<86>Nov 9 10:27:37 userdel[56504]: delete user 'rooter' <86>Nov 9 10:27:37 groupadd[56526]: group added to /etc/group: name=rooter, GID=546 <86>Nov 9 10:27:37 groupadd[56526]: group added to /etc/gshadow: name=rooter <86>Nov 9 10:27:37 groupadd[56526]: new group: name=rooter, GID=546 <86>Nov 9 10:27:37 useradd[56616]: new user: name=rooter, UID=546, GID=546, home=/root, shell=/bin/bash <86>Nov 9 10:27:37 userdel[56656]: delete user 'builder' <86>Nov 9 10:27:37 groupadd[56680]: group added to /etc/group: name=builder, GID=547 <86>Nov 9 10:27:37 groupadd[56680]: group added to /etc/gshadow: name=builder <86>Nov 9 10:27:37 groupadd[56680]: new group: name=builder, GID=547 <86>Nov 9 10:27:37 useradd[56764]: new user: name=builder, UID=547, GID=547, home=/usr/src, shell=/bin/bash <13>Nov 9 10:27:52 rpmi: libexpat-2.2.4-alt1 1503305345 installed <13>Nov 9 10:27:52 rpmi: libglvnd-7:1.1.0-alt3 sisyphus.215982.100 1541498632 installed <13>Nov 9 10:27:52 rpmi: xorg-proto-devel-2018.4-alt3 1527685079 installed <13>Nov 9 10:27:52 rpmi: libtcl-8.6.8-alt1 1518663643 installed <13>Nov 9 10:27:52 rpmi: tcl-8.6.8-alt1 1518663643 installed <13>Nov 9 10:27:52 rpmi: python-module-sphinxcontrib-2.1.1-alt2.1.2 1526455698 installed <13>Nov 9 10:27:52 rpmi: libnumpy-1:1.13.3-alt2.2.qa1 sisyphus.214885.100 1539806695 installed <13>Nov 9 10:27:52 rpmi: zlib-devel-1.2.8-alt1 1371079011 installed <13>Nov 9 10:27:52 rpmi: libopenblas-0.2.20-alt1 1527005646 installed <13>Nov 9 10:27:52 rpmi: libpng16-1.6.35-alt1 sisyphus.214397.100 1539159349 installed <13>Nov 9 10:27:52 rpmi: libgraphite2-1.3.12-alt2.1 sisyphus.215942.100 1540990757 installed <13>Nov 9 10:27:52 rpmi: libharfbuzz-2.0.2-alt1 sisyphus.215425.100 1540400162 installed <13>Nov 9 10:27:52 rpmi: libfreetype-2.9.1-alt1.S1 1530781053 installed <13>Nov 9 10:27:53 rpmi: fontconfig-2.13.1-alt1 sisyphus.215917.100 1540973886 installed Updating fonts cache: [ DONE ] <29>Nov 9 10:27:54 fontconfig: Updating fonts cache: succeeded <13>Nov 9 10:27:54 rpmi: libwayland-server-1.16.0-alt1 1535614871 installed <13>Nov 9 10:27:55 rpmi: libicu63-1:6.3.1-alt1 sisyphus.215328.100 1540049988 installed <13>Nov 9 10:27:55 rpmi: libgdbm-1.8.3-alt10 1454943334 installed <13>Nov 9 10:27:55 rpmi: icu-utils-1:6.3.1-alt1 sisyphus.215328.100 1540049988 installed <13>Nov 9 10:27:55 rpmi: libicu-devel-1:6.3.1-alt1 sisyphus.215328.100 1540049988 installed <13>Nov 9 10:27:55 rpmi: libharfbuzz-icu-2.0.2-alt1 sisyphus.215425.100 1540400162 installed <13>Nov 9 10:27:55 rpmi: libgraphite2-devel-1.3.12-alt2.1 sisyphus.215942.100 1540990757 installed <13>Nov 9 10:27:55 rpmi: libOpenGL-7:1.1.0-alt3 sisyphus.215982.100 1541498632 installed <13>Nov 9 10:27:55 rpmi: libGLES-7:1.1.0-alt3 sisyphus.215982.100 1541498632 installed <13>Nov 9 10:27:55 rpmi: rpm-build-tcl-0.5.1-alt1 1519671307 installed <13>Nov 9 10:27:55 rpmi: tcl-devel-8.6.8-alt1 1518663643 installed <13>Nov 9 10:27:55 rpmi: python-module-OpenGL_accelerate-3.1.1a1-alt1.S1.1 1525138250 installed <13>Nov 9 10:27:55 rpmi: python-module-imagesize-0.7.1-alt1 1461387704 installed <13>Nov 9 10:27:55 rpmi: python-sphinx-objects.inv-1:2.3.8.20181107-alt1 sisyphus.216236.100 1541639425 installed <13>Nov 9 10:27:55 rpmi: libxapian-1.4.5-alt3 sisyphus.215025.100 1539610704 installed <13>Nov 9 10:27:55 rpmi: python-module-google-0.4.2-alt2.1 1517733343 installed <13>Nov 9 10:27:56 rpmi: libsqlite3-3.25.2-alt2 sisyphus.215082.100 1539700318 installed <13>Nov 9 10:27:56 rpmi: python-module-enum34-1.1.6-alt3 1527251693 installed <13>Nov 9 10:27:56 rpmi: libmsgpack-3.1.1-alt1 sisyphus.214704.100 1539462324 installed <13>Nov 9 10:27:56 rpmi: libxblas-1.0.248-alt1.1 1496143682 installed <13>Nov 9 10:27:56 rpmi: libquadmath0-7.3.1-alt5 1531512767 installed <13>Nov 9 10:27:56 rpmi: libgfortran4-7.3.1-alt5 1531512767 installed <13>Nov 9 10:27:56 rpmi: liblapack-1:3.8.0-alt1 1527158339 installed <13>Nov 9 10:27:56 rpmi: libgpg-error-1.31-alt1.S1 1529015802 installed <13>Nov 9 10:27:56 rpmi: libgcrypt20-1.8.3-alt3 sisyphus.214019.140 1538990448 installed <13>Nov 9 10:27:56 rpmi: libxslt-1.1.32-alt2 1517429984 installed <13>Nov 9 10:27:56 rpmi: libxshmfence-1.2-alt2 1518613552 installed <13>Nov 9 10:27:56 rpmi: libX11-locales-3:1.6.7-alt1 sisyphus.214413.200 1539171080 installed <13>Nov 9 10:27:56 rpmi: libXdmcp-1.1.1-alt1 1334617701 installed <13>Nov 9 10:27:56 rpmi: libXau-1.0.8-alt1 1369565808 installed <13>Nov 9 10:27:56 rpmi: libxcb-1.13.1-alt1 sisyphus.214413.100 1539170896 installed <13>Nov 9 10:27:56 rpmi: libX11-3:1.6.7-alt1 sisyphus.214413.200 1539171143 installed <13>Nov 9 10:27:56 rpmi: libXext-1.3.3-alt1 1409902959 installed <13>Nov 9 10:27:56 rpmi: libXxf86vm-1.1.4-alt2 1527672187 installed <13>Nov 9 10:27:56 rpmi: libXrender-0.9.8-alt1 1371312112 installed <13>Nov 9 10:27:56 rpmi: libXft-2.3.2-alt1 1409902660 installed <13>Nov 9 10:27:56 rpmi: libtk-8.6.8-alt1 1518663864 installed <13>Nov 9 10:27:56 rpmi: tk-8.6.8-alt1 1518663864 installed <13>Nov 9 10:27:56 rpmi: libXrandr-1.5.0-alt1 1431936189 installed <13>Nov 9 10:27:56 rpmi: libXi-1.7.9-alt1.S1 1515755342 installed <13>Nov 9 10:27:56 rpmi: libXdamage-1.1.3-alt4 1297162593 installed <13>Nov 9 10:27:57 rpmi: libXfixes-5.0.1-alt1 1369809608 installed <13>Nov 9 10:27:58 rpmi: libxcb-devel-1.13.1-alt1 sisyphus.214413.100 1539170896 installed <13>Nov 9 10:27:58 rpmi: libX11-devel-3:1.6.7-alt1 sisyphus.214413.200 1539171143 installed <13>Nov 9 10:27:58 rpmi: libwayland-client-1.16.0-alt1 1535614871 installed <13>Nov 9 10:27:58 rpmi: libpciaccess-1:0.14-alt1 1528969252 installed <13>Nov 9 10:27:58 rpmi: libdrm-1:2.4.96-alt1 sisyphus.215486.100 1540374027 installed <13>Nov 9 10:27:58 rpmi: libGLX-mesa-4:18.2.4-alt1 sisyphus.215982.200 1541499328 installed <13>Nov 9 10:27:58 rpmi: libGLX-7:1.1.0-alt3 sisyphus.215982.100 1541498632 installed <13>Nov 9 10:27:58 rpmi: libGL-7:1.1.0-alt3 sisyphus.215982.100 1541498632 installed <13>Nov 9 10:27:58 rpmi: libGLU-4:9.0.0-alt1 1347643784 installed <13>Nov 9 10:27:58 rpmi: libGLEW2.1-2.1.0-alt2.S1 1501869756 installed <13>Nov 9 10:27:58 rpmi: libfreeglut-3.0.0-alt3 sisyphus.215254.100 1540853076 installed <13>Nov 9 10:27:58 rpmi: libgbm-4:18.2.4-alt1 sisyphus.215982.200 1541499328 installed <13>Nov 9 10:27:58 rpmi: libEGL-mesa-4:18.2.4-alt1 sisyphus.215982.200 1541499328 installed <13>Nov 9 10:27:59 rpmi: libEGL-7:1.1.0-alt3 sisyphus.215982.100 1541498632 installed <13>Nov 9 10:27:59 rpmi: libglvnd-devel-7:1.1.0-alt3 sisyphus.215982.100 1541498632 installed <13>Nov 9 10:27:59 rpmi: libGL-devel-4:18.2.4-alt1 sisyphus.215982.200 1541499328 installed <13>Nov 9 10:27:59 rpmi: libGLU-devel-4:9.0.0-alt1 1347643784 installed <13>Nov 9 10:27:59 rpmi: xml-utils-1:2.9.4.0.12.e905-alt1.1 1525115767 installed <13>Nov 9 10:27:59 rpmi: rpm-build-gir-0.7.2-alt4 1534675014 installed <13>Nov 9 10:27:59 rpmi: gcc-c++-common-1.4.22-alt1 1519183788 installed <13>Nov 9 10:27:59 rpmi: libstdc++7-devel-7.3.1-alt5 1531512767 installed <13>Nov 9 10:28:00 rpmi: gcc7-c++-7.3.1-alt5 1531512767 installed <13>Nov 9 10:28:00 rpmi: libtinfo-devel-6.1.20180407-alt2 sisyphus.215627.200 1540831974 installed <13>Nov 9 10:28:00 rpmi: libncurses-devel-6.1.20180407-alt2 sisyphus.215627.200 1540831974 installed <13>Nov 9 10:28:00 rpmi: python-modules-curses-2.7.14-alt7.1 sisyphus.212296.100 1535808823 installed <13>Nov 9 10:28:00 rpmi: libverto-0.3.0-alt1_5 1525957714 installed <13>Nov 9 10:28:00 rpmi: libkeyutils-1.5.10-alt1 1489994063 installed <13>Nov 9 10:28:00 rpmi: libcom_err-1.44.3-alt1 1532134732 installed <13>Nov 9 10:28:00 rpmi: libtasn1-4.13-alt2 1521133850 installed <13>Nov 9 10:28:00 rpmi: rpm-macros-alternatives-0.4.5-alt1.1 1404382149 installed <13>Nov 9 10:28:00 rpmi: alternatives-0.4.5-alt1.1 1404382149 installed <13>Nov 9 10:28:00 rpmi: libp11-kit-0.23.9-alt5 1525798298 installed <13>Nov 9 10:28:00 rpmi: ca-certificates-2018.09.09-alt1 sisyphus.212781.100 1536518628 installed <13>Nov 9 10:28:00 rpmi: ca-trust-0.1.1-alt2 1515595785 installed <13>Nov 9 10:28:00 rpmi: p11-kit-trust-0.23.9-alt5 1525798298 installed <13>Nov 9 10:28:00 rpmi: libcrypto1.1-1.1.0i-alt1 1535471315 installed <13>Nov 9 10:28:00 rpmi: libssl1.1-1.1.0i-alt1 1535471315 installed <13>Nov 9 10:28:00 rpmi: libpython3-3.6.5-alt1.1 1535734576 installed <13>Nov 9 10:28:00 rpmi: rpm-build-python3-0.1.13.1-alt2 1535450458 installed <13>Nov 9 10:28:00 rpmi: tests-for-installed-python3-pkgs-0.1.13.1-alt2 1535450458 installed <13>Nov 9 10:28:00 rpmi: python3-3.6.5-alt1.1 1535734576 installed <13>Nov 9 10:28:01 rpmi: python3-base-3.6.5-alt1.1 1535734576 installed <13>Nov 9 10:28:01 rpmi: glib2-devel-2.58.1-alt3 sisyphus.214034.100 1538601697 installed <13>Nov 9 10:28:01 rpmi: libharfbuzz-devel-2.0.2-alt1 sisyphus.215425.100 1540400162 installed <86>Nov 9 10:28:01 groupadd[129008]: group added to /etc/group: name=_keytab, GID=499 <86>Nov 9 10:28:01 groupadd[129008]: group added to /etc/gshadow: name=_keytab <86>Nov 9 10:28:01 groupadd[129008]: new group: name=_keytab, GID=499 <13>Nov 9 10:28:01 rpmi: libkrb5-1.16.2-alt1 sisyphus.216047.100 1541159177 installed <13>Nov 9 10:28:01 rpmi: libtirpc-1.0.3-alt1 1532008017 installed <13>Nov 9 10:28:01 rpmi: libnsl2-1.1.0-alt1_1 1511548749 installed <13>Nov 9 10:28:01 rpmi: python-modules-compiler-2.7.14-alt7.1 sisyphus.212296.100 1535808823 installed <13>Nov 9 10:28:01 rpmi: python-modules-email-2.7.14-alt7.1 sisyphus.212296.100 1535808823 installed <13>Nov 9 10:28:01 rpmi: python-modules-unittest-2.7.14-alt7.1 sisyphus.212296.100 1535808823 installed <13>Nov 9 10:28:01 rpmi: python-modules-nis-2.7.14-alt7.1 sisyphus.212296.100 1535808823 installed <13>Nov 9 10:28:01 rpmi: python-modules-encodings-2.7.14-alt7.1 sisyphus.212296.100 1535808823 installed <13>Nov 9 10:28:01 rpmi: python-modules-2.7.14-alt7.1 sisyphus.212296.100 1535808823 installed <13>Nov 9 10:28:01 rpmi: python-module-six-1.11.0-alt2 1535611135 installed <13>Nov 9 10:28:01 rpmi: python-modules-ctypes-2.7.14-alt7.1 sisyphus.212296.100 1535808823 installed <13>Nov 9 10:28:01 rpmi: python-module-pkg_resources-1:40.5.0-alt1 sisyphus.216029.100 1541106477 installed <13>Nov 9 10:28:01 rpmi: python-modules-json-2.7.14-alt7.1 sisyphus.212296.100 1535808823 installed <13>Nov 9 10:28:01 rpmi: python-modules-xml-2.7.14-alt7.1 sisyphus.212296.100 1535808823 installed <13>Nov 9 10:28:01 rpmi: python-modules-multiprocessing-2.7.14-alt7.1 sisyphus.212296.100 1535808823 installed <13>Nov 9 10:28:01 rpmi: python-modules-logging-2.7.14-alt7.1 sisyphus.212296.100 1535808823 installed <13>Nov 9 10:28:01 rpmi: python-modules-hotshot-2.7.14-alt7.1 sisyphus.212296.100 1535808823 installed <13>Nov 9 10:28:01 rpmi: python-module-chardet-3.0.4-alt1 1506613818 installed <13>Nov 9 10:28:01 rpmi: python-tools-2to3-2.7.14-alt7.1 sisyphus.212296.100 1535808823 installed <13>Nov 9 10:28:02 rpmi: python-module-whoosh-2.7.4-alt1 1527697941 installed <13>Nov 9 10:28:02 rpmi: python-module-webencodings-0.5.1-alt1.1 1517943573 installed <13>Nov 9 10:28:02 rpmi: python-module-more-itertools-4.3.0-alt1 1533048475 installed <13>Nov 9 10:28:02 rpmi: python-modules-bsddb-2.7.14-alt7.1 sisyphus.212296.100 1535808823 installed <13>Nov 9 10:28:02 rpmi: python-2.7.14-alt7.1 sisyphus.212296.100 1535808823 installed <13>Nov 9 10:28:02 rpmi: python-strict-2.7.14-alt7.1 sisyphus.212296.100 1535808793 installed <13>Nov 9 10:28:02 rpmi: python-modules-distutils-2.7.14-alt7.1 sisyphus.212296.100 1535808823 installed <13>Nov 9 10:28:02 rpmi: python-module-numpy-1:1.13.3-alt2.2.qa1 sisyphus.214885.100 1539806695 installed <13>Nov 9 10:28:02 rpmi: python-module-numpy-testing-1:1.13.3-alt2.2.qa1 sisyphus.214885.100 1539806695 installed <13>Nov 9 10:28:02 rpmi: python-module-idna-2.7-alt1 1530720902 installed <13>Nov 9 10:28:02 rpmi: python-module-cssselect-0.9.1-alt1.2 1526980827 installed <13>Nov 9 10:28:02 rpmi: python-module-html5lib-1:0.999999999-alt4.qa1 sisyphus.214868.100 1539741045 installed <13>Nov 9 10:28:02 rpmi: python-module-lxml-4.2.1-alt1.1 1525119302 installed <13>Nov 9 10:28:02 rpmi: python-module-docutils-0.14-alt2 1535729778 installed <13>Nov 9 10:28:02 rpmi: python-module-pycparser-2.19-alt1 sisyphus.216095.100 1541345023 installed <13>Nov 9 10:28:02 rpmi: python-module-cffi-1.10.0-alt1.1 1525117736 installed <13>Nov 9 10:28:02 rpmi: python-module-asn1crypto-0.24.0-alt1 1521037480 installed <13>Nov 9 10:28:02 rpmi: python-module-ntlm-1.1.0-alt1.1.1.1 1460405346 installed <13>Nov 9 10:28:03 rpmi: python-module-pytz-1:2016.10-alt1 1484291011 installed <13>Nov 9 10:28:03 rpmi: python-module-babel-1:2.4.0-alt1.1 1517644530 installed <13>Nov 9 10:28:03 rpmi: python-module-attrs-18.2.0-alt1 sisyphus.214354.100 1539088435 installed <13>Nov 9 10:28:03 rpmi: python-module-PyStemmer-1.0.1-alt1.2.1 1321388303 installed <13>Nov 9 10:28:03 rpmi: python-module-snowballstemmer-1.2.0-alt2.1 1457859319 installed <13>Nov 9 10:28:03 rpmi: python-module-markupsafe-0.23-alt1.2.1.1 1525118834 installed <13>Nov 9 10:28:03 rpmi: python-module-jinja2-2.10-alt1 1521724576 installed <13>Nov 9 10:28:03 rpmi: python-module-simplejson-3.15.0-alt1.qa1 sisyphus.214917.100 1539845528 installed <13>Nov 9 10:28:03 rpmi: python-module-ndg-0.4.2-alt1.qa1 1531457735 installed <13>Nov 9 10:28:03 rpmi: python-module-ipaddress-1.0.18-alt1.1 1517713372 installed <13>Nov 9 10:28:03 rpmi: python-module-cryptography-2.3.0-alt1.1 sisyphus.212297.100 1535813262 installed <13>Nov 9 10:28:03 rpmi: python-module-OpenSSL-18.0.0-alt1 1532996168 installed <13>Nov 9 10:28:03 rpmi: python-module-ndg-httpsclient-0.4.2-alt1.qa1 1531457735 installed <13>Nov 9 10:28:03 rpmi: python-module-backports-3.5.0.1-alt1.1.1 1517645428 installed <13>Nov 9 10:28:03 rpmi: python-module-urllib3-2:1.21.1-alt1 1506613994 installed <13>Nov 9 10:28:03 rpmi: python-module-requests-2.19.1-alt1 1530831197 installed <13>Nov 9 10:28:03 rpmi: python-module-typing-3.6.4-alt1 1517577671 installed <13>Nov 9 10:28:03 rpmi: python-modules-sqlite3-2.7.14-alt7.1 sisyphus.212296.100 1535808823 installed <13>Nov 9 10:28:03 rpmi: python-module-SQLAlchemy-1.0.12-alt1.1 1525119509 installed <13>Nov 9 10:28:03 rpmi: python-module-py-1.7.0-alt1 sisyphus.214414.220 1539670883 installed <13>Nov 9 10:28:03 rpmi: python-module-funcsigs-1.0.2-alt1.1 1517699355 installed <13>Nov 9 10:28:03 rpmi: python-module-scandir-1.9.0-alt1 1535455370 installed <13>Nov 9 10:28:03 rpmi: python-module-pathlib2-2.3.2-alt1 1535455443 installed <13>Nov 9 10:28:03 rpmi: python-module-atomicwrites-1.2.1-alt1 sisyphus.214347.100 1539076636 installed <13>Nov 9 10:28:03 rpmi: python-module-xapian-1.4.5-alt2.qa1 1531484078 installed <13>Nov 9 10:28:03 rpmi: python-module-pluggy-0.8.0-alt1 sisyphus.215346.100 1540073015 installed <13>Nov 9 10:28:03 rpmi: python-module-pytest-3.9.3-alt1 sisyphus.215666.100 1540687418 installed <13>Nov 9 10:28:03 rpmi: python-module-alabaster-0.7.6-alt3 1526385201 installed <13>Nov 9 10:28:04 rpmi: python-module-Pygments-2.2.0-alt2 1526455576 installed <13>Nov 9 10:28:04 rpmi: python-module-sphinxcontrib-websupport-1.0.1-alt3.qa1 sisyphus.214922.100 1539851266 installed <13>Nov 9 10:28:04 rpmi: python-module-sphinx-1:1.6.5-alt3 sisyphus.213215.100 1537280252 installed <13>Nov 9 10:28:04 rpmi: python-module-numpydoc-1:0.7.0-alt1 1511771218 installed <13>Nov 9 10:28:04 rpmi: libnsl2-devel-1.1.0-alt1_1 1511548749 installed <13>Nov 9 10:28:04 rpmi: python-dev-2.7.14-alt7.1 sisyphus.212296.100 1535808823 installed <13>Nov 9 10:28:04 rpmi: python-module-setuptools-1:40.5.0-alt1 sisyphus.216029.100 1541106477 installed <13>Nov 9 10:28:04 rpmi: scons-3.0.1-alt1 1518686948 installed <13>Nov 9 10:28:04 rpmi: libnumpy-devel-1:1.13.3-alt2.2.qa1 sisyphus.214885.100 1539806695 installed <13>Nov 9 10:28:04 rpmi: python-module-OpenGL-3.1.1a1-alt1.S1 1517141780 installed <13>Nov 9 10:28:05 rpmi: libfreetype-devel-2.9.1-alt1.S1 1530781053 installed <13>Nov 9 10:28:05 rpmi: gcc-c++-7-alt6 1528289187 installed <13>Nov 9 10:28:05 rpmi: libGLEW-devel-2.1.0-alt2.S1 1501869756 installed <13>Nov 9 10:28:05 rpmi: libfreeglut-devel-3.0.0-alt3 sisyphus.215254.100 1540853076 installed <13>Nov 9 10:28:05 rpmi: tk-devel-8.6.8-alt1 1518663864 installed <13>Nov 9 10:28:05 rpmi: libmsgpack-devel-3.1.1-alt1 sisyphus.214704.100 1539462324 installed <13>Nov 9 10:28:05 rpmi: libpng-devel-1.6.35-alt1 sisyphus.214397.100 1539159349 installed <13>Nov 9 10:28:05 rpmi: libxml2-devel-1:2.9.4.0.12.e905-alt1.1 1525115767 installed Building target platforms: i586 Building for target i586 Wrote: /usr/src/in/nosrpm/pymol-1.8.6.0-alt1.nosrc.rpm Installing pymol-1.8.6.0-alt1.src.rpm Building target platforms: i586 Building for target i586 Executing(%prep): /bin/sh -e /usr/src/tmp/rpm-tmp.52459 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + rm -rf pymol-1.8.6.0 + echo 'Source #0 (pymol-1.8.6.0.tar):' Source #0 (pymol-1.8.6.0.tar): + /bin/tar -xf /usr/src/RPM/SOURCES/pymol-1.8.6.0.tar + cd pymol-1.8.6.0 + /bin/chmod -c -Rf u+rwX,go-w . + cp /usr/src/RPM/SOURCES/PymolRef.pdf ./ + exit 0 Executing(%build): /bin/sh -e /usr/src/tmp/rpm-tmp.2598 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd pymol-1.8.6.0 + CFLAGS='-pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic' + export CFLAGS + CXXFLAGS='-pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic' + export CXXFLAGS + FFLAGS='-pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic' + export FFLAGS + /usr/bin/python2.7 setup.py build running build running build_py creating build/lib.linux-i686-2.7 creating build/lib.linux-i686-2.7/pymol creating build/lib.linux-i686-2.7/pymol/embed creating build/lib.linux-i686-2.7/pymol/embed/epymol copying modules/pymol/embed/epymol/__init__.py -> build/lib.linux-i686-2.7/pymol/embed/epymol creating build/lib.linux-i686-2.7/chempy creating build/lib.linux-i686-2.7/chempy/tinker copying modules/chempy/tinker/state.py -> build/lib.linux-i686-2.7/chempy/tinker copying modules/chempy/tinker/realtime.py -> build/lib.linux-i686-2.7/chempy/tinker copying modules/chempy/tinker/keyword.py -> build/lib.linux-i686-2.7/chempy/tinker copying modules/chempy/tinker/amber.py -> build/lib.linux-i686-2.7/chempy/tinker copying modules/chempy/tinker/__init__.py -> build/lib.linux-i686-2.7/chempy/tinker creating build/lib.linux-i686-2.7/pmg_tk creating build/lib.linux-i686-2.7/pmg_tk/skins creating build/lib.linux-i686-2.7/pmg_tk/skins/demo copying modules/pmg_tk/skins/demo/__init__.py -> build/lib.linux-i686-2.7/pmg_tk/skins/demo creating build/lib.linux-i686-2.7/pmg_tk/startup copying modules/pmg_tk/startup/remote_pdb_load.py -> build/lib.linux-i686-2.7/pmg_tk/startup copying modules/pmg_tk/startup/apbs_tools.py -> build/lib.linux-i686-2.7/pmg_tk/startup copying modules/pmg_tk/startup/__init__.py -> build/lib.linux-i686-2.7/pmg_tk/startup creating build/lib.linux-i686-2.7/pymol/opengl creating build/lib.linux-i686-2.7/pymol/opengl/glu copying modules/pymol/opengl/glu/__init__.py -> build/lib.linux-i686-2.7/pymol/opengl/glu creating build/lib.linux-i686-2.7/chempy/mmtf copying modules/chempy/mmtf/io.py -> build/lib.linux-i686-2.7/chempy/mmtf copying modules/chempy/mmtf/__init__.py -> build/lib.linux-i686-2.7/chempy/mmtf creating build/lib.linux-i686-2.7/pmg_wx copying modules/pmg_wx/__init__.py -> build/lib.linux-i686-2.7/pmg_wx creating build/lib.linux-i686-2.7/chempy/fast copying modules/chempy/fast/__init__.py -> build/lib.linux-i686-2.7/chempy/fast creating build/lib.linux-i686-2.7/chempy/fragments copying modules/chempy/fragments/__init__.py -> build/lib.linux-i686-2.7/chempy/fragments copying modules/pmg_tk/skins/__init__.py -> build/lib.linux-i686-2.7/pmg_tk/skins creating build/lib.linux-i686-2.7/web copying modules/web/pymolhttpd.py -> build/lib.linux-i686-2.7/web copying modules/web/__init__.py -> build/lib.linux-i686-2.7/web copying modules/pymol/embed/__init__.py -> build/lib.linux-i686-2.7/pymol/embed creating build/lib.linux-i686-2.7/pymol/contrib copying modules/pymol/contrib/__init__.py -> build/lib.linux-i686-2.7/pymol/contrib creating build/lib.linux-i686-2.7/pymol/opengl/glut copying modules/pymol/opengl/glut/__init__.py -> build/lib.linux-i686-2.7/pymol/opengl/glut creating build/lib.linux-i686-2.7/pymol2 copying modules/pymol2/cmd2.py -> build/lib.linux-i686-2.7/pymol2 copying modules/pymol2/__init__.py -> build/lib.linux-i686-2.7/pymol2 creating build/lib.linux-i686-2.7/web/examples copying modules/web/examples/justhttpd.py -> build/lib.linux-i686-2.7/web/examples copying modules/web/examples/__init__.py -> build/lib.linux-i686-2.7/web/examples copying modules/pmg_tk/volume.py -> build/lib.linux-i686-2.7/pmg_tk copying modules/pmg_tk/__init__.py -> build/lib.linux-i686-2.7/pmg_tk copying modules/pmg_tk/TextEditor.py -> build/lib.linux-i686-2.7/pmg_tk copying modules/pmg_tk/Setting.py -> build/lib.linux-i686-2.7/pmg_tk copying modules/pmg_tk/SetEditor.py -> build/lib.linux-i686-2.7/pmg_tk copying modules/pmg_tk/PyMOLMapLoad.py -> build/lib.linux-i686-2.7/pmg_tk copying modules/pmg_tk/PMGApp.py -> build/lib.linux-i686-2.7/pmg_tk copying modules/pmg_tk/Demo.py -> build/lib.linux-i686-2.7/pmg_tk copying modules/pmg_tk/ColorEditor.py -> build/lib.linux-i686-2.7/pmg_tk creating build/lib.linux-i686-2.7/pmg_tk/skins/normal copying modules/pmg_tk/skins/normal/builder.py -> build/lib.linux-i686-2.7/pmg_tk/skins/normal copying modules/pmg_tk/skins/normal/__init__.py -> build/lib.linux-i686-2.7/pmg_tk/skins/normal copying modules/pmg_tk/skins/normal/ModalWindow.py -> build/lib.linux-i686-2.7/pmg_tk/skins/normal creating build/lib.linux-i686-2.7/chempy/champ copying modules/chempy/champ/formal_charges.py -> build/lib.linux-i686-2.7/chempy/champ copying modules/chempy/champ/assign.py -> build/lib.linux-i686-2.7/chempy/champ copying modules/chempy/champ/amber99.py -> build/lib.linux-i686-2.7/chempy/champ copying modules/chempy/champ/__init__.py -> build/lib.linux-i686-2.7/chempy/champ creating build/lib.linux-i686-2.7/pymol/embed/wxpymol copying modules/pymol/embed/wxpymol/__init__.py -> build/lib.linux-i686-2.7/pymol/embed/wxpymol creating build/lib.linux-i686-2.7/pymol/wizard copying modules/pymol/wizard/toggle.py -> build/lib.linux-i686-2.7/pymol/wizard copying modules/pymol/wizard/stereodemo.py -> build/lib.linux-i686-2.7/pymol/wizard copying modules/pymol/wizard/security.py -> build/lib.linux-i686-2.7/pymol/wizard copying modules/pymol/wizard/sculpting.py -> build/lib.linux-i686-2.7/pymol/wizard copying modules/pymol/wizard/renaming.py -> build/lib.linux-i686-2.7/pymol/wizard copying modules/pymol/wizard/pseudoatom.py -> build/lib.linux-i686-2.7/pymol/wizard copying modules/pymol/wizard/pair_fit.py -> build/lib.linux-i686-2.7/pymol/wizard copying modules/pymol/wizard/mutagenesis.py -> build/lib.linux-i686-2.7/pymol/wizard copying modules/pymol/wizard/message.py -> build/lib.linux-i686-2.7/pymol/wizard copying modules/pymol/wizard/measurement.py -> build/lib.linux-i686-2.7/pymol/wizard copying modules/pymol/wizard/label.py -> build/lib.linux-i686-2.7/pymol/wizard copying modules/pymol/wizard/filter.py -> build/lib.linux-i686-2.7/pymol/wizard copying modules/pymol/wizard/fedora.py -> build/lib.linux-i686-2.7/pymol/wizard copying modules/pymol/wizard/dragging.py -> build/lib.linux-i686-2.7/pymol/wizard copying modules/pymol/wizard/distance.py -> build/lib.linux-i686-2.7/pymol/wizard copying modules/pymol/wizard/density.py -> build/lib.linux-i686-2.7/pymol/wizard copying modules/pymol/wizard/demo.py -> build/lib.linux-i686-2.7/pymol/wizard copying modules/pymol/wizard/command.py -> build/lib.linux-i686-2.7/pymol/wizard copying modules/pymol/wizard/cleanup.py -> build/lib.linux-i686-2.7/pymol/wizard copying modules/pymol/wizard/charge.py -> build/lib.linux-i686-2.7/pymol/wizard copying modules/pymol/wizard/box.py -> build/lib.linux-i686-2.7/pymol/wizard copying modules/pymol/wizard/benchmark.py -> build/lib.linux-i686-2.7/pymol/wizard copying modules/pymol/wizard/appearance.py -> build/lib.linux-i686-2.7/pymol/wizard copying modules/pymol/wizard/annotation.py -> build/lib.linux-i686-2.7/pymol/wizard copying modules/pymol/wizard/__init__.py -> build/lib.linux-i686-2.7/pymol/wizard creating build/lib.linux-i686-2.7/pymol/opengl/gl copying modules/pymol/opengl/gl/__init__.py -> build/lib.linux-i686-2.7/pymol/opengl/gl copying modules/pymol/xwin.py -> build/lib.linux-i686-2.7/pymol copying modules/pymol/xray.py -> build/lib.linux-i686-2.7/pymol copying modules/pymol/wizarding.py -> build/lib.linux-i686-2.7/pymol copying modules/pymol/viewing.py -> build/lib.linux-i686-2.7/pymol copying modules/pymol/vfont.py -> build/lib.linux-i686-2.7/pymol copying modules/pymol/util.py -> build/lib.linux-i686-2.7/pymol copying modules/pymol/shortcut.py -> build/lib.linux-i686-2.7/pymol copying modules/pymol/setting.py -> build/lib.linux-i686-2.7/pymol copying modules/pymol/selector.py -> build/lib.linux-i686-2.7/pymol copying modules/pymol/selecting.py -> build/lib.linux-i686-2.7/pymol copying modules/pymol/rpc.py -> build/lib.linux-i686-2.7/pymol copying modules/pymol/querying.py -> build/lib.linux-i686-2.7/pymol copying modules/pymol/preset.py -> build/lib.linux-i686-2.7/pymol copying modules/pymol/povray.py -> build/lib.linux-i686-2.7/pymol copying modules/pymol/parsing.py -> build/lib.linux-i686-2.7/pymol copying modules/pymol/parser.py -> build/lib.linux-i686-2.7/pymol copying modules/pymol/moving.py -> build/lib.linux-i686-2.7/pymol copying modules/pymol/movie.py -> build/lib.linux-i686-2.7/pymol copying modules/pymol/morphing.py -> build/lib.linux-i686-2.7/pymol copying modules/pymol/monitoring.py -> build/lib.linux-i686-2.7/pymol copying modules/pymol/menu.py -> build/lib.linux-i686-2.7/pymol copying modules/pymol/m4x.py -> build/lib.linux-i686-2.7/pymol copying modules/pymol/locking.py -> build/lib.linux-i686-2.7/pymol copying modules/pymol/keywords.py -> build/lib.linux-i686-2.7/pymol copying modules/pymol/keyboard.py -> build/lib.linux-i686-2.7/pymol copying modules/pymol/invocation.py -> build/lib.linux-i686-2.7/pymol copying modules/pymol/internal.py -> build/lib.linux-i686-2.7/pymol copying modules/pymol/importing.py -> build/lib.linux-i686-2.7/pymol copying modules/pymol/helping.py -> build/lib.linux-i686-2.7/pymol copying modules/pymol/headering.py -> build/lib.linux-i686-2.7/pymol copying modules/pymol/gui.py -> build/lib.linux-i686-2.7/pymol copying modules/pymol/fitting.py -> build/lib.linux-i686-2.7/pymol copying modules/pymol/feedingback.py -> build/lib.linux-i686-2.7/pymol copying modules/pymol/externing.py -> build/lib.linux-i686-2.7/pymol copying modules/pymol/exporting.py -> build/lib.linux-i686-2.7/pymol copying modules/pymol/experimenting.py -> build/lib.linux-i686-2.7/pymol copying modules/pymol/editor.py -> build/lib.linux-i686-2.7/pymol copying modules/pymol/editing.py -> build/lib.linux-i686-2.7/pymol copying modules/pymol/creating.py -> build/lib.linux-i686-2.7/pymol copying modules/pymol/controlling.py -> build/lib.linux-i686-2.7/pymol copying modules/pymol/constants_palette.py -> build/lib.linux-i686-2.7/pymol copying modules/pymol/constants.py -> build/lib.linux-i686-2.7/pymol copying modules/pymol/computing.py -> build/lib.linux-i686-2.7/pymol copying modules/pymol/completing.py -> build/lib.linux-i686-2.7/pymol copying modules/pymol/commanding.py -> build/lib.linux-i686-2.7/pymol copying modules/pymol/colorramping.py -> build/lib.linux-i686-2.7/pymol copying modules/pymol/cmd.py -> build/lib.linux-i686-2.7/pymol copying modules/pymol/checking.py -> build/lib.linux-i686-2.7/pymol copying modules/pymol/cgo.py -> build/lib.linux-i686-2.7/pymol copying modules/pymol/callback.py -> build/lib.linux-i686-2.7/pymol copying modules/pymol/api.py -> build/lib.linux-i686-2.7/pymol copying modules/pymol/__main__.py -> build/lib.linux-i686-2.7/pymol copying modules/pymol/__init__.py -> build/lib.linux-i686-2.7/pymol creating build/lib.linux-i686-2.7/chempy/bmin copying modules/chempy/bmin/util.py -> build/lib.linux-i686-2.7/chempy/bmin copying modules/chempy/bmin/state.py -> build/lib.linux-i686-2.7/chempy/bmin copying modules/chempy/bmin/realtime.py -> build/lib.linux-i686-2.7/chempy/bmin copying modules/chempy/bmin/commands.py -> build/lib.linux-i686-2.7/chempy/bmin copying modules/chempy/bmin/__init__.py -> build/lib.linux-i686-2.7/chempy/bmin copying modules/chempy/xyz.py -> build/lib.linux-i686-2.7/chempy copying modules/chempy/water_residues.py -> build/lib.linux-i686-2.7/chempy copying modules/chempy/water_amber.py -> build/lib.linux-i686-2.7/chempy copying modules/chempy/solvate.py -> build/lib.linux-i686-2.7/chempy copying modules/chempy/sdf.py -> build/lib.linux-i686-2.7/chempy copying modules/chempy/protein_residues.py -> build/lib.linux-i686-2.7/chempy copying modules/chempy/protein_mmff.py -> build/lib.linux-i686-2.7/chempy copying modules/chempy/protein_amber99.py -> build/lib.linux-i686-2.7/chempy copying modules/chempy/protein_amber.py -> build/lib.linux-i686-2.7/chempy copying modules/chempy/protein.py -> build/lib.linux-i686-2.7/chempy copying modules/chempy/place.py -> build/lib.linux-i686-2.7/chempy copying modules/chempy/pkl.py -> build/lib.linux-i686-2.7/chempy copying modules/chempy/pdb.py -> build/lib.linux-i686-2.7/chempy copying modules/chempy/neighbor.py -> build/lib.linux-i686-2.7/chempy copying modules/chempy/mol2.py -> build/lib.linux-i686-2.7/chempy copying modules/chempy/mol.py -> build/lib.linux-i686-2.7/chempy copying modules/chempy/models.py -> build/lib.linux-i686-2.7/chempy copying modules/chempy/mmd.py -> build/lib.linux-i686-2.7/chempy copying modules/chempy/mass.py -> build/lib.linux-i686-2.7/chempy copying modules/chempy/map.py -> build/lib.linux-i686-2.7/chempy copying modules/chempy/mae.py -> build/lib.linux-i686-2.7/chempy copying modules/chempy/lst.py -> build/lib.linux-i686-2.7/chempy copying modules/chempy/io.py -> build/lib.linux-i686-2.7/chempy copying modules/chempy/hetatm.py -> build/lib.linux-i686-2.7/chempy copying modules/chempy/gms.py -> build/lib.linux-i686-2.7/chempy copying modules/chempy/gamess1.py -> build/lib.linux-i686-2.7/chempy copying modules/chempy/dictdb.py -> build/lib.linux-i686-2.7/chempy copying modules/chempy/cpv.py -> build/lib.linux-i686-2.7/chempy copying modules/chempy/cif.py -> build/lib.linux-i686-2.7/chempy copying modules/chempy/charge.py -> build/lib.linux-i686-2.7/chempy copying modules/chempy/cex.py -> build/lib.linux-i686-2.7/chempy copying modules/chempy/cc1.py -> build/lib.linux-i686-2.7/chempy copying modules/chempy/brick.py -> build/lib.linux-i686-2.7/chempy copying modules/chempy/bonds.py -> build/lib.linux-i686-2.7/chempy copying modules/chempy/bond_mmff.py -> build/lib.linux-i686-2.7/chempy copying modules/chempy/bond_amber.py -> build/lib.linux-i686-2.7/chempy copying modules/chempy/arc.py -> build/lib.linux-i686-2.7/chempy copying modules/chempy/__init__.py -> build/lib.linux-i686-2.7/chempy creating build/lib.linux-i686-2.7/pymol/plugins copying modules/pymol/plugins/repository.py -> build/lib.linux-i686-2.7/pymol/plugins copying modules/pymol/plugins/managergui.py -> build/lib.linux-i686-2.7/pymol/plugins copying modules/pymol/plugins/legacysupport.py -> build/lib.linux-i686-2.7/pymol/plugins copying modules/pymol/plugins/installation.py -> build/lib.linux-i686-2.7/pymol/plugins copying modules/pymol/plugins/__init__.py -> build/lib.linux-i686-2.7/pymol/plugins copying modules/pymol/opengl/__init__.py -> build/lib.linux-i686-2.7/pymol/opengl running build_ext building 'pymol._cmd' extension creating build/temp.linux-i686-2.7 creating build/temp.linux-i686-2.7/ov creating build/temp.linux-i686-2.7/ov/src creating build/temp.linux-i686-2.7/layer0 creating build/temp.linux-i686-2.7/layer1 creating build/temp.linux-i686-2.7/layer2 creating build/temp.linux-i686-2.7/layer3 creating build/temp.linux-i686-2.7/layer4 creating build/temp.linux-i686-2.7/layer5 creating build/temp.linux-i686-2.7/modules creating build/temp.linux-i686-2.7/modules/cealign creating build/temp.linux-i686-2.7/modules/cealign/src creating build/temp.linux-i686-2.7/build creating build/temp.linux-i686-2.7/build/generated creating build/temp.linux-i686-2.7/contrib creating build/temp.linux-i686-2.7/contrib/uiuc creating build/temp.linux-i686-2.7/contrib/uiuc/plugins creating build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin creating build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src creating build/temp.linux-i686-2.7/contrib/mmtf-c i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c ov/src/ov_utility.cpp -o build/temp.linux-i686-2.7/ov/src/ov_utility.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c ov/src/OVRandom.cpp -o build/temp.linux-i686-2.7/ov/src/OVRandom.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c ov/src/OVOneToOne.cpp -o build/temp.linux-i686-2.7/ov/src/OVOneToOne.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c ov/src/OVOneToAny.cpp -o build/temp.linux-i686-2.7/ov/src/OVOneToAny.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c ov/src/OVLexicon.cpp -o build/temp.linux-i686-2.7/ov/src/OVLexicon.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c ov/src/OVHeapArray.cpp -o build/temp.linux-i686-2.7/ov/src/OVHeapArray.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c ov/src/OVHeap.cpp -o build/temp.linux-i686-2.7/ov/src/OVHeap.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c ov/src/OVContext.cpp -o build/temp.linux-i686-2.7/ov/src/OVContext.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 ov/src/OVContext.cpp: In function 'void OVContext_Del(OVContext*)': ov/src/OVContext.cpp:21:13: warning: variable 'heap' set but not used [-Wunused-but-set-variable] OVHeap *heap = I->heap; ^~~~ i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/os_gl.cpp -o build/temp.linux-i686-2.7/layer0/os_gl.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Word.cpp -o build/temp.linux-i686-2.7/layer0/Word.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Vector.cpp -o build/temp.linux-i686-2.7/layer0/Vector.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Util2.cpp -o build/temp.linux-i686-2.7/layer0/Util2.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Util.cpp -o build/temp.linux-i686-2.7/layer0/Util.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Triangle.cpp -o build/temp.linux-i686-2.7/layer0/Triangle.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Tracker.cpp -o build/temp.linux-i686-2.7/layer0/Tracker.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Texture.cpp -o build/temp.linux-i686-2.7/layer0/Texture.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Tetsurf.cpp -o build/temp.linux-i686-2.7/layer0/Tetsurf.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Sphere.cpp -o build/temp.linux-i686-2.7/layer0/Sphere.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/ShaderMgr.cpp -o build/temp.linux-i686-2.7/layer0/ShaderMgr.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 layer0/ShaderMgr.cpp: In function 'char* CShaderPrg_ReadFromFile_Or_Use_String_Replace_Strings(PyMOLGlobals*, char*, char*, char*, char**)': layer0/ShaderMgr.cpp:281:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] while (((size_t)(pl - buffer)) < res){ ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ layer0/ShaderMgr.cpp: In function 'void CShaderMgr_Reload_Shader_Variables(PyMOLGlobals*)': layer0/ShaderMgr.cpp:392:7: warning: variable 'bg_image_mode_solid' set but not used [-Wunused-but-set-variable] int bg_image_mode_solid; ^~~~~~~~~~~~~~~~~~~ layer0/ShaderMgr.cpp: In function 'CShaderPrg* CShaderPrg_Enable_CylinderShader(PyMOLGlobals*)': layer0/ShaderMgr.cpp:1821:10: warning: variable 'm' set but not used [-Wunused-but-set-variable] float *m; ^ i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Queue.cpp -o build/temp.linux-i686-2.7/layer0/Queue.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Pixmap.cpp -o build/temp.linux-i686-2.7/layer0/Pixmap.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Parse.cpp -o build/temp.linux-i686-2.7/layer0/Parse.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/MyPNG.cpp -o build/temp.linux-i686-2.7/layer0/MyPNG.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/MemoryDebug.cpp -o build/temp.linux-i686-2.7/layer0/MemoryDebug.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 layer0/MemoryDebug.cpp: In function 'void* VLADeleteRaw(void*, int, unsigned int)': layer0/MemoryDebug.cpp:365:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(index < -old_size) ~~~~~~^~~~~~~~~~~ layer0/MemoryDebug.cpp:377:15: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] (index < vla->size) && ((count + index) <= vla->size)) { ~~~~~~^~~~~~~~~~~ layer0/MemoryDebug.cpp: In function 'void* VLAInsertRaw(void*, int, unsigned int)': layer0/MemoryDebug.cpp:398:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(index < -old_size) ~~~~~~^~~~~~~~~~~ layer0/MemoryDebug.cpp:405:14: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(index > old_size) ~~~~~~^~~~~~~~~~ layer0/MemoryDebug.cpp:408:46: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if((index >= 0) && (count > 0) && (index <= old_size)) { ~~~~~~^~~~~~~~~~~ i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/MemoryCache.cpp -o build/temp.linux-i686-2.7/layer0/MemoryCache.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Matrix.cpp -o build/temp.linux-i686-2.7/layer0/Matrix.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 layer0/Matrix.cpp: In function 'float MatrixFitRMSTTTf(PyMOLGlobals*, int, const float*, const float*, const float*, float*)': layer0/Matrix.cpp:1179:18: warning: variable 'ix' set but not used [-Wunused-but-set-variable] int iters, ix, iy, iz, unchanged = 0; ^~ i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Match.cpp -o build/temp.linux-i686-2.7/layer0/Match.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Map.cpp -o build/temp.linux-i686-2.7/layer0/Map.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Isosurf.cpp -o build/temp.linux-i686-2.7/layer0/Isosurf.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 layer0/Isosurf.cpp: In function 'Isofield* IsosurfNewFromPyList(PyMOLGlobals*, PyObject*)': layer0/Isosurf.cpp:159:7: warning: variable 'll' set but not used [-Wunused-but-set-variable] int ll; ^~ i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/File.cpp -o build/temp.linux-i686-2.7/layer0/File.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Field.cpp -o build/temp.linux-i686-2.7/layer0/Field.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 layer0/Field.cpp: In function 'CField* FieldNewFromPyList(PyMOLGlobals*, PyObject*)': layer0/Field.cpp:181:7: warning: variable 'll' set but not used [-Wunused-but-set-variable] int ll; ^~ i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Feedback.cpp -o build/temp.linux-i686-2.7/layer0/Feedback.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Err.cpp -o build/temp.linux-i686-2.7/layer0/Err.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Deferred.cpp -o build/temp.linux-i686-2.7/layer0/Deferred.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Debug.cpp -o build/temp.linux-i686-2.7/layer0/Debug.