 /bin/install -p -m 644 '../../../man/man1/genconf.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/genconf_mpi.1'
 /bin/install -p -m 644 '../../../man/man1/genion.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/genion_mpi.1'
 /bin/install -p -m 644 '../../../man/man1/genrestr.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/genrestr_mpi.1'
 /bin/install -p -m 644 '../../../man/man1/gmxcheck.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/gmxcheck_mpi.1'
 /bin/install -p -m 644 '../../../man/man1/gmxdump.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/gmxdump_mpi.1'
 /bin/install -p -m 644 '../../../man/man1/grompp.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/grompp_mpi.1'
 /bin/install -p -m 644 '../../../man/man1/highway.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/highway_mpi.1'
 /bin/install -p -m 644 '../../../man/man1/make_edi.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/make_edi_mpi.1'
 /bin/install -p -m 644 '../../../man/man1/make_ndx.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/make_ndx_mpi.1'
 /bin/install -p -m 644 '../../../man/man1/mdrun.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/mdrun_mpi.1'
 /bin/install -p -m 644 '../../../man/man1/mk_angndx.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/mk_angndx_mpi.1'
 /bin/install -p -m 644 '../../../man/man1/ngmx.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/ngmx_mpi.1'
 /bin/install -p -m 644 '../../../man/man1/pdb2gmx.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/pdb2gmx_mpi.1'
 /bin/install -p -m 644 '../../../man/man1/protonate.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/protonate_mpi.1'
 /bin/install -p -m 644 '../../../man/man1/sigeps.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/sigeps_mpi.1'
 /bin/install -p -m 644 '../../../man/man1/tpbconv.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/tpbconv_mpi.1'
 /bin/install -p -m 644 '../../../man/man1/trjcat.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/trjcat_mpi.1'
 /bin/install -p -m 644 '../../../man/man1/trjconv.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/trjconv_mpi.1'
 /bin/install -p -m 644 '../../../man/man1/trjorder.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/trjorder_mpi.1'
 /bin/install -p -m 644 '../../../man/man1/wheel.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/wheel_mpi.1'
 /bin/install -p -m 644 '../../../man/man1/x2top.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/x2top_mpi.1'
 /bin/install -p -m 644 '../../../man/man1/xpm2ps.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/xpm2ps_mpi.1'
 /bin/install -p -m 644 '../../../man/man1/xrama.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/xrama_mpi.1'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/man/man1'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/man/man1'
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/man'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/man'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/man'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/man'
make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/man'
make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single'
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single'
make  install-exec-hook
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single'

GROMACS is installed under /usr.
Make sure to update your PATH and MANPATH to find the
programs and unix manual pages, and possibly LD_LIBRARY_PATH
or /etc/ld.so.conf if you are using dynamic libraries.

Please run "make tests" now to verify your installation.

If you want links to the executables in /usr/local/bin,
you can issue "make links" now.
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single'
make[2]: Nothing to be done for 'install-data-am'.
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single'
make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single'
make: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single'
+ popd
~/RPM/BUILD/gromacs-4.0.7
+ pushd mpi-double
~/RPM/BUILD/gromacs-4.0.7/mpi-double ~/RPM/BUILD/gromacs-4.0.7
+ make 'INSTALL=/bin/install -p' install DESTDIR=/usr/src/tmp/gromacs-buildroot
make: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double'
Making install in include
make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/include'
Making install in .
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/include'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/include'
make[3]: Nothing to be done for 'install-exec-am'.
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/include/gromacs'
 /bin/install -p -m 644 ../../include/3dview.h ../../include/assert.h ../../include/atomprop.h ../../include/bondf.h ../../include/calcgrid.h ../../include/calch.h ../../include/calcmu.h ../../include/checkpoint.h ../../include/confio.h ../../include/constr.h ../../include/copyrite.h ../../include/coulomb.h ../../include/dihre.h ../../include/disre.h ../../include/domdec.h ../../include/domdec_network.h ../../include/do_fit.h ../../include/ebin.h ../../include/edsam.h ../../include/enxio.h ../../include/gmx_fatal.h ../../include/ffscanf.h ../../include/fftgrid.h ../../include/filenm.h ../../include/force.h ../../include/futil.h ../../include/gbutil.h ../../include/gmx_ana.h ../../include/gmx_arpack.h ../../include/gmx_blas.h ../../include/gmxcomplex.h ../../include/gmx_cyclecounter.h ../../include/gmxfio.h ../../include/gmx_fft.h ../../include/gmx_lapack.h ../../include/gmx_random.h ../../include/gmx_parallel_3dfft.h ../../include/gmx_system_xdr.h ../../include/gmx_thread.h ../../include/gmx_wallcycle.h '/usr/src/tmp/gromacs-buildroot/usr/include/gromacs'
 /bin/install -p -m 644 ../../include/gpp_atomtype.h ../../include/gpp_nextnb.h ../../include/grompp.h ../../include/gstat.h ../../include/index.h ../../include/invblock.h ../../include/macros.h ../../include/magic.h ../../include/main.h ../../include/maths.h ../../include/matio.h ../../include/mdatoms.h ../../include/mdebin.h ../../include/mdrun.h ../../include/mpelogging.h ../../include/mshift.h ../../include/mtop_util.h ../../include/mtxio.h ../../include/mvdata.h ../../include/names.h ../../include/network.h ../../include/nonbonded.h ../../include/nrama.h ../../include/nrjac.h ../../include/nrnb.h ../../include/nsgrid.h ../../include/ns.h ../../include/orires.h ../../include/partdec.h ../../include/pbc.h ../../include/pdbio.h ../../include/pdebug.h ../../include/perf_est.h ../../include/physics.h ../../include/pme.h ../../include/pppm.h ../../include/princ.h ../../include/pull.h ../../include/qmmm.h ../../include/random.h '/usr/src/tmp/gromacs-buildroot/usr/include/gromacs'
 /bin/install -p -m 644 ../../include/rbin.h ../../include/rdgroup.h ../../include/readcomp.h ../../include/readinp.h ../../include/reorder.h ../../include/rmpbc.h ../../include/shellfc.h ../../include/shift.h ../../include/smalloc.h ../../include/sortwater.h ../../include/sparsematrix.h ../../include/split.h ../../include/splitter.h ../../include/statusio.h ../../include/statutil.h ../../include/strdb.h ../../include/string2.h ../../include/struc2.h ../../include/symtab.h ../../include/sysstuff.h ../../include/tags.h ../../include/tgroup.h ../../include/topsort.h ../../include/tpxio.h ../../include/transfer.h ../../include/trnio.h ../../include/txtdump.h ../../include/typedefs.h ../../include/update.h ../../include/utils.h ../../include/vcm.h ../../include/vec.h ../../include/viewit.h ../../include/vsite.h ../../include/wgms.h ../../include/wman.h ../../include/writeps.h ../../include/xdrf.h ../../include/xtcio.h ../../include/xvgr.h '/usr/src/tmp/gromacs-buildroot/usr/include/gromacs'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/include'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/include'
Making install in types
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/include/types'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/include/types'
make[3]: Nothing to be done for 'install-exec-am'.
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/include/gromacs/types'
 /bin/install -p -m 644 ../../../include/types/atoms.h ../../../include/types/forcerec.h ../../../include/types/ifunc.h ../../../include/types/mdatom.h ../../../include/types/simple.h ../../../include/types/block.h ../../../include/types/constr.h ../../../include/types/energy.h ../../../include/types/graph.h ../../../include/types/inputrec.h ../../../include/types/nblist.h ../../../include/types/ns.h ../../../include/types/nsgrid.h ../../../include/types/symtab.h ../../../include/types/commrec.h ../../../include/types/enums.h ../../../include/types/group.h ../../../include/types/ishift.h ../../../include/types/nbslist.h ../../../include/types/topology.h ../../../include/types/fcdata.h ../../../include/types/filenm.h ../../../include/types/idef.h ../../../include/types/matrix.h ../../../include/types/nrnb.h ../../../include/types/trx.h ../../../include/types/state.h ../../../include/types/pbc.h ../../../include/types/qmmmrec.h ../../../include/types/shellfc.h '/usr/src/tmp/gromacs-buildroot/usr/include/gromacs/types'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/include/types'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/include/types'
make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/include'
Making install in src
make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src'
Making install in gmxlib
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
Making install in nonbonded
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded'
Making install in nb_kernel_ia32_sse2
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_ia32_sse2'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_ia32_sse2'
make[5]: Nothing to be done for 'install-exec-am'.
make[5]: Nothing to be done for 'install-data-am'.
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_ia32_sse2'
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_ia32_sse2'
Making install in nb_kernel
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make  install-am
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Nothing to be done for 'install-exec-am'.
make[6]: Nothing to be done for 'install-data-am'.
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded'
make[5]: Nothing to be done for 'install-exec-am'.
make[5]: Nothing to be done for 'install-data-am'.
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded'
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded'
Making install in gmx_blas
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas'
make[4]: Nothing to be done for 'install-exec-am'.
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas'
Making install in gmx_lapack
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack'
make[4]: Nothing to be done for 'install-exec-am'.
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/lib'
 /bin/sh ../../libtool   --mode=install /bin/install -p   libgmx_mpi_d.la '/usr/src/tmp/gromacs-buildroot/usr/lib'
/bin/install -p .libs/libgmx_mpi_d.so.5.0.0 /usr/src/tmp/gromacs-buildroot/usr/lib/libgmx_mpi_d.so.5.0.0
(cd /usr/src/tmp/gromacs-buildroot/usr/lib && { ln -s -f libgmx_mpi_d.so.5.0.0 libgmx_mpi_d.so.5 || { rm -f libgmx_mpi_d.so.5 && ln -s libgmx_mpi_d.so.5.0.0 libgmx_mpi_d.so.5; }; })
(cd /usr/src/tmp/gromacs-buildroot/usr/lib && { ln -s -f libgmx_mpi_d.so.5.0.0 libgmx_mpi_d.so || { rm -f libgmx_mpi_d.so && ln -s libgmx_mpi_d.so.5.0.0 libgmx_mpi_d.so; }; })
/bin/install -p .libs/libgmx_mpi_d.lai /usr/src/tmp/gromacs-buildroot/usr/lib/libgmx_mpi_d.la
libtool: install: warning: remember to run `libtool --finish /usr/lib'
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
Making install in mdlib
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/lib'
 /bin/sh ../../libtool   --mode=install /bin/install -p   libmd_mpi_d.la '/usr/src/tmp/gromacs-buildroot/usr/lib'
libtool: install: warning: relinking `libmd_mpi_d.la'
(cd /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib; /bin/sh ../../libtool  --tag=CC --mode=relink mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -version-info 5:0:0 -lgslcblas -o libmd_mpi_d.la -rpath /usr/lib calcmu.lo calcvir.lo constr.lo coupling.lo domdec.lo domdec_con.lo domdec_network.lo domdec_setup.lo domdec_top.lo ebin.lo edsam.lo ewald.lo fftgrid.lo force.lo ghat.lo init.lo mdatom.lo mdebin.lo minimize.lo mvxvf.lo ns.lo nsgrid.lo perf_est.lo pme.lo pme_pp.lo pppm.lo partdec.lo pull.lo pullutil.lo rf_util.lo shakef.lo sim_util.lo shellfc.lo stat.lo tables.lo tgroup.lo update.lo vcm.lo vsite.lo wall.lo wnblist.lo csettle.lo clincs.lo qmmm.lo gmx_fft.lo gmx_parallel_3dfft.lo gmx_wallcycle.lo qm_gaussian.lo gmx_fft_fftw3.lo ../gmxlib/libgmx_mpi_d.la -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -inst-prefix-dir /usr/src/tmp/gromacs-buildroot)  
mpicc -shared  .libs/calcmu.o .libs/calcvir.o .libs/constr.o .libs/coupling.o .libs/domdec.o .libs/domdec_con.o .libs/domdec_network.o .libs/domdec_setup.o .libs/domdec_top.o .libs/ebin.o .libs/edsam.o .libs/ewald.o .libs/fftgrid.o .libs/force.o .libs/ghat.o .libs/init.o .libs/mdatom.o .libs/mdebin.o .libs/minimize.o .libs/mvxvf.o .libs/ns.o .libs/nsgrid.o .libs/perf_est.o .libs/pme.o .libs/pme_pp.o .libs/pppm.o .libs/partdec.o .libs/pull.o .libs/pullutil.o .libs/rf_util.o .libs/shakef.o .libs/sim_util.o .libs/shellfc.o .libs/stat.o .libs/tables.o .libs/tgroup.o .libs/update.o .libs/vcm.o .libs/vsite.o .libs/wall.o .libs/wnblist.o .libs/csettle.o .libs/clincs.o .libs/qmmm.o .libs/gmx_fft.o .libs/gmx_parallel_3dfft.o .libs/gmx_wallcycle.o .libs/qm_gaussian.o .libs/gmx_fft_fftw3.o  -lgslcblas -L/usr/src/tmp/gromacs-buildroot/usr/lib -L/usr/lib -lgmx_mpi_d -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath  -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wl,-soname -Wl,libmd_mpi_d.so.5 -o .libs/libmd_mpi_d.so.5.0.0
/bin/install -p .libs/libmd_mpi_d.so.5.0.0T /usr/src/tmp/gromacs-buildroot/usr/lib/libmd_mpi_d.so.5.0.0
(cd /usr/src/tmp/gromacs-buildroot/usr/lib && { ln -s -f libmd_mpi_d.so.5.0.0 libmd_mpi_d.so.5 || { rm -f libmd_mpi_d.so.5 && ln -s libmd_mpi_d.so.5.0.0 libmd_mpi_d.so.5; }; })
(cd /usr/src/tmp/gromacs-buildroot/usr/lib && { ln -s -f libmd_mpi_d.so.5.0.0 libmd_mpi_d.so || { rm -f libmd_mpi_d.so && ln -s libmd_mpi_d.so.5.0.0 libmd_mpi_d.so; }; })
/bin/install -p .libs/libmd_mpi_d.lai /usr/src/tmp/gromacs-buildroot/usr/lib/libmd_mpi_d.la
libtool: install: warning: remember to run `libtool --finish /usr/lib'
make  install-exec-hook
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[4]: Nothing to be done for 'install-exec-hook'.
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
Making install in kernel
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/bin'
  /bin/sh ../../libtool   --mode=install /bin/install -p grompp '/usr/src/tmp/gromacs-buildroot/usr/bin/./grompp_mpi_d'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/grompp /usr/src/tmp/gromacs-buildroot/usr/bin/./grompp_mpi_d
  /bin/sh ../../libtool   --mode=install /bin/install -p mdrun '/usr/src/tmp/gromacs-buildroot/usr/bin/./mdrun_mpi_d'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/mdrun /usr/src/tmp/gromacs-buildroot/usr/bin/./mdrun_mpi_d
  /bin/sh ../../libtool   --mode=install /bin/install -p tpbconv '/usr/src/tmp/gromacs-buildroot/usr/bin/./tpbconv_mpi_d'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/tpbconv /usr/src/tmp/gromacs-buildroot/usr/bin/./tpbconv_mpi_d
  /bin/sh ../../libtool   --mode=install /bin/install -p pdb2gmx '/usr/src/tmp/gromacs-buildroot/usr/bin/./pdb2gmx_mpi_d'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/pdb2gmx /usr/src/tmp/gromacs-buildroot/usr/bin/./pdb2gmx_mpi_d
  /bin/sh ../../libtool   --mode=install /bin/install -p protonate '/usr/src/tmp/gromacs-buildroot/usr/bin/./protonate_mpi_d'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/protonate /usr/src/tmp/gromacs-buildroot/usr/bin/./protonate_mpi_d
  /bin/sh ../../libtool   --mode=install /bin/install -p luck '/usr/src/tmp/gromacs-buildroot/usr/bin/./luck_mpi_d'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/luck /usr/src/tmp/gromacs-buildroot/usr/bin/./luck_mpi_d
  /bin/sh ../../libtool   --mode=install /bin/install -p gmxdump '/usr/src/tmp/gromacs-buildroot/usr/bin/./gmxdump_mpi_d'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/gmxdump /usr/src/tmp/gromacs-buildroot/usr/bin/./gmxdump_mpi_d
  /bin/sh ../../libtool   --mode=install /bin/install -p gmxcheck '/usr/src/tmp/gromacs-buildroot/usr/bin/./gmxcheck_mpi_d'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/gmxcheck /usr/src/tmp/gromacs-buildroot/usr/bin/./gmxcheck_mpi_d
  /bin/sh ../../libtool   --mode=install /bin/install -p x2top '/usr/src/tmp/gromacs-buildroot/usr/bin/./x2top_mpi_d'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/x2top /usr/src/tmp/gromacs-buildroot/usr/bin/./x2top_mpi_d
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
Making install in tools
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/lib'
 /bin/sh ../../libtool   --mode=install /bin/install -p   libgmxana_mpi_d.la '/usr/src/tmp/gromacs-buildroot/usr/lib'
libtool: install: warning: relinking `libgmxana_mpi_d.la'
(cd /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools; /bin/sh ../../libtool  --tag=CC --mode=relink mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wa,--noexecstack -version-info 5:0:0 -Wl,-Rpath:/usr/lib/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib/openmpi/lib -o libgmxana_mpi_d.la -rpath /usr/lib autocorr.lo expfit.lo polynomials.lo levenmar.lo anadih.lo pp2shift.lo dlist.lo eigio.lo lsq.lo cmat.lo eigensolver.lo nsc.lo hxprops.lo fitahx.lo gmx_analyze.lo gmx_anaeig.lo gmx_angle.lo gmx_bond.lo gmx_bundle.lo gmx_chi.lo gmx_cluster.lo gmx_confrms.lo gmx_covar.lo gmx_current.lo gmx_density.lo gmx_densmap.lo gmx_dih.lo gmx_dielectric.lo gmx_kinetics.lo gmx_spatial.lo gmx_dipoles.lo gmx_disre.lo gmx_dist.lo gmx_dyndom.lo gmx_enemat.lo gmx_energy.lo gmx_lie.lo gmx_filter.lo gmx_gyrate.lo gmx_h2order.lo gmx_hbond.lo gmx_helix.lo gmx_mindist.lo gmx_msd.lo gmx_morph.lo gmx_nmeig.lo gmx_nmens.lo gmx_order.lo gmx_principal.lo gmx_polystat.lo gmx_potential.lo gmx_rama.lo gmx_rdf.lo gmx_rms.lo gmx_rmsdist.lo gmx_rmsf.lo gmx_rotacf.lo gmx_saltbr.lo gmx_sas.lo gmx_sdf.lo gmx_sgangle.lo gmx_sorient.lo gmx_spol.lo gmx_tcaf.lo gmx_traj.lo gmx_velacc.lo gmx_helixorient.lo gmx_clustsize.lo gmx_mdmat.lo gmx_wham.lo correl.lo gmx_sham.lo gmx_nmtraj.lo gmx_trjconv.lo gmx_trjcat.lo gmx_trjorder.lo gmx_xpm2ps.lo gmx_editconf.lo gmx_genbox.lo gmx_genion.lo gmx_genconf.lo gmx_genpr.lo gmx_eneconv.lo gmx_vanhove.lo gmx_wheel.lo addconf.lo calcpot.lo edittop.lo ../gmxlib/libgmx_mpi_d.la ../mdlib/libmd_mpi_d.la -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte -inst-prefix-dir /usr/src/tmp/gromacs-buildroot)  
mpicc -shared  .libs/autocorr.o .libs/expfit.o .libs/polynomials.o .libs/levenmar.o .libs/anadih.o .libs/pp2shift.o .libs/dlist.o .libs/eigio.o .libs/lsq.o .libs/cmat.o .libs/eigensolver.o .libs/nsc.o .libs/hxprops.o .libs/fitahx.o .libs/gmx_analyze.o .libs/gmx_anaeig.o .libs/gmx_angle.o .libs/gmx_bond.o .libs/gmx_bundle.o .libs/gmx_chi.o .libs/gmx_cluster.o .libs/gmx_confrms.o .libs/gmx_covar.o .libs/gmx_current.o .libs/gmx_density.o .libs/gmx_densmap.o .libs/gmx_dih.o .libs/gmx_dielectric.o .libs/gmx_kinetics.o .libs/gmx_spatial.o .libs/gmx_dipoles.o .libs/gmx_disre.o .libs/gmx_dist.o .libs/gmx_dyndom.o .libs/gmx_enemat.o .libs/gmx_energy.o .libs/gmx_lie.o .libs/gmx_filter.o .libs/gmx_gyrate.o .libs/gmx_h2order.o .libs/gmx_hbond.o .libs/gmx_helix.o .libs/gmx_mindist.o .libs/gmx_msd.o .libs/gmx_morph.o .libs/gmx_nmeig.o .libs/gmx_nmens.o .libs/gmx_order.o .libs/gmx_principal.o .libs/gmx_polystat.o .libs/gmx_potential.o .libs/gmx_rama.o .libs/gmx_rdf.o .libs/gmx_rms.o .libs/gmx_rmsdist.o .libs/gmx_rmsf.o .libs/gmx_rotacf.o .libs/gmx_saltbr.o .libs/gmx_sas.o .libs/gmx_sdf.o .libs/gmx_sgangle.o .libs/gmx_sorient.o .libs/gmx_spol.o .libs/gmx_tcaf.o .libs/gmx_traj.o .libs/gmx_velacc.o .libs/gmx_helixorient.o .libs/gmx_clustsize.o .libs/gmx_mdmat.o .libs/gmx_wham.o .libs/correl.o .libs/gmx_sham.o .libs/gmx_nmtraj.o .libs/gmx_trjconv.o .libs/gmx_trjcat.o .libs/gmx_trjorder.o .libs/gmx_xpm2ps.o .libs/gmx_editconf.o .libs/gmx_genbox.o .libs/gmx_genion.o .libs/gmx_genconf.o .libs/gmx_genpr.o .libs/gmx_eneconv.o .libs/gmx_vanhove.o .libs/gmx_wheel.o .libs/addconf.o .libs/calcpot.o .libs/edittop.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/lib/openmpi/lib -L/usr/src/tmp/gromacs-buildroot/usr/lib -L/usr/lib -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -L/usr/src/tmp/gromacs-buildroot/usr/lib/openmpi/lib -lmpi -lopen-pal -lopen-rte  -Wl,-Rpath:/usr/lib/openmpi/lib/ -Wl,-Rpath:/usr/lib/openmpi/lib -Wl,-soname -Wl,libgmxana_mpi_d.so.5 -o .libs/libgmxana_mpi_d.so.5.0.0
/bin/install -p .libs/libgmxana_mpi_d.so.5.0.0T /usr/src/tmp/gromacs-buildroot/usr/lib/libgmxana_mpi_d.so.5.0.0
(cd /usr/src/tmp/gromacs-buildroot/usr/lib && { ln -s -f libgmxana_mpi_d.so.5.0.0 libgmxana_mpi_d.so.5 || { rm -f libgmxana_mpi_d.so.5 && ln -s libgmxana_mpi_d.so.5.0.0 libgmxana_mpi_d.so.5; }; })
(cd /usr/src/tmp/gromacs-buildroot/usr/lib && { ln -s -f libgmxana_mpi_d.so.5.0.0 libgmxana_mpi_d.so || { rm -f libgmxana_mpi_d.so && ln -s libgmxana_mpi_d.so.5.0.0 libgmxana_mpi_d.so; }; })
/bin/install -p .libs/libgmxana_mpi_d.lai /usr/src/tmp/gromacs-buildroot/usr/lib/libgmxana_mpi_d.la
libtool: install: warning: remember to run `libtool --finish /usr/lib'
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/bin'
  /bin/sh ../../libtool   --mode=install /bin/install -p do_dssp '/usr/src/tmp/gromacs-buildroot/usr/bin/./do_dssp_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/do_dssp /usr/src/tmp/gromacs-buildroot/usr/bin/./do_dssp_mpi_d
  /bin/sh ../../libtool   --mode=install /bin/install -p editconf '/usr/src/tmp/gromacs-buildroot/usr/bin/./editconf_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/editconf /usr/src/tmp/gromacs-buildroot/usr/bin/./editconf_mpi_d
  /bin/sh ../../libtool   --mode=install /bin/install -p eneconv '/usr/src/tmp/gromacs-buildroot/usr/bin/./eneconv_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/eneconv /usr/src/tmp/gromacs-buildroot/usr/bin/./eneconv_mpi_d
  /bin/sh ../../libtool   --mode=install /bin/install -p genbox '/usr/src/tmp/gromacs-buildroot/usr/bin/./genbox_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/genbox /usr/src/tmp/gromacs-buildroot/usr/bin/./genbox_mpi_d
  /bin/sh ../../libtool   --mode=install /bin/install -p genconf '/usr/src/tmp/gromacs-buildroot/usr/bin/./genconf_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/genconf /usr/src/tmp/gromacs-buildroot/usr/bin/./genconf_mpi_d
  /bin/sh ../../libtool   --mode=install /bin/install -p genrestr '/usr/src/tmp/gromacs-buildroot/usr/bin/./genrestr_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/genrestr /usr/src/tmp/gromacs-buildroot/usr/bin/./genrestr_mpi_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_nmtraj '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_nmtraj_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_nmtraj /usr/src/tmp/gromacs-buildroot/usr/bin/./g_nmtraj_mpi_d
  /bin/sh ../../libtool   --mode=install /bin/install -p make_ndx '/usr/src/tmp/gromacs-buildroot/usr/bin/./make_ndx_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/make_ndx /usr/src/tmp/gromacs-buildroot/usr/bin/./make_ndx_mpi_d
  /bin/sh ../../libtool   --mode=install /bin/install -p mk_angndx '/usr/src/tmp/gromacs-buildroot/usr/bin/./mk_angndx_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/mk_angndx /usr/src/tmp/gromacs-buildroot/usr/bin/./mk_angndx_mpi_d
  /bin/sh ../../libtool   --mode=install /bin/install -p trjcat '/usr/src/tmp/gromacs-buildroot/usr/bin/./trjcat_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/trjcat /usr/src/tmp/gromacs-buildroot/usr/bin/./trjcat_mpi_d
  /bin/sh ../../libtool   --mode=install /bin/install -p trjconv '/usr/src/tmp/gromacs-buildroot/usr/bin/./trjconv_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/trjconv /usr/src/tmp/gromacs-buildroot/usr/bin/./trjconv_mpi_d
  /bin/sh ../../libtool   --mode=install /bin/install -p trjorder '/usr/src/tmp/gromacs-buildroot/usr/bin/./trjorder_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/trjorder /usr/src/tmp/gromacs-buildroot/usr/bin/./trjorder_mpi_d
  /bin/sh ../../libtool   --mode=install /bin/install -p wheel '/usr/src/tmp/gromacs-buildroot/usr/bin/./wheel_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/wheel /usr/src/tmp/gromacs-buildroot/usr/bin/./wheel_mpi_d
  /bin/sh ../../libtool   --mode=install /bin/install -p xpm2ps '/usr/src/tmp/gromacs-buildroot/usr/bin/./xpm2ps_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/xpm2ps /usr/src/tmp/gromacs-buildroot/usr/bin/./xpm2ps_mpi_d
  /bin/sh ../../libtool   --mode=install /bin/install -p genion '/usr/src/tmp/gromacs-buildroot/usr/bin/./genion_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/genion /usr/src/tmp/gromacs-buildroot/usr/bin/./genion_mpi_d
  /bin/sh ../../libtool   --mode=install /bin/install -p anadock '/usr/src/tmp/gromacs-buildroot/usr/bin/./anadock_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/anadock /usr/src/tmp/gromacs-buildroot/usr/bin/./anadock_mpi_d
  /bin/sh ../../libtool   --mode=install /bin/install -p make_edi '/usr/src/tmp/gromacs-buildroot/usr/bin/./make_edi_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/make_edi /usr/src/tmp/gromacs-buildroot/usr/bin/./make_edi_mpi_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_analyze '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_analyze_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_analyze /usr/src/tmp/gromacs-buildroot/usr/bin/./g_analyze_mpi_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_anaeig '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_anaeig_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_anaeig /usr/src/tmp/gromacs-buildroot/usr/bin/./g_anaeig_mpi_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_angle '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_angle_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_angle /usr/src/tmp/gromacs-buildroot/usr/bin/./g_angle_mpi_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_bond '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_bond_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_bond /usr/src/tmp/gromacs-buildroot/usr/bin/./g_bond_mpi_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_bundle '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_bundle_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_bundle /usr/src/tmp/gromacs-buildroot/usr/bin/./g_bundle_mpi_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_chi '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_chi_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_chi /usr/src/tmp/gromacs-buildroot/usr/bin/./g_chi_mpi_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_cluster '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_cluster_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_cluster /usr/src/tmp/gromacs-buildroot/usr/bin/./g_cluster_mpi_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_confrms '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_confrms_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_confrms /usr/src/tmp/gromacs-buildroot/usr/bin/./g_confrms_mpi_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_covar '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_covar_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_covar /usr/src/tmp/gromacs-buildroot/usr/bin/./g_covar_mpi_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_current '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_current_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_current /usr/src/tmp/gromacs-buildroot/usr/bin/./g_current_mpi_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_density '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_density_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_density /usr/src/tmp/gromacs-buildroot/usr/bin/./g_density_mpi_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_densmap '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_densmap_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_densmap /usr/src/tmp/gromacs-buildroot/usr/bin/./g_densmap_mpi_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_dih '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_dih_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_dih /usr/src/tmp/gromacs-buildroot/usr/bin/./g_dih_mpi_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_dielectric '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_dielectric_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_dielectric /usr/src/tmp/gromacs-buildroot/usr/bin/./g_dielectric_mpi_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_helixorient '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_helixorient_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_helixorient /usr/src/tmp/gromacs-buildroot/usr/bin/./g_helixorient_mpi_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_principal '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_principal_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_principal /usr/src/tmp/gromacs-buildroot/usr/bin/./g_principal_mpi_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_dipoles '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_dipoles_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_dipoles /usr/src/tmp/gromacs-buildroot/usr/bin/./g_dipoles_mpi_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_disre '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_disre_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_disre /usr/src/tmp/gromacs-buildroot/usr/bin/./g_disre_mpi_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_dist '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_dist_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_dist /usr/src/tmp/gromacs-buildroot/usr/bin/./g_dist_mpi_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_dyndom '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_dyndom_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_dyndom /usr/src/tmp/gromacs-buildroot/usr/bin/./g_dyndom_mpi_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_enemat '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_enemat_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_enemat /usr/src/tmp/gromacs-buildroot/usr/bin/./g_enemat_mpi_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_energy '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_energy_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_energy /usr/src/tmp/gromacs-buildroot/usr/bin/./g_energy_mpi_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_lie '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_lie_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_lie /usr/src/tmp/gromacs-buildroot/usr/bin/./g_lie_mpi_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_filter '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_filter_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_filter /usr/src/tmp/gromacs-buildroot/usr/bin/./g_filter_mpi_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_gyrate '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_gyrate_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_gyrate /usr/src/tmp/gromacs-buildroot/usr/bin/./g_gyrate_mpi_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_h2order '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_h2order_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_h2order /usr/src/tmp/gromacs-buildroot/usr/bin/./g_h2order_mpi_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_hbond '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_hbond_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_hbond /usr/src/tmp/gromacs-buildroot/usr/bin/./g_hbond_mpi_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_helix '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_helix_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_helix /usr/src/tmp/gromacs-buildroot/usr/bin/./g_helix_mpi_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_mindist '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_mindist_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_mindist /usr/src/tmp/gromacs-buildroot/usr/bin/./g_mindist_mpi_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_msd '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_msd_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_msd /usr/src/tmp/gromacs-buildroot/usr/bin/./g_msd_mpi_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_morph '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_morph_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_morph /usr/src/tmp/gromacs-buildroot/usr/bin/./g_morph_mpi_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_nmeig '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_nmeig_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_nmeig /usr/src/tmp/gromacs-buildroot/usr/bin/./g_nmeig_mpi_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_nmens '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_nmens_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_nmens /usr/src/tmp/gromacs-buildroot/usr/bin/./g_nmens_mpi_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_order '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_order_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_order /usr/src/tmp/gromacs-buildroot/usr/bin/./g_order_mpi_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_polystat '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_polystat_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_polystat /usr/src/tmp/gromacs-buildroot/usr/bin/./g_polystat_mpi_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_potential '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_potential_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_potential /usr/src/tmp/gromacs-buildroot/usr/bin/./g_potential_mpi_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_rama '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_rama_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_rama /usr/src/tmp/gromacs-buildroot/usr/bin/./g_rama_mpi_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_rdf '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_rdf_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_rdf /usr/src/tmp/gromacs-buildroot/usr/bin/./g_rdf_mpi_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_rms '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_rms_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_rms /usr/src/tmp/gromacs-buildroot/usr/bin/./g_rms_mpi_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_rmsdist '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_rmsdist_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_rmsdist /usr/src/tmp/gromacs-buildroot/usr/bin/./g_rmsdist_mpi_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_rmsf '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_rmsf_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_rmsf /usr/src/tmp/gromacs-buildroot/usr/bin/./g_rmsf_mpi_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_rotacf '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_rotacf_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_rotacf /usr/src/tmp/gromacs-buildroot/usr/bin/./g_rotacf_mpi_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_saltbr '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_saltbr_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_saltbr /usr/src/tmp/gromacs-buildroot/usr/bin/./g_saltbr_mpi_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_sas '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_sas_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_sas /usr/src/tmp/gromacs-buildroot/usr/bin/./g_sas_mpi_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_sgangle '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_sgangle_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_sgangle /usr/src/tmp/gromacs-buildroot/usr/bin/./g_sgangle_mpi_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_sham '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_sham_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_sham /usr/src/tmp/gromacs-buildroot/usr/bin/./g_sham_mpi_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_sorient '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_sorient_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_sorient /usr/src/tmp/gromacs-buildroot/usr/bin/./g_sorient_mpi_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_spol '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_spol_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_spol /usr/src/tmp/gromacs-buildroot/usr/bin/./g_spol_mpi_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_sdf '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_sdf_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_sdf /usr/src/tmp/gromacs-buildroot/usr/bin/./g_sdf_mpi_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_spatial '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_spatial_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_spatial /usr/src/tmp/gromacs-buildroot/usr/bin/./g_spatial_mpi_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_tcaf '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_tcaf_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_tcaf /usr/src/tmp/gromacs-buildroot/usr/bin/./g_tcaf_mpi_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_traj '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_traj_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_traj /usr/src/tmp/gromacs-buildroot/usr/bin/./g_traj_mpi_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_vanhove '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_vanhove_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_vanhove /usr/src/tmp/gromacs-buildroot/usr/bin/./g_vanhove_mpi_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_velacc '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_velacc_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_velacc /usr/src/tmp/gromacs-buildroot/usr/bin/./g_velacc_mpi_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_clustsize '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_clustsize_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_clustsize /usr/src/tmp/gromacs-buildroot/usr/bin/./g_clustsize_mpi_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_mdmat '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_mdmat_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_mdmat /usr/src/tmp/gromacs-buildroot/usr/bin/./g_mdmat_mpi_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_wham '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_wham_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_wham /usr/src/tmp/gromacs-buildroot/usr/bin/./g_wham_mpi_d
  /bin/sh ../../libtool   --mode=install /bin/install -p g_kinetics '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_kinetics_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/g_kinetics /usr/src/tmp/gromacs-buildroot/usr/bin/./g_kinetics_mpi_d
  /bin/sh ../../libtool   --mode=install /bin/install -p sigeps '/usr/src/tmp/gromacs-buildroot/usr/bin/./sigeps_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/sigeps /usr/src/tmp/gromacs-buildroot/usr/bin/./sigeps_mpi_d
make  install-exec-hook
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
libname="libgmxana_mpi_d"; \
nompi="`echo $libname | sed -e 's,_mpi,,'`"; \
libdir="/usr/lib"; \
if echo $libname | grep mpi >/dev/null ; then \
  (cd $libdir && test -e $libname.a -a ! -e $nompi.a && ln -s $libname.a $nompi.a ; exit 0); \
  (cd $libdir && test -e $libname.so -a ! -e $nompi.so && ln -s $libname.so $nompi.so ; exit 0); \
fi; 
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
Making install in ngmx
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/bin'
  /bin/sh ../../libtool   --mode=install /bin/install -p ngmx '/usr/src/tmp/gromacs-buildroot/usr/bin/./ngmx_mpi_d'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/ngmx /usr/src/tmp/gromacs-buildroot/usr/bin/./ngmx_mpi_d
  /bin/sh ../../libtool   --mode=install /bin/install -p xrama '/usr/src/tmp/gromacs-buildroot/usr/bin/./xrama_mpi_d'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/xrama /usr/src/tmp/gromacs-buildroot/usr/bin/./xrama_mpi_d
  /bin/sh ../../libtool   --mode=install /bin/install -p highway '/usr/src/tmp/gromacs-buildroot/usr/bin/./highway_mpi_d'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib'
/bin/install -p .libs/highway /usr/src/tmp/gromacs-buildroot/usr/bin/./highway_mpi_d
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
Making install in contrib
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/contrib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/contrib'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/contrib'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/contrib'
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src'
make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src'
Making install in admin
make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/admin'
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/admin'
make[2]: Nothing to be done for 'install-exec-am'.
make[2]: Nothing to be done for 'install-data-am'.
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/admin'
make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/admin'
Making install in scripts
make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/scripts'
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/scripts'
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/bin'
 /bin/install -p GMXRC GMXRC.csh GMXRC.bash GMXRC.zsh '/usr/src/tmp/gromacs-buildroot/usr/bin'
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/bin'
 /bin/install -p ../../scripts/completion.csh ../../scripts/completion.bash ../../scripts/completion.zsh ../../scripts/demux.pl ../../scripts/xplor2gmx.pl '/usr/src/tmp/gromacs-buildroot/usr/bin'
make[2]: Nothing to be done for 'install-data-am'.
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/scripts'
make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/scripts'
Making install in share
make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share'
Making install in top
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/top'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/top'
make[3]: Nothing to be done for 'install-exec-am'.
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/top'
 /bin/install -p -m 644 ../../../share/top/ffgmx.itp ../../../share/top/ffgmxnb.itp ../../../share/top/ffgmxbon.itp ../../../share/top/ffgmx.atp ../../../share/top/ffgmx.hdb ../../../share/top/ffgmx.rtp ../../../share/top/ffgmx-c.tdb ../../../share/top/ffgmx-n.tdb ../../../share/top/ffgmx2.itp ../../../share/top/ffgmx2nb.itp ../../../share/top/ffgmx2bon.itp ../../../share/top/ffgmx2.atp ../../../share/top/ffgmx2.hdb ../../../share/top/ffgmx2.rtp ../../../share/top/ffgmx2-c.tdb ../../../share/top/ffgmx2-n.tdb ../../../share/top/ffG43a1.itp ../../../share/top/ffG43a1nb.itp ../../../share/top/ffG43a1bon.itp ../../../share/top/ffG43a1.atp ../../../share/top/ffG43a1.hdb ../../../share/top/ffG43a1.rtp ../../../share/top/ffG43a1-c.tdb ../../../share/top/ffG43a1-n.tdb ../../../share/top/ffG43a2.itp ../../../share/top/ffG43a2nb.itp ../../../share/top/ffG43a2bon.itp ../../../share/top/ffG43a2.atp ../../../share/top/ffG43a2.hdb ../../../share/top/ffG43a2.rtp ../../../share/top/ffG43a2-c.tdb ../../../share/top/ffG43a2-n.tdb ../../../share/top/ffgmx.ddb ../../../share/top/ffgmx2.ddb ../../../share/top/ffG43a1.ddb ../../../share/top/ffG43a2.ddb ../../../share/top/ffG45a3-c.tdb ../../../share/top/ffG45a3.atp ../../../share/top/ffG45a3.hdb ../../../share/top/ffG45a3.rtp '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/top'
 /bin/install -p -m 644 ../../../share/top/ffG45a3nb.itp ../../../share/top/ffG45a3-n.tdb ../../../share/top/ffG45a3.ddb ../../../share/top/ffG45a3.itp ../../../share/top/ffG45a3bon.itp ../../../share/top/ffG53a5-c.tdb ../../../share/top/ffG53a5.atp ../../../share/top/ffG53a5.hdb ../../../share/top/ffG53a5.rtp ../../../share/top/ffG53a5nb.itp ../../../share/top/ffG53a5-n.tdb ../../../share/top/ffG53a5.ddb ../../../share/top/ffG53a5.itp ../../../share/top/ffG53a5bon.itp ../../../share/top/ffG53a5.n2t ../../../share/top/ffG53a6-c.tdb ../../../share/top/ffG53a6.atp ../../../share/top/ffG53a6.hdb ../../../share/top/ffG53a6.rtp ../../../share/top/ffG53a6nb.itp ../../../share/top/ffG53a6-n.tdb ../../../share/top/ffG53a6.ddb ../../../share/top/ffG53a6.itp ../../../share/top/ffG53a6bon.itp ../../../share/top/ffoplsaa.atp ../../../share/top/ffoplsaa.itp ../../../share/top/ffoplsaabon.itp ../../../share/top/ffoplsaanb.itp ../../../share/top/ffoplsaa.hdb ../../../share/top/ffoplsaa-n.tdb ../../../share/top/ffoplsaa-c.tdb ../../../share/top/ffoplsaa.rtp ../../../share/top/ffoplsaa.ddb ../../../share/top/ffoplsaa.n2t ../../../share/top/ffencads-c.tdb ../../../share/top/ffencads.itp ../../../share/top/ffencadv-c.tdb ../../../share/top/ffencadv.itp ../../../share/top/ffencads-n.tdb ../../../share/top/ffencads.rtp '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/top'
 /bin/install -p -m 644 ../../../share/top/ffencadv-n.tdb ../../../share/top/ffencadv.rtp ../../../share/top/ffencads.atp ../../../share/top/ffencadsbon.itp ../../../share/top/ffencadv.atp ../../../share/top/ffencadvbon.itp ../../../share/top/ffencads.hdb ../../../share/top/ffencadsnb.itp ../../../share/top/ffencadv.hdb ../../../share/top/ffencadvnb.itp ../../../share/top/1mlg.itp ../../../share/top/2mlg.itp ../../../share/top/benzamide.itp ../../../share/top/bondadd.itp ../../../share/top/buck.itp ../../../share/top/decane.itp ../../../share/top/dlg.itp ../../../share/top/dmso.itp ../../../share/top/fa.itp ../../../share/top/ff_dum.itp ../../../share/top/flexspc.itp ../../../share/top/flexspce.itp ../../../share/top/flexwat-ferguson.itp ../../../share/top/h2p4o13.itp ../../../share/top/h2p8o25.itp ../../../share/top/h2po4.itp ../../../share/top/ions.itp ../../../share/top/methanol.itp ../../../share/top/spc.itp ../../../share/top/spce.itp ../../../share/top/tfe.itp ../../../share/top/tip3p.itp ../../../share/top/tip4p.itp ../../../share/top/urea.itp ../../../share/top/dgsolv.dat ../../../share/top/electroneg.dat ../../../share/top/dec50.gro ../../../share/top/dmso.gro ../../../share/top/spc216.gro ../../../share/top/tip4p.gro '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/top'
 /bin/install -p -m 644 ../../../share/top/urea+h2o.gro ../../../share/top/f3c.itp ../../../share/top/aminoacids.dat ../../../share/top/atommass.dat ../../../share/top/bromacs.dat ../../../share/top/ca-shift.dat ../../../share/top/cb-shift.dat ../../../share/top/co-shift.dat ../../../share/top/edissoc.dat ../../../share/top/FF.dat ../../../share/top/gurgle.dat ../../../share/top/ha-shift.dat ../../../share/top/links.dat ../../../share/top/phbres.dat ../../../share/top/random.dat ../../../share/top/refi_aa.dat ../../../share/top/specbond.dat ../../../share/top/surface.dat ../../../share/top/vdwradii.dat ../../../share/top/xlateat.dat ../../../share/top/highway.dat ../../../share/top/export.dlg ../../../share/top/bonds.dlg ../../../share/top/ss.map ../../../share/top/ps.m2p ../../../share/top/table6-10.xvg ../../../share/top/table6-11.xvg ../../../share/top/table6-12.xvg ../../../share/top/table6-8.xvg ../../../share/top/table6-9.xvg ../../../share/top/atom_nom.tbl ../../../share/top/gromacs.dtd ../../../share/top/tip5p.gro ../../../share/top/tip5p.itp ../../../share/top/sw.itp ../../../share/top/elements.dat '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/top'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/top'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/top'
Making install in tutor
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/tutor'
Making install in nmr1
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/tutor/nmr1'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/tutor/nmr1'
make[4]: Nothing to be done for 'install-exec-am'.
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/nmr1'
 /bin/install -p -m 644 ../../../../share/tutor/nmr1/conf.gro ../../../../share/tutor/nmr1/grompp.mdp ../../../../share/tutor/nmr1/pep.pdb ../../../../share/tutor/nmr1/topol.top '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/nmr1'
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/tutor/nmr1'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/tutor/nmr1'
Making install in nmr2
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/tutor/nmr2'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/tutor/nmr2'
make[4]: Nothing to be done for 'install-exec-am'.
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/nmr2'
 /bin/install -p -m 644 ../../../../share/tutor/nmr2/conf.gro ../../../../share/tutor/nmr2/genconf.gcp ../../../../share/tutor/nmr2/grompp.mdp ../../../../share/tutor/nmr2/pep.pdb ../../../../share/tutor/nmr2/topol.top '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/nmr2'
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/tutor/nmr2'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/tutor/nmr2'
Making install in speptide
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/tutor/speptide'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/tutor/speptide'
make[4]: Nothing to be done for 'install-exec-am'.
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/speptide'
 /bin/install -p -m 644 ../../../../share/tutor/speptide/em.mdp ../../../../share/tutor/speptide/full.mdp ../../../../share/tutor/speptide/pr.mdp ../../../../share/tutor/speptide/speptide.pdb '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/speptide'
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/tutor/speptide'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/tutor/speptide'
Making install in water
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/tutor/water'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/tutor/water'
make[4]: Nothing to be done for 'install-exec-am'.
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/water'
 /bin/install -p -m 644 ../../../../share/tutor/water/index.ndx ../../../../share/tutor/water/conf.gro ../../../../share/tutor/water/spc216.pdb ../../../../share/tutor/water/grompp.mdp ../../../../share/tutor/water/topol.top '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/water'
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/tutor/water'
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Making install in gmxdemo
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 /bin/install -p -m 644 ../../../../share/tutor/gmxdemo/cpeptide.pdb '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/gmxdemo'
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/gmxdemo'
 /bin/install -p ../../../../share/tutor/gmxdemo/demo '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/gmxdemo/./demo_mpi_d'
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/tutor/gmxdemo'
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Making install in methanol
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 /bin/install -p -m 644 ../../../../share/tutor/methanol/index.ndx ../../../../share/tutor/methanol/conf.gro ../../../../share/tutor/methanol/methanol.pdb ../../../../share/tutor/methanol/grompp.mdp ../../../../share/tutor/methanol/topol.top ../../../../share/tutor/methanol/methanol.itp '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/methanol'
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Making install in mixed
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Making install in template
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 /bin/install -p -m 644 ../../../share/template/template.c ../../../share/template/README Makefile.i586-alt-linux-gnu_double '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/template'
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Making install in html
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Making install in .