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Crystal.cpp -o build/temp.linux-i686-2.7/layer0/Crystal.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Block.cpp -o build/temp.linux-i686-2.7/layer0/Block.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Wizard.cpp -o build/temp.linux-i686-2.7/layer1/Wizard.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 layer1/Wizard.cpp: In function 'void WizardDraw(Block*, CGO*)': layer1/Wizard.cpp:864:5: warning: this 'else' clause does not guard... [-Wmisleading-indentation] else ^~~~ layer1/Wizard.cpp:866:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' BlockFill(I->Block ORTHOCGOARGVAR); ^~~~~~~~~ layer1/Wizard.cpp:872:5: warning: this 'else' clause does not guard... [-Wmisleading-indentation] else ^~~~ layer1/Wizard.cpp:874:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' BlockDrawTopEdge(I->Block); ^~~~~~~~~~~~~~~~ i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/View.cpp -o build/temp.linux-i686-2.7/layer1/View.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/TypeFace.cpp -o build/temp.linux-i686-2.7/layer1/TypeFace.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Text.cpp -o build/temp.linux-i686-2.7/layer1/Text.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Symmetry.cpp -o build/temp.linux-i686-2.7/layer1/Symmetry.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Shaker.cpp -o build/temp.linux-i686-2.7/layer1/Shaker.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Setting.cpp -o build/temp.linux-i686-2.7/layer1/Setting.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Seq.cpp -o build/temp.linux-i686-2.7/layer1/Seq.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 layer1/Seq.cpp: In function 'int SeqFindRowCol(PyMOLGlobals*, int, int, int*, int*, int)': layer1/Seq.cpp:83:41: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if((char_num >= 0) && (char_num < row->ext_len) && (row->char2col)) { ~~~~~~~~~^~~~~~~~~~~~~~ layer1/Seq.cpp: In function 'void SeqReshape(Block*, int, int)': layer1/Seq.cpp:137:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(I->Row[a].ext_len > I->Size) ~~~~~~~~~~~~~~~~~~^~~~~~~~~ layer1/Seq.cpp: In function 'void SeqDraw(Block*, CGO*)': layer1/Seq.cpp:419:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(max_len < row->ext_len) ~~~~~~~~^~~~~~~~~~~~~~ i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/ScrollBar.cpp -o build/temp.linux-i686-2.7/layer1/ScrollBar.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Scene.cpp -o build/temp.linux-i686-2.7/layer1/Scene.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 layer1/Scene.cpp: In function 'int SceneDrawImageOverlay(PyMOLGlobals*, CGO*)': layer1/Scene.cpp:3352:20: warning: variable 'color_word' set but not used [-Wunused-but-set-variable] unsigned int color_word; ^~~~~~~~~~ layer1/Scene.cpp: In function 'unsigned int* SceneReadTriplets(PyMOLGlobals*, int, int, int, int, GLenum)': layer1/Scene.cpp:3574:7: warning: variable 'dim' set but not used [-Wunused-but-set-variable] int dim[3]; ^~~ layer1/Scene.cpp: In function 'int SceneDrag(Block*, int, int, int, double)': layer1/Scene.cpp:5913:8: warning: variable 'result' set but not used [-Wunused-but-set-variable] int result, which_light; ^~~~~~ layer1/Scene.cpp:5961:8: warning: variable 'result' set but not used [-Wunused-but-set-variable] int result, which_light; ^~~~~~ layer1/Scene.cpp: In function 'void SceneReshape(Block*, int, int)': layer1/Scene.cpp:6373:7: warning: variable 'y' set but not used [-Wunused-but-set-variable] int y = height; ^ layer1/Scene.cpp: In function 'void SceneApplyImageGamma(PyMOLGlobals*, unsigned int*, int, int)': layer1/Scene.cpp:6520:7: warning: variable 'big_endian' set but not used [-Wunused-but-set-variable] int big_endian; ^~~~~~~~~~ layer1/Scene.cpp: In function 'bool SceneRay(PyMOLGlobals*, int, int, int, char**, char**, float, float, int, G3dPrimitive**, int, int)': layer1/Scene.cpp:6749:7: warning: variable 'curState' set but not used [-Wunused-but-set-variable] int curState; ^~~~~~~~ i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Rep.cpp -o build/temp.linux-i686-2.7/layer1/Rep.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Ray.cpp -o build/temp.linux-i686-2.7/layer1/Ray.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 layer1/Ray.cpp: In function 'void RayRender(CRay*, unsigned int*, double, float, int, unsigned int*)': layer1/Ray.cpp:5835:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(x_stop > width) ~~~~~~~^~~~~~~ layer1/Ray.cpp:5837:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(y_stop > height) ~~~~~~~^~~~~~~~ layer1/Ray.cpp:5913:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(y = 0; y < height; y++) ~~^~~~~~~~ layer1/Ray.cpp:5914:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(x = 0; x < width; x++) { ~~^~~~~~~ layer1/Ray.cpp:5925:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(x < (width - 1)) { ~~^~~~~~~~~~~~~ layer1/Ray.cpp:5936:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(y < (height - 1)) { ~~^~~~~~~~~~~~~~ layer1/Ray.cpp:5999:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(y = 0; y < height; y++) ~~^~~~~~~~ layer1/Ray.cpp:6000:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(x = 0; x < width; x++) { ~~^~~~~~~ layer1/Ray.cpp:6010:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(x < (width - 1)) { ~~^~~~~~~~~~~~~ layer1/Ray.cpp:6022:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(y < (height - 1)) { ~~^~~~~~~~~~~~~~ layer1/Ray.cpp:6074:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(y = 0; y < height; y++){ ~~^~~~~~~~ layer1/Ray.cpp:6094:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(x = 0; x < width; x++) { ~~^~~~~~~ layer1/Ray.cpp:6114:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(x < (width - 1)) { ~~^~~~~~~~~~~~~ layer1/Ray.cpp:6128:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(y < (height - 1)) { ~~^~~~~~~~~~~~~~ layer1/Ray.cpp:6142:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(x && (y < (height - 1))) { ~~^~~~~~~~~~~~~~ layer1/Ray.cpp:6149:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(y && (x < (width - 1))) { ~~^~~~~~~~~~~~~ layer1/Ray.cpp:6156:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if((y < (height - 1)) && (x < (width - 1))) { ~~^~~~~~~~~~~~~~ layer1/Ray.cpp:6156:47: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if((y < (height - 1)) && (x < (width - 1))) { ~~^~~~~~~~~~~~~ layer1/Ray.cpp:6047:15: warning: variable 'dc' set but not used [-Wunused-but-set-variable] int dc = 0; ^~ layer1/Ray.cpp:6312:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(y = 0; y < height; y++) { ~~^~~~~~~~ layer1/Ray.cpp:6313:15: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(x = 0; x < width; x++) { ~~^~~~~~~ layer1/Ray.cpp: In function 'int RayTraceThread(CRayThreadInfo*)': layer1/Ray.cpp:3113:16: warning: 'back_mask' may be used uninitialized in this function [-Wmaybe-uninitialized] unsigned int back_mask; ^~~~~~~~~ i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/PyMOLObject.cpp -o build/temp.linux-i686-2.7/layer1/PyMOLObject.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 layer1/PyMOLObject.cpp: In function 'int ObjectStateFromPyList(PyMOLGlobals*, PyObject*, CObjectState*)': layer1/PyMOLObject.cpp:1451:7: warning: variable 'll' set but not used [-Wunused-but-set-variable] int ll = 0; ^~ i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Pop.cpp -o build/temp.linux-i686-2.7/layer1/Pop.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/PConv.cpp -o build/temp.linux-i686-2.7/layer1/PConv.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 layer1/PConv.cpp: In function 'int PConvPyListToBitmask(PyObject*, int*, ov_size)': layer1/PConv.cpp:87:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int i = 0; i < ll; i++) ~~^~~~ i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/P.cpp -o build/temp.linux-i686-2.7/layer1/P.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 layer1/P.cpp: In function 'int WrapperObjectAssignSubScript(PyObject*, PyObject*, PyObject*)': layer1/P.cpp:779:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (strlen(valstr) > ap->maxlen){ ~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/python2.7/Python.h:80:0, from layer0/os_python.h:34, from layer1/P.cpp:26: layer1/P.cpp: In function 'void PInit(PyMOLGlobals*, int)': /usr/include/python2.7/object.h:769:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ^ layer1/P.cpp:2258:5: note: in expansion of macro 'Py_INCREF' Py_INCREF(&Wrapper_Type); ^~~~~~~~~ /usr/include/python2.7/object.h:769:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ^ layer1/P.cpp:2259:5: note: in expansion of macro 'Py_INCREF' Py_INCREF(&settingWrapper_Type); ^~~~~~~~~ layer1/P.cpp: In function 'PyObject* PCatchIsAtty(PyObject*, PyObject*)': /usr/include/python2.7/object.h:769:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ^ /usr/include/python2.7/boolobject.h:28:32: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^~~~~~~~~ layer1/P.cpp:2789:3: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^~~~~~~~~~~~~~~ i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Ortho.cpp -o build/temp.linux-i686-2.7/layer1/Ortho.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 layer1/Ortho.cpp: In function 'void OrthoDoDraw(PyMOLGlobals*, int)': layer1/Ortho.cpp:1490:10: warning: variable 'v' set but not used [-Wunused-but-set-variable] float *v; ^ i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Movie.cpp -o build/temp.linux-i686-2.7/layer1/Movie.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 layer1/Movie.cpp: In function 'void MovieSetCommand(PyMOLGlobals*, int, char*)': layer1/Movie.cpp:1150:12: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(len > (sizeof(MovieCmdType) - 1)) ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer1/Movie.cpp: In function 'void MovieModalPNG(PyMOLGlobals*, CMovie*, CMovieModal*)': layer1/Movie.cpp:699:13: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 221 [-Wformat-truncation=] static void MovieModalPNG(PyMOLGlobals * G, CMovie * I, CMovieModal * M) ^~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862:0, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer1/Movie.cpp:17: /usr/include/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 37 and 1060 bytes into a destination of size 255 __bos (__s), __fmt, __va_arg_pack ()); ^ i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/FontType.cpp -o build/temp.linux-i686-2.7/layer1/FontType.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/FontGLUTHel18.cpp -o build/temp.linux-i686-2.7/layer1/FontGLUTHel18.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/FontGLUTHel12.cpp -o build/temp.linux-i686-2.7/layer1/FontGLUTHel12.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/FontGLUTHel10.cpp -o build/temp.linux-i686-2.7/layer1/FontGLUTHel10.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/FontGLUT9x15.cpp -o build/temp.linux-i686-2.7/layer1/FontGLUT9x15.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/FontGLUT8x13.cpp -o build/temp.linux-i686-2.7/layer1/FontGLUT8x13.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/FontGLUT.cpp -o build/temp.linux-i686-2.7/layer1/FontGLUT.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Font.cpp -o build/temp.linux-i686-2.7/layer1/Font.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Extrude.cpp -o build/temp.linux-i686-2.7/layer1/Extrude.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 layer1/Extrude.cpp: In function 'int ExtrudeCGOSurfaceVariableTube(CExtrude*, CGO*, int)': layer1/Extrude.cpp:1106:7: warning: variable 'start' set but not used [-Wunused-but-set-variable] int start, stop; ^~~~~ layer1/Extrude.cpp:1106:14: warning: variable 'stop' set but not used [-Wunused-but-set-variable] int start, stop; ^~~~ layer1/Extrude.cpp: In function 'int ExtrudeCGOSurfaceTube(CExtrude*, CGO*, int, float*, bool, int)': layer1/Extrude.cpp:809:39: warning: 'stop' may be used uninitialized in this function [-Wmaybe-uninitialized] if(color_override && (b > start) && (b < stop)) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Control.cpp -o build/temp.linux-i686-2.7/layer1/Control.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Color.cpp -o build/temp.linux-i686-2.7/layer1/Color.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 layer1/Color.cpp: In function 'int ColorExtFromPyList(PyMOLGlobals*, PyObject*, int)': layer1/Color.cpp:395:7: warning: variable 'll' set but not used [-Wunused-but-set-variable] int ll; ^~ layer1/Color.cpp: In function 'char* ColorGetName(PyMOLGlobals*, int)': layer1/Color.cpp:740:7: warning: '__builtin___sprintf_chk' writing a terminating nul past the end of the destination [-Wformat-overflow=] char *ColorGetName(PyMOLGlobals * G, int index) ^~~~~~~~~~~~ In file included from /usr/include/stdio.h:862:0, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer1/Color.cpp:17: /usr/include/bits/stdio2.h:34:43: note: '__builtin___sprintf_chk' output 11 bytes into a destination of size 10 __bos (__s), __fmt, __va_arg_pack ()); ^ i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Character.cpp -o build/temp.linux-i686-2.7/layer1/Character.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/COLLADA.cpp -o build/temp.linux-i686-2.7/layer1/COLLADA.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/CGO.cpp -o build/temp.linux-i686-2.7/layer1/CGO.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 layer1/CGO.cpp: In function 'CGO* CGONewFromPyList(PyMOLGlobals*, PyObject*, int)': layer1/CGO.cpp:315:7: warning: variable 'll' set but not used [-Wunused-but-set-variable] int ll; ^~ layer1/CGO.cpp: In function 'int CGOFromFloatArray(CGO*, const float*, int)': layer1/CGO.cpp:494:7: warning: variable 'c' set but not used [-Wunused-but-set-variable] int c; ^ layer1/CGO.cpp: In function 'CGO* CGOCombineBeginEnd(const CGO*, int)': layer1/CGO.cpp:1880:11: warning: variable 'pickColorValsUC' set but not used [-Wunused-but-set-variable] uchar *pickColorValsUC; ^~~~~~~~~~~~~~~ layer1/CGO.cpp: In function 'int OptimizePointsToVBO(CGO*, CGO*, int, float*, float*, short int*)': layer1/CGO.cpp:2382:9: warning: variable 'err' set but not used [-Wunused-but-set-variable] short err = 0; ^~~ layer1/CGO.cpp: In function 'int CGOProcessCGOtoArrays(PyMOLGlobals*, float*, CGO*, CGO*, float*, float*, int*, float*, float*, unsigned char*, float*, unsigned char*, float*, float*)': layer1/CGO.cpp:2654:9: warning: variable 'err' set but not used [-Wunused-but-set-variable] short err = 0; ^~~ layer1/CGO.cpp: In function 'int CGOProcessScreenCGOtoArrays(PyMOLGlobals*, float*, CGO*, float*, float*, float*, unsigned char*)': layer1/CGO.cpp:2928:8: warning: variable 'has_texcoord' set but not used [-Wunused-but-set-variable] short has_texcoord = false; ^~~~~~~~~~~~ layer1/CGO.cpp:2886:9: warning: variable 'err' set but not used [-Wunused-but-set-variable] short err = 0; ^~~ layer1/CGO.cpp: In function 'CGO* CGOOptimizeToVBONotIndexedWithReturnedData(CGO*, int, short int, float**)': layer1/CGO.cpp:3057:9: warning: variable 'err' set but not used [-Wunused-but-set-variable] short err = 0; ^~~ layer1/CGO.cpp: In function 'CGO* CGOOptimizeToVBOIndexedWithColorImpl(CGO*, int, float*, short int)': layer1/CGO.cpp:3531:9: warning: variable 'err' set but not used [-Wunused-but-set-variable] short err = 0; ^~~ layer1/CGO.cpp: In function 'CGO* CGOSimplify(CGO*, int)': layer1/CGO.cpp:5042:11: warning: variable 'pickColorValsUC' set but not used [-Wunused-but-set-variable] uchar *pickColorValsUC; ^~~~~~~~~~~~~~~ layer1/CGO.cpp: In function 'CGO* CGOExpandDrawTextures(CGO*, int)': layer1/CGO.cpp:5554:30: warning: variable 'onvals' set but not used [-Wunused-but-set-variable] int nvals = narrays*nverts, onvals; ^~~~~~ layer1/CGO.cpp: In function 'int CGORenderRay(CGO*, CRay*, const float*, CSetting*, CSetting*)': layer1/CGO.cpp:6084:42: warning: variable 'pickColorVals' set but not used [-Wunused-but-set-variable] float *normalVals = 0, *colorVals = 0, *pickColorVals; ^~~~~~~~~~~~~ layer1/CGO.cpp: In function 'void CGO_gl_draw_label(CCGORenderer*, float**)': layer1/CGO.cpp:6823:50: warning: variable 'textExtent' set but not used [-Wunused-but-set-variable] float worldPos[4], screenMin[3], screenMax[3], textExtent[4]; ^~~~~~~~~~ layer1/CGO.cpp: In function 'void CGO_gl_draw_texture(CCGORenderer*, float**)': layer1/CGO.cpp:6864:50: warning: variable 'textExtent' set but not used [-Wunused-but-set-variable] float worldPos[4], screenMin[3], screenMax[3], textExtent[4]; ^~~~~~~~~~ layer1/CGO.cpp: In function 'void CGORenderGLPicking(CGO*, Picking**, PickContext*, CSetting*, CSetting*)': layer1/CGO.cpp:7381:57: warning: variable 'pidx' set but not used [-Wunused-but-set-variable] int nverts = CGO_get_int(pc+3), v, pl, idx = -1, pidx, bnd = -1, pbnd; ^~~~ layer1/CGO.cpp:7381:73: warning: variable 'pbnd' set but not used [-Wunused-but-set-variable] int nverts = CGO_get_int(pc+3), v, pl, idx = -1, pidx, bnd = -1, pbnd; ^~~~ layer1/CGO.cpp: In function 'int CGOSimpleCone(CGO*, float*, float*, float, float, float*, float*, int, int)': layer1/CGO.cpp:8295:9: warning: variable 'nub1' set but not used [-Wunused-but-set-variable] float nub1, nub2; ^~~~ layer1/CGO.cpp:8295:15: warning: variable 'nub2' set but not used [-Wunused-but-set-variable] float nub1, nub2; ^~~~ layer1/CGO.cpp: In function 'void CGO_gl_draw_buffers(CCGORenderer*, float**)': layer1/CGO.cpp:6409:23: warning: 'shaderPrg' may be used uninitialized in this function [-Wmaybe-uninitialized] CShaderPrg_Disable(shaderPrg); ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ layer1/CGO.cpp: In function 'void CGO_gl_draw_arrays(CCGORenderer*, float**)': layer1/CGO.cpp:6300:12: warning: 'vertexVals' may be used uninitialized in this function [-Wmaybe-uninitialized] float *vertexVals; ^~~~~~~~~~ layer1/CGO.cpp: In function 'CGO* CGOCombineBeginEnd(const CGO*, int)': layer1/CGO.cpp:1945:78: warning: 'normalVals' may be used uninitialized in this function [-Wmaybe-uninitialized] normalVals[pl] = tmp_ptr[0]; normalVals[pl+1] = tmp_ptr[1]; normalVals[pl+2] = tmp_ptr[2]; ^ layer1/CGO.cpp: In function 'int OptimizePointsToVBO(CGO*, CGO*, int, float*, float*, short int*)': layer1/CGO.cpp:2532:29: warning: 'pickColorValsDA' may be used uninitialized in this function [-Wmaybe-uninitialized] SetVertexValuesForVBO(I->G, cgo, arrays, pl, plc, cnt, incr++, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ vertexValsDA, normalValsDA, colorValsDA, pickColorValsDA, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ vertexVals, normalValsC, normalVals, colorValsUC, colorVals, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pickColorValsTMP, NULL, NULL); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer1/CGO.cpp: In function 'int CGOProcessCGOtoArrays(PyMOLGlobals*, float*, CGO*, CGO*, float*, float*, int*, float*, float*, unsigned char*, float*, unsigned char*, float*, float*)': layer1/CGO.cpp:2848:29: warning: 'pickColorValsDA' may be used uninitialized in this function [-Wmaybe-uninitialized] SetVertexValuesForVBO(G, cgo, arrays, pl, plc, cnt, incr++, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ vertexValsDA, normalValsDA, colorValsDA, pickColorValsDA, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ vertexVals, normalValsC, normalVals, colorValsUC, colorVals, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pickColorValsTMP, accessibilityVals, accessibilityValsDA); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer1/CGO.cpp:2808:29: warning: 'accessibilityValsDA' may be used uninitialized in this function [-Wmaybe-uninitialized] SetVertexValuesForVBO(G, cgo, arrays, pl, plc, cnt, incr++, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ vertexValsDA, normalValsDA, colorValsDA, pickColorValsDA, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ vertexVals, normalValsC, normalVals, colorValsUC, colorVals, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pickColorValsTMP, accessibilityVals, accessibilityValsDA); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer1/CGO.cpp:2848:29: warning: 'normalValsDA' may be used uninitialized in this function [-Wmaybe-uninitialized] SetVertexValuesForVBO(G, cgo, arrays, pl, plc, cnt, incr++, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ vertexValsDA, normalValsDA, colorValsDA, pickColorValsDA, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ vertexVals, normalValsC, normalVals, colorValsUC, colorVals, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pickColorValsTMP, accessibilityVals, accessibilityValsDA); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer1/CGO.cpp: In function 'CGO* CGOOptimizeToVBONotIndexedWithReturnedData(CGO*, int, short int, float**)': layer1/CGO.cpp:3348:29: warning: 'pickColorValsDA' may be used uninitialized in this function [-Wmaybe-uninitialized] SetVertexValuesForVBO(I->G, cgo, arrays, pl, plc, cnt, incr++, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ vertexValsDA, normalValsDA, colorValsDA, pickColorValsDA, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ vertexVals, normalValsC, normalVals, colorValsUC, colorVals, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pickColorValsTMP, NULL, NULL); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer1/CGO.cpp:3348:29: warning: 'normalValsDA' may be used uninitialized in this function [-Wmaybe-uninitialized] layer1/CGO.cpp: In function 'CGO* CGOSimplify(CGO*, int)': layer1/CGO.cpp:5090:78: warning: 'normalVals' may be used uninitialized in this function [-Wmaybe-uninitialized] normalVals[pl] = tmp_ptr[0]; normalVals[pl+1] = tmp_ptr[1]; normalVals[pl+2] = tmp_ptr[2]; ^ layer1/CGO.cpp: In function 'void CGORenderGLPicking(CGO*, Picking**, PickContext*, CSetting*, CSetting*)': layer1/CGO.cpp:7435:13: warning: 'pca' may be used uninitialized in this function [-Wmaybe-uninitialized] float *pca; ^~~ layer1/CGO.cpp:7457:26: warning: 'nverts' may be used uninitialized in this function [-Wmaybe-uninitialized] pickColorVals = pca + nverts; ~~~~^~~~~~~~ layer1/CGO.cpp: In function 'void CGORenderGL(CGO*, const float*, CSetting*, CSetting*, RenderInfo*, Rep*)': layer1/CGO.cpp:7757:12: warning: 'normalVals_tmp' may be used uninitialized in this function [-Wmaybe-uninitialized] n2 = normalVals_tmp + 3; ~~~^~~~~~~~~~~~~~~~~~~~ layer1/CGO.cpp: In function 'CGO* CGOOptimizeGLSLCylindersToVBOIndexedImpl(CGO*, int, short int, CGO*)': layer1/CGO.cpp:4519:15: warning: 'org_colorVals' may be used uninitialized in this function [-Wmaybe-uninitialized] glBufferData(GL_ARRAY_BUFFER, sizeof(float)*total_vert*4, org_colorVals, GL_STATIC_DRAW); ^ i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/ButMode.cpp -o build/temp.linux-i686-2.7/layer1/ButMode.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Basis.cpp -o build/temp.linux-i686-2.7/layer1/Basis.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/VFont.cpp -o build/temp.linux-i686-2.7/layer2/VFont.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 layer2/VFont.cpp: In function 'int VFontIndent(PyMOLGlobals*, int, const char*, float*, float*, float*, float)': layer2/VFont.cpp:145:10: warning: variable 'pc' set but not used [-Wunused-but-set-variable] float *pc; ^~ i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/SideChainHelper.cpp -o build/temp.linux-i686-2.7/layer2/SideChainHelper.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/SculptCache.cpp -o build/temp.linux-i686-2.7/layer2/SculptCache.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/Sculpt.cpp -o build/temp.linux-i686-2.7/layer2/Sculpt.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepWireBond.cpp -o build/temp.linux-i686-2.7/layer2/RepWireBond.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepSurface.cpp -o build/temp.linux-i686-2.7/layer2/RepSurface.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 layer2/RepSurface.cpp: In function 'void RepSurfaceRender(RepSurface*, RenderInfo*)': layer2/RepSurface.cpp:1128:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (ok) ^~ layer2/RepSurface.cpp:1130:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (ok && I->VAO){ ^~ layer2/RepSurface.cpp:1565:11: warning: variable 'col' set but not used [-Wunused-but-set-variable] float *col; ^~~ layer2/RepSurface.cpp:1687:28: warning: variable 'col' set but not used [-Wunused-but-set-variable] float *col; ^~~ layer2/RepSurface.cpp: In function 'void RepSurfaceColor(RepSurface*, CoordSet*)': layer2/RepSurface.cpp:2669:22: warning: variable 'planew' set but not used [-Wunused-but-set-variable] float d[3], *vn0, planew, v0mod[3]; ^~~~~~ layer2/RepSurface.cpp:2748:29: warning: variable 'planew' set but not used [-Wunused-but-set-variable] float d[3], *vn0, pt[3], planew, v0mod[3]; ^~~~~~ layer2/RepSurface.cpp:2904:15: warning: variable 'pi2' set but not used [-Wunused-but-set-variable] int pi = -1, pi2 = -1, catm = -1; /* variables for color smoothing */ ^~~ layer2/RepSurface.cpp: In function 'SolventDot* SolventDotNew(PyMOLGlobals*, float*, SurfaceJobAtomInfo*, float, SphereRec*, int*, int, int, int, int, int, float, int, float, float)': layer2/RepSurface.cpp:4624:7: warning: variable 'maxDot' set but not used [-Wunused-but-set-variable] int maxDot = 0; ^~~~~~ i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepSphere.cpp -o build/temp.linux-i686-2.7/layer2/RepSphere.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 layer2/RepSphere.cpp: In function 'int RenderSphereMode_Direct(PyMOLGlobals*, RepSphere*, RenderInfo*, int, float**, float, SphereRec*)': layer2/RepSphere.cpp:554:13: warning: variable 'last_vdw' set but not used [-Wunused-but-set-variable] float last_vdw = -1.0F; ^~~~~~~~ layer2/RepSphere.cpp: In function 'int RepSphereComputeSphereNormals(RepSphere*)': layer2/RepSphere.cpp:1501:6: warning: variable 'nbr_flag' set but not used [-Wunused-but-set-variable] int nbr_flag; ^~~~~~~~ layer2/RepSphere.cpp: In function 'Rep* RepSphereNew(CoordSet*, int)': layer2/RepSphere.cpp:1702:13: warning: 'v1[0]' may be used uninitialized in this function [-Wmaybe-uninitialized] v1[0] += v0[0] + vdw * sp->dot[q2][0]; ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer2/RepSphere.cpp:1687:13: note: 'v1[0]' was declared here float v1[3]; ^~ i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepRibbon.cpp -o build/temp.linux-i686-2.7/layer2/RepRibbon.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepNonbondedSphere.cpp -o build/temp.linux-i686-2.7/layer2/RepNonbondedSphere.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 layer2/RepNonbondedSphere.cpp: In function 'void RepNonbondedSphereRender(RepNonbondedSphere*, RenderInfo*)': layer2/RepNonbondedSphere.cpp:149:25: warning: variable 'use_default_shader' set but not used [-Wunused-but-set-variable] short use_shader, use_default_shader, use_sphere_shader, generate_shader_cgo = 0; ^~~~~~~~~~~~~~~~~~ i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepNonbonded.cpp -o build/temp.linux-i686-2.7/layer2/RepNonbonded.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepMesh.cpp -o build/temp.linux-i686-2.7/layer2/RepMesh.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 layer2/RepMesh.cpp: In function 'void RepMeshRender(RepMesh*, RenderInfo*)': layer2/RepMesh.cpp:289:29: warning: 'origin' may be used uninitialized in this function [-Wmaybe-uninitialized] axis[2] = v[2] - origin[2]; ~~~~~~~~^ i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepLabel.cpp -o build/temp.linux-i686-2.7/layer2/RepLabel.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepEllipsoid.cpp -o build/temp.linux-i686-2.7/layer2/RepEllipsoid.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepDot.cpp -o build/temp.linux-i686-2.7/layer2/RepDot.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepDistLabel.cpp -o build/temp.linux-i686-2.7/layer2/RepDistLabel.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 layer2/RepDistLabel.cpp: In function 'void RepDistLabelRender(RepDistLabel*, RenderInfo*)': layer2/RepDistLabel.cpp:109:7: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if(float_text) ^~ layer2/RepDistLabel.cpp:112:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!I->shaderCGO){ ^~ layer2/RepDistLabel.cpp: In function 'Rep* RepDistLabelNew(DistSet*, int)': layer2/RepDistLabel.cpp:403:19: warning: variable 'v5' set but not used [-Wunused-but-set-variable] float *v4, *v5, *v6; ^~ layer2/RepDistLabel.cpp:403:24: warning: variable 'v6' set but not used [-Wunused-but-set-variable] float *v4, *v5, *v6; ^~ i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepDistDash.cpp -o build/temp.linux-i686-2.7/layer2/RepDistDash.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepDihedral.cpp -o build/temp.linux-i686-2.7/layer2/RepDihedral.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 layer2/RepDihedral.cpp: In function 'Rep* RepDihedralNew(DistSet*, int)': layer2/RepDihedral.cpp:328:37: warning: variable 'v6' set but not used [-Wunused-but-set-variable] float *v1, *v2, *v3, *v4, *v5, *v6; ^~ i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepCylBond.cpp -o build/temp.linux-i686-2.7/layer2/RepCylBond.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 layer2/RepCylBond.cpp: In function 'Rep* RepCylBondNew(CoordSet*, int)': layer2/RepCylBond.cpp:1981:19: warning: 'bd_transp' may be used uninitialized in this function [-Wmaybe-uninitialized] float bd_alpha = (1.0F - bd_transp); ^~~~~~~~ i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepCartoon.cpp -o build/temp.linux-i686-2.7/layer2/RepCartoon.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 layer2/RepCartoon.cpp: In function 'CGO* GenerateRepCartoonCGO(CoordSet*, ObjectMolecule*, nuc_acid_data*, short int, bool, float*, int, float*, float*, float*, const CCInOut*, int*, int*, int*, float*, float)': layer2/RepCartoon.cpp:2426:3: warning: 'ex1' may be used uninitialized in this function [-Wmaybe-uninitialized] if (ex1) ^~ layer2/RepCartoon.cpp:2372:13: note: 'ex1' was declared here CExtrude *ex1; ^~~ i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepAngle.cpp -o build/temp.linux-i686-2.7/layer2/RepAngle.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectVolume.cpp -o build/temp.linux-i686-2.7/layer2/ObjectVolume.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 layer2/ObjectVolume.cpp: In function 'int ObjectVolumeNewFromPyList(PyMOLGlobals*, PyObject*, ObjectVolume**)': layer2/ObjectVolume.cpp:261:7: warning: variable 'll' set but not used [-Wunused-but-set-variable] int ll; ^~ layer2/ObjectVolume.cpp: In function 'void ObjectVolumeUpdate(ObjectVolume*)': layer2/ObjectVolume.cpp:504:16: warning: variable 'min_ext' set but not used [-Wunused-but-set-variable] float *min_ext, *max_ext; ^~~~~~~ layer2/ObjectVolume.cpp:504:26: warning: variable 'max_ext' set but not used [-Wunused-but-set-variable] float *min_ext, *max_ext; ^~~~~~~ layer2/ObjectVolume.cpp: In function 'ObjectMapState* ObjectVolumeGetMapState(ObjectVolume*)': layer2/ObjectVolume.cpp:84:18: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 230 [-Wformat-truncation=] ObjectMapState * ObjectVolumeGetMapState(ObjectVolume * I) { ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862:0, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer2/ObjectVolume.cpp:20: /usr/include/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 46 and 301 bytes into a destination of size 255 __bos (__s), __fmt, __va_arg_pack ()); ^ layer2/ObjectVolume.cpp: In function 'CField* ObjectVolumeGetField(ObjectVolume*)': layer2/ObjectVolume.cpp:400:10: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 230 [-Wformat-truncation=] CField * ObjectVolumeGetField(ObjectVolume * I) { ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862:0, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer2/ObjectVolume.cpp:20: /usr/include/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 46 and 301 bytes into a destination of size 255 __bos (__s), __fmt, __va_arg_pack ()); ^ layer2/ObjectVolume.cpp: In function 'void ObjectVolumeRender(ObjectVolume*, RenderInfo*)': layer2/ObjectVolume.cpp:721:13: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 230 [-Wformat-truncation=] static void ObjectVolumeRender(ObjectVolume * I, RenderInfo * info) ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862:0, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer2/ObjectVolume.cpp:20: /usr/include/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 46 and 301 bytes into a destination of size 255 __bos (__s), __fmt, __va_arg_pack ()); ^ layer2/ObjectVolume.cpp: In function 'void ObjectVolumeUpdate(ObjectVolume*)': layer2/ObjectVolume.cpp:418:13: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 230 [-Wformat-truncation=] static void ObjectVolumeUpdate(ObjectVolume * I) ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862:0, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer2/ObjectVolume.cpp:20: /usr/include/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 46 and 301 bytes into a destination of size 255 __bos (__s), __fmt, __va_arg_pack ()); ^ i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectSurface.cpp -o build/temp.linux-i686-2.7/layer2/ObjectSurface.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 layer2/ObjectSurface.cpp: In function 'void ObjectSurfaceDump(ObjectSurface*, const char*, int)': layer2/ObjectSurface.cpp:249:6: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 235 [-Wformat-truncation=] void ObjectSurfaceDump(ObjectSurface * I, const char *fname, int state) ^~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862:0, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer2/ObjectSurface.cpp:17: /usr/include/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output 34 or more bytes (assuming 289) into a destination of size 255 __bos (__s), __fmt, __va_arg_pack ()); ^ layer2/ObjectSurface.cpp: In function 'void ObjectSurfaceUpdate(ObjectSurface*)': layer2/ObjectSurface.cpp:472:13: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 223 [-Wformat-truncation=] static void ObjectSurfaceUpdate(ObjectSurface * I) ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862:0, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer2/ObjectSurface.cpp:17: /usr/include/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 53 and 308 bytes into a destination of size 255 __bos (__s), __fmt, __va_arg_pack ()); ^ layer2/ObjectSurface.cpp:472:13: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 229 [-Wformat-truncation=] static void ObjectSurfaceUpdate(ObjectSurface * I) ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862:0, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer2/ObjectSurface.cpp:17: /usr/include/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 30 and 285 bytes into a destination of size 255 __bos (__s), __fmt, __va_arg_pack ()); ^ i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectSlice.cpp -o build/temp.linux-i686-2.7/layer2/ObjectSlice.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 layer2/ObjectSlice.cpp: In function 'int ObjectSliceStateFromPyList(PyMOLGlobals*, ObjectSliceState*, PyObject*)': layer2/ObjectSlice.cpp:97:7: warning: variable 'll' set but not used [-Wunused-but-set-variable] int ll; ^~ layer2/ObjectSlice.cpp: In function 'int ObjectSliceNewFromPyList(PyMOLGlobals*, PyObject*, ObjectSlice**)': layer2/ObjectSlice.cpp:162:7: warning: variable 'll' set but not used [-Wunused-but-set-variable] int ll; ^~ layer2/ObjectSlice.cpp: In function 'void ObjectSliceUpdate(ObjectSlice*)': layer2/ObjectSlice.cpp:669:13: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 225 [-Wformat-truncation=] static void ObjectSliceUpdate(ObjectSlice * I) ^~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862:0, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer2/ObjectSlice.cpp:17: /usr/include/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 51 and 306 bytes into a destination of size 255 __bos (__s), __fmt, __va_arg_pack ()); ^ layer2/ObjectSlice.cpp:669:13: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 231 [-Wformat-truncation=] static void ObjectSliceUpdate(ObjectSlice * I) ^~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862:0, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer2/ObjectSlice.cpp:17: /usr/include/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 28 and 283 bytes into a destination of size 255 __bos (__s), __fmt, __va_arg_pack ()); ^ layer2/ObjectSlice.cpp: In function 'void GenerateOutlineOfSlice(PyMOLGlobals*, ObjectSliceState*, CGO*)': layer2/ObjectSlice.cpp:972:14: warning: 'origin' may be used uninitialized in this function [-Wmaybe-uninitialized] CGOSphere(cgo, origin, 1.f); ~~~~~~~~~^~~~~~~~~~~~~~~~~~ i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectMolecule2.cpp -o build/temp.linux-i686-2.7/layer2/ObjectMolecule2.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 layer2/ObjectMolecule2.cpp: In function 'int ObjectMoleculeBondFromPyList(ObjectMolecule*, PyObject*)': layer2/ObjectMolecule2.cpp:3535:17: warning: unused variable 'G' [-Wunused-variable] PyMOLGlobals *G = I->Obj.G; ^ layer2/ObjectMolecule2.cpp: In function 'int ObjectMoleculeNewFromPyList(PyMOLGlobals*, PyObject*, ObjectMolecule**)': layer2/ObjectMolecule2.cpp:3795:7: warning: variable 'll' set but not used [-Wunused-but-set-variable] int ll; ^~ layer2/ObjectMolecule2.cpp: In function 'int ObjectMoleculeAddPseudoatom(ObjectMolecule*, int, const char*, const char*, const char*, const char*, const char*, const char*, float, int, float, float, const char*, float*, int, int, int, int)': layer2/ObjectMolecule2.cpp:236:5: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 238 [-Wformat-truncation=] int ObjectMoleculeAddPseudoatom(ObjectMolecule * I, int sele_index, const char *name, ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862:0, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer2/ObjectMolecule2.cpp:20: /usr/include/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output 26 or more bytes (assuming 281) into a destination of size 255 __bos (__s), __fmt, __va_arg_pack ()); ^ layer2/ObjectMolecule2.cpp: In function 'int ObjectMoleculeAtomFromPyList(ObjectMolecule*, PyObject*)': layer2/ObjectMolecule2.cpp:3714:3: warning: 'll' may be used uninitialized in this function [-Wmaybe-uninitialized] if (ll == 3){ ^~ i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectMolecule.cpp -o build/temp.linux-i686-2.7/layer2/ObjectMolecule.