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 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/html'
 /bin/install -p -m 644 ../../../share/html/online.html ../../../share/html/gmxfaq.html '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/html'
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Making install in images
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 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/html/images'
 /bin/install -p -m 644 ../../../../share/html/images/features.gif ../../../../share/html/images/flow_leftrightup.gif ../../../../share/html/images/flow_vrule.gif ../../../../share/html/images/flow_down.gif ../../../../share/html/images/flow_leftup.gif ../../../../share/html/images/links.gif ../../../../share/html/images/articles.gif ../../../../share/html/images/flow_downleft.gif ../../../../share/html/images/flow_right+left.gif ../../../../share/html/images/mail.gif ../../../../share/html/images/bench.gif ../../../../share/html/images/flow_hline.gif ../../../../share/html/images/flow_right.gif ../../../../share/html/images/manual.gif ../../../../share/html/images/charts_down.gif ../../../../share/html/images/flow_left.gif ../../../../share/html/images/flow_rightleftdown.gif ../../../../share/html/images/gmxlogo_small.jpg ../../../../share/html/images/charts_up.gif ../../../../share/html/images/flow_leftright.gif ../../../../share/html/images/flow_uprightleft.gif ../../../../share/html/images/software.gif ../../../../share/html/images/faq.gif ../../../../share/html/images/flow_leftrightdown.gif ../../../../share/html/images/flow_vline.gif ../../../../share/html/images/topologies.gif ../../../../share/html/images/plotje.gif ../../../../share/html/images/xvgr.gif ../../../../share/html/images/1ctf-0.jpg ../../../../share/html/images/1ctf-0.2.jpg ../../../../share/html/images/1ctf-0.5.jpg ../../../../share/html/images/1ctf-1.jpg ../../../../share/html/images/1ctf-4.jpg ../../../../share/html/images/1ctf-10.jpg '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/html/images'
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Making install in online
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/html/online'
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 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/html/online'
 /bin/install -p -m 644 ../../../../share/html/online/cpt.html ../../../../share/html/online/dat.html ../../../../share/html/online/g_disre.html ../../../../share/html/online/g_sorient.html ../../../../share/html/online/ndx.html ../../../../share/html/online/dlg.html ../../../../share/html/online/g_dist.html ../../../../share/html/online/g_tcaf.html ../../../../share/html/online/ngmx.html ../../../../share/html/online/do_dssp.html ../../../../share/html/online/g_dyndom.html ../../../../share/html/online/g_traj.html ../../../../share/html/online/edi.html ../../../../share/html/online/g_enemat.html ../../../../share/html/online/g_velacc.html ../../../../share/html/online/options.html ../../../../share/html/online/editconf.html ../../../../share/html/online/g_energy.html ../../../../share/html/online/genbox.html ../../../../share/html/online/out.html ../../../../share/html/online/edo.html ../../../../share/html/online/g_gyrate.html ../../../../share/html/online/genconf.html ../../../../share/html/online/pdb.html ../../../../share/html/online/edr.html ../../../../share/html/online/g_h2order.html ../../../../share/html/online/genion.html ../../../../share/html/online/pdb2gmx.html ../../../../share/html/online/ene.html ../../../../share/html/online/g_hbond.html ../../../../share/html/online/genpr.html ../../../../share/html/online/protonate.html ../../../../share/html/online/eneconv.html ../../../../share/html/online/g_helix.html ../../../../share/html/online/getting_started.html ../../../../share/html/online/rtp.html ../../../../share/html/online/eps.html ../../../../share/html/online/g_lie.html ../../../../share/html/online/gmxcheck.html ../../../../share/html/online/tex.html '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/html/online'
 /bin/install -p -m 644 ../../../../share/html/online/files.html ../../../../share/html/online/g_mdmat.html ../../../../share/html/online/gmxdump.html ../../../../share/html/online/top.html ../../../../share/html/online/flow.html ../../../../share/html/online/g_mindist.html ../../../../share/html/online/gro.html ../../../../share/html/online/tpa.html ../../../../share/html/online/g87.html ../../../../share/html/online/g_morph.html ../../../../share/html/online/grompp.html ../../../../share/html/online/tpb.html ../../../../share/html/online/g96.html ../../../../share/html/online/g_msd.html ../../../../share/html/online/hat.html ../../../../share/html/online/tpbconv.html ../../../../share/html/online/g_anaeig.html ../../../../share/html/online/g_nmeig.html ../../../../share/html/online/highway.html ../../../../share/html/online/tpr.html ../../../../share/html/online/g_analyze.html ../../../../share/html/online/g_nmens.html ../../../../share/html/online/include_bot.html ../../../../share/html/online/trj.html ../../../../share/html/online/g_angle.html ../../../../share/html/online/g_order.html ../../../../share/html/online/include_top.html ../../../../share/html/online/trjcat.html ../../../../share/html/online/g_bond.html ../../../../share/html/online/g_potential.html ../../../../share/html/online/itp.html ../../../../share/html/online/trjconv.html ../../../../share/html/online/g_bundle.html ../../../../share/html/online/g_rama.html ../../../../share/html/online/log.html ../../../../share/html/online/trjorder.html ../../../../share/html/online/g_chi.html ../../../../share/html/online/g_rdf.html ../../../../share/html/online/m2p.html ../../../../share/html/online/trr.html '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/html/online'
 /bin/install -p -m 644 ../../../../share/html/online/g_cluster.html ../../../../share/html/online/g_rms.html ../../../../share/html/online/make_ndx.html ../../../../share/html/online/wheel.html ../../../../share/html/online/g_confrms.html ../../../../share/html/online/g_rmsdist.html ../../../../share/html/online/map.html ../../../../share/html/online/x2top.html ../../../../share/html/online/g_covar.html ../../../../share/html/online/g_rmsf.html ../../../../share/html/online/mdp.html ../../../../share/html/online/xpm.html ../../../../share/html/online/g_density.html ../../../../share/html/online/g_rotacf.html ../../../../share/html/online/mdp_opt.html ../../../../share/html/online/xpm2ps.html ../../../../share/html/online/g_dielectric.html ../../../../share/html/online/g_saltbr.html ../../../../share/html/online/mdrun.html ../../../../share/html/online/xrama.html ../../../../share/html/online/g_dih.html ../../../../share/html/online/g_sas.html ../../../../share/html/online/mk_angndx.html ../../../../share/html/online/xtc.html ../../../../share/html/online/g_dipoles.html ../../../../share/html/online/g_sgangle.html ../../../../share/html/online/mtx.html ../../../../share/html/online/xvg.html ../../../../share/html/online/g_densmap.html ../../../../share/html/online/g_sham.html ../../../../share/html/online/make_edi.html ../../../../share/html/online/style.css ../../../../share/html/online/water.html ../../../../share/html/online/gmxdemo.html ../../../../share/html/online/speptide.html ../../../../share/html/online/yourown.html ../../../../share/html/online/methanol.html ../../../../share/html/online/mixed.html ../../../../share/html/online/protunf.html '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/html/online'
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/html/online'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/html/online'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/html'
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share'
make[3]: Nothing to be done for 'install-exec-am'.
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make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share'
make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share'
Making install in man
make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/man'
Making install in man1
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/man/man1'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/man/man1'
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 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1'
 /bin/install -p -m 644 '../../../man/man1/anadock.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/anadock_mpi_d.1'
 /bin/install -p -m 644 '../../../man/man1/do_dssp.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/do_dssp_mpi_d.1'
 /bin/install -p -m 644 '../../../man/man1/editconf.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/editconf_mpi_d.1'
 /bin/install -p -m 644 '../../../man/man1/eneconv.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/eneconv_mpi_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_anaeig.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_anaeig_mpi_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_analyze.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_analyze_mpi_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_angle.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_angle_mpi_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_bond.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_bond_mpi_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_bundle.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_bundle_mpi_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_chi.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_chi_mpi_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_cluster.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_cluster_mpi_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_clustsize.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_clustsize_mpi_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_confrms.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_confrms_mpi_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_covar.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_covar_mpi_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_current.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_current_mpi_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_density.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_density_mpi_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_densmap.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_densmap_mpi_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_dielectric.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_dielectric_mpi_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_dih.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_dih_mpi_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_dipoles.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_dipoles_mpi_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_disre.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_disre_mpi_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_dist.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_dist_mpi_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_dyndom.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_dyndom_mpi_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_enemat.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_enemat_mpi_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_energy.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_energy_mpi_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_filter.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_filter_mpi_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_gyrate.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_gyrate_mpi_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_h2order.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_h2order_mpi_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_hbond.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_hbond_mpi_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_helix.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_helix_mpi_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_helixorient.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_helixorient_mpi_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_kinetics.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_kinetics_mpi_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_lie.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_lie_mpi_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_mdmat.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_mdmat_mpi_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_mindist.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_mindist_mpi_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_morph.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_morph_mpi_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_msd.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_msd_mpi_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_nmeig.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_nmeig_mpi_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_nmens.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_nmens_mpi_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_nmtraj.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_nmtraj_mpi_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_order.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_order_mpi_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_polystat.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_polystat_mpi_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_potential.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_potential_mpi_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_principal.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_principal_mpi_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_rama.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_rama_mpi_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_rdf.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_rdf_mpi_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_rms.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_rms_mpi_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_rmsdist.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_rmsdist_mpi_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_rmsf.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_rmsf_mpi_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_rotacf.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_rotacf_mpi_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_saltbr.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_saltbr_mpi_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_sas.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_sas_mpi_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_sdf.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_sdf_mpi_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_sgangle.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_sgangle_mpi_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_sham.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_sham_mpi_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_sorient.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_sorient_mpi_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_spatial.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_spatial_mpi_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_spol.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_spol_mpi_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_tcaf.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_tcaf_mpi_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_traj.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_traj_mpi_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_vanhove.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_vanhove_mpi_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_velacc.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_velacc_mpi_d.1'
 /bin/install -p -m 644 '../../../man/man1/g_wham.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_wham_mpi_d.1'
 /bin/install -p -m 644 '../../../man/man1/gen_table.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/gen_table_mpi_d.1'
 /bin/install -p -m 644 '../../../man/man1/genbox.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/genbox_mpi_d.1'
 /bin/install -p -m 644 '../../../man/man1/genconf.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/genconf_mpi_d.1'
 /bin/install -p -m 644 '../../../man/man1/genion.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/genion_mpi_d.1'
 /bin/install -p -m 644 '../../../man/man1/genrestr.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/genrestr_mpi_d.1'
 /bin/install -p -m 644 '../../../man/man1/gmxcheck.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/gmxcheck_mpi_d.1'
 /bin/install -p -m 644 '../../../man/man1/gmxdump.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/gmxdump_mpi_d.1'
 /bin/install -p -m 644 '../../../man/man1/grompp.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/grompp_mpi_d.1'
 /bin/install -p -m 644 '../../../man/man1/highway.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/highway_mpi_d.1'
 /bin/install -p -m 644 '../../../man/man1/make_edi.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/make_edi_mpi_d.1'
 /bin/install -p -m 644 '../../../man/man1/make_ndx.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/make_ndx_mpi_d.1'
 /bin/install -p -m 644 '../../../man/man1/mdrun.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/mdrun_mpi_d.1'
 /bin/install -p -m 644 '../../../man/man1/mk_angndx.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/mk_angndx_mpi_d.1'
 /bin/install -p -m 644 '../../../man/man1/ngmx.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/ngmx_mpi_d.1'
 /bin/install -p -m 644 '../../../man/man1/pdb2gmx.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/pdb2gmx_mpi_d.1'
 /bin/install -p -m 644 '../../../man/man1/protonate.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/protonate_mpi_d.1'
 /bin/install -p -m 644 '../../../man/man1/sigeps.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/sigeps_mpi_d.1'
 /bin/install -p -m 644 '../../../man/man1/tpbconv.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/tpbconv_mpi_d.1'
 /bin/install -p -m 644 '../../../man/man1/trjcat.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/trjcat_mpi_d.1'
 /bin/install -p -m 644 '../../../man/man1/trjconv.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/trjconv_mpi_d.1'
 /bin/install -p -m 644 '../../../man/man1/trjorder.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/trjorder_mpi_d.1'
 /bin/install -p -m 644 '../../../man/man1/wheel.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/wheel_mpi_d.1'
 /bin/install -p -m 644 '../../../man/man1/x2top.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/x2top_mpi_d.1'
 /bin/install -p -m 644 '../../../man/man1/xpm2ps.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/xpm2ps_mpi_d.1'
 /bin/install -p -m 644 '../../../man/man1/xrama.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/xrama_mpi_d.1'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/man/man1'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/man/man1'
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/man'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/man'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/man'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/man'
make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/man'
make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double'
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double'
make  install-exec-hook
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double'

GROMACS is installed under /usr.
Make sure to update your PATH and MANPATH to find the
programs and unix manual pages, and possibly LD_LIBRARY_PATH
or /etc/ld.so.conf if you are using dynamic libraries.

Please run "make tests" now to verify your installation.

If you want links to the executables in /usr/local/bin,
you can issue "make links" now.
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double'
make[2]: Nothing to be done for 'install-data-am'.
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double'
make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double'
make: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double'
+ popd
~/RPM/BUILD/gromacs-4.0.7
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway luck make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/anadock /usr/src/tmp/gromacs-buildroot/usr/bin/g_anadock
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/anadock_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_anadock_d
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway luck make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/do_dssp /usr/src/tmp/gromacs-buildroot/usr/bin/g_do_dssp
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/do_dssp_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_do_dssp_d
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway luck make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/editconf /usr/src/tmp/gromacs-buildroot/usr/bin/g_editconf
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/editconf_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_editconf_d
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway luck make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/eneconv /usr/src/tmp/gromacs-buildroot/usr/bin/g_eneconv
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/eneconv_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_eneconv_d
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway luck make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/genbox /usr/src/tmp/gromacs-buildroot/usr/bin/g_genbox
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/genbox_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_genbox_d
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway luck make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/genconf /usr/src/tmp/gromacs-buildroot/usr/bin/g_genconf
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/genconf_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_genconf_d
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway luck make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/genion /usr/src/tmp/gromacs-buildroot/usr/bin/g_genion
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/genion_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_genion_d
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway luck make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/genrestr /usr/src/tmp/gromacs-buildroot/usr/bin/g_genrestr
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/genrestr_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_genrestr_d
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway luck make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/gmxcheck /usr/src/tmp/gromacs-buildroot/usr/bin/g_gmxcheck
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/gmxcheck_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_gmxcheck_d
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway luck make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/gmxdump /usr/src/tmp/gromacs-buildroot/usr/bin/g_gmxdump
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/gmxdump_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_gmxdump_d
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway luck make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/grompp /usr/src/tmp/gromacs-buildroot/usr/bin/g_grompp
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/grompp_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_grompp_d
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway luck make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/highway /usr/src/tmp/gromacs-buildroot/usr/bin/g_highway
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/highway_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_highway_d
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway luck make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/luck /usr/src/tmp/gromacs-buildroot/usr/bin/g_luck
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/luck_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_luck_d
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway luck make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/make_edi /usr/src/tmp/gromacs-buildroot/usr/bin/g_make_edi
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/make_edi_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_make_edi_d
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway luck make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/make_ndx /usr/src/tmp/gromacs-buildroot/usr/bin/g_make_ndx
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/make_ndx_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_make_ndx_d
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway luck make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/mdrun /usr/src/tmp/gromacs-buildroot/usr/bin/g_mdrun
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/mdrun_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_mdrun_d
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway luck make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/mk_angndx /usr/src/tmp/gromacs-buildroot/usr/bin/g_mk_angndx
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/mk_angndx_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_mk_angndx_d
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway luck make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/ngmx /usr/src/tmp/gromacs-buildroot/usr/bin/g_ngmx
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/ngmx_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_ngmx_d
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway luck make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/pdb2gmx /usr/src/tmp/gromacs-buildroot/usr/bin/g_pdb2gmx
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/pdb2gmx_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_pdb2gmx_d
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway luck make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/protonate /usr/src/tmp/gromacs-buildroot/usr/bin/g_protonate
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/protonate_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_protonate_d
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway luck make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/sigeps /usr/src/tmp/gromacs-buildroot/usr/bin/g_sigeps
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/sigeps_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_sigeps_d
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway luck make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/tpbconv /usr/src/tmp/gromacs-buildroot/usr/bin/g_tpbconv
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/tpbconv_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_tpbconv_d
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway luck make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/trjcat /usr/src/tmp/gromacs-buildroot/usr/bin/g_trjcat
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/trjcat_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_trjcat_d
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway luck make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/trjconv /usr/src/tmp/gromacs-buildroot/usr/bin/g_trjconv
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/trjconv_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_trjconv_d
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway luck make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/trjorder /usr/src/tmp/gromacs-buildroot/usr/bin/g_trjorder
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/trjorder_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_trjorder_d
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway luck make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/wheel /usr/src/tmp/gromacs-buildroot/usr/bin/g_wheel
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/wheel_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_wheel_d
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway luck make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/x2top /usr/src/tmp/gromacs-buildroot/usr/bin/g_x2top
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/x2top_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_x2top_d
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway luck make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/xpm2ps /usr/src/tmp/gromacs-buildroot/usr/bin/g_xpm2ps
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/xpm2ps_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_xpm2ps_d
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway luck make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/xrama /usr/src/tmp/gromacs-buildroot/usr/bin/g_xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/xrama_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_xrama_d
+ for bin in demux.pl xplor2gmx.pl
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/demux.pl /usr/src/tmp/gromacs-buildroot/usr/bin/g_demux.pl
+ for bin in demux.pl xplor2gmx.pl
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/xplor2gmx.pl /usr/src/tmp/gromacs-buildroot/usr/bin/g_xplor2gmx.pl
+ for mpibin in mdrun
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/mdrun_mpi /usr/src/tmp/gromacs-buildroot/usr/bin/g_mdrun_mpi
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/mdrun_mpi_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_mdrun_mpi_d
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/anadock.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_anadock.1
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/anadock_d.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_anadock_d.1
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/do_dssp.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_do_dssp.1
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/do_dssp_d.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_do_dssp_d.1
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/editconf.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_editconf.1
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/editconf_d.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_editconf_d.1
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/eneconv.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_eneconv.1
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/eneconv_d.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_eneconv_d.1
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/genbox.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_genbox.1
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/genbox_d.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_genbox_d.1
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/genconf.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_genconf.1
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/genconf_d.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_genconf_d.1
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/genion.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_genion.1
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/genion_d.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_genion_d.1
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/genrestr.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_genrestr.1
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/genrestr_d.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_genrestr_d.1
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/gmxcheck.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_gmxcheck.1
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/gmxcheck_d.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_gmxcheck_d.1
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/gmxdump.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_gmxdump.1
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/gmxdump_d.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_gmxdump_d.1
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/grompp.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_grompp.1
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/grompp_d.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_grompp_d.1
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/highway.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_highway.1
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/highway_d.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_highway_d.1
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/make_edi.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_make_edi.1
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/make_edi_d.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_make_edi_d.1
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/make_ndx.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_make_ndx.1
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/make_ndx_d.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_make_ndx_d.1
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/mdrun.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_mdrun.1
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/mdrun_d.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_mdrun_d.1
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/mk_angndx.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_mk_angndx.1
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/mk_angndx_d.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_mk_angndx_d.1
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/ngmx.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_ngmx.1
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/ngmx_d.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_ngmx_d.1
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/pdb2gmx.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_pdb2gmx.1
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/pdb2gmx_d.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_pdb2gmx_d.1
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/protonate.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_protonate.1
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/protonate_d.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_protonate_d.1
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/sigeps.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_sigeps.1
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/sigeps_d.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_sigeps_d.1
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/tpbconv.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_tpbconv.1
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/tpbconv_d.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_tpbconv_d.1
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/trjcat.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_trjcat.1
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/trjcat_d.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_trjcat_d.1
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/trjconv.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_trjconv.1
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/trjconv_d.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_trjconv_d.1
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/trjorder.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_trjorder.1
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/trjorder_d.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_trjorder_d.1
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/wheel.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_wheel.1
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/wheel_d.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_wheel_d.1
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/x2top.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_x2top.1
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/x2top_d.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_x2top_d.1
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/xpm2ps.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_xpm2ps.1
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/xpm2ps_d.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_xpm2ps_d.1
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/xrama.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_xrama.1
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/xrama_d.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_xrama_d.1
+ chmod a-x /usr/src/tmp/gromacs-buildroot/usr/bin/completion.bash /usr/src/tmp/gromacs-buildroot/usr/bin/completion.csh /usr/src/tmp/gromacs-buildroot/usr/bin/completion.zsh
+ mkdir -p /usr/src/tmp/gromacs-buildroot/usr/share/zsh/site-functions
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/completion.zsh /usr/src/tmp/gromacs-buildroot/usr/share/zsh/site-functions/gromacs
+ mkdir -p /usr/src/tmp/gromacs-buildroot/etc/bash_completion.d
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/completion.bash /usr/src/tmp/gromacs-buildroot/etc/bash_completion.d/gromacs
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/completion.csh .
+ rm -rf /usr/src/tmp/gromacs-buildroot//usr/lib/libgmx.la /usr/src/tmp/gromacs-buildroot//usr/lib/libgmx_d.la /usr/src/tmp/gromacs-buildroot//usr/lib/libgmx_mpi.la /usr/src/tmp/gromacs-buildroot//usr/lib/libgmx_mpi_d.la /usr/src/tmp/gromacs-buildroot//usr/lib/libgmxana.la /usr/src/tmp/gromacs-buildroot//usr/lib/libgmxana_d.la /usr/src/tmp/gromacs-buildroot//usr/lib/libgmxana_mpi.la /usr/src/tmp/gromacs-buildroot//usr/lib/libgmxana_mpi_d.la /usr/src/tmp/gromacs-buildroot//usr/lib/libmd.la /usr/src/tmp/gromacs-buildroot//usr/lib/libmd_d.la /usr/src/tmp/gromacs-buildroot//usr/lib/libmd_mpi.la /usr/src/tmp/gromacs-buildroot//usr/lib/libmd_mpi_d.la
+ mv mpi-single/src/mdlib/.libs/libmd_mpi.so mpi-single/src/mdlib/.libs/libmd_mpi.so.5 mpi-single/src/mdlib/.libs/libmd_mpi.so.5.0.0 mpi-single/src/mdlib/.libs/libmd_mpi.so.5.0.0T /usr/src/tmp/gromacs-buildroot/usr/lib/
+ mv mpi-double/src/mdlib/.libs/libmd_mpi_d.so mpi-double/src/mdlib/.libs/libmd_mpi_d.so.5 mpi-double/src/mdlib/.libs/libmd_mpi_d.so.5.0.0 mpi-double/src/mdlib/.libs/libmd_mpi_d.so.5.0.0T /usr/src/tmp/gromacs-buildroot/usr/lib/
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/GMXRC
`/usr/src/tmp/gromacs-buildroot/usr/bin/GMXRC' probably isn't an ELF file.
elf_open: Exec format error
+ :
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/GMXRC.bash
`/usr/src/tmp/gromacs-buildroot/usr/bin/GMXRC.bash' probably isn't an ELF file.
elf_open: Exec format error
+ :
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/GMXRC.csh
`/usr/src/tmp/gromacs-buildroot/usr/bin/GMXRC.csh' probably isn't an ELF file.
elf_open: Exec format error
+ :
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/GMXRC.zsh
`/usr/src/tmp/gromacs-buildroot/usr/bin/GMXRC.zsh' probably isn't an ELF file.
elf_open: Exec format error
+ :
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/anadock_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/anadock_mpi: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/anadock_mpi: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/anadock_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/anadock_mpi_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/anadock_mpi_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/do_dssp_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/do_dssp_mpi: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/do_dssp_mpi: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/do_dssp_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/do_dssp_mpi_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/do_dssp_mpi_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/editconf_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/editconf_mpi: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/editconf_mpi: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/editconf_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/editconf_mpi_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/editconf_mpi_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/eneconv_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/eneconv_mpi: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/eneconv_mpi: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/eneconv_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/eneconv_mpi_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/eneconv_mpi_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_anadock
/usr/src/tmp/gromacs-buildroot/usr/bin/g_anadock: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_anadock: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_anadock_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_anadock_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_anadock_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_anaeig
/usr/src/tmp/gromacs-buildroot/usr/bin/g_anaeig: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_anaeig: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_anaeig_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_anaeig_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_anaeig_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_anaeig_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_anaeig_mpi: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_anaeig_mpi: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_anaeig_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_anaeig_mpi_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_anaeig_mpi_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_analyze
/usr/src/tmp/gromacs-buildroot/usr/bin/g_analyze: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_analyze: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_analyze_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_analyze_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_analyze_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_analyze_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_analyze_mpi: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_analyze_mpi: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_analyze_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_analyze_mpi_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_analyze_mpi_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_angle
/usr/src/tmp/gromacs-buildroot/usr/bin/g_angle: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_angle: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_angle_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_angle_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_angle_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_angle_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_angle_mpi: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_angle_mpi: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_angle_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_angle_mpi_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_angle_mpi_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_bond
/usr/src/tmp/gromacs-buildroot/usr/bin/g_bond: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_bond: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_bond_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_bond_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_bond_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_bond_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_bond_mpi: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_bond_mpi: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_bond_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_bond_mpi_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_bond_mpi_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_bundle
/usr/src/tmp/gromacs-buildroot/usr/bin/g_bundle: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_bundle: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_bundle_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_bundle_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_bundle_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_bundle_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_bundle_mpi: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_bundle_mpi: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_bundle_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_bundle_mpi_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_bundle_mpi_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_chi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_chi: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_chi: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_chi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_chi_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_chi_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_chi_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_chi_mpi: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_chi_mpi: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_chi_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_chi_mpi_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_chi_mpi_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_cluster
/usr/src/tmp/gromacs-buildroot/usr/bin/g_cluster: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_cluster: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_cluster_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_cluster_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_cluster_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_cluster_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_cluster_mpi: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_cluster_mpi: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_cluster_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_cluster_mpi_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_cluster_mpi_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_clustsize
/usr/src/tmp/gromacs-buildroot/usr/bin/g_clustsize: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_clustsize: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_clustsize_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_clustsize_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_clustsize_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_clustsize_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_clustsize_mpi: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_clustsize_mpi: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_clustsize_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_clustsize_mpi_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_clustsize_mpi_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_confrms
/usr/src/tmp/gromacs-buildroot/usr/bin/g_confrms: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_confrms: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_confrms_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_confrms_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_confrms_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_confrms_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_confrms_mpi: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_confrms_mpi: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_confrms_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_confrms_mpi_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_confrms_mpi_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_covar
/usr/src/tmp/gromacs-buildroot/usr/bin/g_covar: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_covar: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_covar_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_covar_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_covar_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_covar_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_covar_mpi: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_covar_mpi: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_covar_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_covar_mpi_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_covar_mpi_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_current
/usr/src/tmp/gromacs-buildroot/usr/bin/g_current: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_current: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_current_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_current_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_current_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_current_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_current_mpi: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_current_mpi: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_current_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_current_mpi_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_current_mpi_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_demux.pl
`/usr/src/tmp/gromacs-buildroot/usr/bin/g_demux.pl' probably isn't an ELF file.
elf_open: Exec format error
+ :
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_density
/usr/src/tmp/gromacs-buildroot/usr/bin/g_density: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_density: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_density_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_density_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_density_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_density_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_density_mpi: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_density_mpi: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_density_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_density_mpi_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_density_mpi_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_densmap
/usr/src/tmp/gromacs-buildroot/usr/bin/g_densmap: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_densmap: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_densmap_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_densmap_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_densmap_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_densmap_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_densmap_mpi: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_densmap_mpi: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_densmap_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_densmap_mpi_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_densmap_mpi_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_dielectric
/usr/src/tmp/gromacs-buildroot/usr/bin/g_dielectric: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_dielectric: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_dielectric_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_dielectric_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_dielectric_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_dielectric_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_dielectric_mpi: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_dielectric_mpi: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_dielectric_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_dielectric_mpi_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_dielectric_mpi_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_dih
/usr/src/tmp/gromacs-buildroot/usr/bin/g_dih: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_dih: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_dih_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_dih_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_dih_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_dih_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_dih_mpi: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_dih_mpi: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_dih_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_dih_mpi_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_dih_mpi_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_dipoles
/usr/src/tmp/gromacs-buildroot/usr/bin/g_dipoles: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_dipoles: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_dipoles_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_dipoles_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_dipoles_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_dipoles_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_dipoles_mpi: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_dipoles_mpi: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_dipoles_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_dipoles_mpi_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_dipoles_mpi_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_disre
/usr/src/tmp/gromacs-buildroot/usr/bin/g_disre: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_disre: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_disre_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_disre_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_disre_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_disre_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_disre_mpi: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_disre_mpi: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_disre_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_disre_mpi_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_disre_mpi_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_dist
/usr/src/tmp/gromacs-buildroot/usr/bin/g_dist: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_dist: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_dist_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_dist_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_dist_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_dist_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_dist_mpi: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_dist_mpi: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_dist_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_dist_mpi_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_dist_mpi_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_do_dssp
/usr/src/tmp/gromacs-buildroot/usr/bin/g_do_dssp: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_do_dssp: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_do_dssp_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_do_dssp_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_do_dssp_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_dyndom
/usr/src/tmp/gromacs-buildroot/usr/bin/g_dyndom: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_dyndom: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_dyndom_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_dyndom_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_dyndom_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_dyndom_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_dyndom_mpi: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_dyndom_mpi: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_dyndom_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_dyndom_mpi_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_dyndom_mpi_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_editconf
/usr/src/tmp/gromacs-buildroot/usr/bin/g_editconf: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_editconf: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_editconf_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_editconf_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_editconf_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_eneconv
/usr/src/tmp/gromacs-buildroot/usr/bin/g_eneconv: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_eneconv: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_eneconv_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_eneconv_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_eneconv_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_enemat
/usr/src/tmp/gromacs-buildroot/usr/bin/g_enemat: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_enemat: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_enemat_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_enemat_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_enemat_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_enemat_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_enemat_mpi: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_enemat_mpi: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_enemat_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_enemat_mpi_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_enemat_mpi_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_energy
/usr/src/tmp/gromacs-buildroot/usr/bin/g_energy: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_energy: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_energy_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_energy_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_energy_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_energy_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_energy_mpi: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_energy_mpi: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_energy_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_energy_mpi_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_energy_mpi_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_filter
/usr/src/tmp/gromacs-buildroot/usr/bin/g_filter: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_filter: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_filter_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_filter_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_filter_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_filter_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_filter_mpi: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_filter_mpi: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_filter_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_filter_mpi_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_filter_mpi_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_genbox
/usr/src/tmp/gromacs-buildroot/usr/bin/g_genbox: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_genbox: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_genbox_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_genbox_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_genbox_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_genconf
/usr/src/tmp/gromacs-buildroot/usr/bin/g_genconf: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_genconf: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_genconf_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_genconf_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_genconf_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_genion
/usr/src/tmp/gromacs-buildroot/usr/bin/g_genion: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_genion: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_genion_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_genion_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_genion_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_genrestr
/usr/src/tmp/gromacs-buildroot/usr/bin/g_genrestr: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_genrestr: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_genrestr_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_genrestr_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_genrestr_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_gmxcheck
/usr/src/tmp/gromacs-buildroot/usr/bin/g_gmxcheck: RPATH=path:/usr/lib/openmpi/lib/
/usr/src/tmp/gromacs-buildroot/usr/bin/g_gmxcheck: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_gmxcheck_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_gmxcheck_d: RPATH=path:/usr/lib/openmpi/lib/
/usr/src/tmp/gromacs-buildroot/usr/bin/g_gmxcheck_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_gmxdump
/usr/src/tmp/gromacs-buildroot/usr/bin/g_gmxdump: RPATH=path:/usr/lib/openmpi/lib/
/usr/src/tmp/gromacs-buildroot/usr/bin/g_gmxdump: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_gmxdump_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_gmxdump_d: RPATH=path:/usr/lib/openmpi/lib/
/usr/src/tmp/gromacs-buildroot/usr/bin/g_gmxdump_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_grompp
/usr/src/tmp/gromacs-buildroot/usr/bin/g_grompp: RPATH=path:/usr/lib/openmpi/lib/
/usr/src/tmp/gromacs-buildroot/usr/bin/g_grompp: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_grompp_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_grompp_d: RPATH=path:/usr/lib/openmpi/lib/
/usr/src/tmp/gromacs-buildroot/usr/bin/g_grompp_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_gyrate
/usr/src/tmp/gromacs-buildroot/usr/bin/g_gyrate: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_gyrate: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_gyrate_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_gyrate_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_gyrate_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_gyrate_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_gyrate_mpi: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_gyrate_mpi: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_gyrate_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_gyrate_mpi_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_gyrate_mpi_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_h2order
/usr/src/tmp/gromacs-buildroot/usr/bin/g_h2order: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_h2order: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_h2order_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_h2order_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_h2order_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_h2order_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_h2order_mpi: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_h2order_mpi: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_h2order_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_h2order_mpi_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_h2order_mpi_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_hbond
/usr/src/tmp/gromacs-buildroot/usr/bin/g_hbond: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_hbond: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_hbond_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_hbond_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_hbond_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_hbond_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_hbond_mpi: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_hbond_mpi: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_hbond_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_hbond_mpi_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_hbond_mpi_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_helix
/usr/src/tmp/gromacs-buildroot/usr/bin/g_helix: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_helix: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_helix_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_helix_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_helix_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_helix_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_helix_mpi: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_helix_mpi: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_helix_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_helix_mpi_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_helix_mpi_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_helixorient
/usr/src/tmp/gromacs-buildroot/usr/bin/g_helixorient: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_helixorient: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_helixorient_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_helixorient_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_helixorient_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_helixorient_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_helixorient_mpi: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_helixorient_mpi: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_helixorient_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_helixorient_mpi_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_helixorient_mpi_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_highway
/usr/src/tmp/gromacs-buildroot/usr/bin/g_highway: RPATH=path:/usr/lib/openmpi/lib/
/usr/src/tmp/gromacs-buildroot/usr/bin/g_highway: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_highway_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_highway_d: RPATH=path:/usr/lib/openmpi/lib/
/usr/src/tmp/gromacs-buildroot/usr/bin/g_highway_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_kinetics
/usr/src/tmp/gromacs-buildroot/usr/bin/g_kinetics: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_kinetics: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_kinetics_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_kinetics_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_kinetics_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_kinetics_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_kinetics_mpi: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_kinetics_mpi: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_kinetics_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_kinetics_mpi_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_kinetics_mpi_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_lie
/usr/src/tmp/gromacs-buildroot/usr/bin/g_lie: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_lie: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_lie_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_lie_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_lie_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_lie_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_lie_mpi: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_lie_mpi: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_lie_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_lie_mpi_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_lie_mpi_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_luck
/usr/src/tmp/gromacs-buildroot/usr/bin/g_luck: RPATH=path:/usr/lib/openmpi/lib/
/usr/src/tmp/gromacs-buildroot/usr/bin/g_luck: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_luck_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_luck_d: RPATH=path:/usr/lib/openmpi/lib/
/usr/src/tmp/gromacs-buildroot/usr/bin/g_luck_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_make_edi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_make_edi: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_make_edi: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_make_edi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_make_edi_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_make_edi_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_make_ndx
/usr/src/tmp/gromacs-buildroot/usr/bin/g_make_ndx: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_make_ndx: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_make_ndx_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_make_ndx_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_make_ndx_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_mdmat
/usr/src/tmp/gromacs-buildroot/usr/bin/g_mdmat: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_mdmat: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_mdmat_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_mdmat_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_mdmat_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_mdmat_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_mdmat_mpi: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_mdmat_mpi: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_mdmat_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_mdmat_mpi_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_mdmat_mpi_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_mdrun
/usr/src/tmp/gromacs-buildroot/usr/bin/g_mdrun: RPATH=path:/usr/lib/openmpi/lib/
/usr/src/tmp/gromacs-buildroot/usr/bin/g_mdrun: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_mdrun_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_mdrun_d: RPATH=path:/usr/lib/openmpi/lib/
/usr/src/tmp/gromacs-buildroot/usr/bin/g_mdrun_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_mdrun_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_mdrun_mpi: RPATH=path:/usr/lib/openmpi/lib/:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_mdrun_mpi: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_mdrun_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_mdrun_mpi_d: RPATH=path:/usr/lib/openmpi/lib/:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_mdrun_mpi_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_mindist
/usr/src/tmp/gromacs-buildroot/usr/bin/g_mindist: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_mindist: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_mindist_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_mindist_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_mindist_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_mindist_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_mindist_mpi: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_mindist_mpi: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_mindist_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_mindist_mpi_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_mindist_mpi_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_mk_angndx
/usr/src/tmp/gromacs-buildroot/usr/bin/g_mk_angndx: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_mk_angndx: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_mk_angndx_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_mk_angndx_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_mk_angndx_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_morph
/usr/src/tmp/gromacs-buildroot/usr/bin/g_morph: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_morph: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_morph_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_morph_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_morph_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_morph_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_morph_mpi: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_morph_mpi: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_morph_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_morph_mpi_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_morph_mpi_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_msd
/usr/src/tmp/gromacs-buildroot/usr/bin/g_msd: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_msd: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_msd_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_msd_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_msd_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_msd_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_msd_mpi: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_msd_mpi: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_msd_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_msd_mpi_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_msd_mpi_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_ngmx
/usr/src/tmp/gromacs-buildroot/usr/bin/g_ngmx: RPATH=path:/usr/lib/openmpi/lib/
/usr/src/tmp/gromacs-buildroot/usr/bin/g_ngmx: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_ngmx_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_ngmx_d: RPATH=path:/usr/lib/openmpi/lib/
/usr/src/tmp/gromacs-buildroot/usr/bin/g_ngmx_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_nmeig
/usr/src/tmp/gromacs-buildroot/usr/bin/g_nmeig: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_nmeig: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_nmeig_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_nmeig_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_nmeig_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_nmeig_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_nmeig_mpi: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_nmeig_mpi: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_nmeig_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_nmeig_mpi_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_nmeig_mpi_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_nmens
/usr/src/tmp/gromacs-buildroot/usr/bin/g_nmens: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_nmens: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_nmens_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_nmens_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_nmens_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_nmens_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_nmens_mpi: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_nmens_mpi: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_nmens_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_nmens_mpi_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_nmens_mpi_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_nmtraj
/usr/src/tmp/gromacs-buildroot/usr/bin/g_nmtraj: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_nmtraj: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_nmtraj_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_nmtraj_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_nmtraj_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_nmtraj_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_nmtraj_mpi: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_nmtraj_mpi: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_nmtraj_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_nmtraj_mpi_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_nmtraj_mpi_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_order
/usr/src/tmp/gromacs-buildroot/usr/bin/g_order: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_order: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_order_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_order_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_order_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_order_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_order_mpi: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_order_mpi: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_order_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_order_mpi_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_order_mpi_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_pdb2gmx
/usr/src/tmp/gromacs-buildroot/usr/bin/g_pdb2gmx: RPATH=path:/usr/lib/openmpi/lib/
/usr/src/tmp/gromacs-buildroot/usr/bin/g_pdb2gmx: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_pdb2gmx_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_pdb2gmx_d: RPATH=path:/usr/lib/openmpi/lib/
/usr/src/tmp/gromacs-buildroot/usr/bin/g_pdb2gmx_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_polystat
/usr/src/tmp/gromacs-buildroot/usr/bin/g_polystat: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_polystat: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_polystat_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_polystat_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_polystat_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_polystat_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_polystat_mpi: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_polystat_mpi: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_polystat_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_polystat_mpi_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_polystat_mpi_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_potential
/usr/src/tmp/gromacs-buildroot/usr/bin/g_potential: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_potential: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_potential_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_potential_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_potential_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_potential_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_potential_mpi: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_potential_mpi: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_potential_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_potential_mpi_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_potential_mpi_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_principal
/usr/src/tmp/gromacs-buildroot/usr/bin/g_principal: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_principal: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_principal_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_principal_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_principal_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_principal_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_principal_mpi: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_principal_mpi: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_principal_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_principal_mpi_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_principal_mpi_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_protonate
/usr/src/tmp/gromacs-buildroot/usr/bin/g_protonate: RPATH=path:/usr/lib/openmpi/lib/
/usr/src/tmp/gromacs-buildroot/usr/bin/g_protonate: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_protonate_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_protonate_d: RPATH=path:/usr/lib/openmpi/lib/
/usr/src/tmp/gromacs-buildroot/usr/bin/g_protonate_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_rama
/usr/src/tmp/gromacs-buildroot/usr/bin/g_rama: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_rama: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_rama_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_rama_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_rama_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_rama_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_rama_mpi: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_rama_mpi: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_rama_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_rama_mpi_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_rama_mpi_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_rdf
/usr/src/tmp/gromacs-buildroot/usr/bin/g_rdf: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_rdf: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_rdf_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_rdf_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_rdf_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_rdf_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_rdf_mpi: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_rdf_mpi: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_rdf_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_rdf_mpi_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_rdf_mpi_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_rms
/usr/src/tmp/gromacs-buildroot/usr/bin/g_rms: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_rms: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_rms_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_rms_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_rms_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_rms_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_rms_mpi: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_rms_mpi: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_rms_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_rms_mpi_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_rms_mpi_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_rmsdist
/usr/src/tmp/gromacs-buildroot/usr/bin/g_rmsdist: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_rmsdist: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_rmsdist_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_rmsdist_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_rmsdist_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_rmsdist_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_rmsdist_mpi: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_rmsdist_mpi: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_rmsdist_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_rmsdist_mpi_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_rmsdist_mpi_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_rmsf
/usr/src/tmp/gromacs-buildroot/usr/bin/g_rmsf: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_rmsf: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_rmsf_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_rmsf_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_rmsf_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_rmsf_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_rmsf_mpi: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_rmsf_mpi: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_rmsf_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_rmsf_mpi_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_rmsf_mpi_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_rotacf
/usr/src/tmp/gromacs-buildroot/usr/bin/g_rotacf: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_rotacf: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_rotacf_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_rotacf_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_rotacf_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_rotacf_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_rotacf_mpi: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_rotacf_mpi: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_rotacf_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_rotacf_mpi_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_rotacf_mpi_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_saltbr
/usr/src/tmp/gromacs-buildroot/usr/bin/g_saltbr: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_saltbr: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_saltbr_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_saltbr_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_saltbr_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_saltbr_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_saltbr_mpi: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_saltbr_mpi: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_saltbr_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_saltbr_mpi_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_saltbr_mpi_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_sas
/usr/src/tmp/gromacs-buildroot/usr/bin/g_sas: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_sas: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_sas_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_sas_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_sas_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_sas_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_sas_mpi: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_sas_mpi: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_sas_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_sas_mpi_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_sas_mpi_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_sdf
/usr/src/tmp/gromacs-buildroot/usr/bin/g_sdf: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_sdf: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_sdf_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_sdf_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_sdf_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_sdf_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_sdf_mpi: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_sdf_mpi: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_sdf_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_sdf_mpi_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_sdf_mpi_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_sgangle
/usr/src/tmp/gromacs-buildroot/usr/bin/g_sgangle: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_sgangle: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_sgangle_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_sgangle_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_sgangle_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_sgangle_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_sgangle_mpi: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_sgangle_mpi: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_sgangle_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_sgangle_mpi_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_sgangle_mpi_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_sham
/usr/src/tmp/gromacs-buildroot/usr/bin/g_sham: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_sham: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_sham_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_sham_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_sham_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_sham_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_sham_mpi: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_sham_mpi: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_sham_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_sham_mpi_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_sham_mpi_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_sigeps
/usr/src/tmp/gromacs-buildroot/usr/bin/g_sigeps: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_sigeps: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_sigeps_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_sigeps_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_sigeps_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_sorient
/usr/src/tmp/gromacs-buildroot/usr/bin/g_sorient: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_sorient: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_sorient_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_sorient_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_sorient_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_sorient_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_sorient_mpi: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_sorient_mpi: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_sorient_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_sorient_mpi_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_sorient_mpi_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_spatial
/usr/src/tmp/gromacs-buildroot/usr/bin/g_spatial: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_spatial: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_spatial_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_spatial_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_spatial_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_spatial_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_spatial_mpi: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_spatial_mpi: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_spatial_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_spatial_mpi_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_spatial_mpi_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_spol
/usr/src/tmp/gromacs-buildroot/usr/bin/g_spol: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_spol: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_spol_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_spol_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_spol_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_spol_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_spol_mpi: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_spol_mpi: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_spol_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_spol_mpi_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_spol_mpi_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_tcaf
/usr/src/tmp/gromacs-buildroot/usr/bin/g_tcaf: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_tcaf: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_tcaf_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_tcaf_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_tcaf_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_tcaf_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_tcaf_mpi: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_tcaf_mpi: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_tcaf_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_tcaf_mpi_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_tcaf_mpi_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_tpbconv
/usr/src/tmp/gromacs-buildroot/usr/bin/g_tpbconv: RPATH=path:/usr/lib/openmpi/lib/
/usr/src/tmp/gromacs-buildroot/usr/bin/g_tpbconv: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_tpbconv_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_tpbconv_d: RPATH=path:/usr/lib/openmpi/lib/
/usr/src/tmp/gromacs-buildroot/usr/bin/g_tpbconv_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_traj
/usr/src/tmp/gromacs-buildroot/usr/bin/g_traj: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_traj: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_traj_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_traj_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_traj_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_traj_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_traj_mpi: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_traj_mpi: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_traj_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_traj_mpi_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_traj_mpi_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_trjcat
/usr/src/tmp/gromacs-buildroot/usr/bin/g_trjcat: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_trjcat: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_trjcat_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_trjcat_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_trjcat_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_trjconv
/usr/src/tmp/gromacs-buildroot/usr/bin/g_trjconv: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_trjconv: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_trjconv_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_trjconv_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_trjconv_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_trjorder
/usr/src/tmp/gromacs-buildroot/usr/bin/g_trjorder: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_trjorder: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_trjorder_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_trjorder_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_trjorder_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_vanhove
/usr/src/tmp/gromacs-buildroot/usr/bin/g_vanhove: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_vanhove: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_vanhove_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_vanhove_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_vanhove_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_vanhove_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_vanhove_mpi: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_vanhove_mpi: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_vanhove_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_vanhove_mpi_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_vanhove_mpi_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_velacc
/usr/src/tmp/gromacs-buildroot/usr/bin/g_velacc: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_velacc: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_velacc_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_velacc_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_velacc_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_velacc_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_velacc_mpi: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_velacc_mpi: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_velacc_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_velacc_mpi_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_velacc_mpi_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_wham
/usr/src/tmp/gromacs-buildroot/usr/bin/g_wham: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_wham: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_wham_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_wham_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_wham_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_wham_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_wham_mpi: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_wham_mpi: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_wham_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_wham_mpi_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_wham_mpi_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_wheel
/usr/src/tmp/gromacs-buildroot/usr/bin/g_wheel: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_wheel: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_wheel_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_wheel_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_wheel_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_x2top
/usr/src/tmp/gromacs-buildroot/usr/bin/g_x2top: RPATH=path:/usr/lib/openmpi/lib/
/usr/src/tmp/gromacs-buildroot/usr/bin/g_x2top: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_x2top_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_x2top_d: RPATH=path:/usr/lib/openmpi/lib/
/usr/src/tmp/gromacs-buildroot/usr/bin/g_x2top_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_xplor2gmx.pl
`/usr/src/tmp/gromacs-buildroot/usr/bin/g_xplor2gmx.pl' probably isn't an ELF file.