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 layer2/ObjectMolecule.cpp: In function 'void ObjectMoleculeInvalidateAtomType(ObjectMolecule*, int)': layer2/ObjectMolecule.cpp:11356:16: warning: variable 'a' set but not used [-Wunused-but-set-variable] int ai, atm, a; ^ layer2/ObjectMolecule.cpp: In function 'ObjectMolecule* ObjectMoleculeLoadRSTFile(PyMOLGlobals*, ObjectMolecule*, const char*, int, int, char)': layer2/ObjectMolecule.cpp:1505:10: warning: 'buffer' may be used uninitialized in this function [-Wmaybe-uninitialized] mfree(buffer); layer2/ObjectMolecule.cpp: In function 'void ObjectMoleculeUpdate(ObjectMolecule*)': layer2/ObjectMolecule.cpp:11193:13: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size between 181 and 191 [-Wformat-truncation=] static void ObjectMoleculeUpdate(ObjectMolecule * I) ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862:0, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer2/ObjectMolecule.cpp:16: /usr/include/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 68 and 333 bytes into a destination of size 255 __bos (__s), __fmt, __va_arg_pack ()); ^ layer2/ObjectMolecule.cpp: In function 'int ObjectMoleculeMerge(ObjectMolecule*, AtomInfoType*, CoordSet*, int, int, int)': layer2/ObjectMolecule.cpp:9293:12: warning: 'nAt' may be used uninitialized in this function [-Wmaybe-uninitialized] I->NAtom = nAt; ~~~~~~~~~^~~~~ layer2/ObjectMolecule.cpp: In function 'int ObjectMoleculeAddSeleHydrogens(ObjectMolecule*, int, int)': layer2/ObjectMolecule.cpp:3414:20: warning: 'cs' may be used uninitialized in this function [-Wmaybe-uninitialized] cs->fFree(); ~~~~~~~~~^~ i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectMesh.cpp -o build/temp.linux-i686-2.7/layer2/ObjectMesh.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 layer2/ObjectMesh.cpp: In function 'int ObjectMeshNewFromPyList(PyMOLGlobals*, PyObject*, ObjectMesh**)': layer2/ObjectMesh.cpp:220:7: warning: variable 'll' set but not used [-Wunused-but-set-variable] int ll; ^~ layer2/ObjectMesh.cpp: In function 'void ObjectMeshDump(ObjectMesh*, const char*, int)': layer2/ObjectMesh.cpp:339:6: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 238 [-Wformat-truncation=] void ObjectMeshDump(ObjectMesh * I, const char *fname, int state) ^~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862:0, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer2/ObjectMesh.cpp:17: /usr/include/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output 31 or more bytes (assuming 286) into a destination of size 255 __bos (__s), __fmt, __va_arg_pack ()); ^ layer2/ObjectMesh.cpp: In function 'void ObjectMeshUpdate(ObjectMesh*)': layer2/ObjectMesh.cpp:514:13: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 226 [-Wformat-truncation=] static void ObjectMeshUpdate(ObjectMesh * I) ^~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862:0, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer2/ObjectMesh.cpp:17: /usr/include/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 50 and 305 bytes into a destination of size 255 __bos (__s), __fmt, __va_arg_pack ()); ^ layer2/ObjectMesh.cpp:514:13: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 232 [-Wformat-truncation=] static void ObjectMeshUpdate(ObjectMesh * I) ^~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862:0, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer2/ObjectMesh.cpp:17: /usr/include/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 27 and 282 bytes into a destination of size 255 __bos (__s), __fmt, __va_arg_pack ()); ^ i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectMap.cpp -o build/temp.linux-i686-2.7/layer2/ObjectMap.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 layer2/ObjectMap.cpp: In function 'int ObjectMapNewFromPyList(PyMOLGlobals*, PyObject*, ObjectMap**)': layer2/ObjectMap.cpp:1570:7: warning: variable 'll' set but not used [-Wunused-but-set-variable] int ll; ^~ layer2/ObjectMap.cpp: In function 'int ObjectMapCCP4StrToMap(ObjectMap*, char*, int, int, int)': layer2/ObjectMap.cpp:2324:12: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(bytes < 256 * sizeof(int)) { ~~~~~~^~~~~~~~~~~~~~~ layer2/ObjectMap.cpp: In function 'int ObjectMapNumPyArrayToMapState(PyMOLGlobals*, ObjectMapState*, PyObject*, int)': layer2/ObjectMap.cpp:5511:15: warning: 'dens' may be used uninitialized in this function [-Wmaybe-uninitialized] float v[3], dens, maxd, mind; ^~~~ i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectGroup.cpp -o build/temp.linux-i686-2.7/layer2/ObjectGroup.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectGadgetRamp.cpp -o build/temp.linux-i686-2.7/layer2/ObjectGadgetRamp.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectGadget.cpp -o build/temp.linux-i686-2.7/layer2/ObjectGadget.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 layer2/ObjectGadget.cpp: In function 'int ObjectGadgetInitFromPyList(PyMOLGlobals*, PyObject*, ObjectGadget*, int)': layer2/ObjectGadget.cpp:299:7: warning: variable 'll' set but not used [-Wunused-but-set-variable] int ll; ^~ i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectDist.cpp -o build/temp.linux-i686-2.7/layer2/ObjectDist.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 layer2/ObjectDist.cpp: In function 'ObjectDist* ObjectDistNewFromAngleSele(PyMOLGlobals*, ObjectDist*, int, int, int, int, int, float*, int, int)': layer2/ObjectDist.cpp:679:11: warning: 'state1' may be used uninitialized in this function [-Wmaybe-uninitialized] state1--; ~~~~~~^~ layer2/ObjectDist.cpp:725:39: warning: 'state2' may be used uninitialized in this function [-Wmaybe-uninitialized] I->DSet[a] = SelectorGetAngleSet(G, I->DSet[a], sele1, state1, sele2, ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ state2, sele3, state3, mode, &angle_sum, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &angle_cnt); ~~~~~~~~~~~ layer2/ObjectDist.cpp:725:39: warning: 'state3' may be used uninitialized in this function [-Wmaybe-uninitialized] layer2/ObjectDist.cpp: In function 'ObjectDist* ObjectDistNewFromDihedralSele(PyMOLGlobals*, ObjectDist*, int, int, int, int, int, int, float*, int, int)': layer2/ObjectDist.cpp:801:11: warning: 'state1' may be used uninitialized in this function [-Wmaybe-uninitialized] state1--; ~~~~~~^~ layer2/ObjectDist.cpp:847:42: warning: 'state2' may be used uninitialized in this function [-Wmaybe-uninitialized] I->DSet[a] = SelectorGetDihedralSet(G, I->DSet[a], sele1, state1, sele2, ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ state2, sele3, state3, sele4, state4, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mode, &angle_sum, &angle_cnt); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer2/ObjectDist.cpp:847:42: warning: 'state3' may be used uninitialized in this function [-Wmaybe-uninitialized] layer2/ObjectDist.cpp:847:42: warning: 'state4' may be used uninitialized in this function [-Wmaybe-uninitialized] i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectCallback.cpp -o build/temp.linux-i686-2.7/layer2/ObjectCallback.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 layer2/ObjectCallback.cpp: In function 'int ObjectCallbackNewFromPyList(PyMOLGlobals*, PyObject*, ObjectCallback**)': layer2/ObjectCallback.cpp:276:7: warning: variable 'll' set but not used [-Wunused-but-set-variable] int ll; ^~ i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectCGO.cpp -o build/temp.linux-i686-2.7/layer2/ObjectCGO.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectAlignment.cpp -o build/temp.linux-i686-2.7/layer2/ObjectAlignment.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/MolV3000.cpp -o build/temp.linux-i686-2.7/layer2/MolV3000.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/Mol2Typing.cpp -o build/temp.linux-i686-2.7/layer2/Mol2Typing.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/MmtfMoleculeReader.cpp -o build/temp.linux-i686-2.7/layer2/MmtfMoleculeReader.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 layer2/MmtfMoleculeReader.cpp: In function 'ObjectMolecule* ObjectMoleculeReadMmtfStr(PyMOLGlobals*, ObjectMolecule*, const char*, int, int, int, int, int, int)': layer2/MmtfMoleculeReader.cpp:215:47: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int l = 0, offset = atomIndex; l < group->bondAtomListCount / 2; ++l) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer2/MmtfMoleculeReader.cpp:271:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int l = 0; l < container->bondAtomListCount / 2; ++l) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/MmodTyping.cpp -o build/temp.linux-i686-2.7/layer2/MmodTyping.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/GadgetSet.cpp -o build/temp.linux-i686-2.7/layer2/GadgetSet.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 layer2/GadgetSet.cpp: In function 'int GadgetSetFromPyList(PyMOLGlobals*, PyObject*, GadgetSet**, int)': layer2/GadgetSet.cpp:90:7: warning: variable 'll' set but not used [-Wunused-but-set-variable] int ll; ^~ layer2/GadgetSet.cpp: In member function 'void GadgetSet::render(RenderInfo*)': layer2/GadgetSet.cpp:303:13: warning: variable 'ok' set but not used [-Wunused-but-set-variable] int ok = true; ^~ layer2/GadgetSet.cpp:290:9: warning: variable 'use_shader' set but not used [-Wunused-but-set-variable] short use_shader; ^~~~~~~~~~ i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/DistSet.cpp -o build/temp.linux-i686-2.7/layer2/DistSet.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 layer2/DistSet.cpp: In function 'int DistSetMoveWithObject(DistSet*, ObjectMolecule*)': layer2/DistSet.cpp:148:1: warning: label 'ok_except1' defined but not used [-Wunused-label] ok_except1: ^~~~~~~~~~ i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/CoordSet.cpp -o build/temp.linux-i686-2.7/layer2/CoordSet.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 layer2/CoordSet.cpp: In function 'int CoordSetFromPyList(PyMOLGlobals*, PyObject*, CoordSet**)': layer2/CoordSet.cpp:168:7: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if(I) ^~ layer2/CoordSet.cpp:170:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' *cs = NULL; ^ layer2/CoordSet.cpp: In function 'void CoordSetAtomToPDBStrVLA(PyMOLGlobals*, char**, int*, const AtomInfoType*, const float*, int, const PDBInfoRec*, const double*)': layer2/CoordSet.cpp:759:6: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] void CoordSetAtomToPDBStrVLA(PyMOLGlobals * G, char **charVLA, int *c, ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862:0, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer2/CoordSet.cpp:17: /usr/include/bits/stdio2.h:34:43: note: '__builtin___sprintf_chk' output between 2 and 6 bytes into a destination of size 5 __bos (__s), __fmt, __va_arg_pack ()); ^ layer2/CoordSet.cpp: In member function 'void CoordSet::update(int)': layer2/CoordSet.cpp:1174:6: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 223 [-Wformat-truncation=] void CoordSet::update(int state) ^~~~~~~~ i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/CifMoleculeReader.cpp -o build/temp.linux-i686-2.7/layer2/CifMoleculeReader.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 layer2/CifMoleculeReader.cpp: In member function 'void seqvec_t::set(int, const char*)': layer2/CifMoleculeReader.cpp:89:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (i > size()) ~~^~~~~~~~ layer2/CifMoleculeReader.cpp: In member function 'const char* seqvec_t::get(int) const': layer2/CifMoleculeReader.cpp:95:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (i < 1 || i > size()) ~~^~~~~~~~ layer2/CifMoleculeReader.cpp: In function 'CoordSet** read_pdbx_struct_assembly(PyMOLGlobals*, const cif_data*, const AtomInfoType*, const CoordSet*, const char*)': layer2/CifMoleculeReader.cpp:742:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] while (j < c_src_len * c_it->size()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/CifFile.cpp -o build/temp.linux-i686-2.7/layer2/CifFile.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/BondTypeHistory.cpp -o build/temp.linux-i686-2.7/layer2/BondTypeHistory.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/AtomInfoHistory.cpp -o build/temp.linux-i686-2.7/layer2/AtomInfoHistory.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/AtomInfo.cpp -o build/temp.linux-i686-2.7/layer2/AtomInfo.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 layer2/AtomInfo.cpp: In function 'bool AtomResiFromResv(char*, size_t, int, char)': layer2/AtomInfo.cpp:848:56: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] return snprintf(resi, size, "%d%c", resv, inscode) < size; ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ layer2/AtomInfo.cpp:849:43: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] return snprintf(resi, size, "%d", resv) < size; ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/AssemblyHelpers.cpp -o build/temp.linux-i686-2.7/layer2/AssemblyHelpers.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer3/Selector.cpp -o build/temp.linux-i686-2.7/layer3/Selector.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 layer3/Selector.cpp: In member function 'virtual bool SelectorAtomIterator::next()': layer3/Selector.cpp:210:13: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ((++a) >= selector->NAtom) ~~~~~~^~~~~~~~~~~~~~~~~~ layer3/Selector.cpp: In function 'int SelectorClassifyAtoms(PyMOLGlobals*, int, int, ObjectMolecule*)': layer3/Selector.cpp:1202:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] while(a < I->NAtom) { ~~^~~~~~~~~~ layer3/Selector.cpp:1226:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] while(a1 < I->NAtom) { ~~~^~~~~~~~~~ layer3/Selector.cpp: In function 'void SelectorComputeFragPos(PyMOLGlobals*, ObjectMolecule*, int, int, char*, float**)': layer3/Selector.cpp:1492:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(at = 0; at < I->NAtom; at++) { ~~~^~~~~~~~~~ layer3/Selector.cpp: In function 'int SelectorAssignSS(PyMOLGlobals*, int, int, int, int, ObjectMolecule*, int)': layer3/Selector.cpp:1931:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(a = cNDummyAtoms; a < I->NAtom; a++) { ~~^~~~~~~~~~ layer3/Selector.cpp:1959:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] while(a1 < I->NAtom) { ~~~^~~~~~~~~~ layer3/Selector.cpp:2156:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(a = cNDummyAtoms; a < I->NAtom; a++) { ~~^~~~~~~~~~ layer3/Selector.cpp:2196:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(aa = 0; aa < I->NAtom; aa++) { /* first, clear flags */ ~~~^~~~~~~~~~ layer3/Selector.cpp: In function 'PyObject* SelectorColorectionGet(PyMOLGlobals*, const char*)': layer3/Selector.cpp:2987:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(b = 0; b < n_used; b++) { ~~^~~~~~~~ layer3/Selector.cpp:3003:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(a = 0; a < n_used; a++) { ~~^~~~~~~~ layer3/Selector.cpp:3022:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(b = 0; b < n_used; b++) { ~~^~~~~~~~ layer3/Selector.cpp: In function 'int SelectorColorectionApply(PyMOLGlobals*, PyObject*, const char*)': layer3/Selector.cpp:3082:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(b = 0; b < n_used; b++) { /* update selection indices */ ~~^~~~~~~~ layer3/Selector.cpp:3087:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(a = cNDummyAtoms; a < I->NAtom; a++) { ~~^~~~~~~~~~ layer3/Selector.cpp:3091:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(b = 0; b < n_used; b++) { ~~^~~~~~~~ layer3/Selector.cpp: In function 'PyObject* SelectorAsPyList(PyMOLGlobals*, int)': layer3/Selector.cpp:3274:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(a = cNDummyAtoms; a < I->NAtom; a++) { ~~^~~~~~~~~~ layer3/Selector.cpp: In function 'int SelectorCountStates(PyMOLGlobals*, int)': layer3/Selector.cpp:3797:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(a = cNDummyAtoms; a < I->NAtom; a++) { ~~^~~~~~~~~~ layer3/Selector.cpp: In function 'int SelectorCheckIntersection(PyMOLGlobals*, int, int)': layer3/Selector.cpp:3826:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(a = cNDummyAtoms; a < I->NAtom; a++) { ~~^~~~~~~~~~ layer3/Selector.cpp: In function 'int SelectorCountAtoms(PyMOLGlobals*, int, int)': layer3/Selector.cpp:3849:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(a = cNDummyAtoms; a < I->NAtom; a++) { ~~^~~~~~~~~~ layer3/Selector.cpp: In function 'void SelectorSetDeleteFlagOnSelectionInObject(PyMOLGlobals*, int, ObjectMolecule*, signed char)': layer3/Selector.cpp:3869:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(a = cNDummyAtoms; a < I->NAtom; a++) { ~~^~~~~~~~~~ layer3/Selector.cpp: In function 'int* SelectorGetIndexVLAImpl(PyMOLGlobals*, CSelector*, int)': layer3/Selector.cpp:3957:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(a = cNDummyAtoms; a < I->NAtom; a++) { ~~^~~~~~~~~~ layer3/Selector.cpp: In function 'void SelectorLogSele(PyMOLGlobals*, const char*)': layer3/Selector.cpp:4017:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(a = cNDummyAtoms; a < I->NAtom; a++) { ~~^~~~~~~~~~ layer3/Selector.cpp: In function 'ObjectMolecule* SelectorGetSingleObjectMolecule(PyMOLGlobals*, int)': layer3/Selector.cpp:4200:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(a = 0; a < I->NAtom; a++) { ~~^~~~~~~~~~ layer3/Selector.cpp: In function 'ObjectMolecule* SelectorGetFirstObjectMolecule(PyMOLGlobals*, int)': layer3/Selector.cpp:4230:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(a = 0; a < I->NAtom; a++) { ~~^~~~~~~~~~ layer3/Selector.cpp: In function 'ObjectMolecule** SelectorGetObjectMoleculeVLA(PyMOLGlobals*, int)': layer3/Selector.cpp:4254:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(a = cNDummyAtoms; a < I->NAtom; a++) { ~~^~~~~~~~~~ layer3/Selector.cpp: In function 'int SelectorSubdivide(PyMOLGlobals*, const char*, int, int, int, int, const char*, const char*, int*)': layer3/Selector.cpp:4699:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(a = 0; a < I->NAtom; a++) ~~^~~~~~~~~~ layer3/Selector.cpp: In function 'int SelectorGetSeleNCSet(PyMOLGlobals*, int)': layer3/Selector.cpp:5065:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(a = cNDummyAtoms; a < I->NAtom; a++) { ~~^~~~~~~~~~ layer3/Selector.cpp: In function 'int SelectorGetArrayNCSet(PyMOLGlobals*, int*, int)': layer3/Selector.cpp:5093:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(a = start; a < I->NAtom; a++) { ~~^~~~~~~~~~ layer3/Selector.cpp: In function 'int SelectorGetInterstateVLA(PyMOLGlobals*, int, int, int, int, float, int**)': layer3/Selector.cpp:5196:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(a = 0; a < I->NAtom; a++) { ~~^~~~~~~~~~ layer3/Selector.cpp:5223:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(a = cNDummyAtoms; a < I->NAtom; a++) { ~~^~~~~~~~~~ layer3/Selector.cpp: In function 'int SelectorMapMaskVDW(PyMOLGlobals*, int, ObjectMapState*, float, int)': layer3/Selector.cpp:5284:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(a = 0; a < I->NAtom; a++) { ~~^~~~~~~~~~ layer3/Selector.cpp: In function 'int SelectorMapGaussian(PyMOLGlobals*, int, ObjectMapState*, float, int, int, int, int, float)': layer3/Selector.cpp:5651:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(a = 0; a < I->NAtom; a++) { ~~^~~~~~~~~~ layer3/Selector.cpp:5695:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(a = 0; a < I->NAtom; a++) { ~~^~~~~~~~~~ layer3/Selector.cpp: In function 'int SelectorMapCoulomb(PyMOLGlobals*, int, ObjectMapState*, float, int, int, int, float)': layer3/Selector.cpp:5915:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(a = cNDummyAtoms; a < I->NAtom; a++) { ~~^~~~~~~~~~ layer3/Selector.cpp: In function 'int SelectorGetPDB(PyMOLGlobals*, char**, int, int, int, int, PDBInfoRec*, int*, double*, ObjectMolecule*)': layer3/Selector.cpp:6159:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(a = cNDummyAtoms; a < I->NAtom; a++) { ~~^~~~~~~~~~ layer3/Selector.cpp:6241:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(a = cNDummyModels; a < I->NModel; a++) { ~~^~~~~~~~~~~ layer3/Selector.cpp: In function 'int SelectorCreateObjectMolecule(PyMOLGlobals*, int, const char*, int, int, int, int, int, int, int)': layer3/Selector.cpp:6861:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(a = cNDummyAtoms; a < I->NAtom; a++) { ~~^~~~~~~~~~ layer3/Selector.cpp:6883:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(a = cNDummyAtoms; a < I->NAtom; a++) { ~~^~~~~~~~~~ layer3/Selector.cpp:6902:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(a = cNDummyModels; a < I->NModel; a++) { /* find bonds wholly contained in the selection */ ~~^~~~~~~~~~~ layer3/Selector.cpp:6929:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(a = cNDummyAtoms; a < I->NAtom; a++) { ~~^~~~~~~~~~ layer3/Selector.cpp:6975:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(a = cNDummyAtoms; a < I->NAtom; a++) { ~~^~~~~~~~~~ layer3/Selector.cpp:7003:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(a = cNDummyAtoms; a < I->NAtom; a++) /* any selected atoms in this state? */ ~~^~~~~~~~~~ layer3/Selector.cpp: In function 'int SelectorEmbedSelection(PyMOLGlobals*, int*, const char*, ObjectMolecule*, int, int)': layer3/Selector.cpp:7449:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(a = start; a < I->NAtom; a++) { ~~^~~~~~~~~~ layer3/Selector.cpp: In function 'int* SelectorApplyMultipick(PyMOLGlobals*, Multipick*)': layer3/Selector.cpp:7541:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(a = 0; a < I->NAtom; a++) ~~^~~~~~~~~~ layer3/Selector.cpp: In function 'int* SelectorSelectFromTagDict(PyMOLGlobals*, OVOneToAny*)': layer3/Selector.cpp:7570:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(a = cNDummyAtoms; a < I->NAtom; a++) { ~~^~~~~~~~~~ layer3/Selector.cpp: In function 'int SelectorModulate1(PyMOLGlobals*, EvalElem*, int)': layer3/Selector.cpp:8177:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(a = 0; a < I->NAtom; a++) ~~^~~~~~~~~~ layer3/Selector.cpp:8189:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(a = 0; a < I->NAtom; a++) { ~~^~~~~~~~~~ layer3/Selector.cpp:8211:38: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(a = 0; ok && a < I->NAtom; a++) { ~~^~~~~~~~~~ layer3/Selector.cpp:8262:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(a = cNDummyAtoms; a < I->NAtom; a++) { ~~^~~~~~~~~~ layer3/Selector.cpp:8291:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(a = 0; a < I->NAtom; a++) { ~~^~~~~~~~~~ layer3/Selector.cpp:8301:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(a = 0; a < I->NAtom; a++) { ~~^~~~~~~~~~ layer3/Selector.cpp:8326:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(a = 0; a < I->NAtom; a++) { ~~^~~~~~~~~~ layer3/Selector.cpp:8374:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(a = cNDummyAtoms; a < I->NAtom; a++) ~~^~~~~~~~~~ layer3/Selector.cpp: In function 'int SelectorSelect0(PyMOLGlobals*, EvalElem*)': layer3/Selector.cpp:8411:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(a = cNDummyAtoms; a < I->NAtom; a++) { ~~^~~~~~~~~~ layer3/Selector.cpp:8423:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(a = cNDummyAtoms; a < I->NAtom; a++) ~~^~~~~~~~~~ layer3/Selector.cpp:8428:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(a = cNDummyAtoms; a < I->NAtom; a++) ~~^~~~~~~~~~ layer3/Selector.cpp:8435:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(a = cNDummyAtoms; a < I->NAtom; a++) ~~^~~~~~~~~~ layer3/Selector.cpp:8439:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(a = cNDummyAtoms; a < I->NAtom; a++) ~~^~~~~~~~~~ layer3/Selector.cpp:8443:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(a = cNDummyAtoms; a < I->NAtom; a++) ~~^~~~~~~~~~ layer3/Selector.cpp:8447:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(a = cNDummyAtoms; a < I->NAtom; a++) ~~^~~~~~~~~~ layer3/Selector.cpp:8451:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(a = cNDummyAtoms; a < I->NAtom; a++) { ~~^~~~~~~~~~ layer3/Selector.cpp:8467:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(a = cNDummyAtoms; a < I->NAtom; a++) { ~~^~~~~~~~~~ layer3/Selector.cpp:8484:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(a = cNDummyAtoms; a < I->NAtom; a++) ~~^~~~~~~~~~ layer3/Selector.cpp:8489:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(a = cNDummyAtoms; a < I->NAtom; a++) ~~^~~~~~~~~~ layer3/Selector.cpp:8494:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(a = cNDummyAtoms; a < I->NAtom; a++) ~~^~~~~~~~~~ layer3/Selector.cpp:8499:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(a = cNDummyAtoms; a < I->NAtom; a++) ~~^~~~~~~~~~ layer3/Selector.cpp:8504:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(a = cNDummyAtoms; a < I->NAtom; a++) ~~^~~~~~~~~~ layer3/Selector.cpp:8508:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(a = cNDummyAtoms; a < I->NAtom; a++) ~~^~~~~~~~~~ layer3/Selector.cpp:8512:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(a = cNDummyAtoms; a < I->NAtom; a++) ~~^~~~~~~~~~ layer3/Selector.cpp:8517:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(a = cNDummyAtoms; a < I->NAtom; a++) ~~^~~~~~~~~~ layer3/Selector.cpp:8522:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(a = cNDummyAtoms; a < I->NAtom; a++) ~~^~~~~~~~~~ layer3/Selector.cpp:8532:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(a = cNDummyAtoms; a < I->NAtom; a++) { ~~^~~~~~~~~~ layer3/Selector.cpp:8561:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(a = cNDummyAtoms; a < I->NAtom; a++) { ~~^~~~~~~~~~ layer3/Selector.cpp:8567:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(a = 0; a < I->NAtom; a++) { ~~^~~~~~~~~~ layer3/Selector.cpp:8576:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(a = 0; a < I->NAtom; a++) { ~~^~~~~~~~~~ layer3/Selector.cpp:8588:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(a = cNDummyAtoms; a < I->NAtom; a++) { ~~^~~~~~~~~~ layer3/Selector.cpp:8609:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(a = cNDummyAtoms; a < I->NAtom; a++) { ~~^~~~~~~~~~ layer3/Selector.cpp: In function 'int SelectorSelect1(PyMOLGlobals*, EvalElem*, int)': layer3/Selector.cpp:8848:13: warning: variable 'prevmodel' set but not used [-Wunused-but-set-variable] int prevmodel; ^~~~~~~~~ layer3/Selector.cpp:8895:11: warning: variable 'prevmodel' set but not used [-Wunused-but-set-variable] int prevmodel; ^~~~~~~~~ layer3/Selector.cpp:9353:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(a = cNDummyModels; a < I->NModel; a++) ~~^~~~~~~~~~~ layer3/Selector.cpp:9363:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] else if(model > I->NModel) ~~~~~~^~~~~~~~~~~ layer3/Selector.cpp: In function 'int SelectorSelect2(PyMOLGlobals*, EvalElem*, int)': layer3/Selector.cpp:9447:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(a = cNDummyAtoms; a < I->NAtom; a++) ~~^~~~~~~~~~ layer3/Selector.cpp:9451:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(a = cNDummyAtoms; a < I->NAtom; a++) { ~~^~~~~~~~~~ layer3/Selector.cpp:9499:37: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(a = cNDummyAtoms; a < I->NAtom; a++) { ~~^~~~~~~~~~ layer3/Selector.cpp:9510:37: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(a = cNDummyAtoms; a < I->NAtom; a++) { ~~^~~~~~~~~~ layer3/Selector.cpp:9521:37: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(a = cNDummyAtoms; a < I->NAtom; a++) { ~~^~~~~~~~~~ layer3/Selector.cpp:9532:37: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(a = cNDummyAtoms; a < I->NAtom; a++) { ~~^~~~~~~~~~ layer3/Selector.cpp:9547:37: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(a = cNDummyAtoms; a < I->NAtom; a++) { ~~^~~~~~~~~~ layer3/Selector.cpp:9558:37: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(a = cNDummyAtoms; a < I->NAtom; a++) { ~~^~~~~~~~~~ layer3/Selector.cpp:9569:37: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(a = cNDummyAtoms; a < I->NAtom; a++) { ~~^~~~~~~~~~ layer3/Selector.cpp:9580:37: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(a = cNDummyAtoms; a < I->NAtom; a++) { ~~^~~~~~~~~~ layer3/Selector.cpp:9595:37: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(a = cNDummyAtoms; a < I->NAtom; a++) { ~~^~~~~~~~~~ layer3/Selector.cpp:9606:37: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(a = cNDummyAtoms; a < I->NAtom; a++) { ~~^~~~~~~~~~ layer3/Selector.cpp:9617:37: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(a = cNDummyAtoms; a < I->NAtom; a++) { ~~^~~~~~~~~~ layer3/Selector.cpp:9628:37: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(a = cNDummyAtoms; a < I->NAtom; a++) { ~~^~~~~~~~~~ layer3/Selector.cpp: In member function 'void SelectorRingFinder::recursion(int, int)': layer3/Selector.cpp:9684:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] } else if (depth < indices.size() - 1) { ~~~~~~^~~~~~~~~~~~~~~~~~~~ layer3/Selector.cpp: In function 'int SelectorLogic1(PyMOLGlobals*, EvalElem*, int)': layer3/Selector.cpp:10155:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(a = 0; a < I->NAtom; a++) { ~~^~~~~~~~~~ layer3/Selector.cpp:10187:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(a = 0; a < I->NAtom; a++) { ~~^~~~~~~~~~ layer3/Selector.cpp: In function 'int SelectorOperator22(PyMOLGlobals*, EvalElem*, int)': layer3/Selector.cpp:10455:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(a = 0; a < I->NAtom; a++) { ~~^~~~~~~~~~ layer3/Selector.cpp:10463:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(a = 0; a < I->NAtom; a++) { ~~^~~~~~~~~~ layer3/Selector.cpp:10485:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(a = 0; a < I->NAtom; a++) { ~~^~~~~~~~~~ layer3/Selector.cpp:10524:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(a = 0; a < I->NAtom; a++) { ~~^~~~~~~~~~ layer3/Selector.cpp:10529:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(a = cNDummyAtoms; a < I->NAtom; a++) ~~^~~~~~~~~~ layer3/Selector.cpp: In function 'char (* SelectorParse(PyMOLGlobals*, const char*))[1024]': layer3/Selector.cpp:11118:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if((q - q_base) >= sizeof(SelectorWordType)) { ~~~~~~~~~~~~~^~~~~~~~~~ layer3/Selector.cpp: In function 'DistSet* SelectorGetDistSet(PyMOLGlobals*, DistSet*, int, int, int, int, int, float, float*)': layer3/Selector.cpp:11406:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(a = cNDummyAtoms; a < I->NAtom; a++) { ~~^~~~~~~~~~ layer3/Selector.cpp: In function 'DistSet* SelectorGetAngleSet(PyMOLGlobals*, DistSet*, int, int, int, int, int, int, int, float*, int*)': layer3/Selector.cpp:11680:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(a = cNDummyAtoms; a < I->NAtom; a++) { ~~^~~~~~~~~~ layer3/Selector.cpp:11693:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(a = cNDummyAtoms; a < I->NAtom; a++) { ~~^~~~~~~~~~ layer3/Selector.cpp:11721:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(a = cNDummyAtoms; a < I->NAtom; a++) { ~~^~~~~~~~~~ layer3/Selector.cpp: In function 'DistSet* SelectorGetDihedralSet(PyMOLGlobals*, DistSet*, int, int, int, int, int, int, int, int, int, float*, int*)': layer3/Selector.cpp:11929:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(a = cNDummyAtoms; a < I->NAtom; a++) { ~~^~~~~~~~~~ layer3/Selector.cpp:11981:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(a = cNDummyAtoms; a < I->NAtom; a++) { ~~^~~~~~~~~~ layer3/Selector.cpp:12027:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(a = cNDummyAtoms; a < I->NAtom; a++) { ~~^~~~~~~~~~ layer3/Selector.cpp: In function 'int SelectorSelect1(PyMOLGlobals*, EvalElem*, int)': layer3/Selector.cpp:8625:12: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 223 [-Wformat-truncation=] static int SelectorSelect1(PyMOLGlobals * G, EvalElem * base, int quiet) ^~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862:0, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Selector.cpp:19: /usr/include/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 36 and 1059 bytes into a destination of size 255 __bos (__s), __fmt, __va_arg_pack ()); ^ layer3/Selector.cpp: In function 'int SelectorAssignSS(PyMOLGlobals*, int, int, int, int, ObjectMolecule*, int)': layer3/Selector.cpp:1859:5: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 207 [-Wformat-truncation=] int SelectorAssignSS(PyMOLGlobals * G, int target, int present, ^~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862:0, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Selector.cpp:19: /usr/include/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output 59 or more bytes (assuming 314) into a destination of size 255 __bos (__s), __fmt, __va_arg_pack ()); ^ i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer3/Seeker.cpp -o build/temp.linux-i686-2.7/layer3/Seeker.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 layer3/Seeker.cpp: In function 'void SeekerRefresh(PyMOLGlobals*, CSeqRow*)': layer3/Seeker.cpp:509:13: warning: variable 'not_selected' set but not used [-Wunused-but-set-variable] int not_selected; ^~~~~~~~~~~~ layer3/Seeker.cpp: In function 'void SeekerUpdate(PyMOLGlobals*)': layer3/Seeker.cpp:1353:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(row->len < min_pad) { ~~~~~~~~~^~~~~~~~~ layer3/Seeker.cpp:1389:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(row->len < min_pad) { ~~~~~~~~~^~~~~~~~~ layer3/Seeker.cpp:2077:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(row->ext_len < stop) ~~~~~~~~~~~~~^~~~~~ i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer3/PlugIOManager.cpp -o build/temp.linux-i686-2.7/layer3/PlugIOManager.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 layer3/PlugIOManager.cpp: In function 'CObject* PlugIOManagerLoad(PyMOLGlobals*, CObject**, const char*, int, int, const char*)': layer3/PlugIOManager.cpp:808:11: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 200 [-Wformat-truncation=] CObject * PlugIOManagerLoad(PyMOLGlobals * G, CObject ** obj_ptr, ^~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862:0, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/PlugIOManager.cpp:17: /usr/include/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 58 and 313 bytes into a destination of size 255 __bos (__s), __fmt, __va_arg_pack ()); ^ i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer3/MovieScene.cpp -o build/temp.linux-i686-2.7/layer3/MovieScene.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer3/MoleculeExporter.cpp -o build/temp.linux-i686-2.7/layer3/MoleculeExporter.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer3/Executive.cpp -o build/temp.linux-i686-2.7/layer3/Executive.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 layer3/Executive.cpp: In function 'void ExecutiveSymExp(PyMOLGlobals*, const char*, const char*, const char*, float, int, int)': layer3/Executive.cpp:14681:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(a = 0; a < nsymmat; a++) { ~~^~~~~~~~~ layer3/Executive.cpp: In function 'void ExecutiveRemoveAtoms(PyMOLGlobals*, const char*, int)': layer3/Executive.cpp:9525:6: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size between 207 and 217 [-Wformat-truncation=] void ExecutiveRemoveAtoms(PyMOLGlobals * G, const char *s1, int quiet) ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862:0, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 42 and 307 bytes into a destination of size 255 __bos (__s), __fmt, __va_arg_pack ()); ^ layer3/Executive.cpp: In function 'int ExecutiveBond(PyMOLGlobals*, const char*, const char*, int, int, int)': layer3/Executive.cpp:9842:5: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size between 214 and 224 [-Wformat-truncation=] int ExecutiveBond(PyMOLGlobals * G, const char *s1, const char *s2, int order, int mode, int quiet) ^~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862:0, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 35 and 300 bytes into a destination of size 255 __bos (__s), __fmt, __va_arg_pack ()); ^ layer3/Executive.cpp:9842:5: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size between 200 and 210 [-Wformat-truncation=] int ExecutiveBond(PyMOLGlobals * G, const char *s1, const char *s2, int order, int mode, int quiet) ^~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862:0, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 49 and 314 bytes into a destination of size 255 __bos (__s), __fmt, __va_arg_pack ()); ^ layer3/Executive.cpp:9842:5: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size between 208 and 218 [-Wformat-truncation=] int ExecutiveBond(PyMOLGlobals * G, const char *s1, const char *s2, int order, int mode, int quiet) ^~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862:0, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 41 and 306 bytes into a destination of size 255 __bos (__s), __fmt, __va_arg_pack ()); ^ layer3/Executive.cpp: In function 'int ExecutiveSetBondSettingFromString(PyMOLGlobals*, int, const char*, const char*, const char*, int, int, int)': layer3/Executive.cpp:12003:5: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size between 208 and 217 [-Wformat-truncation=] int ExecutiveSetBondSettingFromString(PyMOLGlobals * G, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862:0, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output 42 or more bytes (assuming 306) into a destination of size 255 __bos (__s), __fmt, __va_arg_pack ()); ^ layer3/Executive.cpp: In function 'PyObject* ExecutiveGetBondSetting(PyMOLGlobals*, int, char*, const char*, int, int, int)': layer3/Executive.cpp:12131:11: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size between 212 and 221 [-Wformat-truncation=] PyObject *ExecutiveGetBondSetting(PyMOLGlobals * G, int index, ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862:0, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output 38 or more bytes (assuming 302) into a destination of size 255 __bos (__s), __fmt, __va_arg_pack ()); ^ layer3/Executive.cpp: In function 'int ExecutiveSetBondSetting(PyMOLGlobals*, int, PyObject*, const char*, const char*, int, int, int)': layer3/Executive.cpp:12211:5: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size between 208 and 217 [-Wformat-truncation=] int ExecutiveSetBondSetting(PyMOLGlobals * G, int index, PyObject * tuple, ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862:0, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output 42 or more bytes (assuming 306) into a destination of size 255 __bos (__s), __fmt, __va_arg_pack ()); ^ layer3/Executive.cpp: In function 'int ExecutiveUnsetBondSetting(PyMOLGlobals*, int, const char*, const char*, int, int, int)': layer3/Executive.cpp:12329:5: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size between 206 and 215 [-Wformat-truncation=] int ExecutiveUnsetBondSetting(PyMOLGlobals * G, int index, const char *s1, const char *s2, ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862:0, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output 44 or more bytes (assuming 308) into a destination of size 255 __bos (__s), __fmt, __va_arg_pack ()); ^ layer3/Executive.cpp: In function 'int ExecutiveSetSetting(PyMOLGlobals*, int, PyObject*, const char*, int, int, int)': layer3/Executive.cpp:12392:5: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 217 [-Wformat-truncation=] int ExecutiveSetSetting(PyMOLGlobals * G, int index, PyObject * tuple, const char *sele, ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862:0, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output 42 or more bytes (assuming 297) into a destination of size 255 __bos (__s), __fmt, __va_arg_pack ()); ^ layer3/Executive.cpp:12392:5: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 217 [-Wformat-truncation=] int ExecutiveSetSetting(PyMOLGlobals * G, int index, PyObject * tuple, const char *sele, ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862:0, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output 42 or more bytes (assuming 297) into a destination of size 255 __bos (__s), __fmt, __va_arg_pack ()); ^ layer3/Executive.cpp:12392:5: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 225 [-Wformat-truncation=] int ExecutiveSetSetting(PyMOLGlobals * G, int index, PyObject * tuple, const char *sele, ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862:0, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output 34 or more bytes (assuming 289) into a destination of size 255 __bos (__s), __fmt, __va_arg_pack ()); ^ layer3/Executive.cpp:12392:5: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 225 [-Wformat-truncation=] int ExecutiveSetSetting(PyMOLGlobals * G, int index, PyObject * tuple, const char *sele, ^~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:12392:5: note: directive argument in the range [1, 2147483647] In file included from /usr/include/stdio.h:862:0, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output 43 or more bytes (assuming 307) into a destination of size 255 __bos (__s), __fmt, __va_arg_pack ()); ^ layer3/Executive.cpp: In function 'int ExecutiveSetSettingFromString(PyMOLGlobals*, int, const char*, const char*, int, int, int)': layer3/Executive.cpp:12701:5: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 217 [-Wformat-truncation=] int ExecutiveSetSettingFromString(PyMOLGlobals * G, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862:0, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output 42 or more bytes (assuming 297) into a destination of size 255 __bos (__s), __fmt, __va_arg_pack ()); ^ layer3/Executive.cpp:12701:5: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 225 [-Wformat-truncation=] int ExecutiveSetSettingFromString(PyMOLGlobals * G, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862:0, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output 34 or more bytes (assuming 289) into a destination of size 255 __bos (__s), __fmt, __va_arg_pack ()); ^ layer3/Executive.cpp:12701:5: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 225 [-Wformat-truncation=] int ExecutiveSetSettingFromString(PyMOLGlobals * G, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:12701:5: note: directive argument in the range [1, 2147483647] In file included from /usr/include/stdio.h:862:0, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output 43 or more bytes (assuming 307) into a destination of size 255 __bos (__s), __fmt, __va_arg_pack ()); ^ layer3/Executive.cpp: In function 'int ExecutiveSetObjSettingFromString(PyMOLGlobals*, int, const char*, CObject*, int, int, int)': layer3/Executive.cpp:12847:5: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 225 [-Wformat-truncation=] int ExecutiveSetObjSettingFromString(PyMOLGlobals * G, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862:0, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output 34 or more bytes (assuming 289) into a destination of size 255 __bos (__s), __fmt, __va_arg_pack ()); ^ layer3/Executive.cpp:12847:5: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 225 [-Wformat-truncation=] int ExecutiveSetObjSettingFromString(PyMOLGlobals * G, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:12847:5: note: directive argument in the range [1, 2147483647] In file included from /usr/include/stdio.h:862:0, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output 43 or more bytes (assuming 307) into a destination of size 255 __bos (__s), __fmt, __va_arg_pack ()); ^ layer3/Executive.cpp: In function 'int ExecutiveUnsetSetting(PyMOLGlobals*, int, const char*, int, int, int)': layer3/Executive.cpp:12908:5: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 215 [-Wformat-truncation=] int ExecutiveUnsetSetting(PyMOLGlobals * G, int index, const char *sele, ^~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862:0, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output 44 or more bytes (assuming 299) into a destination of size 255 __bos (__s), __fmt, __va_arg_pack ()); ^ layer3/Executive.cpp:12908:5: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 227 [-Wformat-truncation=] int ExecutiveUnsetSetting(PyMOLGlobals * G, int index, const char *sele, ^~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862:0, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output 32 or more bytes (assuming 287) into a destination of size 255 __bos (__s), __fmt, __va_arg_pack ()); ^ layer3/Executive.cpp:12908:5: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 227 [-Wformat-truncation=] int ExecutiveUnsetSetting(PyMOLGlobals * G, int index, const char *sele, ^~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:12908:5: note: directive argument in the range [1, 2147483647] In file included from /usr/include/stdio.h:862:0, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output 41 or more bytes (assuming 305) into a destination of size 255 __bos (__s), __fmt, __va_arg_pack ()); ^ layer3/Executive.cpp: In function 'void ExecutiveManageObject(PyMOLGlobals*, CObject*, int, int)': layer3/Executive.cpp:15063:6: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 235 [-Wformat-truncation=] void ExecutiveManageObject(PyMOLGlobals * G, CObject * obj, int zoom, int quiet) ^~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862:0, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 32 and 287 bytes into a destination of size 255 __bos (__s), __fmt, __va_arg_pack ()); ^ layer3/Executive.cpp:15063:6: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 230 [-Wformat-truncation=] void ExecutiveManageObject(PyMOLGlobals * G, CObject * obj, int zoom, int quiet) ^~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862:0, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 61 and 316 bytes into a destination of size 255 __bos (__s), __fmt, __va_arg_pack ()); ^ layer3/Executive.cpp:15063:6: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 229 [-Wformat-truncation=] void ExecutiveManageObject(PyMOLGlobals * G, CObject * obj, int zoom, int quiet) ^~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862:0, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 73 and 328 bytes into a destination of size 255 __bos (__s), __fmt, __va_arg_pack ()); ^ layer3/Executive.cpp: In function 'int ExecutiveGroup(PyMOLGlobals*, const char*, const char*, int, int)': layer3/Executive.cpp:2063:5: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 235 [-Wformat-truncation=] int ExecutiveGroup(PyMOLGlobals * G, const char *name, const char *members, int action, int quiet) ^~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862:0, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 36 and 546 bytes into a destination of size 255 __bos (__s), __fmt, __va_arg_pack ()); ^ layer3/Executive.cpp: In function 'int ExecutiveSetSession(PyMOLGlobals*, PyObject*, int, int)': layer3/Executive.cpp:5569:5: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 213 [-Wformat-truncation=] int ExecutiveSetSession(PyMOLGlobals * G, PyObject * session, ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862:0, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 56 and 321 bytes into a destination of size 255 __bos (__s), __fmt, __va_arg_pack ()); ^ layer3/Executive.cpp:5569:5: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 210 [-Wformat-truncation=] int ExecutiveSetSession(PyMOLGlobals * G, PyObject * session, ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862:0, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 49 and 304 bytes into a destination of size 255 __bos (__s), __fmt, __va_arg_pack ()); ^ layer3/Executive.cpp: In function 'void ExecutiveCopy(PyMOLGlobals*, const char*, const char*, int)': layer3/Executive.cpp:10403:6: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 236 [-Wformat-truncation=] void ExecutiveCopy(PyMOLGlobals * G, const char *src, const char *dst, int zoom) ^~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862:0, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 30 and 285 bytes into a destination of size 255 __bos (__s), __fmt, __va_arg_pack ()); ^ layer3/Executive.cpp: In function 'int ExecutiveProcessPDBFile(PyMOLGlobals*, CObject*, const char*, const char*, const char*, int, int, int, char*, int, int, int, int)': layer3/Executive.cpp:3985:5: warning: '%s' directive writing up to 255 bytes into a region of size between 0 and 255 [-Wformat-overflow=] int ExecutiveProcessPDBFile(PyMOLGlobals * G, CObject * origObj, ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862:0, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/bits/stdio2.h:34:43: note: '__builtin___sprintf_chk' output between 12 and 522 bytes into a destination of size 256 __bos (__s), __fmt, __va_arg_pack ()); ^ i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer3/Editor.cpp -o build/temp.linux-i686-2.7/layer3/Editor.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 layer3/Editor.cpp: In function 'void EditorDrawDihedral(PyMOLGlobals*)': layer3/Editor.cpp:114:15: warning: variable 'sele0' set but not used [-Wunused-but-set-variable] int sele0, sele3; ^~~~~ layer3/Editor.cpp:114:22: warning: variable 'sele3' set but not used [-Wunused-but-set-variable] int sele0, sele3; ^~~~~ layer3/Editor.cpp: In function 'void EditorAttach(PyMOLGlobals*, const char*, int, int, const char*, int)': layer3/Editor.cpp:919:7: warning: variable 'state' set but not used [-Wunused-but-set-variable] int state; ^~~~~ layer3/Editor.cpp: In function 'void EditorReplace(PyMOLGlobals*, const char*, int, int, const char*, int)': layer3/Editor.cpp:1097:7: warning: variable 'state' set but not used [-Wunused-but-set-variable] int state; ^~~~~ i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer3/CifDataValueFormatter.cpp -o build/temp.linux-i686-2.7/layer3/CifDataValueFormatter.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer3/AtomIterators.cpp -o build/temp.linux-i686-2.7/layer3/AtomIterators.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 layer3/AtomIterators.cpp: In member function 'virtual bool SeleAtomIterator::next()': layer3/AtomIterators.cpp:58:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] while ((++a) < I->NAtom) { ~~~~~~^~~~~~~~~~ layer3/AtomIterators.cpp: In member function 'virtual bool SeleCoordIterator::next()': layer3/AtomIterators.cpp:113:15: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (a++; a < I->NAtom; a++) { ~~^~~~~~~~~~ i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer4/PopUp.cpp -o build/temp.linux-i686-2.7/layer4/PopUp.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer4/Menu.cpp -o build/temp.linux-i686-2.7/layer4/Menu.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer4/Export.cpp -o build/temp.linux-i686-2.7/layer4/Export.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer4/Cmd.cpp -o build/temp.linux-i686-2.7/layer4/Cmd.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 layer4/Cmd.cpp: In function 'PyObject* CmdPushUndo(PyObject*, PyObject*)': layer4/Cmd.cpp:2585:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if(ok) ^~ layer4/Cmd.cpp:2587:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if(s0[0]) ^~ layer4/Cmd.cpp: In function 'PyObject* Cmd_New(PyObject*, PyObject*)': layer4/Cmd.cpp:4130:11: warning: variable 'ok' set but not used [-Wunused-but-set-variable] int ok = true; ^~ layer4/Cmd.cpp: In function 'PyObject* CmdLoadObject(PyObject*, PyObject*)': layer4/Cmd.cpp:6849:9: warning: variable 'isTmp' set but not used [-Wunused-but-set-variable] int isTmp; ^~~~~ layer4/Cmd.cpp: In function 'PyObject* CmdSetObjectColor(PyObject*, PyObject*)': layer4/Cmd.cpp:7479:7: warning: variable 'result' set but not used [-Wunused-but-set-variable] int result = -1; ^~~~~~ layer4/Cmd.cpp: In function 'PyObject* CmdCreate(PyObject*, PyObject*)': layer4/Cmd.cpp:4851:8: warning: 'copy_properties' may be used uninitialized in this function [-Wmaybe-uninitialized] ok = ExecutiveSeleToObject(G, str1, str2, ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ source, target, discrete, zoom, quiet, singletons, copy_properties); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer5/main.cpp -o build/temp.linux-i686-2.7/layer5/main.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer5/TestPyMOL.cpp -o build/temp.linux-i686-2.7/layer5/TestPyMOL.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer5/PyMOL.cpp -o build/temp.linux-i686-2.7/layer5/PyMOL.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 layer5/PyMOL.cpp: In function 'PyMOLreturn_status Loader(CPyMOL*, const char*, const char*, int, const char*, char*, int, int, int, int, int, int)': layer5/PyMOL.cpp:1611:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if((stop - start) >= sizeof(WordType)) ~~~~~~~~~~~~~~~^~~~~~~~~~ i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c modules/cealign/src/ccealignmodule.cpp -o build/temp.linux-i686-2.7/modules/cealign/src/ccealignmodule.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 In file included from modules/cealign/src/tnt/tnt.h:49:0, from modules/cealign/src/ccealignmodule.cpp:38: modules/cealign/src/tnt/tnt_array2d_utils.h: In function 'std::istream& TNT::operator>>(std::istream&, TNT::Array2D&)': modules/cealign/src/tnt/tnt_array2d_utils.h:62:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for (int i=0; i>(std::istream&, TNT::Array3D&)': modules/cealign/src/tnt/tnt_array3d_utils.h:47:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for (int i=0; i>(std::istream&, TNT::Fortran_Array2D&)': modules/cealign/src/tnt/tnt_fortran_array2d_utils.h:61:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for (int i=1; i<=M; i++) ^~~ modules/cealign/src/tnt/tnt_fortran_array2d_utils.h:67:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' A = B; ^ In file included from modules/cealign/src/tnt/tnt.h:57:0, from modules/cealign/src/ccealignmodule.cpp:38: modules/cealign/src/tnt/tnt_fortran_array3d_utils.h: In function 'std::istream& TNT::operator>>(std::istream&, TNT::Fortran_Array3D&)': modules/cealign/src/tnt/tnt_fortran_array3d_utils.h:65:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for (int i=1; i<=M; i++) ^~~ modules/cealign/src/tnt/tnt_fortran_array3d_utils.h:70:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' A = B; ^ i586-alt-linux-gcc -pthread -DNDEBUG -pipe -frecord-gcc-switches -Wall -g -O3 -march=i586 -mtune=generic -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c build/generated/ShaderText.c -o build/temp.linux-i686-2.7/build/generated/ShaderText.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-gcc -pthread -DNDEBUG -pipe -frecord-gcc-switches -Wall -g -O3 -march=i586 -mtune=generic -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-gcc -pthread -DNDEBUG -pipe -frecord-gcc-switches -Wall -g -O3 -march=i586 -mtune=generic -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c: In function 'vtf_read_bonds': contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:147:48: warning: '%s' directive argument is null [-Wformat-overflow=] sprintf(message, "vtfplugin:%d: error: %s: \"%s\"\n", ^~ i586-alt-linux-gcc -pthread -DNDEBUG -pipe -frecord-gcc-switches -Wall -g -O3 -march=i586 -mtune=generic -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c: In function 'read_vaspxml_structure': contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:139:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:144:9: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c: In function 'open_vaspxml_read': contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:86:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:92:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i586-alt-linux-gcc -pthread -DNDEBUG -pipe -frecord-gcc-switches -Wall -g -O3 -march=i586 -mtune=generic -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c: In function 'read_vaspxdatcar_timestep': contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:283:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c: In function 'read_vaspxdatcar_structure': contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:228:27: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (i = 0; i < 4; ++i) fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:233:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:237:32: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (i = 0; i < 2; ++i) fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:252:44: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (i = 0; i < 10 - data->version; ++i) fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c: In function 'open_vaspxdatcar_read': contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:89:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, poscar); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:92:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, poscar); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:97:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, poscar); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:111:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, poscar); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:121:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, poscar); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i586-alt-linux-gcc -pthread -DNDEBUG -pipe -frecord-gcc-switches -Wall -g -O3 -march=i586 -mtune=generic -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function 'read_vaspposcar_timestep': contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:231:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:236:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:245:43: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (i = 0; i < data->version - 2; ++i) fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:248:35: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] if (tolower(lineptr[0]) == 's') fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:255:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function 'read_vaspposcar_structure': contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:194:42: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (i = 0; i < data->version + 3; ++i) fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:197:34: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] if (tolower(lineptr[0]) == 's') fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:202:4: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function 'open_vaspposcar_read': contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:69:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:73:27: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (i = 0; i < 5; ++i) fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:86:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i586-alt-linux-gcc -pthread -DNDEBUG -pipe -frecord-gcc-switches -Wall -g -O3 -march=i586 -mtune=generic -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function 'read_vaspparchg_data': contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:238:60: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (n = 0; n < data->numatoms + data->version + 5; ++n) fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function 'read_vaspparchg_metadata': contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:150:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function 'open_vaspparchg_read': contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:71:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:75:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:81:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:92:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:103:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:131:44: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (i = 0; i < data->numatoms + 2; ++i) fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i586-alt-linux-gcc -pthread -DNDEBUG -pipe -frecord-gcc-switches -Wall -g -O3 -march=i586 -mtune=generic -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c: In function 'read_vaspoutcar_timestep': contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:239:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:242:2: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c: In function 'read_vaspoutcar_structure': contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:204:9: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c: In function 'open_vaspoutcar_read': contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:87:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i586-alt-linux-gcc -pthread -DNDEBUG -pipe -frecord-gcc-switches -Wall -g -O3 -march=i586 -mtune=generic -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function 'read_vaspchgcar_data': contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:237:60: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (n = 0; n < data->numatoms + data->version + 5; ++n) fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:282:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function 'read_vaspchgcar_metadata': contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:150:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function 'open_vaspchgcar_read': contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:71:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:75:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:81:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:92:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:103:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:131:44: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (i = 0; i < data->numatoms + 2; ++i) fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i586-alt-linux-gcc -pthread -DNDEBUG -pipe -frecord-gcc-switches -Wall -g -O3 -march=i586 -mtune=generic -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c: In function 'read_vasp5xdatcar_timestep': contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:224:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c: In function 'read_vasp5xdatcar_structure': contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:174:27: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (i = 0; i < 2; ++i) fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:180:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:189:26: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (i = 0; i < 3; ++i) fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:194:4: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:204:26: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (i = 0; i < 8; ++i) fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c: In function 'open_vasp5xdatcar_read': contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:69:27: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (i = 0; i < 5; ++i) fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:72:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:77:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i586-alt-linux-gcc -pthread -DNDEBUG -pipe -frecord-gcc-switches -Wall -g -O3 -march=i586 -mtune=generic -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-gcc -pthread -DNDEBUG -pipe -frecord-gcc-switches -Wall -g -O3 -march=i586 -mtune=generic -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c: In function 'open_rst_read': contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:48:11: warning: variable 'timesteprst' set but not used [-Wunused-but-set-variable] double timesteprst; ^~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:67:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(title, 82, fd); ^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:70:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 82, fd); ^~~~~~~~~~~~~~~~~~~ i586-alt-linux-gcc -pthread -DNDEBUG -pipe -frecord-gcc-switches -Wall -g -O3 -march=i586 -mtune=generic -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-gcc -pthread -DNDEBUG -pipe -frecord-gcc-switches -Wall -g -O3 -march=i586 -mtune=generic -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c: In function 'get_atom_radius': contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:166:16: warning: variable 'type' set but not used [-Wunused-but-set-variable] char *name, *type; ^~~~ contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:166:9: warning: variable 'name' set but not used [-Wunused-but-set-variable] char *name, *type; ^~~~ i586-alt-linux-gcc -pthread -DNDEBUG -pipe -frecord-gcc-switches -Wall -g -O3 -march=i586 -mtune=generic -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-gcc -pthread -DNDEBUG -pipe -frecord-gcc-switches -Wall -g -O3 -march=i586 -mtune=generic -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c: In function 'read_next_timestep': contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c:103:10: warning: variable 'numatoms' set but not used [-Wunused-but-set-variable] int i, numatoms; ^~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c: In function 'open_namdbin_read': contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c:78:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&filen, sizeof(namdbin_int32), 1, fd); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i586-alt-linux-gcc -pthread -DNDEBUG -pipe -frecord-gcc-switches -Wall -g -O3 -march=i586 -mtune=generic -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function 'read_molden_rundata': contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:596:25: warning: variable 'hessian_data' set but not used [-Wunused-but-set-variable] molfile_qm_hessian_t *hessian_data; ^~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function 'count_orbitals': contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:1165:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(data->file, " Ene= %f\n", &orbenergy); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:1166:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(data->file, " Spin= %s\n", spin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:1167:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(data->file, " Occup= %f\n", &occu); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:49:0: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function 'eatline': contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:840:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 1024, fd); ^~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function 'open_molden_read': contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:224:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(data->file, "%d", &natm); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i586-alt-linux-gcc -pthread -DNDEBUG -pipe -frecord-gcc-switches -Wall -g -O3 -march=i586 -mtune=generic -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 In file included from contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c:79:0: contrib/uiuc/plugins/molfile_plugin/src/fastio.h: In function 'fio_fread': contrib/uiuc/plugins/molfile_plugin/src/fastio.h:435:35: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'fio_size_t {aka long long int}' [-Wformat=] printf("fio_fread(): rc %ld sz: %ld\n", rc, size); ~~^ %lld contrib/uiuc/plugins/molfile_plugin/src/fastio.h:435:44: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'fio_size_t {aka long long int}' [-Wformat=] printf("fio_fread(): rc %ld sz: %ld\n", rc, size); ~~^ %lld contrib/uiuc/plugins/molfile_plugin/src/fastio.h: In function 'fio_fwrite': contrib/uiuc/plugins/molfile_plugin/src/fastio.h:560:36: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'fio_size_t {aka long long int}' [-Wformat=] printf("fio_fwrite(): rc %ld sz: %ld szleft: %ld calls: %d\n", ~~^ %lld contrib/uiuc/plugins/molfile_plugin/src/fastio.h:560:45: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'fio_size_t {aka long long int}' [-Wformat=] printf("fio_fwrite(): rc %ld sz: %ld szleft: %ld calls: %d\n", ~~^ %lld contrib/uiuc/plugins/molfile_plugin/src/fastio.h:560:58: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'fio_size_t {aka long long int}' [-Wformat=] printf("fio_fwrite(): rc %ld sz: %ld szleft: %ld calls: %d\n", ~~^ %lld i586-alt-linux-gcc -pthread -DNDEBUG -pipe -frecord-gcc-switches -Wall -g -O3 -march=i586 -mtune=generic -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/inthash.c -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/inthash.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-gcc -pthread -DNDEBUG -pipe -frecord-gcc-switches -Wall -g -O3 -march=i586 -mtune=generic -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/hash.c -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/hash.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-gcc -pthread -DNDEBUG -pipe -frecord-gcc-switches -Wall -g -O3 -march=i586 -mtune=generic -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function 'have_gamess': contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1106:8: warning: variable 'word' set but not used [-Wunused-but-set-variable] char word[3][BUFSIZ]; ^~~~ contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function 'get_basis_stats': contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:2264:8: warning: variable 'word' set but not used [-Wunused-but-set-variable] char word[7][BUFSIZ]; ^~~~ contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function 'get_wavefunction': contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:3573:8: warning: variable 'word' set but not used [-Wunused-but-set-variable] char word[6][BUFSIZ]; ^~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:160:0: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function 'eatline': contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:840:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 1024, fd); ^~~~~~~~~~~~~~~~~~~~~~~~ i586-alt-linux-gcc -pthread -DNDEBUG -pipe -frecord-gcc-switches -Wall -g -O3 -march=i586 -mtune=generic -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function 'read_dlpoly_config_structure': contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:292:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (NULL == fgets(fbuffer, 1024, data->file)) ^~ contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:295:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (NULL == fgets(fbuffer, 1024, data->file)) ^~ contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function 'read_dlpoly_config_timestep': contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:669:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(fbuffer, 1024, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function 'read_dlpoly_timestep': contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:554:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(fbuffer, 1024, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i586-alt-linux-gcc -pthread -DNDEBUG -pipe -frecord-gcc-switches -Wall -g -O3 -march=i586 -mtune=generic -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 In file included from contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:51:0: contrib/uiuc/plugins/molfile_plugin/src/fastio.h: In function 'fio_fread': contrib/uiuc/plugins/molfile_plugin/src/fastio.h:435:35: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'fio_size_t {aka long long int}' [-Wformat=] printf("fio_fread(): rc %ld sz: %ld\n", rc, size); ~~^ %lld contrib/uiuc/plugins/molfile_plugin/src/fastio.h:435:44: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'fio_size_t {aka long long int}' [-Wformat=] printf("fio_fread(): rc %ld sz: %ld\n", rc, size); ~~^ %lld contrib/uiuc/plugins/molfile_plugin/src/fastio.h: In function 'fio_fwrite': contrib/uiuc/plugins/molfile_plugin/src/fastio.h:560:36: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'fio_size_t {aka long long int}' [-Wformat=] printf("fio_fwrite(): rc %ld sz: %ld szleft: %ld calls: %d\n", ~~^ %lld contrib/uiuc/plugins/molfile_plugin/src/fastio.h:560:45: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'fio_size_t {aka long long int}' [-Wformat=] printf("fio_fwrite(): rc %ld sz: %ld szleft: %ld calls: %d\n", ~~^ %lld contrib/uiuc/plugins/molfile_plugin/src/fastio.h:560:58: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'fio_size_t {aka long long int}' [-Wformat=] printf("fio_fwrite(): rc %ld sz: %ld szleft: %ld calls: %d\n", ~~^ %lld contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c: In function 'read_dcdstep': contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:546:16: warning: variable 'readlen' set but not used [-Wunused-but-set-variable] fio_size_t readlen; /* number of bytes actually read */ ^~~~~~~ i586-alt-linux-gcc -pthread -DNDEBUG -pipe -frecord-gcc-switches -Wall -g -O3 -march=i586 -mtune=generic -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/crdplugin.c -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-gcc -pthread -DNDEBUG -pipe -frecord-gcc-switches -Wall -g -O3 -march=i586 -mtune=generic -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/corplugin.c -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/corplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-gcc -pthread -DNDEBUG -pipe -frecord-gcc-switches -Wall -g -O3 -march=i586 -mtune=generic -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/carplugin.c -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/carplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function 'read_car_timestep': contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:326:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:339:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:344:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:349:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:363:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:373:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function 'read_car_structure': contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:266:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:268:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:272:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:295:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:305:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function 'open_car_read': contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:169:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:179:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:182:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:210:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:213:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:224:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:226:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:230:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:234:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:245:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~~~~~~~~~~~~~~~~~~~~~ i586-alt-linux-gcc -pthread -DNDEBUG -pipe -frecord-gcc-switches -Wall -g -O3 -march=i586 -mtune=generic -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c: In function 'open_binpos_read': contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c:64:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(magicchar,sizeof(char),4,fd); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c:72:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&igarb,sizeof(int),1,fd); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i586-alt-linux-gcc -pthread -DNDEBUG -pipe -frecord-gcc-switches -Wall -g -O3 -march=i586 -mtune=generic -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-gcc -pthread -DNDEBUG -pipe -frecord-gcc-switches -Wall -g -O3 -march=i586 -mtune=generic -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function 'DEN_read_volumetric_data': contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:970:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:971:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function 'POT_read_volumetric_data': contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:1113:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:1114:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function 'abinit_header': contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:1511:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(skip, 1, 8, fp); ^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function 'GEO_read_next_timestep': contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:619:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(data->file, "%*s %f %f %f", &x, &y, &z); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i586-alt-linux-gcc -pthread -DNDEBUG -pipe -frecord-gcc-switches -Wall -g -O3 -march=i586 -mtune=generic -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c: In function 'PlugIOManagerInitAll': contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:267:1: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if(ok) ok = ok && (molfile_xyzplugin_init() == VMDPLUGIN_SUCCESS); ^~ contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:269:8: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if(ok) { ^~ contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c: In function 'PlugIOManagerFreeAll': contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:405:1: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if(ok) ok = ok && (molfile_xyzplugin_fini() == VMDPLUGIN_SUCCESS); ^~ contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:407:8: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' return ok; ^~~~~~ i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp: In function 'void eatline(FILE*)': contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:238:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 1024, fd); // go on to next line ~~~~~^~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp: In function 'void* open_xsf_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:408:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 256, xsf->fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:442:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 256, xsf->fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:444:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 256, xsf->fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:446:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 256, xsf->fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:448:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 256, xsf->fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:450:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 256, xsf->fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:473:22: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 256, xsf->fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:508:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 256, xsf->fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function 'int read_xbgf_timestep(void*, int, molfile_timestep_t*)': contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:288:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:297:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function 