elf_open: Exec format error
+ :
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_xpm2ps
/usr/src/tmp/gromacs-buildroot/usr/bin/g_xpm2ps: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_xpm2ps: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_xpm2ps_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_xpm2ps_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_xpm2ps_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_xrama
/usr/src/tmp/gromacs-buildroot/usr/bin/g_xrama: RPATH=path:/usr/lib/openmpi/lib/
/usr/src/tmp/gromacs-buildroot/usr/bin/g_xrama: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_xrama_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_xrama_d: RPATH=path:/usr/lib/openmpi/lib/
/usr/src/tmp/gromacs-buildroot/usr/bin/g_xrama_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/genbox_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/genbox_mpi: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/genbox_mpi: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/genbox_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/genbox_mpi_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/genbox_mpi_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/genconf_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/genconf_mpi: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/genconf_mpi: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/genconf_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/genconf_mpi_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/genconf_mpi_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/genion_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/genion_mpi: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/genion_mpi: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/genion_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/genion_mpi_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/genion_mpi_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/genrestr_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/genrestr_mpi: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/genrestr_mpi: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/genrestr_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/genrestr_mpi_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/genrestr_mpi_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/gmxcheck_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/gmxcheck_mpi: RPATH=path:/usr/lib/openmpi/lib/:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/gmxcheck_mpi: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/gmxcheck_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/gmxcheck_mpi_d: RPATH=path:/usr/lib/openmpi/lib/:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/gmxcheck_mpi_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/gmxdump_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/gmxdump_mpi: RPATH=path:/usr/lib/openmpi/lib/:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/gmxdump_mpi: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/gmxdump_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/gmxdump_mpi_d: RPATH=path:/usr/lib/openmpi/lib/:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/gmxdump_mpi_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/grompp_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/grompp_mpi: RPATH=path:/usr/lib/openmpi/lib/:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/grompp_mpi: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/grompp_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/grompp_mpi_d: RPATH=path:/usr/lib/openmpi/lib/:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/grompp_mpi_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/highway_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/highway_mpi: RPATH=path:/usr/lib/openmpi/lib/:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/highway_mpi: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/highway_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/highway_mpi_d: RPATH=path:/usr/lib/openmpi/lib/:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/highway_mpi_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/luck_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/luck_mpi: RPATH=path:/usr/lib/openmpi/lib/:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/luck_mpi: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/luck_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/luck_mpi_d: RPATH=path:/usr/lib/openmpi/lib/:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/luck_mpi_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/make_edi_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/make_edi_mpi: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/make_edi_mpi: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/make_edi_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/make_edi_mpi_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/make_edi_mpi_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/make_ndx_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/make_ndx_mpi: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/make_ndx_mpi: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/make_ndx_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/make_ndx_mpi_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/make_ndx_mpi_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/mk_angndx_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/mk_angndx_mpi: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/mk_angndx_mpi: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/mk_angndx_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/mk_angndx_mpi_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/mk_angndx_mpi_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/ngmx_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/ngmx_mpi: RPATH=path:/usr/lib/openmpi/lib/:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/ngmx_mpi: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/ngmx_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/ngmx_mpi_d: RPATH=path:/usr/lib/openmpi/lib/:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/ngmx_mpi_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/pdb2gmx_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/pdb2gmx_mpi: RPATH=path:/usr/lib/openmpi/lib/:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/pdb2gmx_mpi: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/pdb2gmx_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/pdb2gmx_mpi_d: RPATH=path:/usr/lib/openmpi/lib/:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/pdb2gmx_mpi_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/protonate_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/protonate_mpi: RPATH=path:/usr/lib/openmpi/lib/:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/protonate_mpi: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/protonate_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/protonate_mpi_d: RPATH=path:/usr/lib/openmpi/lib/:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/protonate_mpi_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/sigeps_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/sigeps_mpi: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/sigeps_mpi: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/sigeps_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/sigeps_mpi_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/sigeps_mpi_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/tpbconv_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/tpbconv_mpi: RPATH=path:/usr/lib/openmpi/lib/:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/tpbconv_mpi: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/tpbconv_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/tpbconv_mpi_d: RPATH=path:/usr/lib/openmpi/lib/:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/tpbconv_mpi_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/trjcat_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/trjcat_mpi: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/trjcat_mpi: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/trjcat_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/trjcat_mpi_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/trjcat_mpi_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/trjconv_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/trjconv_mpi: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/trjconv_mpi: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/trjconv_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/trjconv_mpi_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/trjconv_mpi_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/trjorder_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/trjorder_mpi: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/trjorder_mpi: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/trjorder_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/trjorder_mpi_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/trjorder_mpi_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/wheel_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/wheel_mpi: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/wheel_mpi: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/wheel_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/wheel_mpi_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/wheel_mpi_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/x2top_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/x2top_mpi: RPATH=path:/usr/lib/openmpi/lib/:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/x2top_mpi: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/x2top_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/x2top_mpi_d: RPATH=path:/usr/lib/openmpi/lib/:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/x2top_mpi_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/xpm2ps_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/xpm2ps_mpi: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/xpm2ps_mpi: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/xpm2ps_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/xpm2ps_mpi_d: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/xpm2ps_mpi_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/xrama_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/xrama_mpi: RPATH=path:/usr/lib/openmpi/lib/:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/xrama_mpi: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/xrama_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/xrama_mpi_d: RPATH=path:/usr/lib/openmpi/lib/:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/xrama_mpi_d: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib/libgmx.so.5
/usr/src/tmp/gromacs-buildroot/usr/lib/libgmx.so.5: RPATH=path:/usr/lib/openmpi/lib/
/usr/src/tmp/gromacs-buildroot/usr/lib/libgmx.so.5: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib/libgmx.so.5.0.0
/usr/src/tmp/gromacs-buildroot/usr/lib/libgmx.so.5.0.0: RPATH=/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/lib/libgmx.so.5.0.0: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib/libgmx_d.so.5
/usr/src/tmp/gromacs-buildroot/usr/lib/libgmx_d.so.5: RPATH=path:/usr/lib/openmpi/lib/
/usr/src/tmp/gromacs-buildroot/usr/lib/libgmx_d.so.5: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib/libgmx_d.so.5.0.0
/usr/src/tmp/gromacs-buildroot/usr/lib/libgmx_d.so.5.0.0: RPATH=/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/lib/libgmx_d.so.5.0.0: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib/libgmx_mpi.so.5
/usr/src/tmp/gromacs-buildroot/usr/lib/libgmx_mpi.so.5: RPATH=path:/usr/lib/openmpi/lib/:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/lib/libgmx_mpi.so.5: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib/libgmx_mpi.so.5.0.0
/usr/src/tmp/gromacs-buildroot/usr/lib/libgmx_mpi.so.5.0.0: RPATH=/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/lib/libgmx_mpi.so.5.0.0: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib/libgmx_mpi_d.so.5
/usr/src/tmp/gromacs-buildroot/usr/lib/libgmx_mpi_d.so.5: RPATH=path:/usr/lib/openmpi/lib/:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/lib/libgmx_mpi_d.so.5: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib/libgmx_mpi_d.so.5.0.0
/usr/src/tmp/gromacs-buildroot/usr/lib/libgmx_mpi_d.so.5.0.0: RPATH=/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/lib/libgmx_mpi_d.so.5.0.0: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib/libgmxana.so.5
/usr/src/tmp/gromacs-buildroot/usr/lib/libgmxana.so.5: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/lib/libgmxana.so.5: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib/libgmxana.so.5.0.0
/usr/src/tmp/gromacs-buildroot/usr/lib/libgmxana.so.5.0.0: RPATH=/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/lib/libgmxana.so.5.0.0: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib/libgmxana_d.so.5
/usr/src/tmp/gromacs-buildroot/usr/lib/libgmxana_d.so.5: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/lib/libgmxana_d.so.5: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib/libgmxana_d.so.5.0.0
/usr/src/tmp/gromacs-buildroot/usr/lib/libgmxana_d.so.5.0.0: RPATH=/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/lib/libgmxana_d.so.5.0.0: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib/libgmxana_mpi.so.5
/usr/src/tmp/gromacs-buildroot/usr/lib/libgmxana_mpi.so.5: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/lib/libgmxana_mpi.so.5: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib/libgmxana_mpi.so.5.0.0
/usr/src/tmp/gromacs-buildroot/usr/lib/libgmxana_mpi.so.5.0.0: RPATH=/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/lib/libgmxana_mpi.so.5.0.0: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib/libgmxana_mpi_d.so.5
/usr/src/tmp/gromacs-buildroot/usr/lib/libgmxana_mpi_d.so.5: RPATH=path:/usr/lib/openmpi/lib/:path:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/lib/libgmxana_mpi_d.so.5: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib/libgmxana_mpi_d.so.5.0.0
/usr/src/tmp/gromacs-buildroot/usr/lib/libgmxana_mpi_d.so.5.0.0: RPATH=/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/lib/libgmxana_mpi_d.so.5.0.0: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib/libmd.so.5
/usr/src/tmp/gromacs-buildroot/usr/lib/libmd.so.5: RPATH=path:/usr/lib/openmpi/lib/
/usr/src/tmp/gromacs-buildroot/usr/lib/libmd.so.5: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib/libmd.so.5.0.0
/usr/src/tmp/gromacs-buildroot/usr/lib/libmd.so.5.0.0: RPATH=/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/lib/libmd.so.5.0.0: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib/libmd_d.so.5
/usr/src/tmp/gromacs-buildroot/usr/lib/libmd_d.so.5: RPATH=path:/usr/lib/openmpi/lib/
/usr/src/tmp/gromacs-buildroot/usr/lib/libmd_d.so.5: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib/libmd_d.so.5.0.0
/usr/src/tmp/gromacs-buildroot/usr/lib/libmd_d.so.5.0.0: RPATH=/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/lib/libmd_d.so.5.0.0: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib/libmd_mpi.so.5
/usr/src/tmp/gromacs-buildroot/usr/lib/libmd_mpi.so.5: RPATH=path:/usr/lib/openmpi/lib/:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/lib/libmd_mpi.so.5: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib/libmd_mpi.so.5.0.0
/usr/src/tmp/gromacs-buildroot/usr/lib/libmd_mpi.so.5.0.0: RPATH=/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/lib/libmd_mpi.so.5.0.0: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib/libmd_mpi.so.5.0.0T
/usr/src/tmp/gromacs-buildroot/usr/lib/libmd_mpi.so.5.0.0T: RPATH=path:/usr/lib/openmpi/lib/:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/lib/libmd_mpi.so.5.0.0T: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib/libmd_mpi_d.so.5
/usr/src/tmp/gromacs-buildroot/usr/lib/libmd_mpi_d.so.5: RPATH=path:/usr/lib/openmpi/lib/:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/lib/libmd_mpi_d.so.5: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib/libmd_mpi_d.so.5.0.0
/usr/src/tmp/gromacs-buildroot/usr/lib/libmd_mpi_d.so.5.0.0: RPATH=/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/lib/libmd_mpi_d.so.5.0.0: new RPATH: /usr/lib/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib/*.so.*
+ chrpath -r /usr/lib/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib/libmd_mpi_d.so.5.0.0T
/usr/src/tmp/gromacs-buildroot/usr/lib/libmd_mpi_d.so.5.0.0T: RPATH=path:/usr/lib/openmpi/lib/:/usr/lib/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/lib/libmd_mpi_d.so.5.0.0T: new RPATH: /usr/lib/openmpi/lib
+ /usr/lib/rpm/brp-alt
Cleaning files in /usr/src/tmp/gromacs-buildroot (auto)
mode of './usr/lib/libmd_mpi_d.so.5.0.0T' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--)
mode of './usr/lib/libmd_mpi_d.so.5.0.0' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--)
mode of './usr/lib/libmd_mpi.so.5.0.0T' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--)
mode of './usr/lib/libmd_mpi.so.5.0.0' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--)
mode of './usr/lib/libgmxana_mpi_d.so.5.0.0' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--)
mode of './usr/lib/libgmx_mpi_d.so.5.0.0' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--)
mode of './usr/lib/libgmxana_mpi.so.5.0.0' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--)
mode of './usr/lib/libgmx_mpi.so.5.0.0' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--)
mode of './usr/lib/libgmxana_d.so.5.0.0' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--)
mode of './usr/lib/libmd_d.so.5.0.0' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--)
mode of './usr/lib/libgmx_d.so.5.0.0' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--)
mode of './usr/lib/libgmxana.so.5.0.0' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--)
mode of './usr/lib/libmd.so.5.0.0' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--)
mode of './usr/lib/libgmx.so.5.0.0' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--)
Verifying and fixing files in /usr/src/tmp/gromacs-buildroot (binconfig,pkgconfig,libtool,desktop)
Checking contents of files in /usr/src/tmp/gromacs-buildroot/ (default)
Compressing files in /usr/src/tmp/gromacs-buildroot (auto)
Adjusting library links in /usr/src/tmp/gromacs-buildroot
./usr/lib:
	libgmx.so.5 -> libgmx.so.5.0.0
	libmd.so.5 -> libmd.so.5.0.0
	libgmxana.so.5 -> libgmxana.so.5.0.0
	libgmx_d.so.5 -> libgmx_d.so.5.0.0
	libmd_d.so.5 -> libmd_d.so.5.0.0
	libgmxana_d.so.5 -> libgmxana_d.so.5.0.0
	libgmx_mpi.so.5 -> libgmx_mpi.so.5.0.0
	libgmxana_mpi.so.5 -> libgmxana_mpi.so.5.0.0
	libgmx_mpi_d.so.5 -> libgmx_mpi_d.so.5.0.0
	libgmxana_mpi_d.so.5 -> libgmxana_mpi_d.so.5.0.0
	libmd_mpi.so.5 -> libmd_mpi.so.5.0.0T (changed)
	libmd_mpi_d.so.5 -> libmd_mpi_d.so.5.0.0T (changed)
Verifying ELF objects in /usr/src/tmp/gromacs-buildroot (arch=normal,fhs=normal,lfs=relaxed,lint=relaxed,rpath=normal,stack=normal,textrel=normal,unresolved=normal)
verify-elf: WARNING: ./usr/bin/g_mdrun_mpi_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_mdrun_mpi: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_xrama_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_xrama: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_xpm2ps_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_xpm2ps: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_x2top_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_x2top: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_wheel_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_wheel: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_trjorder_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_trjorder: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_trjconv_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_trjconv: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_trjcat_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_trjcat: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_tpbconv_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_tpbconv: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_sigeps_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_sigeps: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_protonate_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_protonate: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_pdb2gmx_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_pdb2gmx: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_ngmx_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_ngmx: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_mk_angndx_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_mk_angndx: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_mdrun_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_mdrun: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_make_ndx_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_make_ndx: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_make_edi_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_make_edi: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_luck_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_luck: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_highway_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_highway: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_grompp_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_grompp: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_gmxdump_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_gmxdump: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_gmxcheck_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_gmxcheck: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_genrestr_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_genrestr: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_genion_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_genion: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_genconf_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_genconf: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_genbox_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_genbox: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_eneconv_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_eneconv: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_editconf_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_editconf: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_do_dssp_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_do_dssp: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_anadock_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_anadock: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/highway_mpi_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/xrama_mpi_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/ngmx_mpi_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/sigeps_mpi_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_kinetics_mpi_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_wham_mpi_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_mdmat_mpi_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_clustsize_mpi_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_velacc_mpi_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_vanhove_mpi_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_traj_mpi_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_tcaf_mpi_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_spatial_mpi_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_sdf_mpi_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_spol_mpi_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_sorient_mpi_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_sham_mpi_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_sgangle_mpi_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_sas_mpi_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_saltbr_mpi_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_rotacf_mpi_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_rmsf_mpi_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_rmsdist_mpi_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_rms_mpi_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_rdf_mpi_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_rama_mpi_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_potential_mpi_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_polystat_mpi_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_order_mpi_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_nmens_mpi_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_nmeig_mpi_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_morph_mpi_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_msd_mpi_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_mindist_mpi_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_helix_mpi_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_hbond_mpi_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_h2order_mpi_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_gyrate_mpi_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_filter_mpi_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_lie_mpi_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_energy_mpi_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_enemat_mpi_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_dyndom_mpi_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_dist_mpi_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_disre_mpi_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_dipoles_mpi_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_principal_mpi_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_helixorient_mpi_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_dielectric_mpi_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_dih_mpi_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_densmap_mpi_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_density_mpi_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_current_mpi_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_covar_mpi_