'int read_xbgf_bonds_aux(void*, int*, int**, int**, float**)': contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:365:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:387:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:395:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(nextline, LINESIZE, bgf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:455:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function 'int read_xbgf_structure(void*, int*, molfile_atom_t*)': contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:241:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:250:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function 'void* open_xbgf_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:72:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ~~~~~^~~~~~~~~~~~~~~~~~~~ i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp: In function 'int read_vtk_data(void*, int, float*, float*)': contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:276:45: warning: variable 'total' set but not used [-Wunused-but-set-variable] int x, y, z, xsize, ysize, zsize, xysize, total; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp: In function 'int read_vtk_data_ex(void*, molfile_volumetric_readwrite_t*)': contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:338:45: warning: variable 'total' set but not used [-Wunused-but-set-variable] int x, y, z, xsize, ysize, zsize, xysize, total; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:371:15: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(fd, "%lf %lf %lf", &vx, &vy, &vz); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp: In function 'int read_vtk_data(void*, int, float*, float*)': contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:306:15: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(fd, "%lf %lf %lf", &vx, &vy, &vz); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp: In function 'void* open_uhbd_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp:90:22: warning: variable 'o' set but not used [-Wunused-but-set-variable] float orig[3], ra, o[3], s[3]; //xdelta[3], ydelta[3], zdelta[3]; ^ contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp:90:28: warning: variable 's' set but not used [-Wunused-but-set-variable] float orig[3], ra, o[3], s[3]; //xdelta[3], ydelta[3], zdelta[3]; ^ contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp: In function 'int read_uhbd_data(void*, int, float*, float*)': contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp:254:66: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (fread(datablock + z*xysize, sizeof(float), xysize, fd) != xysize) { ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp: In function 'void* open_uhbd_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp:102:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&headersize, sizeof(int), 1, fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp: In function 'int read_rawgraphics(void*, int*, const molfile_graphics_t**)': contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:96:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:104:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:119:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:131:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:153:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:162:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:171:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~ i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp: In function 'int read_spider_data(void*, int, float*, float*)': contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp:286:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(datablock, total * sizeof(float), 1, fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/situsplugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/plyplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 In file included from contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp:30:0: contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function 'void put_element_ply(PlyFile*, void*)': contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:459:7: warning: unused variable 'i' [-Wunused-variable] int i,j,k; ^ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function 'void ascii_get_element(PlyFile*, char*)': contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1407:7: warning: unused variable 'i' [-Wunused-variable] int i,j,k; ^ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function 'void binary_get_element(PlyFile*, char*)': contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1541:7: warning: unused variable 'i' [-Wunused-variable] int i,j,k; ^ contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp: In function 'int read_rawgraphics(void*, int*, const molfile_graphics_t**)': contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp:107:17: warning: variable 'vert_other' set but not used [-Wunused-but-set-variable] PlyOtherProp *vert_other=NULL; ^~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp:108:17: warning: variable 'face_other' set but not used [-Wunused-but-set-variable] PlyOtherProp *face_other=NULL; ^~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp:30:0: contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function 'void binary_get_element(PlyFile*, char*)': contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1629:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread (&len, sizeof(int), 1, fp); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1631:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread (str, len, 1, fp); ~~~~~~^~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function 'void get_binary_item(FILE*, int, int*, unsigned int*, double*)': contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2057:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread (ptr, 1, 1, fp); ~~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2063:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread (ptr, 1, 1, fp); ~~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2069:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread (ptr, 2, 1, fp); ~~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2075:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread (ptr, 2, 1, fp); ~~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2081:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread (ptr, 4, 1, fp); ~~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2087:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread (ptr, 4, 1, fp); ~~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2093:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread (ptr, 4, 1, fp); ~~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2099:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread (ptr, 8, 1, fp); ~~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function 'void ascii_get_element(PlyFile*, char*)': contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1477:19: warning: 'other_data' may be used uninitialized in this function [-Wmaybe-uninitialized] store_array = (char **) (elem_data + prop->offset); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function 'void binary_get_element(PlyFile*, char*)': contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1634:14: warning: 'other_data' may be used uninitialized in this function [-Wmaybe-uninitialized] item = elem_data + prop->offset; ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp: In function 'int read_plt_data(void*, int, float*, float*)': contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:143:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ( fread(datablock, sizeof(float), ndata, fd) != ndata ) { ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp: In function 'void* open_plt_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:69:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(intHeader, sizeof(int), 5, fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:82:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(floatHeader, sizeof(float), 6, fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/phiplugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function 'int getUniqueResID(char*, int)': contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:443:7: warning: unused variable 'i' [-Wunused-variable] int i, uid; ^ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function 'int parseStructureFaster(molfile_atom_t*, int*, pdbxParser*)': contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:484:47: warning: unused variable 'j' [-Wunused-variable] int i, count, atomdata, pos, idx, xyzcount, j; ^ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:503:8: warning: unused variable 'oldChain' [-Wunused-variable] char oldChain[8]; ^~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function 'bool readAngleBonds(molfile_atom_t*, pdbxParser*)': contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:803:7: warning: unused variable 'bondTable' [-Wunused-variable] int bondTable[32]; ^~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:807:15: warning: unused variable 'j' [-Wunused-variable] int i, pos, j, k; ^ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:811:8: warning: unused variable 'modelNum' [-Wunused-variable] char modelNum[8]; ^~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:822:20: warning: unused variable 'atom' [-Wunused-variable] molfile_atom_t * atom; ^~~~ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:884:7: warning: unused variable 'test' [-Wunused-variable] int test = parser->nbonds + bnum; ^~~~ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function 'bool readRMSDBonds(molfile_atom_t*, pdbxParser*)': contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:984:7: warning: unused variable 'bondTable' [-Wunused-variable] int bondTable[32]; ^~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:988:15: warning: unused variable 'j' [-Wunused-variable] int i, pos, j, k; ^ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:991:8: warning: unused variable 'modelNum' [-Wunused-variable] char modelNum[8]; ^~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:1002:20: warning: unused variable 'atom' [-Wunused-variable] molfile_atom_t * atom; ^~~~ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function 'void* open_file_write(const char*, const char*, int)': contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:1409:9: warning: unused variable 'fd' [-Wunused-variable] FILE* fd; ^~ i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 In file included from contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp:24:0: contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h: In member function 'int {anonymous}::ReadPARM::readparm(FILE*)': contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:435:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Charges[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:444:10: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Masses[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:510:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Rk[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:517:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Req[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:524:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Tk[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:531:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Teq[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:538:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Pk[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:545:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Pn[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:552:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Phase[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:559:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Solty[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:567:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Cn1[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:575:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Cn2[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:756:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->HB12[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:763:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->HB6[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:771:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &H[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:853:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT " " DBLFMT " " DBLFMT, ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &prm->Box[0], &prm->Box[1], &prm->Box[2]); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:867:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %d " DBLFMT " " DBLFMT " " DBLFMT " " DBLFMT, ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &prm->Natcap, &prm->Cutcap, ~~~~~~~~~~~~~~~~~~~~~~~~~~~ &prm->Xcap, &prm->Ycap, &prm->Zcap); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp: In function 'int read_parm7_structure(void*, int*, molfile_atom_t*)': contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp:78:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(buf, 85, file); ~~~~~^~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp:25:0: contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'int parse_parm7_atoms(const char*, int, molfile_atom_t*, FILE*)': contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:204:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(buf, 85, file); ~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'int parse_parm7_atype(const char*, int, molfile_atom_t*, FILE*)': contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:257:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(buf, 85, file); ~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'int parse_parm7_resnames(const char*, int, char*, FILE*)': contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:275:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(buf, 85, file); ~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'int parse_parm7_respointers(const char*, int, molfile_atom_t*, int, const char*, FILE*)': contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:289:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %d", &cur); ~~~~~~^~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'parmstruct* read_parm7_header(FILE*)': contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:368:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(sdum, 512, file); ~~~~~^~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:371:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, "%s\n", sdum); // "%FLAG" ~~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:378:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, "%s\n", sdum); // "TITLE" or "CTITLE" ~~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:385:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, "%s\n", sdum); // "FORMAT (20a4)" ~~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:399:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(prm->title, sizeof(prm->title), file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:427:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(sdum, sizeof(sdum), file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:439:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file,parm7, ~~~~~~^~~~~~~~~~~~ &prm->Natom, &prm->Ntypes, &prm->Nbonh, &prm->Nbona, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &prm->Ntheth, &prm->Ntheta, &prm->Nphih, &prm->Nphia, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &prm->Jparm, &prm->Nparm); ~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:443:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, parm7, ~~~~~~^~~~~~~~~~~~~ &prm->Nnb, &prm->Nres, &prm->Mbona, &prm->Mtheta, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &prm->Mphia, &prm->Numbnd, &prm->Numang, &prm->Mptra, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &prm->Natyp, &prm->Nphb); ~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:447:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, parm7, &prm->Ifpert, &prm->Nbper, &prm->Ngper, ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &prm->Ndper, &prm->Mbper, &prm->Mgper, &prm->Mdper, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &prm->IfBox, &prm->Nmxrs, &prm->IfCap); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:451:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file,"%8d",&prm->Numextra); //BB ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'int read_parm7_flag(FILE*, const char*, const char*)': contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:79:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, "%s\n", buf); ~~~~~~^~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:87:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, "%s\n", buf); ~~~~~~^~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:97:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, "%s\n", buf); ~~~~~~^~~~~~~~~~~~~~~~~~~ i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/offplugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/offplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp: In function 'int read_rawgraphics(void*, int*, const molfile_graphics_t**)': contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:91:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:116:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:132:9: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:149:11: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:155:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:161:11: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); //one more read to keep us in sync ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:170:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:217:15: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:237:23: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:256:15: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~ i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function 'int read_mol2_timestep(void*, int, molfile_timestep_t*)': contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:275:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, mol2->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:289:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, mol2->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function 'int read_mol2_bonds_aux(void*, int*, int**, int**, float**)': contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:199:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, mol2->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:209:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, mol2->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function 'int read_mol2(void*, int*, molfile_atom_t*)': contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:127:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, mol2->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:138:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, mol2->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function 'void* open_mol2_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:74:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:81:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); // Read and ignore the mol_name ~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:82:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); // Read the molecule info ~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:91:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); // Read and ignore the mol_type ~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:92:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); // Read the charge_type ~~~~~^~~~~~~~~~~~~~~~~~~~ i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function 'int read_mdf_bonds(void*, int*, int**, int**, float**, int**, int*, char***)': contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:278:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, mdf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:297:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, mdf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:319:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, mdf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:357:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, mdf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function 'int read_mdf_structure(void*, int*, molfile_atom_t*)': contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:223:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, mdf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:241:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, mdf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function 'void* open_mdf_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:164:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:176:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:183:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ~~~~~^~~~~~~~~~~~~~~~~~~~ i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/mapplugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp: In function 'int {anonymous}::write_structure(void*, int, const molfile_atom_t*)': contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp:1886:9: warning: unused variable 'last_ctnumber' [-Wunused-variable] int last_ctnumber = -1; ^~~~~~~~~~~~~ i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 In file included from contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp:30:0: contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h: In function 'int mdio_readline(md_file*, char*, int, int)': contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h:426:7: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(buf, n, mf->f); ~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h: In function 'int xtc_3dfcoord(md_file*, float*, int*, float*)': contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h:1844:25: warning: '*((void*)& maxint +4)' may be used uninitialized in this function [-Wmaybe-uninitialized] sizeint[1] = maxint[1] - minint[1]+1; ~~~~~~~~~~^~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h:1843:25: warning: 'maxint' may be used uninitialized in this function [-Wmaybe-uninitialized] sizeint[0] = maxint[0] - minint[0]+1; ~~~~~~~~~~^~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h:1895:16: warning: '*((void*)& minint +8)' may be used uninitialized in this function [-Wmaybe-uninitialized] thiscoord[2] += minint[2]; ~~~~~~~~~~~~~^~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h:1894:16: warning: '*((void*)& minint +4)' may be used uninitialized in this function [-Wmaybe-uninitialized] thiscoord[1] += minint[1]; ~~~~~~~~~~~~~^~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h:1893:16: warning: 'minint' may be used uninitialized in this function [-Wmaybe-uninitialized] thiscoord[0] += minint[0]; ~~~~~~~~~~~~~^~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h:1859:32: warning: 'smallidx' may be used uninitialized in this function [-Wmaybe-uninitialized] small = xtc_magicints[smallidx] / 2; ~~~~~~~~~~~~~~~~~~~~~~^ contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h:1845:25: warning: '*((void*)& maxint +8)' may be used uninitialized in this function [-Wmaybe-uninitialized] sizeint[2] = maxint[2] - minint[2]+1; ~~~~~~~~~~^~~~~~~~~~~ i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp: In function 'void* open_grid_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp:84:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&dataBegin, sizeof(int), 1, fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/grdplugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp: In function 'void line3(FILE*, GRASSP*)': contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:186:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(line3, 1, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp: In function 'int read_rawgraphics(void*, int*, const molfile_graphics_t**)': contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:284:3: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:285:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(line, 1, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:291:3: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:305:3: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:306:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(line, 1, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:307:3: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:311:3: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:313:3: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:318:3: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:319:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(line, 1, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:320:3: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:328:3: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:329:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(line, 1, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:330:3: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:354:3: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:355:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(vertex, 3 * sizeof(float), nvert, infile); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:356:3: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:357:3: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:358:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(access, 3 * sizeof(float), nvert, infile); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:359:3: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:360:3: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:361:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(normal, 3 * sizeof(float), nvert, infile); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:362:3: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:371:5: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:372:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(triangle, 3 * sizeof(int), ntriangles, infile); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:373:5: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:374:5: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:375:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(properties, 3 * sizeof(float), nvert, infile); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:394:5: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:395:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(striangle, sizeof(short), 3 * ntriangles, infile); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:396:5: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:397:5: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:398:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(properties, sizeof(float), 3 * nvert, infile); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp: In function 'void* open_fs4_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp:79:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&dataBegin, sizeof(int), 1, fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp: In function 'int read_edm_data(void*, int, float*, float*)': contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp:240:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 13, edm->fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp: In function 'void eatline(FILE*)': contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp:44:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 1024, fd); // go on to next line ~~~~~^~~~~~~~~~~~~~~~~~~ i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dxplugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function 'std::__cxx11::string framefile(const string&, size_t, size_t, int, int)': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:766:20: warning: '%03x' directive writing between 3 and 8 bytes into a region of size between 0 and 5 [-Wformat-overflow=] static std::string framefile( const std::string &dtr, ^~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:766:20: note: directive argument in the range [0, 2147483646] In file included from /usr/include/stdio.h:862:0, from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.hxx:56, from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:47: /usr/include/bits/stdio2.h:34:43: note: '__builtin___sprintf_chk' output between 9 and 19 bytes into a destination of size 9 __bos (__s), __fmt, __va_arg_pack ()); ^ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:766:20: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] static std::string framefile( const std::string &dtr, ^~~~~~~~~ In file included from /usr/include/stdio.h:862:0, from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.hxx:56, from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:47: /usr/include/bits/stdio2.h:34:43: note: '__builtin___sprintf_chk' output between 5 and 10 bytes into a destination of size 9 __bos (__s), __fmt, __va_arg_pack ()); ^ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function 'void DDmkdir(const string&, mode_t, int, int)': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:692:6: warning: '%03x' directive writing between 3 and 8 bytes into a region of size 6 [-Wformat-overflow=] void DDmkdir(const std::string &dirpath, mode_t mode, int ndir1, int ndir2){ ^~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:692:6: note: directive argument in the range [0, 2147483647] In file included from /usr/include/stdio.h:862:0, from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.hxx:56, from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:47: /usr/include/bits/stdio2.h:34:43: note: '__builtin___sprintf_chk' output between 5 and 10 bytes into a destination of size 6 __bos (__s), __fmt, __va_arg_pack ()); ^ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:692:6: warning: '%03x' directive writing between 3 and 8 bytes into a region of size 6 [-Wformat-overflow=] void DDmkdir(const std::string &dirpath, mode_t mode, int ndir1, int ndir2){ ^~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:692:6: note: directive argument in the range [0, 2147483647] In file included from /usr/include/stdio.h:862:0, from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.hxx:56, from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:47: /usr/include/bits/stdio2.h:34:43: note: '__builtin___sprintf_chk' output between 4 and 9 bytes into a destination of size 6 __bos (__s), __fmt, __va_arg_pack ()); ^ i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp: In function 'int read_dsn6_data(void*, int, float*, float*)': contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp:233:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(brick, sizeof(char), 512, fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp: In function 'void* open_dsn6_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp:91:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(fileHeader, sizeof(short), 19, fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp: In function 'void* open_cube_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:175:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 1023, cube->fd); // go on to next line ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:181:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 1023, cube->fd); // skip second header line ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:324:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 1023, cube->fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:335:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 1023, cube->fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:337:11: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(cube->fd, "%d", &cube->nsets); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:342:13: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(cube->fd, "%d", &orb); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:347:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 1023, cube->fd); // gobble up rest of line ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp: In function 'int read_ccp4_data(void*, int, float*, float*)': contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:495:58: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ( fread(rowdata, sizeof(char), extent[0], fd) != extent[0] ) { ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:525:67: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ( fread(rowdata, sizeof(unsigned char), extent[0], fd) != extent[0] ) { ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:556:58: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (fread(rowdata, sizeof(float), extent[0], fd) != extent[0] ) { ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:588:58: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (fread(rowdata, sizeof(short), extent[0], fd) != extent[0] ) { ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:623:67: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (fread(rowdata, sizeof(unsigned short), extent[0], fd) != extent[0] ) { ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:655:60: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ( fread(rowdata, sizeof(uchar3), extent[0], fd) != extent[0] ) { ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp: In function 'void* open_ccp4_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:304:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(symData, 81, fd); ~~~~~^~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:287:42: warning: 'dataOffset' may be used uninitialized in this function [-Wmaybe-uninitialized] } else if ((dataOffset > CCP4HDSIZE) && (dataOffset < (1024*1024))) { ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp: In function 'int read_brix_data(void*, int, float*, float*)': contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:247:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(brick, sizeof(char), 512, fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp: In function 'void* open_brix_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:79:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(fd, "%3s", keyWord); ~~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:86:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(fd, " %s %d %d %d", keyWord, &org_x, &org_y, &org_z); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:93:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(fd, " %s %d %d %d", keyWord, &ext_x, &ext_y, &ext_z); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:100:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(fd, " %s %f %f %f", keyWord, &grid_x, &grid_y, &grid_z); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:109:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(fd, " %s %f %f %f %f %f %f", keyWord, ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &cell_x, &cell_y, &cell_z, &cell_alpha, &cell_beta, &cell_gamma); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:123:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(fd, " %s %f", keyWord, &prod); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:128:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(fd, " %s %f", keyWord, &plus); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:135:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(fd, " %s %f", keyWord, &sigma); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function 'int read_bgf_timestep(void*, int, molfile_timestep_t*)': contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:243:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:252:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function 'int read_bgf_bonds_aux(void*, int*, int**, int**, float**)': contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:328:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:346:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:355:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(nextline, LINESIZE, bgf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:419:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function 'int read_bgf_structure(void*, int*, molfile_atom_t*)': contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:194:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:203:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function 'void* open_bgf_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:59:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ~~~~~^~~~~~~~~~~~~~~~~~~~ i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/avsplugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/mmtf-c/mmtf_parser.cpp -o build/temp.linux-i686-2.7/contrib/mmtf-c/mmtf_parser.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 contrib/mmtf-c/mmtf_parser.cpp: In function 'bool MMTF_unpack_from_file(const char*, MMTF_container*)': contrib/mmtf-c/mmtf_parser.cpp:1021:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(buffer, fileLen, 1, file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ i586-alt-linux-g++ -pthread -shared -L/usr/lib/nsl -lnsl -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic build/temp.linux-i686-2.7/ov/src/ov_utility.o build/temp.linux-i686-2.7/ov/src/OVRandom.o build/temp.linux-i686-2.7/ov/src/OVOneToOne.o build/temp.linux-i686-2.7/ov/src/OVOneToAny.o build/temp.linux-i686-2.7/ov/src/OVLexicon.o build/temp.linux-i686-2.7/ov/src/OVHeapArray.o build/temp.linux-i686-2.7/ov/src/OVHeap.o build/temp.linux-i686-2.7/ov/src/OVContext.o build/temp.linux-i686-2.7/layer0/os_gl.o build/temp.linux-i686-2.7/layer0/Word.o build/temp.linux-i686-2.7/layer0/Vector.o build/temp.linux-i686-2.7/layer0/Util2.o build/temp.linux-i686-2.7/layer0/Util.o build/temp.linux-i686-2.7/layer0/Triangle.o build/temp.linux-i686-2.7/layer0/Tracker.o build/temp.linux-i686-2.7/layer0/Texture.o build/temp.linux-i686-2.7/layer0/Tetsurf.o build/temp.linux-i686-2.7/layer0/Sphere.o build/temp.linux-i686-2.7/layer0/ShaderMgr.o build/temp.linux-i686-2.7/layer0/Queue.o build/temp.linux-i686-2.7/layer0/Pixmap.o build/temp.linux-i686-2.7/layer0/Parse.o build/temp.linux-i686-2.7/layer0/MyPNG.o build/temp.linux-i686-2.7/layer0/MemoryDebug.o build/temp.linux-i686-2.7/layer0/MemoryCache.o build/temp.linux-i686-2.7/layer0/Matrix.o build/temp.linux-i686-2.7/layer0/Match.o build/temp.linux-i686-2.7/layer0/Map.o build/temp.linux-i686-2.7/layer0/Isosurf.o build/temp.linux-i686-2.7/layer0/File.o build/temp.linux-i686-2.7/layer0/Field.o build/temp.linux-i686-2.7/layer0/Feedback.o build/temp.linux-i686-2.7/layer0/Err.o build/temp.linux-i686-2.7/layer0/Deferred.o build/temp.linux-i686-2.7/layer0/Debug.o build/temp.linux-i686-2.7/layer0/Crystal.o build/temp.linux-i686-2.7/layer0/Block.o build/temp.linux-i686-2.7/layer1/Wizard.o build/temp.linux-i686-2.7/layer1/View.o build/temp.linux-i686-2.7/layer1/TypeFace.o build/temp.linux-i686-2.7/layer1/Text.o build/temp.linux-i686-2.7/layer1/Symmetry.o build/temp.linux-i686-2.7/layer1/Shaker.o build/temp.linux-i686-2.7/layer1/Setting.o build/temp.linux-i686-2.7/layer1/Seq.o build/temp.linux-i686-2.7/layer1/ScrollBar.o build/temp.linux-i686-2.7/layer1/Scene.o build/temp.linux-i686-2.7/layer1/Rep.o build/temp.linux-i686-2.7/layer1/Ray.o build/temp.linux-i686-2.7/layer1/PyMOLObject.o build/temp.linux-i686-2.7/layer1/Pop.o build/temp.linux-i686-2.7/layer1/PConv.o build/temp.linux-i686-2.7/layer1/P.o build/temp.linux-i686-2.7/layer1/Ortho.o build/temp.linux-i686-2.7/layer1/Movie.o build/temp.linux-i686-2.7/layer1/FontType.o build/temp.linux-i686-2.7/layer1/FontGLUTHel18.o build/temp.linux-i686-2.7/layer1/FontGLUTHel12.o build/temp.linux-i686-2.7/layer1/FontGLUTHel10.o build/temp.linux-i686-2.7/layer1/FontGLUT9x15.o build/temp.linux-i686-2.7/layer1/FontGLUT8x13.o build/temp.linux-i686-2.7/layer1/FontGLUT.o build/temp.linux-i686-2.7/layer1/Font.o build/temp.linux-i686-2.7/layer1/Extrude.o build/temp.linux-i686-2.7/layer1/Control.o build/temp.linux-i686-2.7/layer1/Color.o build/temp.linux-i686-2.7/layer1/Character.o build/temp.linux-i686-2.7/layer1/COLLADA.o build/temp.linux-i686-2.7/layer1/CGO.o build/temp.linux-i686-2.7/layer1/ButMode.o build/temp.linux-i686-2.7/layer1/Basis.o build/temp.linux-i686-2.7/layer2/VFont.o build/temp.linux-i686-2.7/layer2/SideChainHelper.o build/temp.linux-i686-2.7/layer2/SculptCache.o build/temp.linux-i686-2.7/layer2/Sculpt.o build/temp.linux-i686-2.7/layer2/RepWireBond.o build/temp.linux-i686-2.7/layer2/RepSurface.o build/temp.linux-i686-2.7/layer2/RepSphere.o build/temp.linux-i686-2.7/layer2/RepRibbon.o build/temp.linux-i686-2.7/layer2/RepNonbondedSphere.o build/temp.linux-i686-2.7/layer2/RepNonbonded.o build/temp.linux-i686-2.7/layer2/RepMesh.o build/temp.linux-i686-2.7/layer2/RepLabel.o build/temp.linux-i686-2.7/layer2/RepEllipsoid.o build/temp.linux-i686-2.7/layer2/RepDot.o build/temp.linux-i686-2.7/layer2/RepDistLabel.o build/temp.linux-i686-2.7/layer2/RepDistDash.o build/temp.linux-i686-2.7/layer2/RepDihedral.o build/temp.linux-i686-2.7/layer2/RepCylBond.o build/temp.linux-i686-2.7/layer2/RepCartoon.o build/temp.linux-i686-2.7/layer2/RepAngle.o build/temp.linux-i686-2.7/layer2/ObjectVolume.o build/temp.linux-i686-2.7/layer2/ObjectSurface.o build/temp.linux-i686-2.7/layer2/ObjectSlice.o build/temp.linux-i686-2.7/layer2/ObjectMolecule2.o build/temp.linux-i686-2.7/layer2/ObjectMolecule.o build/temp.linux-i686-2.7/layer2/ObjectMesh.o build/temp.linux-i686-2.7/layer2/ObjectMap.o build/temp.linux-i686-2.7/layer2/ObjectGroup.o build/temp.linux-i686-2.7/layer2/ObjectGadgetRamp.o build/temp.linux-i686-2.7/layer2/ObjectGadget.o build/temp.linux-i686-2.7/layer2/ObjectDist.o build/temp.linux-i686-2.7/layer2/ObjectCallback.o build/temp.linux-i686-2.7/layer2/ObjectCGO.o build/temp.linux-i686-2.7/layer2/ObjectAlignment.o build/temp.linux-i686-2.7/layer2/MolV3000.o build/temp.linux-i686-2.7/layer2/Mol2Typing.o build/temp.linux-i686-2.7/layer2/MmtfMoleculeReader.o build/temp.linux-i686-2.7/layer2/MmodTyping.o build/temp.linux-i686-2.7/layer2/GadgetSet.o build/temp.linux-i686-2.7/layer2/DistSet.o build/temp.linux-i686-2.7/layer2/CoordSet.o build/temp.linux-i686-2.7/layer2/CifMoleculeReader.o build/temp.linux-i686-2.7/layer2/CifFile.o build/temp.linux-i686-2.7/layer2/BondTypeHistory.o build/temp.linux-i686-2.7/layer2/AtomInfoHistory.o build/temp.linux-i686-2.7/layer2/AtomInfo.o build/temp.linux-i686-2.7/layer2/AssemblyHelpers.o build/temp.linux-i686-2.7/layer3/Selector.o build/temp.linux-i686-2.7/layer3/Seeker.o build/temp.linux-i686-2.7/layer3/PlugIOManager.o build/temp.linux-i686-2.7/layer3/MovieScene.o build/temp.linux-i686-2.7/layer3/MoleculeExporter.o build/temp.linux-i686-2.7/layer3/Executive.o build/temp.linux-i686-2.7/layer3/Editor.o build/temp.linux-i686-2.7/layer3/CifDataValueFormatter.o build/temp.linux-i686-2.7/layer3/AtomIterators.o build/temp.linux-i686-2.7/layer4/PopUp.o build/temp.linux-i686-2.7/layer4/Menu.o build/temp.linux-i686-2.7/layer4/Export.o build/temp.linux-i686-2.7/layer4/Cmd.o build/temp.linux-i686-2.7/layer5/main.o build/temp.linux-i686-2.7/layer5/TestPyMOL.o build/temp.linux-i686-2.7/layer5/PyMOL.o build/temp.linux-i686-2.7/modules/cealign/src/ccealignmodule.o build/temp.linux-i686-2.7/build/generated/ShaderText.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/inthash.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/hash.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/corplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/carplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/plyplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/offplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.o build/temp.linux-i686-2.7/contrib/mmtf-c/mmtf_parser.o -lxml2 -lpng -lfreetype -lGLEW -lGL -lGLU -lglut -lpython2.7 -o build/lib.linux-i686-2.7/pymol/_cmd.so building 'chempy.champ._champ' extension creating build/temp.linux-i686-2.7/contrib/champ i586-alt-linux-gcc -pthread -DNDEBUG -pipe -frecord-gcc-switches -Wall -g -O3 -march=i586 -mtune=generic -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/vla.c -o build/temp.linux-i686-2.7/contrib/champ/vla.o i586-alt-linux-gcc -pthread -DNDEBUG -pipe -frecord-gcc-switches -Wall -g -O3 -march=i586 -mtune=generic -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/strblock.c -o build/temp.linux-i686-2.7/contrib/champ/strblock.o i586-alt-linux-gcc -pthread -DNDEBUG -pipe -frecord-gcc-switches -Wall -g -O3 -march=i586 -mtune=generic -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/sort.c -o build/temp.linux-i686-2.7/contrib/champ/sort.o i586-alt-linux-gcc -pthread -DNDEBUG -pipe -frecord-gcc-switches -Wall -g -O3 -march=i586 -mtune=generic -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/os_memory.c -o build/temp.linux-i686-2.7/contrib/champ/os_memory.o i586-alt-linux-gcc -pthread -DNDEBUG -pipe -frecord-gcc-switches -Wall -g -O3 -march=i586 -mtune=generic -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/list.c -o build/temp.linux-i686-2.7/contrib/champ/list.o i586-alt-linux-gcc -pthread -DNDEBUG -pipe -frecord-gcc-switches -Wall -g -O3 -march=i586 -mtune=generic -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/feedback2.c -o build/temp.linux-i686-2.7/contrib/champ/feedback2.o i586-alt-linux-gcc -pthread -DNDEBUG -pipe -frecord-gcc-switches -Wall -g -O3 -march=i586 -mtune=generic -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/err2.c -o build/temp.linux-i686-2.7/contrib/champ/err2.o i586-alt-linux-gcc -pthread -DNDEBUG -pipe -frecord-gcc-switches -Wall -g -O3 -march=i586 -mtune=generic -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/chiral.c -o build/temp.linux-i686-2.7/contrib/champ/chiral.o i586-alt-linux-gcc -pthread -DNDEBUG -pipe -frecord-gcc-switches -Wall -g -O3 -march=i586 -mtune=generic -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/champ_module.c -o build/temp.linux-i686-2.7/contrib/champ/champ_module.o i586-alt-linux-gcc -pthread -DNDEBUG -pipe -frecord-gcc-switches -Wall -g -O3 -march=i586 -mtune=generic -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/champ.c -o build/temp.linux-i686-2.7/contrib/champ/champ.o i586-alt-linux-gcc -pthread -shared -L/usr/lib/nsl -lnsl -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic build/temp.linux-i686-2.7/contrib/champ/vla.o build/temp.linux-i686-2.7/contrib/champ/strblock.o build/temp.linux-i686-2.7/contrib/champ/sort.o build/temp.linux-i686-2.7/contrib/champ/os_memory.o build/temp.linux-i686-2.7/contrib/champ/list.o build/temp.linux-i686-2.7/contrib/champ/feedback2.o build/temp.linux-i686-2.7/contrib/champ/err2.o build/temp.linux-i686-2.7/contrib/champ/chiral.o build/temp.linux-i686-2.7/contrib/champ/champ_module.o build/temp.linux-i686-2.7/contrib/champ/champ.o -lpython2.7 -o build/lib.linux-i686-2.7/chempy/champ/_champ.so + exit 0 Executing(%install): /bin/sh -e /usr/src/tmp/rpm-tmp.38167 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + /bin/chmod -Rf u+rwX -- /usr/src/tmp/pymol-buildroot + : + /bin/rm -rf -- /usr/src/tmp/pymol-buildroot + cd pymol-1.8.6.0 + CFLAGS='-pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic' + export CFLAGS + CXXFLAGS='-pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic' + export CXXFLAGS + FFLAGS='-pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic' + export FFLAGS + /usr/bin/python2.7 setup.py install --skip-build --root=/usr/src/tmp/pymol-buildroot --force running install running install_lib creating /usr/src/tmp/pymol-buildroot creating /usr/src/tmp/pymol-buildroot/usr creating /usr/src/tmp/pymol-buildroot/usr/lib creating /usr/src/tmp/pymol-buildroot/usr/lib/python2.7 creating /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages creating /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol2 copying build/lib.linux-i686-2.7/pymol2/__init__.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol2 copying build/lib.linux-i686-2.7/pymol2/cmd2.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol2 creating /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/web creating /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/web/examples copying build/lib.linux-i686-2.7/web/examples/__init__.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/web/examples copying build/lib.linux-i686-2.7/web/examples/justhttpd.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/web/examples copying build/lib.linux-i686-2.7/web/__init__.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/web copying build/lib.linux-i686-2.7/web/pymolhttpd.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/web creating /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_wx copying build/lib.linux-i686-2.7/pmg_wx/__init__.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_wx creating /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk copying build/lib.linux-i686-2.7/pmg_tk/ColorEditor.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk copying build/lib.linux-i686-2.7/pmg_tk/Demo.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk copying build/lib.linux-i686-2.7/pmg_tk/PMGApp.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk copying build/lib.linux-i686-2.7/pmg_tk/PyMOLMapLoad.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk copying build/lib.linux-i686-2.7/pmg_tk/SetEditor.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk copying build/lib.linux-i686-2.7/pmg_tk/Setting.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk copying build/lib.linux-i686-2.7/pmg_tk/TextEditor.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk copying build/lib.linux-i686-2.7/pmg_tk/__init__.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk copying build/lib.linux-i686-2.7/pmg_tk/volume.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk creating /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/startup copying build/lib.linux-i686-2.7/pmg_tk/startup/__init__.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/startup copying build/lib.linux-i686-2.7/pmg_tk/startup/apbs_tools.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/startup copying build/lib.linux-i686-2.7/pmg_tk/startup/remote_pdb_load.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/startup creating /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins creating /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins/normal copying build/lib.linux-i686-2.7/pmg_tk/skins/normal/ModalWindow.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins/normal copying build/lib.linux-i686-2.7/pmg_tk/skins/normal/__init__.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins/normal copying build/lib.linux-i686-2.7/pmg_tk/skins/normal/builder.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins/normal copying build/lib.linux-i686-2.7/pmg_tk/skins/__init__.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins creating /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins/demo copying build/lib.linux-i686-2.7/pmg_tk/skins/demo/__init__.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins/demo creating /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy copying build/lib.linux-i686-2.7/chempy/__init__.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy copying build/lib.linux-i686-2.7/chempy/arc.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy copying build/lib.linux-i686-2.7/chempy/bond_amber.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy copying build/lib.linux-i686-2.7/chempy/bond_mmff.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy copying build/lib.linux-i686-2.7/chempy/bonds.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy copying build/lib.linux-i686-2.7/chempy/brick.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy copying build/lib.linux-i686-2.7/chempy/cc1.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy copying build/lib.linux-i686-2.7/chempy/cex.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy copying build/lib.linux-i686-2.7/chempy/charge.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy copying build/lib.linux-i686-2.7/chempy/cif.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy copying build/lib.linux-i686-2.7/chempy/cpv.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy copying build/lib.linux-i686-2.7/chempy/dictdb.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy copying build/lib.linux-i686-2.7/chempy/gamess1.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy copying build/lib.linux-i686-2.7/chempy/gms.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy copying build/lib.linux-i686-2.7/chempy/hetatm.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy copying build/lib.linux-i686-2.7/chempy/io.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy copying build/lib.linux-i686-2.7/chempy/lst.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy copying build/lib.linux-i686-2.7/chempy/mae.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy copying build/lib.linux-i686-2.7/chempy/map.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy copying build/lib.linux-i686-2.7/chempy/mass.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy copying build/lib.linux-i686-2.7/chempy/mmd.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy copying build/lib.linux-i686-2.7/chempy/models.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy copying build/lib.linux-i686-2.7/chempy/mol.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy copying build/lib.linux-i686-2.7/chempy/mol2.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy copying build/lib.linux-i686-2.7/chempy/neighbor.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy copying build/lib.linux-i686-2.7/chempy/pdb.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy copying build/lib.linux-i686-2.7/chempy/pkl.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy copying build/lib.linux-i686-2.7/chempy/place.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy copying build/lib.linux-i686-2.7/chempy/protein.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy copying build/lib.linux-i686-2.7/chempy/protein_amber.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy copying build/lib.linux-i686-2.7/chempy/protein_amber99.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy copying build/lib.linux-i686-2.7/chempy/protein_mmff.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy copying build/lib.linux-i686-2.7/chempy/protein_residues.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy copying build/lib.linux-i686-2.7/chempy/sdf.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy copying build/lib.linux-i686-2.7/chempy/solvate.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy copying build/lib.linux-i686-2.7/chempy/water_amber.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy copying build/lib.linux-i686-2.7/chempy/water_residues.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy copying build/lib.linux-i686-2.7/chempy/xyz.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy creating /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/bmin copying build/lib.linux-i686-2.7/chempy/bmin/__init__.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/bmin copying build/lib.linux-i686-2.7/chempy/bmin/commands.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/bmin copying build/lib.linux-i686-2.7/chempy/bmin/realtime.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/bmin copying build/lib.linux-i686-2.7/chempy/bmin/state.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/bmin copying build/lib.linux-i686-2.7/chempy/bmin/util.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/bmin creating /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/champ copying build/lib.linux-i686-2.7/chempy/champ/_champ.so -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/champ copying build/lib.linux-i686-2.7/chempy/champ/__init__.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/champ copying build/lib.linux-i686-2.7/chempy/champ/amber99.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/champ copying build/lib.linux-i686-2.7/chempy/champ/assign.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/champ copying build/lib.linux-i686-2.7/chempy/champ/formal_charges.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/champ creating /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/fragments copying build/lib.linux-i686-2.7/chempy/fragments/__init__.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/fragments creating /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/fast copying build/lib.linux-i686-2.7/chempy/fast/__init__.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/fast creating /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/mmtf copying build/lib.linux-i686-2.7/chempy/mmtf/__init__.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/mmtf copying build/lib.linux-i686-2.7/chempy/mmtf/io.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/mmtf creating /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/tinker copying build/lib.linux-i686-2.7/chempy/tinker/__init__.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/tinker copying build/lib.linux-i686-2.7/chempy/tinker/amber.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/tinker copying build/lib.linux-i686-2.7/chempy/tinker/keyword.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/tinker copying build/lib.linux-i686-2.7/chempy/tinker/realtime.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/tinker copying build/lib.linux-i686-2.7/chempy/tinker/state.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/tinker creating /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol copying build/lib.linux-i686-2.7/pymol/_cmd.so -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol creating /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins copying build/lib.linux-i686-2.7/pymol/plugins/__init__.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins copying build/lib.linux-i686-2.7/pymol/plugins/installation.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins copying build/lib.linux-i686-2.7/pymol/plugins/legacysupport.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins copying build/lib.linux-i686-2.7/pymol/plugins/managergui.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins copying build/lib.linux-i686-2.7/pymol/plugins/repository.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins copying build/lib.linux-i686-2.7/pymol/__init__.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol copying build/lib.linux-i686-2.7/pymol/__main__.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol copying build/lib.linux-i686-2.7/pymol/api.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol copying build/lib.linux-i686-2.7/pymol/callback.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol copying build/lib.linux-i686-2.7/pymol/cgo.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol copying build/lib.linux-i686-2.7/pymol/checking.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol copying build/lib.linux-i686-2.7/pymol/cmd.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol copying build/lib.linux-i686-2.7/pymol/colorramping.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol copying build/lib.linux-i686-2.7/pymol/commanding.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol copying build/lib.linux-i686-2.7/pymol/completing.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol copying build/lib.linux-i686-2.7/pymol/computing.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol copying build/lib.linux-i686-2.7/pymol/constants.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol copying build/lib.linux-i686-2.7/pymol/constants_palette.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol copying build/lib.linux-i686-2.7/pymol/controlling.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol copying build/lib.linux-i686-2.7/pymol/creating.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol copying build/lib.linux-i686-2.7/pymol/editing.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol copying build/lib.linux-i686-2.7/pymol/editor.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol copying build/lib.linux-i686-2.7/pymol/experimenting.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol copying build/lib.linux-i686-2.7/pymol/exporting.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol copying build/lib.linux-i686-2.7/pymol/externing.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol copying build/lib.linux-i686-2.7/pymol/feedingback.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol copying build/lib.linux-i686-2.7/pymol/fitting.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol copying build/lib.linux-i686-2.7/pymol/gui.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol copying build/lib.linux-i686-2.7/pymol/headering.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol copying build/lib.linux-i686-2.7/pymol/helping.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol copying build/lib.linux-i686-2.7/pymol/importing.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol copying build/lib.linux-i686-2.7/pymol/internal.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol copying build/lib.linux-i686-2.7/pymol/invocation.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol copying build/lib.linux-i686-2.7/pymol/keyboard.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol copying build/lib.linux-i686-2.7/pymol/keywords.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol copying build/lib.linux-i686-2.7/pymol/locking.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol copying build/lib.linux-i686-2.7/pymol/m4x.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol copying build/lib.linux-i686-2.7/pymol/menu.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol copying build/lib.linux-i686-2.7/pymol/monitoring.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol copying build/lib.linux-i686-2.7/pymol/morphing.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol copying build/lib.linux-i686-2.7/pymol/movie.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol copying build/lib.linux-i686-2.7/pymol/moving.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol copying build/lib.linux-i686-2.7/pymol/parser.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol copying build/lib.linux-i686-2.7/pymol/parsing.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol copying build/lib.linux-i686-2.7/pymol/povray.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol copying build/lib.linux-i686-2.7/pymol/preset.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol copying build/lib.linux-i686-2.7/pymol/querying.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol copying build/lib.linux-i686-2.7/pymol/rpc.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol copying build/lib.linux-i686-2.7/pymol/selecting.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol copying build/lib.linux-i686-2.7/pymol/selector.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol copying build/lib.linux-i686-2.7/pymol/setting.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol copying build/lib.linux-i686-2.7/pymol/shortcut.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol copying build/lib.linux-i686-2.7/pymol/util.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol copying build/lib.linux-i686-2.7/pymol/vfont.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol copying build/lib.linux-i686-2.7/pymol/viewing.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol copying build/lib.linux-i686-2.7/pymol/wizarding.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol copying build/lib.linux-i686-2.7/pymol/xray.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol copying build/lib.linux-i686-2.7/pymol/xwin.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol creating /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard copying build/lib.linux-i686-2.7/pymol/wizard/__init__.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard copying build/lib.linux-i686-2.7/pymol/wizard/annotation.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard copying build/lib.linux-i686-2.7/pymol/wizard/appearance.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard copying build/lib.linux-i686-2.7/pymol/wizard/benchmark.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard copying build/lib.linux-i686-2.7/pymol/wizard/box.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard copying build/lib.linux-i686-2.7/pymol/wizard/charge.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard copying build/lib.linux-i686-2.7/pymol/wizard/cleanup.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard copying build/lib.linux-i686-2.7/pymol/wizard/command.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard copying build/lib.linux-i686-2.7/pymol/wizard/demo.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard copying build/lib.linux-i686-2.7/pymol/wizard/density.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard copying build/lib.linux-i686-2.7/pymol/wizard/distance.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard copying build/lib.linux-i686-2.7/pymol/wizard/dragging.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard copying build/lib.linux-i686-2.7/pymol/wizard/fedora.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard copying build/lib.linux-i686-2.7/pymol/wizard/filter.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard copying build/lib.linux-i686-2.7/pymol/wizard/label.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard copying build/lib.linux-i686-2.7/pymol/wizard/measurement.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard copying build/lib.linux-i686-2.7/pymol/wizard/message.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard copying build/lib.linux-i686-2.7/pymol/wizard/mutagenesis.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard copying build/lib.linux-i686-2.7/pymol/wizard/pair_fit.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard copying build/lib.linux-i686-2.7/pymol/wizard/pseudoatom.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard copying build/lib.linux-i686-2.7/pymol/wizard/renaming.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard copying build/lib.linux-i686-2.7/pymol/wizard/sculpting.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard copying build/lib.linux-i686-2.7/pymol/wizard/security.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard copying build/lib.linux-i686-2.7/pymol/wizard/stereodemo.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard copying build/lib.linux-i686-2.7/pymol/wizard/toggle.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard creating /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/contrib copying build/lib.linux-i686-2.7/pymol/contrib/__init__.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/contrib creating /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/opengl copying build/lib.linux-i686-2.7/pymol/opengl/__init__.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/opengl creating /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/opengl/gl copying build/lib.linux-i686-2.7/pymol/opengl/gl/__init__.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/opengl/gl creating /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/opengl/glut copying build/lib.linux-i686-2.7/pymol/opengl/glut/__init__.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/opengl/glut creating /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/opengl/glu copying build/lib.linux-i686-2.7/pymol/opengl/glu/__init__.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/opengl/glu creating /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/embed creating /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/embed/wxpymol copying build/lib.linux-i686-2.7/pymol/embed/wxpymol/__init__.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/embed/wxpymol copying build/lib.linux-i686-2.7/pymol/embed/__init__.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/embed creating /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/embed/epymol copying build/lib.linux-i686-2.7/pymol/embed/epymol/__init__.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/embed/epymol byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol2/__init__.py to __init__.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol2/cmd2.py to cmd2.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/web/examples/__init__.py to __init__.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/web/examples/justhttpd.py to justhttpd.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/web/__init__.py to __init__.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/web/pymolhttpd.py to pymolhttpd.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_wx/__init__.py to __init__.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/ColorEditor.py to ColorEditor.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/Demo.py to Demo.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/PMGApp.py to PMGApp.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/PyMOLMapLoad.py to PyMOLMapLoad.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/SetEditor.py to SetEditor.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/Setting.py to Setting.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/TextEditor.py to TextEditor.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/__init__.py to __init__.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/volume.py to volume.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/startup/__init__.py to __init__.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/startup/apbs_tools.py to apbs_tools.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/startup/remote_pdb_load.py to remote_pdb_load.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins/normal/ModalWindow.py to ModalWindow.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins/normal/__init__.py to __init__.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins/normal/builder.py to builder.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins/__init__.py to __init__.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins/demo/__init__.py to __init__.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/__init__.py to __init__.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/arc.py to arc.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/bond_amber.py to bond_amber.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/bond_mmff.py to bond_mmff.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/bonds.py to bonds.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/brick.py to brick.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/cc1.py to cc1.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/cex.py to cex.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/charge.py to charge.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/cif.py to cif.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/cpv.py to cpv.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/dictdb.py to dictdb.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/gamess1.py to gamess1.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/gms.py to gms.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/hetatm.py to hetatm.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/io.py to io.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/lst.py to lst.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/mae.py to mae.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/map.py to map.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/mass.py to mass.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/mmd.py to mmd.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/models.py to models.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/mol.py to mol.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/mol2.py to mol2.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/neighbor.py to neighbor.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/pdb.py to pdb.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/pkl.py to pkl.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/place.py to place.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/protein.py to protein.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/protein_amber.py to protein_amber.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/protein_amber99.py to protein_amber99.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/protein_mmff.py to protein_mmff.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/protein_residues.py to protein_residues.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/sdf.py to sdf.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/solvate.py to solvate.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/water_amber.py to water_amber.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/water_residues.py to water_residues.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/xyz.py to xyz.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/bmin/__init__.py to __init__.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/bmin/commands.py to commands.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/bmin/realtime.py to realtime.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/bmin/state.py to state.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/bmin/util.py to util.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/champ/__init__.py to __init__.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/champ/amber99.py to amber99.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/champ/assign.py to assign.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/champ/formal_charges.py to formal_charges.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/fragments/__init__.py to __init__.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/fast/__init__.py to __init__.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/mmtf/__init__.py to __init__.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/mmtf/io.py to io.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/tinker/__init__.py to __init__.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/tinker/amber.py to amber.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/tinker/keyword.py to keyword.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/tinker/realtime.py to realtime.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/tinker/state.py to state.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/__init__.py to __init__.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/installation.py to installation.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/legacysupport.py to legacysupport.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui.py to managergui.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/repository.py to repository.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/__init__.py to __init__.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/__main__.py to __main__.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/api.py to api.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/callback.py to callback.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/cgo.py to cgo.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/checking.py to checking.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/cmd.py to cmd.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/colorramping.py to colorramping.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/commanding.py to commanding.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/completing.py to completing.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/computing.py to computing.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/constants.py to constants.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/constants_palette.py to constants_palette.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/controlling.py to controlling.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/creating.py to creating.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/editing.py to editing.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/editor.py to editor.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/experimenting.py to experimenting.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/exporting.py to exporting.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/externing.py to externing.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/feedingback.py to feedingback.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/fitting.py to fitting.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/gui.py to gui.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/headering.py to headering.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/helping.py to helping.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/importing.py to importing.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/internal.py to internal.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/invocation.py to invocation.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/keyboard.py to keyboard.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/keywords.py to keywords.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/locking.py to locking.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/m4x.py to m4x.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/menu.py to menu.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/monitoring.py to monitoring.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/morphing.py to morphing.