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_confrms_mpi_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_cluster_mpi_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_chi_mpi_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_bundle_mpi_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_bond_mpi_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_angle_mpi_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_anaeig_mpi_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_analyze_mpi_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/make_edi_mpi_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/anadock_mpi_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/genion_mpi_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/xpm2ps_mpi_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/wheel_mpi_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/trjorder_mpi_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/trjconv_mpi_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/trjcat_mpi_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/mk_angndx_mpi_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/make_ndx_mpi_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_nmtraj_mpi_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/genrestr_mpi_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/genconf_mpi_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/genbox_mpi_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/eneconv_mpi_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/editconf_mpi_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/do_dssp_mpi_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/x2top_mpi_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/gmxcheck_mpi_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/gmxdump_mpi_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/luck_mpi_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/protonate_mpi_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/pdb2gmx_mpi_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/tpbconv_mpi_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/grompp_mpi_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/highway_mpi: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/xrama_mpi: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/ngmx_mpi: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/sigeps_mpi: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_kinetics_mpi: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_wham_mpi: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_mdmat_mpi: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_clustsize_mpi: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_velacc_mpi: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_vanhove_mpi: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_traj_mpi: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_tcaf_mpi: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_spatial_mpi: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_sdf_mpi: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_spol_mpi: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_sorient_mpi: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_sham_mpi: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_sgangle_mpi: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_sas_mpi: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_saltbr_mpi: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_rotacf_mpi: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_rmsf_mpi: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_rmsdist_mpi: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_rms_mpi: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_rdf_mpi: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_rama_mpi: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_potential_mpi: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_polystat_mpi: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_order_mpi: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_nmens_mpi: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_nmeig_mpi: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_morph_mpi: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_msd_mpi: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_mindist_mpi: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_helix_mpi: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_hbond_mpi: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_h2order_mpi: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_gyrate_mpi: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_filter_mpi: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_lie_mpi: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_energy_mpi: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_enemat_mpi: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_dyndom_mpi: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_dist_mpi: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_disre_mpi: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_dipoles_mpi: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_principal_mpi: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_helixorient_mpi: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_dielectric_mpi: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_dih_mpi: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_densmap_mpi: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_density_mpi: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_current_mpi: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_covar_mpi: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_confrms_mpi: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_cluster_mpi: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_chi_mpi: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_bundle_mpi: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_bond_mpi: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_angle_mpi: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_anaeig_mpi: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_analyze_mpi: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/make_edi_mpi: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/anadock_mpi: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/genion_mpi: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/xpm2ps_mpi: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/wheel_mpi: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/trjorder_mpi: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/trjconv_mpi: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/trjcat_mpi: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/mk_angndx_mpi: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/make_ndx_mpi: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_nmtraj_mpi: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/genrestr_mpi: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/genconf_mpi: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/genbox_mpi: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/eneconv_mpi: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/editconf_mpi: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/do_dssp_mpi: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/x2top_mpi: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/gmxcheck_mpi: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/gmxdump_mpi: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/luck_mpi: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/protonate_mpi: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/pdb2gmx_mpi: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/tpbconv_mpi: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/grompp_mpi: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_kinetics_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_wham_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_mdmat_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_clustsize_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_velacc_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_vanhove_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_traj_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_tcaf_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_spatial_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_sdf_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_spol_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_sorient_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_sham_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_sgangle_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_sas_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_saltbr_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_rotacf_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_rmsf_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_rmsdist_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_rms_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_rdf_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_rama_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_potential_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_polystat_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_order_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_nmens_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_nmeig_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_morph_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_msd_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_mindist_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_helix_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_hbond_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_h2order_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_gyrate_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_filter_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_lie_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_energy_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_enemat_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_dyndom_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_dist_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_disre_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_dipoles_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_principal_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_helixorient_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_dielectric_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_dih_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_densmap_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_density_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_current_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_covar_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_confrms_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_cluster_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_chi_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_bundle_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_bond_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_angle_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_anaeig_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_analyze_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_nmtraj_d: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_kinetics: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_wham: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_mdmat: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_clustsize: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_velacc: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_vanhove: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_traj: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_tcaf: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_spatial: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_sdf: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_spol: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_sorient: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_sham: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_sgangle: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_sas: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_saltbr: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_rotacf: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_rmsf: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_rmsdist: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_rms: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_rdf: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_rama: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_potential: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_polystat: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_order: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_nmens: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_nmeig: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_morph: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_msd: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_mindist: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_helix: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_hbond: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_h2order: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_gyrate: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_filter: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_lie: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_energy: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_enemat: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_dyndom: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_dist: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_disre: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_dipoles: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_principal: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_helixorient: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_dielectric: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_dih: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_densmap: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_density: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_current: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_covar: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_confrms: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_cluster: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_chi: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_bundle: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_bond: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_angle: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_anaeig: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_analyze: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_nmtraj: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/lib/libmd_mpi_d.so.5.0.0T: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/lib/libmd_mpi_d.so.5.0.0: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/lib/libmd_mpi.so.5.0.0T: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/lib/libmd_mpi.so.5.0.0: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/lib/libgmxana_mpi_d.so.5.0.0: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/lib/libgmx_mpi_d.so.5.0.0: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/lib/libgmxana_mpi.so.5.0.0: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/lib/libgmx_mpi.so.5.0.0: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/lib/libgmxana_d.so.5.0.0: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/lib/libmd_d.so.5.0.0: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/lib/libgmx_d.so.5.0.0: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/lib/libgmxana.so.5.0.0: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/lib/libmd.so.5.0.0: RPATH entry found: /usr/lib/openmpi/lib
verify-elf: WARNING: ./usr/lib/libgmx.so.5.0.0: RPATH entry found: /usr/lib/openmpi/lib
Hardlinking identical .pyc and .pyo files
Processing files: gromacs-4.0.7-alt8
Finding Provides (using /usr/lib/rpm/find-provides)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.9rUxIW
find-provides: running scripts (alternatives,debuginfo,gir,lib,pam,perl,pkgconfig,python,shell,typelib)
Finding Requires (using /usr/lib/rpm/find-requires)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.F9SuEX
find-requires: running scripts (cpp,debuginfo,files,gir-js,gir-python,gir,lib,pam,perl,pkgconfig,pkgconfiglib,python,rpmlib,shebang,shell,static,symlinks,typelib)
lib.req: WARNING: /usr/src/tmp/gromacs-buildroot/usr/bin/g_analyze: overlinked libraries: /usr/lib/libopenblas.so.0
lib.req: WARNING: /usr/src/tmp/gromacs-buildroot/usr/bin/g_analyze_d: overlinked libraries: /usr/lib/libopenblas.so.0
lib.req: WARNING: /usr/src/tmp/gromacs-buildroot/usr/bin/g_analyze_mpi: overlinked libraries: /usr/lib/libopenblas.so.0
lib.req: WARNING: /usr/src/tmp/gromacs-buildroot/usr/bin/g_analyze_mpi_d: overlinked libraries: /usr/lib/libopenblas.so.0
lib.req: WARNING: /usr/src/tmp/gromacs-buildroot/usr/bin/g_hbond: overlinked libraries: /usr/lib/libopenblas.so.0
lib.req: WARNING: /usr/src/tmp/gromacs-buildroot/usr/bin/g_hbond_d: overlinked libraries: /usr/lib/libopenblas.so.0
lib.req: WARNING: /usr/src/tmp/gromacs-buildroot/usr/bin/g_hbond_mpi: overlinked libraries: /usr/lib/libopenblas.so.0
lib.req: WARNING: /usr/src/tmp/gromacs-buildroot/usr/bin/g_hbond_mpi_d: overlinked libraries: /usr/lib/libopenblas.so.0
lib.req: WARNING: /usr/src/tmp/gromacs-buildroot/usr/bin/g_kinetics: overlinked libraries: /usr/lib/libopenblas.so.0
lib.req: WARNING: /usr/src/tmp/gromacs-buildroot/usr/bin/g_kinetics_d: overlinked libraries: /usr/lib/libopenblas.so.0
lib.req: WARNING: /usr/src/tmp/gromacs-buildroot/usr/bin/g_kinetics_mpi: overlinked libraries: /usr/lib/libopenblas.so.0
lib.req: WARNING: /usr/src/tmp/gromacs-buildroot/usr/bin/g_kinetics_mpi_d: overlinked libraries: /usr/lib/libopenblas.so.0
/usr/src/tmp/gromacs-buildroot/usr/bin/g_demux.pl syntax OK
/usr/src/tmp/gromacs-buildroot/usr/bin/g_xplor2gmx.pl syntax OK
Requires: gromacs-common = 4.0.7-alt8, /lib/ld-linux.so.2, /usr/bin/perl, libX11.so.6 >= set:oiUgZmS1kvNxeWShD68IxxrZhWBJAmK824Jj27NZBiKhya7QJH2a20VekdqAOTaWymJYl3wBk2x1BdP2D3AgbBsEp3LisNUqVJRjZb3QbeyZoGS9M0ZwMaWyM9oEAYyr5ACLNAIN6, libc.so.6(GLIBC_2.0), libc.so.6(GLIBC_2.1), libc.so.6(GLIBC_2.3), libc.so.6(GLIBC_2.3.4), libc.so.6(GLIBC_2.4), libc.so.6(GLIBC_2.7), libgmx.so.5 >= set: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, libgmx_d.so.5 >= set:ofnT7x9YycAJK0KJESg86LkEkA5tSw5AbGqDP8brbBwUDV938QAZlnDPmjrDqxfKtckkXINkUXxkMXaVouooAbcjaiGRog1xqw9XKxNCxSZEZrY8Caqj6MimTCtFctO2f1dR6AZKqYB0efbnbLTVZoexZzZfL7dtD5K4qxKaDJL61NZroZ5zMyYoU41bC18bifyYOelcsVUZugCrKTRqx2Mw66enZi7xjZhPTx1nOABbLYaKycuJMJigV9cxN7clT2SSLujiM0WE0Zwp72tcwJVyy7ACouPzwBqpLiLAe7RiNVoAHVegF2pMk9LQpQZAoSJayZF6DIb3WlbjimwuqgrIndNAVZHn3yZ7PnQhitj5aHHof31JycmsHF5tHPHdldnwdv746jjH5FputMQD7HvMs2MDANPG7tAH3BkULrcQVZzMLEHK7vB4NjxM8g34rsdGq6lNqU4s9UNBsLsAjkVhh8N41bDX6rNj1N9wXhpUbwXeSZkkB670lh5XatY2rrGMAH90lMKn4TaFPijRctx7mEFrXLZqsJtP6mwIS6kFMAW43zobqEdajitZ21VfilEu2Jw91IdZ4opRtNEtT2ONwKlIar4jjCzQ4C1wxLIffafBJLESrPbJjCcvxK4y58M58LjMp3de7yrFJr52fHoTaAby36JPHUrfnZbRIDs4LjGimJHYfQYiFi3omojMAwT6HuVW2EZ2i8fnGZ1jfaTDCwB7RA4tZHDCNFra6AWrPJSgXIa3YB6Iw8MHx0g1yfrhABdMObGIDDXZlZ8gt6Zbo1kMO7ZfsQrq2bOCFgqNgMKkAZos03g9G1wDQZlRQqXOM74N5sQV9v21tOS4sgWVjbHiyxiqzI2ZDZvXCGy3SfPMzE4bPo9Wv3xd0izPAL7r73Ck9PcSAJ4GTj2OBy, libgmx_mpi.so.5 >= set:ofnT7x9YycAJK0KJESg86LkEkA5tSw5AbGqDP8brbBwEcb4qiZGVVwJjuoe6aGtSoaYZ0FwTlONYMM8noCkAkHNw22R0jShQJSZEZrwhbj6MimTCtFctO2f1dR6AZKqYB0efbnbLTVZoexZzZfL7dtD5K4qxKaDJL61NZrE1sA73D8oNc0phWhAnSFyxb7TTxcTsLHR25w1dcsKYBzM9ZEVXMwbpOOBnu5nh6LmUm9EY4CMU3CGr1rXnL99o0tkwv8XgEz1MaVwQ4Pru4IkbXlWBQVEmae7zsdrcA1jBYiDhZzxpTG8ZnqsOKcEiZJ2Qj3qzZaCoOYZB72qZiW8FKFYLSPggH8z5TZvQj1WmDnrGqK0rZuwMoqqJ8d31KuIZhcD0Y9pYIWh7VWg95ZrrcQ1W5uRR3sf52z0dgINREGpk5HxjMBw7nOZ27V4luk4ichMOVKNmYkgs2M37S3Jfhlqs0k5lIHQNbIJF2jKC0k1XuhsHAebdlPQ5uoxCKJZGLORSdro1OqrgB2jGjccyJExSEc9RRb1VfilEu2E6EdZ4opRtNEtT2g5hmBdyF9Phq2P00WBm8IV6BJLESrHZnXQfpOY5Wi8mw0nwYe1DdQUs8KBSKl8YIytHgK8eoQeLyLZclZCdX97NXAGAlXaZzQYiFi3omojMAwT6HuVy83MJ9vcZ8i3IUhd9hTZKFpw9os0VPRnqM2y0L62058Zsm4pp3IYyaXVVKvRzgt6Zbo1kMO7ZfsQrq2bOCFgqNgMKkAZos03g9G1wDQZlRQqXOM74N5sQV9v21tOS4sgqvp9Ng9JhmxZzZLtjlN1XDpUhkyBpI4Zf62r0A6D9vfSe6cFiCpI9r9kLD4Ab51, libgmx_mpi_d.so.5 >= set: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, libgsl.so.23 >= set:qmkdQnOro2KmlIXqZDc4OU3MRrrijCppBDL3ZvW6BZbfFFC4rJx1, libm.so.6(GLIBC_2.0), libm.so.6(GLIBC_2.1), libmd.so.5 >= set:mfgTAjqcF4B6GDIaXV8o5OZDA6tW5d5KpN5NRxMZqQ3EnzeV1Zs7bwD4WCV1g45t8kapnxqlnHPO8ZmaaCKADZrIVadAsws76SEMjrxCtVDmDZcHsyR8QCLXkF6LYDHONNZaIG9JzcQZtqygkPe5VycD3HwVASAL45rg6oyknzMmbMedpgYa8y6SeDgcnwZmcLgjAsbjuzyF9Zys4B53j40QPSkHC55v4WWNcWSrtk3BA0JMOLGnN, libmd_d.so.5 >= set:mfgTAjqcF4B6GDIaXV8o5OZDA6tW5d5KpN5NRxMZqQ3EnzeV1Zs7bwD4WCV1g45t8kapnxqlnHPO8ZmaaCKADZrIVadAsws76SEMjrxCtVDmDZcHsyR8QCLXkF6LYDHONNZaIG9JzcQZtqygkPe5VycD3HwVASAL45rg6oyknzMmbMedpgYa8y6SeDgcnwZmcLgjAsbjuzyF9Zys4B53j40QPSkHC55v4WWNcWSrtk3BA0JMOLGnN, libmd_mpi.so.5 >= set:mh0sFwfmV9xHPcy2WG2qSrrqPeqT9aqHkGGT5QPahYNXZFQw8z3, libmd_mpi_d.so.5 >= set:mh0sFwfmV9xHPcy2WG2qSrrqPeqT9aqHkGGT5QPahYNXZFQw8z3, libopenblas.so.0, rtld(GNU_HASH)
Requires(rpmlib): rpmlib(SetVersions)
Finding debuginfo files (using /usr/lib/rpm/find-debuginfo-files)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.yM3MQe
Creating gromacs-debuginfo package
Processing files: gromacs-libs-4.0.7-alt8
Finding Provides (using /usr/lib/rpm/find-provides)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.p8ql0O
find-provides: running scripts (alternatives,debuginfo,gir,lib,pam,perl,pkgconfig,python,shell,typelib)
lib.prov: /usr/src/tmp/gromacs-buildroot/usr/lib/libgmx.so.5: 1420 symbols, 21 bpp
lib.prov: /usr/src/tmp/gromacs-buildroot/usr/lib/libgmx_d.so.5: 1348 symbols, 21 bpp
lib.prov: /usr/src/tmp/gromacs-buildroot/usr/lib/libgmxana.so.5: 341 symbols, 19 bpp
lib.prov: /usr/src/tmp/gromacs-buildroot/usr/lib/libgmxana_d.so.5: 341 symbols, 19 bpp
lib.prov: /usr/src/tmp/gromacs-buildroot/usr/lib/libmd.so.5: 322 symbols, 19 bpp
lib.prov: /usr/src/tmp/gromacs-buildroot/usr/lib/libmd_d.so.5: 322 symbols, 19 bpp
Finding Requires (using /usr/lib/rpm/find-requires)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.rydPER
find-requires: running scripts (cpp,debuginfo,files,gir-js,gir-python,gir,lib,pam,perl,pkgconfig,pkgconfiglib,python,rpmlib,shebang,shell,static,symlinks,typelib)
lib.req: WARNING: /usr/src/tmp/gromacs-buildroot/usr/lib/libgmxana.so.5.0.0: overlinked libraries: /usr/lib/libopenblas.so.0
lib.req: WARNING: /usr/src/tmp/gromacs-buildroot/usr/lib/libgmxana_d.so.5.0.0: overlinked libraries: /usr/lib/libopenblas.so.0
lib.req: WARNING: /usr/src/tmp/gromacs-buildroot/usr/lib/libgmxana.so.5: overlinked libraries: /usr/lib/libopenblas.so.0
lib.req: WARNING: /usr/src/tmp/gromacs-buildroot/usr/lib/libgmxana_d.so.5: overlinked libraries: /usr/lib/libopenblas.so.0
Provides: libgmx.so.5 = set: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, libgmx_d.so.5 = set: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, libgmxana.so.5 = set:mdcRcdb3bg3YlKrz6hPWO7Mm31MGzVMITMWw135dqe9ym2Om44sGQs3Ze4ZgzG3LZ5Ywfdm4sOMpwthOpqGO6y7VBgkjUzXQ9y4Qt0tvllx5RmgoF6wk50uXUQqs2yNHyUZ60Xg9oym1vGApnaxKWOWyagi7657L4d56GZHLAeXmcQ6qi7KsNWhQKrlfbPKU10Pgg5lmU7rqG7wgw712ab7zDpiZwd8NFWti4yNjHMl1m8ARE3P1K1ABcuOzybbImuVEgacUEqk4o56Aoyd92XVmqXquzu1ZLVl46kFiUqbRRhrDYWfCZtgKa6SNYM5pKKHHdwSSlKZeHRh282RnwsplMlGKPKgK3oWaynFtfI62YZguKBqQL0INFXIuKJbRNEGFSnZqtZzy2GW8koTTxYqKuxyQPJVyPDPOf8DftcD7s3LSsZoBZF9t5dI8zmrjmMX1MY229wekoxmjU5lb8ZgWXZt5kb06mtBLzFee5kOZKdbVnzM9mW2eG4I4Wr5hQES8JLja5wGjvBvJcY8cAZ86PjxRDWZ9mfqkBbrlaevKOhkA06ZhZc4q2L1qZh6CvLZEv8A36GQ2IBfDM0QQY6HaMKYTkVlNP49WwfZudQrfMCXYtfgas7bcQmsonxSTNQZcvZ0ImLeZpgslay6gceqxR44USZqWx4kv6bwLWp7r91ec1ne9Of2, libgmxana_d.so.5 = set: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, libmd.so.5 = set: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, libmd_d.so.5 = set: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
Requires: gromacs-common = 4.0.7-alt8, libc.so.6(GLIBC_2.0), libc.so.6(GLIBC_2.1), libc.so.6(GLIBC_2.1.3), libc.so.6(GLIBC_2.11), libc.so.6(GLIBC_2.2), libc.so.6(GLIBC_2.3), libc.so.6(GLIBC_2.3.4), libc.so.6(GLIBC_2.4), libc.so.6(GLIBC_2.7), libfftw3.so.3 >= set:lhRviZyOH3Z6fGJT03sbjTGvskrJcZc8YJd6Z40NTd1, libfftw3f.so.3 >= set:lhFZpi5UEx4HyjpRfT63zoy92T3kgVbCLRWJcO8HL3, libgsl.so.23 >= set:qmkdQnOro2KmlIXqZDc4OU3MRrrijCppBDL3ZvW6BZbfFFC4rJx1, liblapack.so.4 >= set:omax1kCj8, libm.so.6(GLIBC_2.0), libm.so.6(GLIBC_2.1), libm.so.6(GLIBC_2.27), libopenblas.so.0, rtld(GNU_HASH)
Requires(rpmlib): rpmlib(SetVersions)
Finding debuginfo files (using /usr/lib/rpm/find-debuginfo-files)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.vpyRrc
Creating gromacs-libs-debuginfo package
Processing files: gromacs-mpi-4.0.7-alt8
Finding Provides (using /usr/lib/rpm/find-provides)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.qszfJL
find-provides: running scripts (alternatives,debuginfo,gir,lib,pam,perl,pkgconfig,python,shell,typelib)
Finding Requires (using /usr/lib/rpm/find-requires)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.WwjZXC
find-requires: running scripts (cpp,debuginfo,files,gir-js,gir-python,gir,lib,pam,perl,pkgconfig,pkgconfiglib,python,rpmlib,shebang,shell,static,symlinks,typelib)
Requires: gromacs-common = 4.0.7-alt8, /lib/ld-linux.so.2, /usr/lib/openmpi/lib/libmpi.so.20, libc.so.6(GLIBC_2.0), libc.so.6(GLIBC_2.3.4), libc.so.6(GLIBC_2.4), libc.so.6(GLIBC_2.7), libgmx_mpi.so.5 >= set:ohsOuTxkT4szlByhH3u8hMrApZdcEQbY868b0rYTQgUD0CvRIj4cHGGLm8BkTP1woJuRhrP9aukBHR8OngUbBLqumY4FxnK7pA8OsqZI5wyRNu986lgUnKnadfOpHWgnNHFWb7LqrPdmivKHv8j7JzKsZ2cG5aHmTGxZclJVfpcMvSxVFEtoJKNC0QjdahuN07q5ZtUWzVNZcaY0oY0UWqGrPa41, libgmx_mpi_d.so.5 >= set:ohsOuTxkT4szlByhH3u8hMrApZdcEQbY868b0rYTQgUD0CvRIj4cHGGLm8BkTP1woJuRhrP9aukBbiCavFYlPPyD8dYOZ8ci4peJvK0kIeSb1NE22ZyTbBC7VIltEHURkZ5euRSCrIAZstZ3AFzShnKuxhJgpRWmdIDHqPvOowZIecf5J3HRdS4wuGh9Ob6UgHet6OMDZoVNZcaY0oY0UWqGrPa41, libm.so.6(GLIBC_2.0), libm.so.6(GLIBC_2.1), libmd_mpi.so.5 >= set:mfgTAjqcF4B6GDIaXV8o5OZDA6tW5d5KpN5NRxMZqQ3EnzeVZkdwluu04hh72BiSlEmRRq9hlkct9fZ7pPlq8V0VeU8nrxCtVDmDZcHsyR8QCLXkF6LYheDZaIG9JzcQsA1RIjhK8PVMaoeFdVbhN6A1C8RR8IR2Ijj64L2wRd94P5ELNY2dhOJcVBelbs4B53jMPCkHC55v4WWNcWSrtk3BA0JMOLGnN, libmd_mpi_d.so.5 >= set:mfgTAjqcF4B6GDIaXV8o5OZDA6tW5d5KpN5NRxMZqQ3EnzeVZkdwluu04hh72BiSlEmRRq9hlkct9fZ7pPlq8V0VeU8nrxCtVDmDZcHsyR8QCLXkF6LYheDZaIG9JzcQsA1RIjhK8PVMaoeFdVbhN6A1C8RR8IR2Ijj64L2wRd94P5ELNY2dhOJcVBelbs4B53jMPCkHC55v4WWNcWSrtk3BA0JMOLGnN, rtld(GNU_HASH)
Requires(rpmlib): rpmlib(SetVersions)
Finding debuginfo files (using /usr/lib/rpm/find-debuginfo-files)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.FsTAFI
Creating gromacs-mpi-debuginfo package
Processing files: gromacs-common-4.0.7-alt8
Executing(%doc): /bin/sh -e /usr/src/tmp/rpm-tmp.38390
+ umask 022
+ /bin/mkdir -p /usr/src/RPM/BUILD
+ cd /usr/src/RPM/BUILD
+ cd gromacs-4.0.7
+ DOCDIR=/usr/src/tmp/gromacs-buildroot/usr/share/doc/gromacs-common-4.0.7
+ export DOCDIR
+ rm -rf /usr/src/tmp/gromacs-buildroot/usr/share/doc/gromacs-common-4.0.7
+ /bin/mkdir -p /usr/src/tmp/gromacs-buildroot/usr/share/doc/gromacs-common-4.0.7
+ cp -prL AUTHORS COPYING README /usr/src/tmp/gromacs-buildroot/usr/share/doc/gromacs-common-4.0.7
+ chmod -R go-w /usr/src/tmp/gromacs-buildroot/usr/share/doc/gromacs-common-4.0.7
+ chmod -R a+rX /usr/src/tmp/gromacs-buildroot/usr/share/doc/gromacs-common-4.0.7
+ exit 0
Finding Provides (using /usr/lib/rpm/find-provides)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.cFkyx9
find-provides: running scripts (alternatives,debuginfo,gir,lib,pam,perl,pkgconfig,python,shell,typelib)
Finding Requires (using /usr/lib/rpm/find-requires)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.igZ0UZ
find-requires: running scripts (cpp,debuginfo,files,gir-js,gir-python,gir,lib,pam,perl,pkgconfig,pkgconfiglib,python,rpmlib,shebang,shell,static,symlinks,typelib)
Processing files: gromacs-devel-4.0.7-alt8
Finding Provides (using /usr/lib/rpm/find-provides)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.l4iCa6
find-provides: running scripts (alternatives,debuginfo,gir,lib,pam,perl,pkgconfig,python,shell,typelib)
Finding Requires (using /usr/lib/rpm/find-requires)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.0moPWi
find-requires: running scripts (cpp,debuginfo,files,gir-js,gir-python,gir,lib,pam,perl,pkgconfig,pkgconfiglib,python,rpmlib,shebang,shell,static,symlinks,typelib)
/usr/src/tmp/gromacs-buildroot/usr/include/gromacs/statusio.h:45:10: fatal error: sheader.h: No such file or directory
 #include "sheader.h"
          ^~~~~~~~~~~
compilation terminated.
cpp.req: /usr/src/tmp/gromacs-buildroot/usr/include/gromacs/statusio.h: cpp failed, trying c++ mode
/usr/src/tmp/gromacs-buildroot/usr/include/gromacs/statusio.h:45:10: fatal error: sheader.h: No such file or directory
 #include "sheader.h"
          ^~~~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/gromacs-buildroot/usr/include/gromacs/statusio.h: cpp failed
Requires: gromacs-common = 4.0.7-alt8, gromacs-libs = 4.0.7-alt8, /usr/lib/libgmx.so.5.0.0, /usr/lib/libgmx_d.so.5.0.0, /usr/lib/libgmxana.so.5.0.0, /usr/lib/libgmxana_d.so.5.0.0, /usr/lib/libmd.so.5.0.0, /usr/lib/libmd_d.so.5.0.0
Finding debuginfo files (using /usr/lib/rpm/find-debuginfo-files)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.ayUJNX
Processing files: gromacs-mpi-devel-4.0.7-alt8
Finding Provides (using /usr/lib/rpm/find-provides)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.5HfoAY
find-provides: running scripts (alternatives,debuginfo,gir,lib,pam,perl,pkgconfig,python,shell,typelib)
Finding Requires (using /usr/lib/rpm/find-requires)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.kLPEE9
find-requires: running scripts (cpp,debuginfo,files,gir-js,gir-python,gir,lib,pam,perl,pkgconfig,pkgconfiglib,python,rpmlib,shebang,shell,static,symlinks,typelib)
Requires: gromacs-mpi-libs = 4.0.7-alt8, gromacs-devel = 4.0.7-alt8, /usr/lib/libgmx_mpi.so.5.0.0, /usr/lib/libgmx_mpi_d.so.5.0.0, /usr/lib/libgmxana_mpi.so.5.0.0, /usr/lib/libgmxana_mpi_d.so.5.0.0, /usr/lib/libmd_mpi.so.5.0.0, /usr/lib/libmd_mpi_d.so.5.0.0
Finding debuginfo files (using /usr/lib/rpm/find-debuginfo-files)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.sBIlix
Processing files: gromacs-mpi-libs-4.0.7-alt8
Finding Provides (using /usr/lib/rpm/find-provides)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.doviBk
find-provides: running scripts (alternatives,debuginfo,gir,lib,pam,perl,pkgconfig,python,shell,typelib)
lib.prov: /usr/src/tmp/gromacs-buildroot/usr/lib/libgmx_mpi.so.5: 1420 symbols, 21 bpp
lib.prov: /usr/src/tmp/gromacs-buildroot/usr/lib/libgmx_mpi_d.so.5: 1348 symbols, 21 bpp
lib.prov: /usr/src/tmp/gromacs-buildroot/usr/lib/libgmxana_mpi.so.5: 341 symbols, 19 bpp
lib.prov: /usr/src/tmp/gromacs-buildroot/usr/lib/libgmxana_mpi_d.so.5: 341 symbols, 19 bpp
lib.prov: /usr/src/tmp/gromacs-buildroot/usr/lib/libmd_mpi.so.5: 328 symbols, 19 bpp
lib.prov: /usr/src/tmp/gromacs-buildroot/usr/lib/libmd_mpi_d.so.5: 328 symbols, 19 bpp
Finding Requires (using /usr/lib/rpm/find-requires)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.MTThqp
find-requires: running scripts (cpp,debuginfo,files,gir-js,gir-python,gir,lib,pam,perl,pkgconfig,pkgconfiglib,python,rpmlib,shebang,shell,static,symlinks,typelib)
lib.req: WARNING: /usr/src/tmp/gromacs-buildroot/usr/lib/libgmxana_mpi.so.5.0.0: overlinked libraries: /usr/lib/libopenblas.so.0
lib.req: WARNING: /usr/src/tmp/gromacs-buildroot/usr/lib/libgmxana_mpi_d.so.5.0.0: overlinked libraries: /usr/lib/libopenblas.so.0
lib.req: WARNING: /usr/src/tmp/gromacs-buildroot/usr/lib/libgmxana_mpi.so.5: overlinked libraries: /usr/lib/libopenblas.so.0
lib.req: WARNING: /usr/src/tmp/gromacs-buildroot/usr/lib/libgmxana_mpi_d.so.5: overlinked libraries: /usr/lib/libopenblas.so.0
Provides: libgmx_mpi.so.5 = set: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, libgmx_mpi_d.so.5 = set: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, libgmxana_mpi.so.5 = set: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, libgmxana_mpi_d.so.5 = set: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, libmd_mpi.so.5 = set: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, libmd_mpi_d.so.5 = set:mdcMDmiV08Ub4uLzNZbTiwFTNGEGkEnC2uhsKxZ7abKIj0zRWFZ8N0ueYZhbHZIK1IM3lKEZutHUN6hd2LmlLZLzcRgUNki2jCugViZxlhp0TI65hFN5GeEMPWgFfQTGAlXEZvDhj6qxNujhUIk3yTEiDqWR0R2FfvMN6Uz1SdYUgaypB31z5JSE7cKsui64iFuvAJNiqerxNoNwbuk1b6bciK8HSQTlOZoK5KmppMuZe0ghVgrcuEAye24NqrNwZD564ZqasvKo97DZftbr5GeEr70SJUdAn95Pf21Eodb3Cy4DmXM6EJEpnsHxmDuumvrCqndiRGFpDoYy4hGU4USci6IYSIoV3a3p0aKwjhPM7y85JKZfXRCOnJ9QN9NXSvtZ2UqOhW2ecgEuGJ9HjFoq5cyE1UT298SIXbihFVhs6t72lZnbHDel8mDDLvDayRotwikrg6ow3LzceNKZ64Kmm25u3uX5PAZ8JQU2jMbol0auMHg4lPaC4NR9uvwU1mX1lHONFjoKUUGoOYEpsysv6p7K2B5pEcTZkerASXt9lhhgZcFF3V2ZGZBJqjpmFLehZ00vcfbZjabFo6TgPD3yLskrZpWoJzkHCOdFskHRrRdA1I9Zp0Qhe30v9UGU49VA6hvm077qJnZjZ9aki2IMWnxnxsD87
Requires: gromacs-common = 4.0.7-alt8, /usr/lib/openmpi/lib/libmpi.so.20, libc.so.6(GLIBC_2.0), libc.so.6(GLIBC_2.1), libc.so.6(GLIBC_2.1.3), libc.so.6(GLIBC_2.11), libc.so.6(GLIBC_2.2), libc.so.6(GLIBC_2.3), libc.so.6(GLIBC_2.3.4), libc.so.6(GLIBC_2.4), libc.so.6(GLIBC_2.7), libfftw3.so.3 >= set:lhRviZyOH3Z6fGJT03sbjTGvskrJcZc8YJd6Z40NTd1, libfftw3f.so.3 >= set:lhFZpi5UEx4HyjpRfT63zoy92T3kgVbCLRWJcO8HL3, libgsl.so.23 >= set:qmkdQnOro2KmlIXqZDc4OU3MRrrijCppBDL3ZvW6BZbfFFC4rJx1, liblapack.so.4 >= set:omax1kCj8, libm.so.6(GLIBC_2.0), libm.so.6(GLIBC_2.1), libm.so.6(GLIBC_2.27), libopenblas.so.0, libpthread.so.0(GLIBC_2.0), rtld(GNU_HASH)
Requires(rpmlib): rpmlib(SetVersions)
Finding debuginfo files (using /usr/lib/rpm/find-debuginfo-files)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.Lp0lf5
Creating gromacs-mpi-libs-debuginfo package
Processing files: gromacs-shell-extensions-4.0.7-alt8
Executing(%doc): /bin/sh -e /usr/src/tmp/rpm-tmp.23186
+ umask 022
+ /bin/mkdir -p /usr/src/RPM/BUILD
+ cd /usr/src/RPM/BUILD
+ cd gromacs-4.0.7
+ DOCDIR=/usr/src/tmp/gromacs-buildroot/usr/share/doc/gromacs-shell-extensions-4.0.7
+ export DOCDIR
+ rm -rf /usr/src/tmp/gromacs-buildroot/usr/share/doc/gromacs-shell-extensions-4.0.7
+ /bin/mkdir -p /usr/src/tmp/gromacs-buildroot/usr/share/doc/gromacs-shell-extensions-4.0.7
+ cp -prL completion.csh /usr/src/tmp/gromacs-buildroot/usr/share/doc/gromacs-shell-extensions-4.0.7
+ chmod -R go-w /usr/src/tmp/gromacs-buildroot/usr/share/doc/gromacs-shell-extensions-4.0.7
+ chmod -R a+rX /usr/src/tmp/gromacs-buildroot/usr/share/doc/gromacs-shell-extensions-4.0.7
+ exit 0
Finding Provides (using /usr/lib/rpm/find-provides)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.wVXNts
find-provides: running scripts (alternatives,debuginfo,gir,lib,pam,perl,pkgconfig,python,shell,typelib)
Finding Requires (using /usr/lib/rpm/find-requires)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.cbaX06
find-requires: running scripts (cpp,debuginfo,files,gir-js,gir-python,gir,lib,pam,perl,pkgconfig,pkgconfiglib,python,rpmlib,shebang,shell,static,symlinks,typelib)
Obsoletes: gromacs-bash, gromacs-zsh, gromacs-csh
Finding debuginfo files (using /usr/lib/rpm/find-debuginfo-files)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.fNJ0ih
Processing files: gromacs-tutor-4.0.7-alt8
Finding Provides (using /usr/lib/rpm/find-provides)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.292hBC
find-provides: running scripts (alternatives,debuginfo,gir,lib,pam,perl,pkgconfig,python,shell,typelib)
Finding Requires (using /usr/lib/rpm/find-requires)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.A1Doir
find-requires: running scripts (cpp,debuginfo,files,gir-js,gir-python,gir,lib,pam,perl,pkgconfig,pkgconfiglib,python,rpmlib,shebang,shell,static,symlinks,typelib)
Requires: /bin/csh
Processing files: gromacs-doc-4.0.7-alt8
Finding Provides (using /usr/lib/rpm/find-provides)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.LHusgt
find-provides: running scripts (alternatives,debuginfo,gir,lib,pam,perl,pkgconfig,python,shell,typelib)
Finding Requires (using /usr/lib/rpm/find-requires)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.S246mB
find-requires: running scripts (cpp,debuginfo,files,gir-js,gir-python,gir,lib,pam,perl,pkgconfig,pkgconfiglib,python,rpmlib,shebang,shell,static,symlinks,typelib)
Processing files: gromacs-debuginfo-4.0.7-alt8
Finding Provides (using /usr/lib/rpm/find-provides)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.iS9d7a
find-provides: running scripts (debuginfo)
Finding Requires (using /usr/lib/rpm/find-requires)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.iXQqyg
find-requires: running scripts (debuginfo)
Requires: gromacs = 4.0.7-alt8, /usr/lib/debug/lib/ld-linux.so.2.debug, debug(libX11.so.6), debug(libc.so.6), debug(libgmx.so.5), debug(libgmx_d.so.5), debug(libgmx_mpi.so.5), debug(libgmx_mpi_d.so.5), debug(libgsl.so.23), debug(libm.so.6), debug(libmd.so.5), debug(libmd_d.so.5), debug(libmd_mpi.so.5), debug(libmd_mpi_d.so.5), debug(libopenblas.so.0)
Processing files: gromacs-libs-debuginfo-4.0.7-alt8
Finding Provides (using /usr/lib/rpm/find-provides)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.8hn9yk
find-provides: running scripts (debuginfo)
Finding Requires (using /usr/lib/rpm/find-requires)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.Y7EVtA
find-requires: running scripts (debuginfo)
Provides: debug(libgmx.so.5), debug(libgmx_d.so.5), debug(libgmxana.so.5), debug(libgmxana_d.so.5), debug(libmd.so.5), debug(libmd_d.so.5)
Requires: gromacs-libs = 4.0.7-alt8, debug(libc.so.6), debug(libfftw3.so.3), debug(libfftw3f.so.3), debug(libgsl.so.23), debug(liblapack.so.4), debug(libm.so.6), debug(libopenblas.so.0)
Processing files: gromacs-mpi-debuginfo-4.0.7-alt8
Finding Provides (using /usr/lib/rpm/find-provides)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.QzP6je
find-provides: running scripts (debuginfo)
Finding Requires (using /usr/lib/rpm/find-requires)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.lSS0Z3
find-requires: running scripts (debuginfo)
Requires: gromacs-mpi = 4.0.7-alt8, /usr/lib/debug/lib/ld-linux.so.2.debug, /usr/lib/debug/usr/lib/openmpi/lib/libmpi.so.20.debug, debug(libc.so.6), debug(libgmx_mpi.so.5), debug(libgmx_mpi_d.so.5), debug(libm.so.6), debug(libmd_mpi.so.5), debug(libmd_mpi_d.so.5)
Processing files: gromacs-mpi-libs-debuginfo-4.0.7-alt8
Finding Provides (using /usr/lib/rpm/find-provides)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.eYi5d9
find-provides: running scripts (debuginfo)
Finding Requires (using /usr/lib/rpm/find-requires)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.qWNoCx
find-requires: running scripts (debuginfo)
Provides: debug(libgmx_mpi.so.5), debug(libgmx_mpi_d.so.5), debug(libgmxana_mpi.so.5), debug(libgmxana_mpi_d.so.5), debug(libmd_mpi.so.5), debug(libmd_mpi_d.so.5)
Requires: gromacs-mpi-libs = 4.0.7-alt8, /usr/lib/debug/usr/lib/openmpi/lib/libmpi.so.20.debug, debug(libc.so.6), debug(libfftw3.so.3), debug(libfftw3f.so.3), debug(libgsl.so.23), debug(liblapack.so.4), debug(libm.so.6), debug(libopenblas.so.0), debug(libpthread.so.0)
Adding to gromacs a strict dependency on gromacs-libs
Adding to gromacs a strict dependency on gromacs-mpi-libs
Adding to gromacs-mpi a strict dependency on gromacs-mpi-libs
Adding to gromacs-debuginfo a strict dependency on gromacs-libs-debuginfo
Adding to gromacs-debuginfo a strict dependency on gromacs-mpi-libs-debuginfo
Adding to gromacs-mpi-debuginfo a strict dependency on gromacs-mpi-libs-debuginfo
Removing from gromacs-debuginfo 204 sources provided by gromacs-libs-debuginfo
also prunning dir /usr/src/debug/gromacs-4.0.7/include/types
Removing from gromacs-mpi-debuginfo 80 sources provided by gromacs-mpi-libs-debuginfo
also prunning dir /usr/src/debug/gromacs-4.0.7/include/types
Removing 4 extra deps from gromacs due to dependency on gromacs-libs
Removing 4 extra deps from gromacs due to dependency on gromacs-mpi-libs
Removing 6 extra deps from gromacs-devel due to dependency on gromacs-libs
Removing 5 extra deps from gromacs-mpi due to dependency on gromacs-mpi-libs
Removing 6 extra deps from gromacs-mpi-devel due to dependency on gromacs-mpi-libs
Removing 4 extra deps from gromacs-debuginfo due to dependency on gromacs-libs-debuginfo
Removing 4 extra deps from gromacs-debuginfo due to dependency on gromacs-mpi-libs-debuginfo
Removing 4 extra deps from gromacs-mpi-debuginfo due to dependency on gromacs-mpi-libs-debuginfo
Removing 13 extra deps from gromacs due to repentancy on gromacs-libs
Removing 1 extra deps from gromacs-devel due to repentancy on gromacs-libs
Removing 9 extra deps from gromacs-mpi due to repentancy on gromacs-mpi-libs
Removing 4 extra deps from gromacs-debuginfo due to repentancy on gromacs-libs-debuginfo
Removing 3 extra deps from gromacs-mpi-debuginfo due to repentancy on gromacs-mpi-libs-debuginfo
Wrote: /usr/src/RPM/RPMS/i586/gromacs-4.0.7-alt8.i586.rpm
Wrote: /usr/src/RPM/RPMS/i586/gromacs-libs-4.0.7-alt8.i586.rpm
Wrote: /usr/src/RPM/RPMS/i586/gromacs-mpi-4.0.7-alt8.i586.rpm
Wrote: /usr/src/RPM/RPMS/noarch/gromacs-common-4.0.7-alt8.noarch.rpm
Wrote: /usr/src/RPM/RPMS/i586/gromacs-devel-4.0.7-alt8.i586.rpm
Wrote: /usr/src/RPM/RPMS/i586/gromacs-mpi-devel-4.0.7-alt8.i586.rpm
Wrote: /usr/src/RPM/RPMS/i586/gromacs-mpi-libs-4.0.7-alt8.i586.rpm
Wrote: /usr/src/RPM/RPMS/i586/gromacs-shell-extensions-4.0.7-alt8.i586.rpm
Wrote: /usr/src/RPM/RPMS/noarch/gromacs-tutor-4.0.7-alt8.noarch.rpm
Wrote: /usr/src/RPM/RPMS/noarch/gromacs-doc-4.0.7-alt8.noarch.rpm
Wrote: /usr/src/RPM/RPMS/i586/gromacs-debuginfo-4.0.7-alt8.i586.rpm
Wrote: /usr/src/RPM/RPMS/i586/gromacs-libs-debuginfo-4.0.7-alt8.i586.rpm
Wrote: /usr/src/RPM/RPMS/i586/gromacs-mpi-debuginfo-4.0.7-alt8.i586.rpm
Wrote: /usr/src/RPM/RPMS/i586/gromacs-mpi-libs-debuginfo-4.0.7-alt8.i586.rpm
899.89user 223.56system 8:26.87elapsed 221%CPU (0avgtext+0avgdata 76428maxresident)k
0inputs+0outputs (0major+98405225minor)pagefaults 0swaps
915.53user 228.15system 8:55.20elapsed 213%CPU (0avgtext+0avgdata 114028maxresident)k
14976inputs+0outputs (0major+99242558minor)pagefaults 0swaps
--- gromacs-4.0.7-alt8.i586.rpm.repo	2012-08-11 20:29:04.000000000 +0000
+++ gromacs-4.0.7-alt8.i586.rpm.hasher	2019-09-10 11:29:14.640966126 +0000
@@ -354,3 +354,2 @@
 /usr/bin/xrama_mpi_d	100755	
-Requires: gromacs-common = 4.0.7-alt8
 Requires: /lib/ld-linux.so.2  
@@ -358,22 +357,4 @@
 Requires: libX11.so.6 >= set:oiUgZmS1kvNxeWShD68IxxrZhWBJAmK824Jj27NZBiKhya7QJH2a20VekdqAOTaWymJYl3wBk2x1BdP2D3AgbBsEp3LisNUqVJRjZb3QbeyZoGS9M0ZwMaWyM9oEAYyr5ACLNAIN6
-Requires: rpmlib(SetVersions)  
-Requires: libc.so.6(GLIBC_2.0)  
-Requires: libc.so.6(GLIBC_2.1)  
-Requires: libc.so.6(GLIBC_2.3)  
-Requires: libc.so.6(GLIBC_2.3.4)  
-Requires: libc.so.6(GLIBC_2.4)  
-Requires: libc.so.6(GLIBC_2.7)  
-Requires: libgmx.so.5 >= set: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
-Requires: libgmx_d.so.5 >= set: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
-Requires: libgmx_mpi.so.5 >= set: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
-Requires: libgmx_mpi_d.so.5 >= set: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
-Requires: libgsl.so.0 >= set:qmkdQnOro2KmlIXqZDc4OU3MRrrijCppBDL3ZvW6BZbfFFC4rJx1
-Requires: libm.so.6(GLIBC_2.0)  
-Requires: libm.so.6(GLIBC_2.1)  
-Requires: libmd.so.5 >= set:mfgTAjqcF4B6GDIaXV8o5OZDA6tW5d5KpN5NRxMZqQ3EnzeV1Zs7bwD4WCV1g45t8kapnxqlnHPO8ZmaaCKADZrIVadAsws76SEMjrxCtVDmDZcHsyR8QCLXkF6LYDHONNZaIG9JzcQZtqygkPe5VycD3HwVASAL45rg6oyknzMmbMedpgYa8y6SeDgcnwZmcLgjAsbjuzyF9Zys4B53j40QPSkHC55v4WWNcWSrtk3BA0JMOLGnN
-Requires: libmd_d.so.5 >= set:mfgTAjqcF4B6GDIaXV8o5OZDA6tW5d5KpN5NRxMZqQ3EnzeV1Zs7bwD4WCV1g45t8kapnxqlnHPO8ZmaaCKADZrIVadAsws76SEMjrxCtVDmDZcHsyR8QCLXkF6LYDHONNZaIG9JzcQZtqygkPe5VycD3HwVASAL45rg6oyknzMmbMedpgYa8y6SeDgcnwZmcLgjAsbjuzyF9Zys4B53j40QPSkHC55v4WWNcWSrtk3BA0JMOLGnN
-Requires: libmd_mpi.so.5 >= set:mh0sFwfmV9xHPcy2WG2qSrrqPeqT9aqHkGGT5QPahYNXZFQw8z3
-Requires: libmd_mpi_d.so.5 >= set:mh0sFwfmV9xHPcy2WG2qSrrqPeqT9aqHkGGT5QPahYNXZFQw8z3
-Requires: libpthread.so.0(GLIBC_2.0)  
-Requires: rtld(GNU_HASH)  
+Requires: gromacs-libs = 4.0.7-alt8
+Requires: gromacs-mpi-libs = 4.0.7-alt8
 Requires: rpmlib(PayloadIsLzma)  
--- gromacs-common-4.0.7-alt8.noarch.rpm.repo	2012-08-11 20:29:04.000000000 +0000
+++ gromacs-common-4.0.7-alt8.noarch.rpm.hasher	2019-09-10 11:29:14.661966130 +0000
@@ -162,354 +162,354 @@
 /usr/share/gromacs/top/xlateat.dat	100644	
-/usr/share/man/man1/anadock_mpi.1.gz	100644	
-/usr/share/man/man1/anadock_mpi_d.1.gz	100644	
-/usr/share/man/man1/do_dssp_mpi.1.gz	100644	
-/usr/share/man/man1/do_dssp_mpi_d.1.gz	100644	
-/usr/share/man/man1/editconf_mpi.1.gz	100644	
-/usr/share/man/man1/editconf_mpi_d.1.gz	100644	
-/usr/share/man/man1/eneconv_mpi.1.gz	100644	
-/usr/share/man/man1/eneconv_mpi_d.1.gz	100644	
-/usr/share/man/man1/g_anadock.1.gz	100644	
-/usr/share/man/man1/g_anadock_d.1.gz	100644	
-/usr/share/man/man1/g_anaeig.1.gz	100644	
-/usr/share/man/man1/g_anaeig_d.1.gz	100644	
-/usr/share/man/man1/g_anaeig_mpi.1.gz	100644	
-/usr/share/man/man1/g_anaeig_mpi_d.1.gz	100644	
-/usr/share/man/man1/g_analyze.1.gz	100644	
-/usr/share/man/man1/g_analyze_d.1.gz	100644	
-/usr/share/man/man1/g_analyze_mpi.1.gz	100644	
-/usr/share/man/man1/g_analyze_mpi_d.1.gz	100644	
-/usr/share/man/man1/g_angle.1.gz	100644	
-/usr/share/man/man1/g_angle_d.1.gz	100644	
-/usr/share/man/man1/g_angle_mpi.1.gz	100644	
-/usr/share/man/man1/g_angle_mpi_d.1.gz	100644	
-/usr/share/man/man1/g_bond.1.gz	100644	
-/usr/share/man/man1/g_bond_d.1.gz	100644	
-/usr/share/man/man1/g_bond_mpi.1.gz	100644	
-/usr/share/man/man1/g_bond_mpi_d.1.gz	100644	
-/usr/share/man/man1/g_bundle.1.gz	100644	
-/usr/share/man/man1/g_bundle_d.1.gz	100644	
-/usr/share/man/man1/g_bundle_mpi.1.gz	100644	
-/usr/share/man/man1/g_bundle_mpi_d.1.gz	100644	
-/usr/share/man/man1/g_chi.1.gz	100644	
-/usr/share/man/man1/g_chi_d.1.gz	100644	
-/usr/share/man/man1/g_chi_mpi.1.gz	100644	
-/usr/share/man/man1/g_chi_mpi_d.1.gz	100644	
-/usr/share/man/man1/g_cluster.1.gz	100644	
-/usr/share/man/man1/g_cluster_d.1.gz	100644	
-/usr/share/man/man1/g_cluster_mpi.1.gz	100644	
-/usr/share/man/man1/g_cluster_mpi_d.1.gz	100644	
-/usr/share/man/man1/g_clustsize.1.gz	100644	
-/usr/share/man/man1/g_clustsize_d.1.gz	100644	
-/usr/share/man/man1/g_clustsize_mpi.1.gz	100644	
-/usr/share/man/man1/g_clustsize_mpi_d.1.gz	100644	
-/usr/share/man/man1/g_confrms.1.gz	100644	
-/usr/share/man/man1/g_confrms_d.1.gz	100644	
-/usr/share/man/man1/g_confrms_mpi.1.gz	100644	
-/usr/share/man/man1/g_confrms_mpi_d.1.gz	100644	
-/usr/share/man/man1/g_covar.1.gz	100644	
-/usr/share/man/man1/g_covar_d.1.gz	100644	
-/usr/share/man/man1/g_covar_mpi.1.gz	100644	
-/usr/share/man/man1/g_covar_mpi_d.1.gz	100644	
-/usr/share/man/man1/g_current.1.gz	100644	
-/usr/share/man/man1/g_current_d.1.gz	100644	
-/usr/share/man/man1/g_current_mpi.1.gz	100644	
-/usr/share/man/man1/g_current_mpi_d.1.gz	100644	
-/usr/share/man/man1/g_density.1.gz	100644	
-/usr/share/man/man1/g_density_d.1.gz	100644	
-/usr/share/man/man1/g_density_mpi.1.gz	100644	
-/usr/share/man/man1/g_density_mpi_d.1.gz	100644	
-/usr/share/man/man1/g_densmap.1.gz	100644	
-/usr/share/man/man1/g_densmap_d.1.gz	100644	
-/usr/share/man/man1/g_densmap_mpi.1.gz	100644	
-/usr/share/man/man1/g_densmap_mpi_d.1.gz	100644	
-/usr/share/man/man1/g_dielectric.1.gz	100644	
-/usr/share/man/man1/g_dielectric_d.1.gz	100644	
-/usr/share/man/man1/g_dielectric_mpi.1.gz	100644	
-/usr/share/man/man1/g_dielectric_mpi_d.1.gz	100644	
-/usr/share/man/man1/g_dih.1.gz	100644	
-/usr/share/man/man1/g_dih_d.1.gz	100644	
-/usr/share/man/man1/g_dih_mpi.1.gz	100644	
-/usr/share/man/man1/g_dih_mpi_d.1.gz	100644	
-/usr/share/man/man1/g_dipoles.1.gz	100644	
-/usr/share/man/man1/g_dipoles_d.1.gz	100644	
-/usr/share/man/man1/g_dipoles_mpi.1.gz	100644	
-/usr/share/man/man1/g_dipoles_mpi_d.1.gz	100644	
-/usr/share/man/man1/g_disre.1.gz	100644	
-/usr/share/man/man1/g_disre_d.1.gz	100644	
-/usr/share/man/man1/g_disre_mpi.1.gz	100644	
-/usr/share/man/man1/g_disre_mpi_d.1.gz	100644	
-/usr/share/man/man1/g_dist.1.gz	100644	
-/usr/share/man/man1/g_dist_d.1.gz	100644	
-/usr/share/man/man1/g_dist_mpi.1.gz	100644	
-/usr/share/man/man1/g_dist_mpi_d.1.gz	100644	
-/usr/share/man/man1/g_do_dssp.1.gz	100644	
-/usr/share/man/man1/g_do_dssp_d.1.gz	100644	
-/usr/share/man/man1/g_dyndom.1.gz	100644	
-/usr/share/man/man1/g_dyndom_d.1.gz	100644	
-/usr/share/man/man1/g_dyndom_mpi.1.gz	100644	
-/usr/share/man/man1/g_dyndom_mpi_d.1.gz	100644	
-/usr/share/man/man1/g_editconf.1.gz	100644	
-/usr/share/man/man1/g_editconf_d.1.gz	100644	
-/usr/share/man/man1/g_eneconv.1.gz	100644	
-/usr/share/man/man1/g_eneconv_d.1.gz	100644	
-/usr/share/man/man1/g_enemat.1.gz	100644	
-/usr/share/man/man1/g_enemat_d.1.gz	100644	
-/usr/share/man/man1/g_enemat_mpi.1.gz	100644	
-/usr/share/man/man1/g_enemat_mpi_d.1.gz	100644	
-/usr/share/man/man1/g_energy.1.gz	100644	
-/usr/share/man/man1/g_energy_d.1.gz	100644	
-/usr/share/man/man1/g_energy_mpi.1.gz	100644	
-/usr/share/man/man1/g_energy_mpi_d.1.gz	100644	
-/usr/share/man/man1/g_filter.1.gz	100644	
-/usr/share/man/man1/g_filter_d.1.gz	100644	
-/usr/share/man/man1/g_filter_mpi.1.gz	100644	
-/usr/share/man/man1/g_filter_mpi_d.1.gz	100644	
-/usr/share/man/man1/g_genbox.1.gz	100644	
-/usr/share/man/man1/g_genbox_d.1.gz	100644	
-/usr/share/man/man1/g_genconf.1.gz	100644	
-/usr/share/man/man1/g_genconf_d.1.gz	100644	
-/usr/share/man/man1/g_genion.1.gz	100644	
-/usr/share/man/man1/g_genion_d.1.gz	100644	
-/usr/share/man/man1/g_genrestr.1.gz	100644	
-/usr/share/man/man1/g_genrestr_d.1.gz	100644	
-/usr/share/man/man1/g_gmxcheck.1.gz	100644	
-/usr/share/man/man1/g_gmxcheck_d.1.gz	100644	
-/usr/share/man/man1/g_gmxdump.1.gz	100644	
-/usr/share/man/man1/g_gmxdump_d.1.gz	100644	
-/usr/share/man/man1/g_grompp.1.gz	100644	
-/usr/share/man/man1/g_grompp_d.1.gz	100644	
-/usr/share/man/man1/g_gyrate.1.gz	100644	
-/usr/share/man/man1/g_gyrate_d.1.gz	100644	
-/usr/share/man/man1/g_gyrate_mpi.1.gz	100644	
-/usr/share/man/man1/g_gyrate_mpi_d.1.gz	100644	
-/usr/share/man/man1/g_h2order.1.gz	100644	
-/usr/share/man/man1/g_h2order_d.1.gz	100644	
-/usr/share/man/man1/g_h2order_mpi.1.gz	100644	
-/usr/share/man/man1/g_h2order_mpi_d.1.gz	100644	
-/usr/share/man/man1/g_hbond.1.gz	100644	
-/usr/share/man/man1/g_hbond_d.1.gz	100644	
-/usr/share/man/man1/g_hbond_mpi.1.gz	100644	
-/usr/share/man/man1/g_hbond_mpi_d.1.gz	100644	
-/usr/share/man/man1/g_helix.1.gz	100644	
-/usr/share/man/man1/g_helix_d.1.gz	100644	
-/usr/share/man/man1/g_helix_mpi.1.gz	100644	
-/usr/share/man/man1/g_helix_mpi_d.1.gz	100644	
-/usr/share/man/man1/g_helixorient.1.gz	100644	
-/usr/share/man/man1/g_helixorient_d.1.gz	100644	
-/usr/share/man/man1/g_helixorient_mpi.1.gz	100644	
-/usr/share/man/man1/g_helixorient_mpi_d.1.gz	100644	
-/usr/share/man/man1/g_highway.1.gz	100644	
-/usr/share/man/man1/g_highway_d.1.gz	100644	
-/usr/share/man/man1/g_kinetics.1.gz	100644	
-/usr/share/man/man1/g_kinetics_d.1.gz	100644	
-/usr/share/man/man1/g_kinetics_mpi.1.gz	100644	
-/usr/share/man/man1/g_kinetics_mpi_d.1.gz	100644	
-/usr/share/man/man1/g_lie.1.gz	100644	
-/usr/share/man/man1/g_lie_d.1.gz	100644	
-/usr/share/man/man1/g_lie_mpi.1.gz	100644	
-/usr/share/man/man1/g_lie_mpi_d.1.gz	100644	
-/usr/share/man/man1/g_make_edi.1.bz2	100644	
-/usr/share/man/man1/g_make_edi_d.1.bz2	100644	
-/usr/share/man/man1/g_make_ndx.1.gz	100644	
-/usr/share/man/man1/g_make_ndx_d.1.gz	100644	
-/usr/share/man/man1/g_mdmat.1.gz	100644	
-/usr/share/man/man1/g_mdmat_d.1.gz	100644	
-/usr/share/man/man1/g_mdmat_mpi.1.gz	100644	
-/usr/share/man/man1/g_mdmat_mpi_d.1.gz	100644	
-/usr/share/man/man1/g_mdrun.1.bz2	100644	
-/usr/share/man/man1/g_mdrun_d.1.bz2	100644	
-/usr/share/man/man1/g_mindist.1.gz	100644	
-/usr/share/man/man1/g_mindist_d.1.gz	100644	
-/usr/share/man/man1/g_mindist_mpi.1.gz	100644	
-/usr/share/man/man1/g_mindist_mpi_d.1.gz	100644	
-/usr/share/man/man1/g_mk_angndx.1.gz	100644	
-/usr/share/man/man1/g_mk_angndx_d.1.gz	100644	
-/usr/share/man/man1/g_morph.1.gz	100644	
-/usr/share/man/man1/g_morph_d.1.gz	100644	
-/usr/share/man/man1/g_morph_mpi.1.gz	100644	
-/usr/share/man/man1/g_morph_mpi_d.1.gz	100644	
-/usr/share/man/man1/g_msd.1.gz	100644	
-/usr/share/man/man1/g_msd_d.1.gz	100644	