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/movie.py to movie.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/moving.py to moving.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/parser.py to parser.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/parsing.py to parsing.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/povray.py to povray.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/preset.py to preset.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/querying.py to querying.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/rpc.py to rpc.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/selecting.py to selecting.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/selector.py to selector.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/setting.py to setting.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/shortcut.py to shortcut.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/util.py to util.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/vfont.py to vfont.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/viewing.py to viewing.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizarding.py to wizarding.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/xray.py to xray.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/xwin.py to xwin.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/__init__.py to __init__.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/annotation.py to annotation.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/appearance.py to appearance.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/benchmark.py to benchmark.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/box.py to box.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/charge.py to charge.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/cleanup.py to cleanup.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/command.py to command.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/demo.py to demo.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/density.py to density.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/distance.py to distance.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/dragging.py to dragging.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/fedora.py to fedora.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/filter.py to filter.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/label.py to label.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/measurement.py to measurement.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/message.py to message.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/mutagenesis.py to mutagenesis.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/pair_fit.py to pair_fit.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/pseudoatom.py to pseudoatom.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/renaming.py to renaming.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/sculpting.py to sculpting.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/security.py to security.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/stereodemo.py to stereodemo.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/toggle.py to toggle.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/contrib/__init__.py to __init__.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/opengl/__init__.py to __init__.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/opengl/gl/__init__.py to __init__.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/opengl/glut/__init__.py to __init__.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/opengl/glu/__init__.py to __init__.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/embed/wxpymol/__init__.py to __init__.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/embed/__init__.py to __init__.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/embed/epymol/__init__.py to __init__.pyc running install_egg_info Writing /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol-1.8.6.0-py2.7.egg-info creating /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path copying LICENSE -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path copying data -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/data copying test -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/test copying scripts -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/scripts copying examples -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples creating /usr/src/tmp/pymol-buildroot/usr/bin + for i in contrib/champ contrib/mmtf-c contrib/uiuc/plugins/include contrib/uiuc/plugins/molfile_plugin/src layer0 layer1 layer2 layer3 layer4 layer5 ov/src + mkdir -p /usr/src/tmp/pymol-buildroot/usr/include/pymol/contrib/champ + install -pm644 contrib/champ/champ.h contrib/champ/chiral.h contrib/champ/const.h contrib/champ/err2.h contrib/champ/feedback2.h contrib/champ/list.h contrib/champ/mac.h contrib/champ/os_memory.h contrib/champ/os_python.h contrib/champ/os_std.h contrib/champ/sort.h contrib/champ/strblock.h contrib/champ/vla.h /usr/src/tmp/pymol-buildroot/usr/include/pymol/contrib/champ/ + for i in contrib/champ contrib/mmtf-c contrib/uiuc/plugins/include contrib/uiuc/plugins/molfile_plugin/src layer0 layer1 layer2 layer3 layer4 layer5 ov/src + mkdir -p /usr/src/tmp/pymol-buildroot/usr/include/pymol/contrib/mmtf-c + install -pm644 contrib/mmtf-c/mmtf_parser.h contrib/mmtf-c/mmtf_parser_private.h /usr/src/tmp/pymol-buildroot/usr/include/pymol/contrib/mmtf-c/ + for i in contrib/champ contrib/mmtf-c contrib/uiuc/plugins/include contrib/uiuc/plugins/molfile_plugin/src layer0 layer1 layer2 layer3 layer4 layer5 ov/src + mkdir -p /usr/src/tmp/pymol-buildroot/usr/include/pymol/contrib/uiuc/plugins/include + install -pm644 contrib/uiuc/plugins/include/import_graphics_plugin.h contrib/uiuc/plugins/include/molfile_plugin.h contrib/uiuc/plugins/include/vmdconio.h contrib/uiuc/plugins/include/vmdplugin.h /usr/src/tmp/pymol-buildroot/usr/include/pymol/contrib/uiuc/plugins/include/ + for i in contrib/champ contrib/mmtf-c contrib/uiuc/plugins/include contrib/uiuc/plugins/molfile_plugin/src layer0 layer1 layer2 layer3 layer4 layer5 ov/src + mkdir -p /usr/src/tmp/pymol-buildroot/usr/include/pymol/contrib/uiuc/plugins/molfile_plugin/src + install -pm644 contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h contrib/uiuc/plugins/molfile_plugin/src/endianswap.h contrib/uiuc/plugins/molfile_plugin/src/fastio.h contrib/uiuc/plugins/molfile_plugin/src/fortread.h contrib/uiuc/plugins/molfile_plugin/src/gaussianplugin.h contrib/uiuc/plugins/molfile_plugin/src/hash.h contrib/uiuc/plugins/molfile_plugin/src/inthash.h contrib/uiuc/plugins/molfile_plugin/src/largefiles.h contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h contrib/uiuc/plugins/molfile_plugin/src/ply.h contrib/uiuc/plugins/molfile_plugin/src/ply_c.h contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h contrib/uiuc/plugins/molfile_plugin/src/readpdb.h contrib/uiuc/plugins/molfile_plugin/src/unit_conversion.h contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h contrib/uiuc/plugins/molfile_plugin/src/vmddir.h /usr/src/tmp/pymol-buildroot/usr/include/pymol/contrib/uiuc/plugins/molfile_plugin/src/ + for i in contrib/champ contrib/mmtf-c contrib/uiuc/plugins/include contrib/uiuc/plugins/molfile_plugin/src layer0 layer1 layer2 layer3 layer4 layer5 ov/src + mkdir -p /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0 + install -pm644 layer0/Base.h layer0/Block.h layer0/Crystal.h layer0/Debug.h layer0/Deferred.h layer0/Err.h layer0/Feedback.h layer0/Field.h layer0/File.h layer0/Isosurf.h layer0/Lex.h layer0/ListMacros.h layer0/Map.h layer0/Match.h layer0/Matrix.h layer0/MemoryCache.h layer0/MemoryDebug.h layer0/MyPNG.h layer0/OOMac.h layer0/Parse.h layer0/Pixmap.h layer0/PyMOLGlobals.h layer0/PyMOLOptions.h layer0/Queue.h layer0/ShaderMgr.h layer0/Sphere.h layer0/SphereData.h layer0/Tetsurf.h layer0/Texture.h layer0/Tracker.h layer0/Triangle.h layer0/Util.h layer0/Util2.h layer0/Vector.h layer0/Version.h layer0/Word.h layer0/lex_constants.h layer0/os_gl.h layer0/os_limits.h layer0/os_numpy.h layer0/os_predef.h layer0/os_proprietary.h layer0/os_python.h layer0/os_std.h layer0/os_time.h layer0/os_types.h layer0/os_unix.h layer0/unique_vla_ptr.h /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/ + for i in contrib/champ contrib/mmtf-c contrib/uiuc/plugins/include contrib/uiuc/plugins/molfile_plugin/src layer0 layer1 layer2 layer3 layer4 layer5 ov/src + mkdir -p /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1 + install -pm644 layer1/Basis.h layer1/ButMode.h layer1/CGO.h layer1/CGOStruct.h layer1/Character.h layer1/Color.h layer1/Control.h layer1/Extrude.h layer1/Font.h layer1/FontGLUT.h layer1/FontTTF.h layer1/FontTTF2.h layer1/FontType.h layer1/Movie.h layer1/Ortho.h layer1/P.h layer1/PConv.h layer1/PConvArgs.h layer1/Pop.h layer1/PyMOLObject.h layer1/Ray.h layer1/Rep.h layer1/Scene.h layer1/ScrollBar.h layer1/Seq.h layer1/Setting.h layer1/SettingInfo.h layer1/Shaker.h layer1/Symmetry.h layer1/Text.h layer1/TypeFace.h layer1/View.h layer1/Wizard.h /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/ + for i in contrib/champ contrib/mmtf-c contrib/uiuc/plugins/include contrib/uiuc/plugins/molfile_plugin/src layer0 layer1 layer2 layer3 layer4 layer5 ov/src + mkdir -p /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2 + install -pm644 layer2/AssemblyHelpers.h layer2/AtomInfo.h layer2/AtomInfoHistory.h layer2/BondTypeHistory.h layer2/CifBondDict.h layer2/CifFile.h layer2/CoordSet.h layer2/DistSet.h layer2/GadgetSet.h layer2/MmodTyping.h layer2/Mol2Typing.h layer2/MolV3000.h layer2/ObjectAlignment.h layer2/ObjectCGO.h layer2/ObjectCallback.h layer2/ObjectDist.h layer2/ObjectGadget.h layer2/ObjectGadgetRamp.h layer2/ObjectGroup.h layer2/ObjectMap.h layer2/ObjectMesh.h layer2/ObjectMolecule.h layer2/ObjectSlice.h layer2/ObjectSurface.h layer2/ObjectVolume.h layer2/RepAngle.h layer2/RepCartoon.h layer2/RepCylBond.h layer2/RepDihedral.h layer2/RepDistDash.h layer2/RepDistLabel.h layer2/RepDot.h layer2/RepEllipsoid.h layer2/RepLabel.h layer2/RepMesh.h layer2/RepNonbonded.h layer2/RepNonbondedSphere.h layer2/RepRibbon.h layer2/RepSphere.h layer2/RepSurface.h layer2/RepWireBond.h layer2/Sculpt.h layer2/SculptCache.h layer2/SideChainHelper.h layer2/VFont.h /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ + for i in contrib/champ contrib/mmtf-c contrib/uiuc/plugins/include contrib/uiuc/plugins/molfile_plugin/src layer0 layer1 layer2 layer3 layer4 layer5 ov/src + mkdir -p /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer3 + install -pm644 layer3/AtomIterators.h layer3/CifDataValueFormatter.h layer3/Editor.h layer3/Executive.h layer3/Executive_pre.h layer3/MoleculeExporter.h layer3/MovieScene.h layer3/PlugIOManager.h layer3/Seeker.h layer3/Selector.h layer3/SelectorDef.h /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer3/ + for i in contrib/champ contrib/mmtf-c contrib/uiuc/plugins/include contrib/uiuc/plugins/molfile_plugin/src layer0 layer1 layer2 layer3 layer4 layer5 ov/src + mkdir -p /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer4 + install -pm644 layer4/Cmd.h layer4/Export.h layer4/Menu.h layer4/PopUp.h /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer4/ + for i in contrib/champ contrib/mmtf-c contrib/uiuc/plugins/include contrib/uiuc/plugins/molfile_plugin/src layer0 layer1 layer2 layer3 layer4 layer5 ov/src + mkdir -p /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer5 + install -pm644 layer5/MacPyMOL.h layer5/PyMOL.h layer5/TestPyMOL.h layer5/main.h /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer5/ + for i in contrib/champ contrib/mmtf-c contrib/uiuc/plugins/include contrib/uiuc/plugins/molfile_plugin/src layer0 layer1 layer2 layer3 layer4 layer5 ov/src + mkdir -p /usr/src/tmp/pymol-buildroot/usr/include/pymol/ov/src + install -pm644 ov/src/OVContext.h ov/src/OVHeap.h ov/src/OVHeapArray.h ov/src/OVLexicon.h ov/src/OVOneToAny.h ov/src/OVOneToOne.h ov/src/OVRandom.h ov/src/OVreturns.h ov/src/ov_defines.h ov/src/ov_port.h ov/src/ov_status.h ov/src/ov_types.h ov/src/ov_utility.h /usr/src/tmp/pymol-buildroot/usr/include/pymol/ov/src/ + mkdir -p /usr/src/tmp/pymol-buildroot/usr/bin + cat + chmod +x /usr/src/tmp/pymol-buildroot/usr/bin/pymol + mkdir -pv /usr/src/tmp/pymol-buildroot/usr/share/doc/PyMOL mkdir: created directory '/usr/src/tmp/pymol-buildroot/usr/share' mkdir: created directory '/usr/src/tmp/pymol-buildroot/usr/share/doc' mkdir: created directory '/usr/src/tmp/pymol-buildroot/usr/share/doc/PyMOL' + cp PymolRef.pdf /usr/src/tmp/pymol-buildroot/usr/share/doc/PyMOL/ + /usr/lib/rpm/brp-alt Cleaning files in /usr/src/tmp/pymol-buildroot (auto) mode of './usr/lib/python2.7/site-packages/pymol/_cmd.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib/python2.7/site-packages/chempy/champ/_champ.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) Verifying and fixing files in /usr/src/tmp/pymol-buildroot (binconfig,pkgconfig,libtool,desktop) Checking contents of files in /usr/src/tmp/pymol-buildroot/ (default) Compressing files in /usr/src/tmp/pymol-buildroot (auto) Adjusting library links in /usr/src/tmp/pymol-buildroot ./usr/lib: Verifying ELF objects in /usr/src/tmp/pymol-buildroot (arch=normal,fhs=normal,lfs=relaxed,lint=relaxed,rpath=normal,stack=normal,textrel=normal,unresolved=normal) verify-elf: WARNING: ./usr/lib/python2.7/site-packages/pymol/_cmd.so: uses non-LFS functions: __fxstat __lxstat __xstat fopen ftello lseek open readdir Bytecompiling python modules in /usr/src/tmp/pymol-buildroot using /usr/bin/python2.7 unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/bmin/__init__.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/bmin/commands.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/bmin/realtime.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/bmin/state.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/bmin/util.pyc compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/bmin/__init__.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/bmin/commands.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/bmin/realtime.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/bmin/state.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/bmin/util.py unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/champ/__init__.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/champ/amber99.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/champ/assign.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/champ/formal_charges.pyc compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/champ/__init__.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/champ/amber99.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/champ/assign.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/champ/formal_charges.py unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/fast/__init__.pyc compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/fast/__init__.py unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/fragments/__init__.pyc compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/fragments/__init__.py unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/mmtf/__init__.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/mmtf/io.pyc compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/mmtf/__init__.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/mmtf/io.py unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/tinker/__init__.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/tinker/amber.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/tinker/keyword.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/tinker/realtime.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/tinker/state.pyc compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/tinker/__init__.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/tinker/amber.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/tinker/keyword.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/tinker/realtime.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/tinker/state.py unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/__init__.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/arc.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/bond_amber.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/bond_mmff.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/bonds.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/brick.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/cc1.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/cex.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/charge.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/cif.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/cpv.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/dictdb.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/gamess1.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/gms.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/hetatm.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/io.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/lst.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/mae.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/map.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/mass.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/mmd.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/models.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/mol.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/mol2.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/neighbor.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/pdb.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/pkl.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/place.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/protein.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/protein_amber.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/protein_amber99.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/protein_mmff.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/protein_residues.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/sdf.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/solvate.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/water_amber.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/water_residues.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/xyz.pyc compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/__init__.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/arc.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/bond_amber.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/bond_mmff.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/bonds.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/brick.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/cc1.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/cex.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/charge.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/cif.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/cpv.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/dictdb.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/gamess1.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/gms.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/hetatm.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/io.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/lst.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/mae.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/map.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/mass.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/mmd.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/models.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/mol.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/mol2.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/neighbor.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/pdb.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/pkl.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/place.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/protein.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/protein_amber.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/protein_amber99.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/protein_mmff.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/protein_residues.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/sdf.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/solvate.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/water_amber.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/water_residues.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/xyz.py unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins/demo/__init__.pyc compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins/demo/__init__.py unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins/normal/ModalWindow.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins/normal/__init__.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins/normal/builder.pyc compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins/normal/ModalWindow.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins/normal/__init__.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins/normal/builder.py unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins/__init__.pyc compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins/__init__.py unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/startup/__init__.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/startup/apbs_tools.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/startup/remote_pdb_load.pyc compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/startup/__init__.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/startup/apbs_tools.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/startup/remote_pdb_load.py unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/ColorEditor.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/Demo.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/PMGApp.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/PyMOLMapLoad.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/SetEditor.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/Setting.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/TextEditor.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/__init__.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/volume.pyc compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/ColorEditor.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/Demo.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/PMGApp.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/PyMOLMapLoad.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/SetEditor.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/Setting.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/TextEditor.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/__init__.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/volume.py unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_wx/__init__.pyc compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_wx/__init__.py unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/contrib/__init__.pyc compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/contrib/__init__.py unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/embed/epymol/__init__.pyc compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/embed/epymol/__init__.py unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/embed/wxpymol/__init__.pyc compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/embed/wxpymol/__init__.py unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/embed/__init__.pyc compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/embed/__init__.py unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/opengl/gl/__init__.pyc compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/opengl/gl/__init__.py unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/opengl/glu/__init__.pyc compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/opengl/glu/__init__.py unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/opengl/glut/__init__.pyc compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/opengl/glut/__init__.py unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/opengl/__init__.pyc compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/opengl/__init__.py unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/__init__.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/installation.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/legacysupport.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/repository.pyc compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/__init__.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/installation.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/legacysupport.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/repository.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/data/chempy/sidechains/generate1.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/data/chempy/sidechains/generate2.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/data/chempy/sidechains/sc_bb_dep.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/data/chempy/sidechains/sc_bb_ind.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/data/chempy/tinker/make99_simple.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/data/chempy/tinker/make_simple.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/data/demo/cgo03.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/chempy/generate_amber.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/chempy/generate_mmff.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/cookbook/build_peptide.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/cookbook/dali.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/cookbook/symsph.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/brick01.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/cgo01.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/cgo02.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/cgo03.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/cgo04.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/cgo05.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/cgo06.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/cgo07.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/cgo08.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/cgo_3Dtext01.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/cgo_axes.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/cgo_label_hack.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/cgo_plane.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/chempy_model01.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/chempy_model02.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/chempy_model03.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/click_ordered_list.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/count_molecules.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/extend_demo01.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/gl01.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/gl02.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/gl03.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/importing.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/link_demo.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/membrane.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/mutate02.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/my_ext_gui.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/particle01.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/particle02.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/pick_wiz.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/povray01.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/sele_wiz.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/start_pymol.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/syncmol.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/tkwindow.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/webgui01.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/webgui02.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/xmlrpc01.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/xmlrpc02.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/launching/launch.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/launching/launch_demo.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/launching/launch_no_tk.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/launching/launch_viewer1.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/launching/launch_viewer2.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/B01.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/B02.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/B03.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/B04.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/B05.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/B06.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/B07.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/B08.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/B09.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/B10.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/B11.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/C1050fitting.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/C1060controlling.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/C1100do.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/C2000returns.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/T01.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/T02.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/T03.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/T04.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/test/headerTest.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/test/trim.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/test/win.py unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/__init__.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/annotation.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/appearance.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/benchmark.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/box.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/charge.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/cleanup.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/command.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/demo.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/density.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/distance.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/dragging.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/fedora.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/filter.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/label.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/measurement.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/message.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/mutagenesis.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/pair_fit.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/pseudoatom.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/renaming.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/sculpting.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/security.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/stereodemo.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/toggle.pyc compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/__init__.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/annotation.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/appearance.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/benchmark.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/box.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/charge.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/cleanup.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/command.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/demo.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/density.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/distance.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/dragging.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/fedora.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/filter.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/label.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/measurement.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/message.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/mutagenesis.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/pair_fit.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/pseudoatom.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/renaming.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/sculpting.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/security.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/stereodemo.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/toggle.py unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/__init__.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/__main__.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/api.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/callback.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/cgo.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/checking.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/cmd.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/colorramping.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/commanding.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/completing.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/computing.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/constants.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/constants_palette.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/controlling.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/creating.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/editing.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/editor.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/experimenting.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/exporting.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/externing.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/feedingback.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/fitting.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/gui.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/headering.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/helping.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/importing.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/internal.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/invocation.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/keyboard.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/keywords.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/locking.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/m4x.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/menu.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/monitoring.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/morphing.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/movie.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/moving.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/parser.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/parsing.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/povray.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/preset.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/querying.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/rpc.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/selecting.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/selector.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/setting.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/shortcut.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/util.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/vfont.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/viewing.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizarding.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/xray.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/xwin.pyc compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/__init__.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/__main__.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/api.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/callback.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/cgo.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/checking.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/cmd.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/colorramping.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/commanding.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/completing.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/computing.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/constants.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/constants_palette.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/controlling.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/creating.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/editing.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/editor.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/experimenting.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/exporting.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/externing.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/feedingback.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/fitting.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/gui.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/headering.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/helping.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/importing.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/internal.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/invocation.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/keyboard.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/keywords.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/locking.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/m4x.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/menu.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/monitoring.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/morphing.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/movie.