-/usr/share/man/man1/g_msd_mpi.1.gz	100644	
-/usr/share/man/man1/g_msd_mpi_d.1.gz	100644	
-/usr/share/man/man1/g_ngmx.1.gz	100644	
-/usr/share/man/man1/g_ngmx_d.1.gz	100644	
-/usr/share/man/man1/g_nmeig.1.gz	100644	
-/usr/share/man/man1/g_nmeig_d.1.gz	100644	
-/usr/share/man/man1/g_nmeig_mpi.1.gz	100644	
-/usr/share/man/man1/g_nmeig_mpi_d.1.gz	100644	
-/usr/share/man/man1/g_nmens.1.gz	100644	
-/usr/share/man/man1/g_nmens_d.1.gz	100644	
-/usr/share/man/man1/g_nmens_mpi.1.gz	100644	
-/usr/share/man/man1/g_nmens_mpi_d.1.gz	100644	
-/usr/share/man/man1/g_nmtraj.1.gz	100644	
-/usr/share/man/man1/g_nmtraj_d.1.gz	100644	
-/usr/share/man/man1/g_nmtraj_mpi.1.gz	100644	
-/usr/share/man/man1/g_nmtraj_mpi_d.1.gz	100644	
-/usr/share/man/man1/g_order.1.gz	100644	
-/usr/share/man/man1/g_order_d.1.gz	100644	
-/usr/share/man/man1/g_order_mpi.1.gz	100644	
-/usr/share/man/man1/g_order_mpi_d.1.gz	100644	
-/usr/share/man/man1/g_pdb2gmx.1.gz	100644	
-/usr/share/man/man1/g_pdb2gmx_d.1.gz	100644	
-/usr/share/man/man1/g_polystat.1.gz	100644	
-/usr/share/man/man1/g_polystat_d.1.gz	100644	
-/usr/share/man/man1/g_polystat_mpi.1.gz	100644	
-/usr/share/man/man1/g_polystat_mpi_d.1.gz	100644	
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+/usr/share/man/man1/xrama_mpi_d.1.xz	100644	
 Requires: rpmlib(PayloadIsLzma)  
--- gromacs-debuginfo-4.0.7-alt8.i586.rpm.repo	2012-08-11 20:29:04.000000000 +0000
+++ gromacs-debuginfo-4.0.7-alt8.i586.rpm.hasher	2019-09-10 11:29:14.692966136 +0000
@@ -352,31 +352,6 @@
 /usr/src/debug/gromacs-4.0.7/include	40755	
-/usr/src/debug/gromacs-4.0.7/include/3dview.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/atomprop.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/bondf.h	100644	
 /usr/src/debug/gromacs-4.0.7/include/calcgrid.h	100644	
 /usr/src/debug/gromacs-4.0.7/include/calch.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/checkpoint.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/confio.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/constr.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/copyrite.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/coulomb.h	100644	
 /usr/src/debug/gromacs-4.0.7/include/dihre.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/disre.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/do_fit.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/domdec.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/ebin.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/edsam.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/enxio.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/filenm.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/force.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/futil.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/gbutil.h	100644	
 /usr/src/debug/gromacs-4.0.7/include/gmx_ana.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/gmx_arpack.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/gmx_fatal.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/gmx_lapack.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/gmx_random.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/gmx_wallcycle.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/gmxcomplex.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/gmxfio.h	100644	
 /usr/src/debug/gromacs-4.0.7/include/gpp_atomtype.h	100644	
@@ -384,85 +359,2 @@
 /usr/src/debug/gromacs-4.0.7/include/grompp.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/gstat.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/index.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/main.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/maths.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/matio.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/mdatoms.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/mdebin.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/mdrun.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/mshift.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/mtop_util.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/mtxio.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/mvdata.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/names.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/network.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/nrama.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/nrjac.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/nrnb.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/ns.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/orires.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/partdec.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/pbc.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/pdbio.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/perf_est.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/pme.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/pppm.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/princ.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/pull.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/qmmm.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/random.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/rdgroup.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/readinp.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/rmpbc.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/shellfc.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/smalloc.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/sortwater.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/sparsematrix.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/statutil.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/strdb.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/string2.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/symtab.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/tgroup.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/tpxio.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/trnio.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/txtdump.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/typedefs.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/types	40755	
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-/usr/src/debug/gromacs-4.0.7/include/types/block.h	100644	
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-/usr/src/debug/gromacs-4.0.7/include/types/inputrec.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/types/matrix.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/types/mdatom.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/types/nblist.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/types/nrnb.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/types/ns.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/types/nsgrid.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/types/pbc.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/types/qmmmrec.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/types/shellfc.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/types/simple.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/types/state.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/types/symtab.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/types/topology.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/types/trx.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/update.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/vcm.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/vec.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/viewit.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/vsite.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/wgms.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/writeps.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/xtcio.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/xvgr.h	100644	
 /usr/src/debug/gromacs-4.0.7/src	40755	
@@ -595,24 +487,6 @@
 /usr/src/debug/gromacs-4.0.7/src/tools	40755	
-/usr/src/debug/gromacs-4.0.7/src/tools/addconf.c	100644	
-/usr/src/debug/gromacs-4.0.7/src/tools/addconf.h	100644	
-/usr/src/debug/gromacs-4.0.7/src/tools/anadih.c	100644	
 /usr/src/debug/gromacs-4.0.7/src/tools/anadock.c	100644	
-/usr/src/debug/gromacs-4.0.7/src/tools/autocorr.c	100644	
-/usr/src/debug/gromacs-4.0.7/src/tools/calcpot.c	100644	
-/usr/src/debug/gromacs-4.0.7/src/tools/calcpot.h	100644	
-/usr/src/debug/gromacs-4.0.7/src/tools/cmat.c	100644	
-/usr/src/debug/gromacs-4.0.7/src/tools/cmat.h	100644	
-/usr/src/debug/gromacs-4.0.7/src/tools/correl.c	100644	
-/usr/src/debug/gromacs-4.0.7/src/tools/correl.h	100644	
-/usr/src/debug/gromacs-4.0.7/src/tools/dlist.c	100644	
 /usr/src/debug/gromacs-4.0.7/src/tools/do_dssp.c	100644	
 /usr/src/debug/gromacs-4.0.7/src/tools/editconf.c	100644	
-/usr/src/debug/gromacs-4.0.7/src/tools/eigensolver.c	100644	
-/usr/src/debug/gromacs-4.0.7/src/tools/eigensolver.h	100644	
-/usr/src/debug/gromacs-4.0.7/src/tools/eigio.c	100644	
-/usr/src/debug/gromacs-4.0.7/src/tools/eigio.h	100644	
 /usr/src/debug/gromacs-4.0.7/src/tools/eneconv.c	100644	
-/usr/src/debug/gromacs-4.0.7/src/tools/expfit.c	100644	
-/usr/src/debug/gromacs-4.0.7/src/tools/fitahx.c	100644	
-/usr/src/debug/gromacs-4.0.7/src/tools/fitahx.h	100644	
 /usr/src/debug/gromacs-4.0.7/src/tools/g_anaeig.c	100644	
@@ -680,76 +554,2 @@
 /usr/src/debug/gromacs-4.0.7/src/tools/genrestr.c	100644	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_anaeig.c	100644	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_analyze.c	100644	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_angle.c	100644	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_bond.c	100644	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_bundle.c	100644	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_chi.c	100644	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_cluster.c	100644	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_clustsize.c	100644	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_confrms.c	100644	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_covar.c	100644	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_current.c	100644	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_density.c	100644	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_densmap.c	100644	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_dielectric.c	100644	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_dih.c	100644	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_dipoles.c	100644	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_disre.c	100644	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_dist.c	100644	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_dyndom.c	100644	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_editconf.c	100644	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_eneconv.c	100644	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_enemat.c	100644	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_energy.c	100644	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_filter.c	100644	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_genbox.c	100644	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_genconf.c	100644	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_genion.c	100644	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_genpr.c	100644	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_gyrate.c	100644	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_h2order.c	100644	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_hbond.c	100644	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_helix.c	100644	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_helixorient.c	100644	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_kinetics.c	100644	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_lie.c	100644	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_mdmat.c	100644	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_mindist.c	100644	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_morph.c	100644	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_msd.c	100644	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_nmeig.c	100644	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_nmens.c	100644	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_nmtraj.c	100644	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_order.c	100644	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_polystat.c	100644	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_potential.c	100644	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_principal.c	100644	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_rama.c	100644	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_rdf.c	100644	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_rms.c	100644	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_rmsdist.c	100644	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_rmsf.c	100644	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_rotacf.c	100644	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_saltbr.c	100644	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_sas.c	100644	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_sdf.c	100644	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_sgangle.c	100644	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_sham.c	100644	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_sorient.c	100644	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_spatial.c	100644	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_spol.c	100644	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_tcaf.c	100644	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_traj.c	100644	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_trjcat.c	100644	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_trjconv.c	100644	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_trjorder.c	100644	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_vanhove.c	100644	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_velacc.c	100644	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_wham.c	100644	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_wheel.c	100644	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_xpm2ps.c	100644	
-/usr/src/debug/gromacs-4.0.7/src/tools/hxprops.c	100644	
-/usr/src/debug/gromacs-4.0.7/src/tools/hxprops.h	100644	
-/usr/src/debug/gromacs-4.0.7/src/tools/levenmar.c	100644	
-/usr/src/debug/gromacs-4.0.7/src/tools/lsq.c	100644	
 /usr/src/debug/gromacs-4.0.7/src/tools/make_edi.c	100644	
@@ -757,6 +557,2 @@
 /usr/src/debug/gromacs-4.0.7/src/tools/mk_angndx.c	100644	
-/usr/src/debug/gromacs-4.0.7/src/tools/nsc.c	100644	
-/usr/src/debug/gromacs-4.0.7/src/tools/nsc.h	100644	
-/usr/src/debug/gromacs-4.0.7/src/tools/polynomials.c	100644	
-/usr/src/debug/gromacs-4.0.7/src/tools/pp2shift.c	100644	
 /usr/src/debug/gromacs-4.0.7/src/tools/sigeps.c	100644	
@@ -770,14 +566,4 @@
 Requires: debug(libX11.so.6)  
-Requires: debug(libc.so.6)  
-Requires: debug(libgmx.so.5)  
-Requires: debug(libgmx_d.so.5)  
-Requires: debug(libgmx_mpi.so.5)  
-Requires: debug(libgmx_mpi_d.so.5)  
-Requires: debug(libgsl.so.0)  
-Requires: debug(libm.so.6)  
-Requires: debug(libmd.so.5)  
-Requires: debug(libmd_d.so.5)  
-Requires: debug(libmd_mpi.so.5)  
-Requires: debug(libmd_mpi_d.so.5)  
-Requires: debug(libpthread.so.0)  
+Requires: gromacs-libs-debuginfo = 4.0.7-alt8
+Requires: gromacs-mpi-libs-debuginfo = 4.0.7-alt8
 Requires: rpmlib(PayloadIsLzma)  
--- gromacs-libs-4.0.7-alt8.i586.rpm.repo	2012-08-11 20:29:04.000000000 +0000
+++ gromacs-libs-4.0.7-alt8.i586.rpm.hasher	2019-09-10 11:29:14.763966150 +0000
@@ -22,6 +22,6 @@
 Requires: libc.so.6(GLIBC_2.7)  
-Requires: libfftw3.so.3 >= set:njvWohu96CktcRqXhkPvHBAu6qHBD02ZmK8KoqUbFM1OiA0
+Requires: libfftw3.so.3 >= set:lhRviZyOH3Z6fGJT03sbjTGvskrJcZc8YJd6Z40NTd1
 Requires: rpmlib(SetVersions)  
-Requires: libfftw3f.so.3 >= set:njd9yz66TfRRr1P91P6VQRZaA59LbaV5uJsDO2VZmyMt3k0
-Requires: libgsl.so.0 >= set:qmkdQnOro2KmlIXqZDc4OU3MRrrijCppBDL3ZvW6BZbfFFC4rJx1
+Requires: libfftw3f.so.3 >= set:lhFZpi5UEx4HyjpRfT63zoy92T3kgVbCLRWJcO8HL3
+Requires: libgsl.so.23 >= set:qmkdQnOro2KmlIXqZDc4OU3MRrrijCppBDL3ZvW6BZbfFFC4rJx1
 Requires: liblapack.so.4 >= set:omax1kCj8
@@ -29,2 +29,3 @@
 Requires: libm.so.6(GLIBC_2.1)  
+Requires: libm.so.6(GLIBC_2.27)  
 Requires: libopenblas.so.0  
--- gromacs-libs-debuginfo-4.0.7-alt8.i586.rpm.repo	2012-08-11 20:29:04.000000000 +0000
+++ gromacs-libs-debuginfo-4.0.7-alt8.i586.rpm.hasher	2019-09-10 11:29:14.783966154 +0000
@@ -120,2 +120,3 @@
 /usr/src/debug/gromacs-4.0.7/include/invblock.h	100644	
+/usr/src/debug/gromacs-4.0.7/include/macros.h	100644	
 /usr/src/debug/gromacs-4.0.7/include/main.h	100644	
@@ -873,3 +874,3 @@
 Requires: debug(libfftw3f.so.3)  
-Requires: debug(libgsl.so.0)  
+Requires: debug(libgsl.so.23)  
 Requires: debug(liblapack.so.4)  
--- gromacs-mpi-4.0.7-alt8.i586.rpm.repo	2012-08-11 20:29:04.000000000 +0000
+++ gromacs-mpi-4.0.7-alt8.i586.rpm.hasher	2019-09-10 11:29:14.799966157 +0000
@@ -2,17 +2,4 @@
 /usr/bin/g_mdrun_mpi_d	100755	
-Requires: gromacs-common = 4.0.7-alt8
 Requires: /lib/ld-linux.so.2  
-Requires: /usr/lib/openmpi/lib/libmpi.so.1  
-Requires: libc.so.6(GLIBC_2.0)  
-Requires: libc.so.6(GLIBC_2.3.4)  
-Requires: libc.so.6(GLIBC_2.4)  
-Requires: libc.so.6(GLIBC_2.7)  
-Requires: libgmx_mpi.so.5 >= set:ohsOuTxkT4szlByhH3u8hMrApZdcEQbY868b0rYTQgUD0CvRIj4cHGGLm8BkTP1woJuRhrP9aukBHR8OngUbBLqumY4FxnK7pA8OsqZI5wyRNu986lgUnKnadfOpHWgnNHFWb7LqrPdmivKHv8j7JzKsZ2cG5aHmTGxZclJVfpcMvSxVFEtoJKNC0QjdahuN07q5ZtUWzVNZcaY0oY0UWqGrPa41
-Requires: rpmlib(SetVersions)  
-Requires: libgmx_mpi_d.so.5 >= set:ohsOuTxkT4szlByhH3u8hMrApZdcEQbY868b0rYTQgUD0CvRIj4cHGGLm8BkTP1woJuRhrP9aukBbiCavFYlPPyD8dYOZ8ci4peJvK0kIeSb1NE22ZyTbBC7VIltEHURkZ5euRSCrIAZstZ3AFzShnKuxhJgpRWmdIDHqPvOowZIecf5J3HRdS4wuGh9Ob6UgHet6OMDZoVNZcaY0oY0UWqGrPa41
-Requires: libm.so.6(GLIBC_2.0)  
-Requires: libm.so.6(GLIBC_2.1)  
-Requires: libmd_mpi.so.5 >= set:mfgTAjqcF4B6GDIaXV8o5OZDA6tW5d5KpN5NRxMZqQ3EnzeVZkdwluu04hh72BiSlEmRRq9hlkct9fZ7pPlq8V0VeU8nrxCtVDmDZcHsyR8QCLXkF6LYheDZaIG9JzcQsA1RIjhK8PVMaoeFdVbhN6A1C8RR8IR2Ijj64L2wRd94P5ELNY2dhOJcVBelbs4B53jMPCkHC55v4WWNcWSrtk3BA0JMOLGnN
-Requires: libmd_mpi_d.so.5 >= set:mfgTAjqcF4B6GDIaXV8o5OZDA6tW5d5KpN5NRxMZqQ3EnzeVZkdwluu04hh72BiSlEmRRq9hlkct9fZ7pPlq8V0VeU8nrxCtVDmDZcHsyR8QCLXkF6LYheDZaIG9JzcQsA1RIjhK8PVMaoeFdVbhN6A1C8RR8IR2Ijj64L2wRd94P5ELNY2dhOJcVBelbs4B53jMPCkHC55v4WWNcWSrtk3BA0JMOLGnN
-Requires: rtld(GNU_HASH)  
+Requires: gromacs-mpi-libs = 4.0.7-alt8
 Requires: rpmlib(PayloadIsLzma)  
--- gromacs-mpi-debuginfo-4.0.7-alt8.i586.rpm.repo	2012-08-11 20:29:04.000000000 +0000
+++ gromacs-mpi-debuginfo-4.0.7-alt8.i586.rpm.hasher	2019-09-10 11:29:14.840966165 +0000
@@ -4,83 +4,3 @@
 /usr/src/debug/gromacs-4.0.7/include	40755	
-/usr/src/debug/gromacs-4.0.7/include/checkpoint.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/confio.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/constr.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/copyrite.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/coulomb.h	100644	
 /usr/src/debug/gromacs-4.0.7/include/dihre.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/disre.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/domdec.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/ebin.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/edsam.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/enxio.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/filenm.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/force.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/futil.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/gmx_fatal.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/gmx_random.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/gmx_wallcycle.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/gmxcomplex.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/gmxfio.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/main.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/mdatoms.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/mdebin.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/mdrun.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/mshift.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/mtop_util.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/mvdata.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/names.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/network.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/ns.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/orires.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/partdec.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/pbc.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/pme.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/pppm.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/pull.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/qmmm.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/random.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/readinp.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/shellfc.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/smalloc.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/statutil.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/strdb.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/string2.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/tgroup.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/trnio.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/txtdump.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/typedefs.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/types	40755	
-/usr/src/debug/gromacs-4.0.7/include/types/atoms.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/types/block.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/types/commrec.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/types/constr.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/types/energy.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/types/enums.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/types/fcdata.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/types/filenm.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/types/forcerec.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/types/graph.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/types/group.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/types/idef.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/types/ifunc.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/types/inputrec.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/types/mdatom.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/types/nblist.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/types/nrnb.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/types/ns.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/types/nsgrid.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/types/pbc.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/types/qmmmrec.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/types/shellfc.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/types/simple.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/types/state.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/types/symtab.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/types/topology.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/types/trx.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/update.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/vcm.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/vec.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/vsite.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/xtcio.h	100644	
-/usr/src/debug/gromacs-4.0.7/include/xvgr.h	100644	
 /usr/src/debug/gromacs-4.0.7/src	40755	
@@ -104,9 +24,3 @@
 Requires: /usr/lib/debug/lib/ld-linux.so.2.debug  
-Requires: /usr/lib/debug/usr/lib/openmpi/lib/libmpi.so.1.debug  
-Requires: debug(libc.so.6)  
-Requires: debug(libgmx_mpi.so.5)  
-Requires: debug(libgmx_mpi_d.so.5)  
-Requires: debug(libm.so.6)  
-Requires: debug(libmd_mpi.so.5)  
-Requires: debug(libmd_mpi_d.so.5)  
+Requires: gromacs-mpi-libs-debuginfo = 4.0.7-alt8
 Requires: rpmlib(PayloadIsLzma)  
--- gromacs-mpi-libs-4.0.7-alt8.i586.rpm.repo	2012-08-11 20:29:04.000000000 +0000
+++ gromacs-mpi-libs-4.0.7-alt8.i586.rpm.hasher	2019-09-10 11:29:14.874966171 +0000
@@ -15,3 +15,3 @@
 Requires: gromacs-common = 4.0.7-alt8
-Requires: /usr/lib/openmpi/lib/libmpi.so.1  
+Requires: /usr/lib/openmpi/lib/libmpi.so.20  
 Requires: libc.so.6(GLIBC_2.0)  
@@ -25,6 +25,6 @@
 Requires: libc.so.6(GLIBC_2.7)  
-Requires: libfftw3.so.3 >= set:njvWohu96CktcRqXhkPvHBAu6qHBD02ZmK8KoqUbFM1OiA0
+Requires: libfftw3.so.3 >= set:lhRviZyOH3Z6fGJT03sbjTGvskrJcZc8YJd6Z40NTd1
 Requires: rpmlib(SetVersions)  
-Requires: libfftw3f.so.3 >= set:njd9yz66TfRRr1P91P6VQRZaA59LbaV5uJsDO2VZmyMt3k0
-Requires: libgsl.so.0 >= set:qmkdQnOro2KmlIXqZDc4OU3MRrrijCppBDL3ZvW6BZbfFFC4rJx1
+Requires: libfftw3f.so.3 >= set:lhFZpi5UEx4HyjpRfT63zoy92T3kgVbCLRWJcO8HL3
+Requires: libgsl.so.23 >= set:qmkdQnOro2KmlIXqZDc4OU3MRrrijCppBDL3ZvW6BZbfFFC4rJx1
 Requires: liblapack.so.4 >= set:omax1kCj8
@@ -32,2 +32,3 @@
 Requires: libm.so.6(GLIBC_2.1)  
+Requires: libm.so.6(GLIBC_2.27)  
 Requires: libopenblas.so.0  
--- gromacs-mpi-libs-debuginfo-4.0.7-alt8.i586.rpm.repo	2012-08-11 20:29:04.000000000 +0000
+++ gromacs-mpi-libs-debuginfo-4.0.7-alt8.i586.rpm.hasher	2019-09-10 11:29:14.892966175 +0000
@@ -51,2 +51,3 @@
 /usr/src/debug/gromacs-4.0.7/include/invblock.h	100644	
+/usr/src/debug/gromacs-4.0.7/include/macros.h	100644	
 /usr/src/debug/gromacs-4.0.7/include/main.h	100644	
@@ -873,3 +874,3 @@
 Requires: gromacs-mpi-libs = 4.0.7-alt8
-Requires: /usr/lib/debug/usr/lib/openmpi/lib/libmpi.so.1.debug  
+Requires: /usr/lib/debug/usr/lib/openmpi/lib/libmpi.so.20.debug  
 Requires: debug(libc.so.6)  
@@ -877,3 +878,3 @@
 Requires: debug(libfftw3f.so.3)  
-Requires: debug(libgsl.so.0)  
+Requires: debug(libgsl.so.23)  
 Requires: debug(liblapack.so.4)