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/moving.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/parser.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/parsing.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/povray.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/preset.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/querying.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/rpc.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/selecting.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/selector.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/setting.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/shortcut.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/util.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/vfont.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/viewing.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizarding.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/xray.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/xwin.py unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol2/__init__.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol2/cmd2.pyc compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol2/__init__.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol2/cmd2.py unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/web/examples/__init__.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/web/examples/justhttpd.pyc compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/web/examples/__init__.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/web/examples/justhttpd.py unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/web/__init__.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/web/pymolhttpd.pyc compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/web/__init__.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/web/pymolhttpd.py Bytecompiling python modules with optimization in /usr/src/tmp/pymol-buildroot using /usr/bin/python2.7 -O compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/bmin/__init__.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/bmin/commands.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/bmin/realtime.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/bmin/state.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/bmin/util.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/champ/__init__.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/champ/amber99.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/champ/assign.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/champ/formal_charges.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/fast/__init__.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/fragments/__init__.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/mmtf/__init__.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/mmtf/io.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/tinker/__init__.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/tinker/amber.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/tinker/keyword.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/tinker/realtime.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/tinker/state.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/__init__.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/arc.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/bond_amber.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/bond_mmff.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/bonds.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/brick.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/cc1.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/cex.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/charge.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/cif.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/cpv.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/dictdb.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/gamess1.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/gms.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/hetatm.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/io.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/lst.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/mae.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/map.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/mass.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/mmd.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/models.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/mol.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/mol2.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/neighbor.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/pdb.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/pkl.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/place.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/protein.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/protein_amber.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/protein_amber99.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/protein_mmff.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/protein_residues.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/sdf.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/solvate.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/water_amber.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/water_residues.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/xyz.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins/demo/__init__.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins/normal/ModalWindow.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins/normal/__init__.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins/normal/builder.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins/__init__.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/startup/__init__.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/startup/apbs_tools.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/startup/remote_pdb_load.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/ColorEditor.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/Demo.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/PMGApp.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/PyMOLMapLoad.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/SetEditor.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/Setting.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/TextEditor.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/__init__.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/volume.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_wx/__init__.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/contrib/__init__.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/embed/epymol/__init__.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/embed/wxpymol/__init__.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/embed/__init__.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/opengl/gl/__init__.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/opengl/glu/__init__.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/opengl/glut/__init__.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/opengl/__init__.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/__init__.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/installation.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/legacysupport.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/repository.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/data/chempy/sidechains/generate1.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/data/chempy/sidechains/generate2.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/data/chempy/sidechains/sc_bb_dep.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/data/chempy/sidechains/sc_bb_ind.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/data/chempy/tinker/make99_simple.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/data/chempy/tinker/make_simple.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/data/demo/cgo03.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/chempy/generate_amber.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/chempy/generate_mmff.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/cookbook/build_peptide.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/cookbook/dali.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/cookbook/symsph.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/brick01.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/cgo01.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/cgo02.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/cgo03.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/cgo04.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/cgo05.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/cgo06.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/cgo07.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/cgo08.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/cgo_3Dtext01.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/cgo_axes.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/cgo_label_hack.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/cgo_plane.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/chempy_model01.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/chempy_model02.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/chempy_model03.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/click_ordered_list.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/count_molecules.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/extend_demo01.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/gl01.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/gl02.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/gl03.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/importing.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/link_demo.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/membrane.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/mutate02.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/my_ext_gui.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/particle01.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/particle02.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/pick_wiz.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/povray01.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/sele_wiz.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/start_pymol.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/syncmol.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/tkwindow.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/webgui01.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/webgui02.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/xmlrpc01.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/xmlrpc02.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/launching/launch.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/launching/launch_demo.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/launching/launch_no_tk.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/launching/launch_viewer1.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/launching/launch_viewer2.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/B01.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/B02.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/B03.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/B04.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/B05.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/B06.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/B07.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/B08.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/B09.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/B10.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/B11.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/C1050fitting.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/C1060controlling.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/C1100do.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/C2000returns.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/T01.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/T02.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/T03.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/T04.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/test/headerTest.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/test/trim.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/test/win.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/__init__.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/annotation.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/appearance.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/benchmark.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/box.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/charge.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/cleanup.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/command.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/demo.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/density.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/distance.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/dragging.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/fedora.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/filter.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/label.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/measurement.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/message.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/mutagenesis.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/pair_fit.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/pseudoatom.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/renaming.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/sculpting.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/security.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/stereodemo.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/toggle.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/__init__.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/__main__.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/api.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/callback.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/cgo.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/checking.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/cmd.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/colorramping.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/commanding.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/completing.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/computing.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/constants.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/constants_palette.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/controlling.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/creating.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/editing.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/editor.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/experimenting.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/exporting.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/externing.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/feedingback.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/fitting.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/gui.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/headering.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/helping.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/importing.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/internal.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/invocation.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/keyboard.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/keywords.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/locking.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/m4x.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/menu.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/monitoring.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/morphing.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/movie.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/moving.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/parser.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/parsing.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/povray.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/preset.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/querying.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/rpc.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/selecting.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/selector.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/setting.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/shortcut.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/util.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/vfont.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/viewing.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizarding.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/xray.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/xwin.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol2/__init__.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol2/cmd2.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/web/examples/__init__.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/web/examples/justhttpd.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/web/__init__.py compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/web/pymolhttpd.py Bytecompiling python3 modules in /usr/src/tmp/pymol-buildroot using /usr/bin/python3 Can't list '/usr/src/tmp/pymol-buildroot/usr/lib/python3/site-packages' Bytecompiling python3 modules with optimization in /usr/src/tmp/pymol-buildroot using /usr/bin/python3 -O Can't list '/usr/src/tmp/pymol-buildroot/usr/lib/python3/site-packages' Bytecompiling python3 modules with optimization-2 in /usr/src/tmp/pymol-buildroot using /usr/bin/python3 -OO Can't list '/usr/src/tmp/pymol-buildroot/usr/lib/python3/site-packages' Hardlinking identical .pyc and .opt-?.pyc files Hardlinking identical .pyc and .pyo files './usr/lib/python2.7/site-packages/pymol/xwin.pyo' => './usr/lib/python2.7/site-packages/pymol/xwin.pyc' './usr/lib/python2.7/site-packages/pymol/xray.pyo' => './usr/lib/python2.7/site-packages/pymol/xray.pyc' './usr/lib/python2.7/site-packages/pymol/wizarding.pyo' => './usr/lib/python2.7/site-packages/pymol/wizarding.pyc' './usr/lib/python2.7/site-packages/pymol/viewing.pyo' => './usr/lib/python2.7/site-packages/pymol/viewing.pyc' './usr/lib/python2.7/site-packages/pymol/vfont.pyo' => './usr/lib/python2.7/site-packages/pymol/vfont.pyc' './usr/lib/python2.7/site-packages/pymol/util.pyo' => './usr/lib/python2.7/site-packages/pymol/util.pyc' './usr/lib/python2.7/site-packages/pymol/shortcut.pyo' => './usr/lib/python2.7/site-packages/pymol/shortcut.pyc' './usr/lib/python2.7/site-packages/pymol/setting.pyo' => './usr/lib/python2.7/site-packages/pymol/setting.pyc' './usr/lib/python2.7/site-packages/pymol/selector.pyo' => './usr/lib/python2.7/site-packages/pymol/selector.pyc' './usr/lib/python2.7/site-packages/pymol/selecting.pyo' => './usr/lib/python2.7/site-packages/pymol/selecting.pyc' './usr/lib/python2.7/site-packages/pymol/rpc.pyo' => './usr/lib/python2.7/site-packages/pymol/rpc.pyc' './usr/lib/python2.7/site-packages/pymol/querying.pyo' => './usr/lib/python2.7/site-packages/pymol/querying.pyc' './usr/lib/python2.7/site-packages/pymol/preset.pyo' => './usr/lib/python2.7/site-packages/pymol/preset.pyc' './usr/lib/python2.7/site-packages/pymol/povray.pyo' => './usr/lib/python2.7/site-packages/pymol/povray.pyc' './usr/lib/python2.7/site-packages/pymol/parsing.pyo' => './usr/lib/python2.7/site-packages/pymol/parsing.pyc' './usr/lib/python2.7/site-packages/pymol/parser.pyo' => './usr/lib/python2.7/site-packages/pymol/parser.pyc' './usr/lib/python2.7/site-packages/pymol/moving.pyo' => './usr/lib/python2.7/site-packages/pymol/moving.pyc' './usr/lib/python2.7/site-packages/pymol/movie.pyo' => './usr/lib/python2.7/site-packages/pymol/movie.pyc' './usr/lib/python2.7/site-packages/pymol/morphing.pyo' => './usr/lib/python2.7/site-packages/pymol/morphing.pyc' './usr/lib/python2.7/site-packages/pymol/monitoring.pyo' => './usr/lib/python2.7/site-packages/pymol/monitoring.pyc' './usr/lib/python2.7/site-packages/pymol/menu.pyo' => './usr/lib/python2.7/site-packages/pymol/menu.pyc' './usr/lib/python2.7/site-packages/pymol/m4x.pyo' => './usr/lib/python2.7/site-packages/pymol/m4x.pyc' './usr/lib/python2.7/site-packages/pymol/locking.pyo' => './usr/lib/python2.7/site-packages/pymol/locking.pyc' './usr/lib/python2.7/site-packages/pymol/keywords.pyo' => './usr/lib/python2.7/site-packages/pymol/keywords.pyc' './usr/lib/python2.7/site-packages/pymol/keyboard.pyo' => './usr/lib/python2.7/site-packages/pymol/keyboard.pyc' './usr/lib/python2.7/site-packages/pymol/invocation.pyo' => './usr/lib/python2.7/site-packages/pymol/invocation.pyc' './usr/lib/python2.7/site-packages/pymol/internal.pyo' => './usr/lib/python2.7/site-packages/pymol/internal.pyc' './usr/lib/python2.7/site-packages/pymol/importing.pyo' => './usr/lib/python2.7/site-packages/pymol/importing.pyc' './usr/lib/python2.7/site-packages/pymol/helping.pyo' => './usr/lib/python2.7/site-packages/pymol/helping.pyc' './usr/lib/python2.7/site-packages/pymol/headering.pyo' => './usr/lib/python2.7/site-packages/pymol/headering.pyc' './usr/lib/python2.7/site-packages/pymol/gui.pyo' => './usr/lib/python2.7/site-packages/pymol/gui.pyc' './usr/lib/python2.7/site-packages/pymol/fitting.pyo' => './usr/lib/python2.7/site-packages/pymol/fitting.pyc' './usr/lib/python2.7/site-packages/pymol/feedingback.pyo' => './usr/lib/python2.7/site-packages/pymol/feedingback.pyc' './usr/lib/python2.7/site-packages/pymol/externing.pyo' => './usr/lib/python2.7/site-packages/pymol/externing.pyc' './usr/lib/python2.7/site-packages/pymol/exporting.pyo' => './usr/lib/python2.7/site-packages/pymol/exporting.pyc' './usr/lib/python2.7/site-packages/pymol/experimenting.pyo' => './usr/lib/python2.7/site-packages/pymol/experimenting.pyc' './usr/lib/python2.7/site-packages/pymol/editor.pyo' => './usr/lib/python2.7/site-packages/pymol/editor.pyc' './usr/lib/python2.7/site-packages/pymol/editing.pyo' => './usr/lib/python2.7/site-packages/pymol/editing.pyc' './usr/lib/python2.7/site-packages/pymol/creating.pyo' => './usr/lib/python2.7/site-packages/pymol/creating.pyc' './usr/lib/python2.7/site-packages/pymol/controlling.pyo' => './usr/lib/python2.7/site-packages/pymol/controlling.pyc' './usr/lib/python2.7/site-packages/pymol/constants_palette.pyo' => './usr/lib/python2.7/site-packages/pymol/constants_palette.pyc' './usr/lib/python2.7/site-packages/pymol/constants.pyo' => './usr/lib/python2.7/site-packages/pymol/constants.pyc' './usr/lib/python2.7/site-packages/pymol/computing.pyo' => './usr/lib/python2.7/site-packages/pymol/computing.pyc' './usr/lib/python2.7/site-packages/pymol/completing.pyo' => './usr/lib/python2.7/site-packages/pymol/completing.pyc' './usr/lib/python2.7/site-packages/pymol/commanding.pyo' => './usr/lib/python2.7/site-packages/pymol/commanding.pyc' './usr/lib/python2.7/site-packages/pymol/colorramping.pyo' => './usr/lib/python2.7/site-packages/pymol/colorramping.pyc' './usr/lib/python2.7/site-packages/pymol/cmd.pyo' => './usr/lib/python2.7/site-packages/pymol/cmd.pyc' './usr/lib/python2.7/site-packages/pymol/checking.pyo' => './usr/lib/python2.7/site-packages/pymol/checking.pyc' './usr/lib/python2.7/site-packages/pymol/cgo.pyo' => './usr/lib/python2.7/site-packages/pymol/cgo.pyc' './usr/lib/python2.7/site-packages/pymol/callback.pyo' => './usr/lib/python2.7/site-packages/pymol/callback.pyc' './usr/lib/python2.7/site-packages/pymol/api.pyo' => './usr/lib/python2.7/site-packages/pymol/api.pyc' './usr/lib/python2.7/site-packages/pymol/__main__.pyo' => './usr/lib/python2.7/site-packages/pymol/__main__.pyc' './usr/lib/python2.7/site-packages/pymol/__init__.pyo' => './usr/lib/python2.7/site-packages/pymol/__init__.pyc' './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/chempy/generate_mmff.pyo' => './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/chempy/generate_mmff.pyc' './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/chempy/generate_amber.pyo' => './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/chempy/generate_amber.pyc' './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/cookbook/symsph.pyo' => './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/cookbook/symsph.pyc' './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/cookbook/dali.pyo' => './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/cookbook/dali.pyc' './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/cookbook/build_peptide.pyo' => './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/cookbook/build_peptide.pyc' './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/xmlrpc02.pyo' => './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/xmlrpc02.pyc' './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/xmlrpc01.pyo' => './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/xmlrpc01.pyc' './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/webgui02.pyo' => './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/webgui02.pyc' './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/webgui01.pyo' => './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/webgui01.pyc' './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/tkwindow.pyo' => './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/tkwindow.pyc' './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/syncmol.pyo' => './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/syncmol.pyc' './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/start_pymol.pyo' => './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/start_pymol.pyc' './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/sele_wiz.pyo' => './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/sele_wiz.pyc' './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/povray01.pyo' => './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/povray01.pyc' './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/pick_wiz.pyo' => './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/pick_wiz.pyc' './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/particle02.pyo' => './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/particle02.pyc' './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/particle01.pyo' => './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/particle01.pyc' './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/my_ext_gui.pyo' => './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/my_ext_gui.pyc' './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/mutate02.pyo' => './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/mutate02.pyc' './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/membrane.pyo' => './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/membrane.pyc' './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/link_demo.pyo' => './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/link_demo.pyc' './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/importing.pyo' => './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/importing.pyc' './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/gl03.pyo' => './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/gl03.pyc' './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/gl02.pyo' => './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/gl02.pyc' './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/gl01.pyo' => './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/gl01.pyc' './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/extend_demo01.pyo' => './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/extend_demo01.pyc' './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/count_molecules.pyo' => './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/count_molecules.pyc' './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/click_ordered_list.pyo' => './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/click_ordered_list.pyc' './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/chempy_model03.pyo' => './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/chempy_model03.pyc' './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/chempy_model02.pyo' => './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/chempy_model02.pyc' './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/chempy_model01.pyo' => './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/chempy_model01.pyc' './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/cgo_plane.pyo' => './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/cgo_plane.pyc' './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/cgo_label_hack.pyo' => './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/cgo_label_hack.pyc' './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/cgo_axes.pyo' => './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/cgo_axes.pyc' './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/cgo_3Dtext01.pyo' => './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/cgo_3Dtext01.pyc' './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/cgo08.pyo' => './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/cgo08.pyc' './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/cgo07.pyo' => './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/cgo07.pyc' './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/cgo06.pyo' => './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/cgo06.pyc' './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/cgo05.pyo' => './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/cgo05.pyc' './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/cgo04.pyo' => './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/cgo04.pyc' './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/cgo03.pyo' => './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/cgo03.pyc' './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/cgo02.pyo' => './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/cgo02.pyc' './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/cgo01.pyo' => './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/cgo01.pyc' './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/brick01.pyo' => './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/brick01.pyc' './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/launching/launch_viewer2.pyo' => './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/launching/launch_viewer2.pyc' './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/launching/launch_viewer1.pyo' => './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/launching/launch_viewer1.pyc' './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/launching/launch_no_tk.pyo' => './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/launching/launch_no_tk.pyc' './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/launching/launch_demo.pyo' => './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/launching/launch_demo.pyc' './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/launching/launch.pyo' => './usr/lib/python2.7/site-packages/pymol/pymol_path/examples/launching/launch.pyc' './usr/lib/python2.7/site-packages/pymol/pymol_path/test/win.pyo' => './usr/lib/python2.7/site-packages/pymol/pymol_path/test/win.pyc' './usr/lib/python2.7/site-packages/pymol/pymol_path/test/trim.pyo' => './usr/lib/python2.7/site-packages/pymol/pymol_path/test/trim.pyc' './usr/lib/python2.7/site-packages/pymol/pymol_path/test/headerTest.pyo' => './usr/lib/python2.7/site-packages/pymol/pymol_path/test/headerTest.pyc' './usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/T04.pyo' => './usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/T04.pyc' './usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/T03.pyo' => './usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/T03.pyc' './usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/T02.pyo' => './usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/T02.pyc' './usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/T01.pyo' => './usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/T01.pyc' './usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/C2000returns.pyo' => './usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/C2000returns.pyc' './usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/C1100do.pyo' => './usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/C1100do.pyc' './usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/C1060controlling.pyo' => './usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/C1060controlling.pyc' './usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/C1050fitting.pyo' => './usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/C1050fitting.pyc' './usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/B11.pyo' => './usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/B11.pyc' './usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/B10.pyo' => './usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/B10.pyc' './usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/B09.pyo' => './usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/B09.pyc' './usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/B08.pyo' => './usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/B08.pyc' './usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/B07.pyo' => './usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/B07.pyc' './usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/B06.pyo' => './usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/B06.pyc' './usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/B05.pyo' => './usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/B05.pyc' './usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/B04.pyo' => './usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/B04.pyc' './usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/B03.pyo' => './usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/B03.pyc' './usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/B02.pyo' => './usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/B02.pyc' './usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/B01.pyo' => './usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/B01.pyc' './usr/lib/python2.7/site-packages/pymol/pymol_path/data/chempy/sidechains/sc_bb_ind.pyo' => './usr/lib/python2.7/site-packages/pymol/pymol_path/data/chempy/sidechains/sc_bb_ind.pyc' './usr/lib/python2.7/site-packages/pymol/pymol_path/data/chempy/sidechains/sc_bb_dep.pyo' => './usr/lib/python2.7/site-packages/pymol/pymol_path/data/chempy/sidechains/sc_bb_dep.pyc' './usr/lib/python2.7/site-packages/pymol/pymol_path/data/chempy/sidechains/generate2.pyo' => './usr/lib/python2.7/site-packages/pymol/pymol_path/data/chempy/sidechains/generate2.pyc' './usr/lib/python2.7/site-packages/pymol/pymol_path/data/chempy/sidechains/generate1.pyo' => './usr/lib/python2.7/site-packages/pymol/pymol_path/data/chempy/sidechains/generate1.pyc' './usr/lib/python2.7/site-packages/pymol/pymol_path/data/chempy/tinker/make_simple.pyo' => './usr/lib/python2.7/site-packages/pymol/pymol_path/data/chempy/tinker/make_simple.pyc' './usr/lib/python2.7/site-packages/pymol/pymol_path/data/chempy/tinker/make99_simple.pyo' => './usr/lib/python2.7/site-packages/pymol/pymol_path/data/chempy/tinker/make99_simple.pyc' './usr/lib/python2.7/site-packages/pymol/pymol_path/data/demo/cgo03.pyo' => './usr/lib/python2.7/site-packages/pymol/pymol_path/data/demo/cgo03.pyc' './usr/lib/python2.7/site-packages/pymol/embed/__init__.pyo' => './usr/lib/python2.7/site-packages/pymol/embed/__init__.pyc' './usr/lib/python2.7/site-packages/pymol/embed/epymol/__init__.pyo' => './usr/lib/python2.7/site-packages/pymol/embed/epymol/__init__.pyc' './usr/lib/python2.7/site-packages/pymol/embed/wxpymol/__init__.pyo' => './usr/lib/python2.7/site-packages/pymol/embed/wxpymol/__init__.pyc' './usr/lib/python2.7/site-packages/pymol/opengl/__init__.pyo' => './usr/lib/python2.7/site-packages/pymol/opengl/__init__.pyc' './usr/lib/python2.7/site-packages/pymol/opengl/glu/__init__.pyo' => './usr/lib/python2.7/site-packages/pymol/opengl/glu/__init__.pyc' './usr/lib/python2.7/site-packages/pymol/opengl/glut/__init__.pyo' => './usr/lib/python2.7/site-packages/pymol/opengl/glut/__init__.pyc' './usr/lib/python2.7/site-packages/pymol/opengl/gl/__init__.pyo' => './usr/lib/python2.7/site-packages/pymol/opengl/gl/__init__.pyc' './usr/lib/python2.7/site-packages/pymol/contrib/__init__.pyo' => './usr/lib/python2.7/site-packages/pymol/contrib/__init__.pyc' './usr/lib/python2.7/site-packages/pymol/wizard/toggle.pyo' => './usr/lib/python2.7/site-packages/pymol/wizard/toggle.pyc' './usr/lib/python2.7/site-packages/pymol/wizard/stereodemo.pyo' => './usr/lib/python2.7/site-packages/pymol/wizard/stereodemo.pyc' './usr/lib/python2.7/site-packages/pymol/wizard/security.pyo' => './usr/lib/python2.7/site-packages/pymol/wizard/security.pyc' './usr/lib/python2.7/site-packages/pymol/wizard/sculpting.pyo' => './usr/lib/python2.7/site-packages/pymol/wizard/sculpting.pyc' './usr/lib/python2.7/site-packages/pymol/wizard/renaming.pyo' => './usr/lib/python2.7/site-packages/pymol/wizard/renaming.pyc' './usr/lib/python2.7/site-packages/pymol/wizard/pseudoatom.pyo' => './usr/lib/python2.7/site-packages/pymol/wizard/pseudoatom.pyc' './usr/lib/python2.7/site-packages/pymol/wizard/pair_fit.pyo' => './usr/lib/python2.7/site-packages/pymol/wizard/pair_fit.pyc' './usr/lib/python2.7/site-packages/pymol/wizard/mutagenesis.pyo' => './usr/lib/python2.7/site-packages/pymol/wizard/mutagenesis.pyc' './usr/lib/python2.7/site-packages/pymol/wizard/message.pyo' => './usr/lib/python2.7/site-packages/pymol/wizard/message.pyc' './usr/lib/python2.7/site-packages/pymol/wizard/measurement.pyo' => './usr/lib/python2.7/site-packages/pymol/wizard/measurement.pyc' './usr/lib/python2.7/site-packages/pymol/wizard/label.pyo' => './usr/lib/python2.7/site-packages/pymol/wizard/label.pyc' './usr/lib/python2.7/site-packages/pymol/wizard/filter.pyo' => './usr/lib/python2.7/site-packages/pymol/wizard/filter.pyc' './usr/lib/python2.7/site-packages/pymol/wizard/fedora.pyo' => './usr/lib/python2.7/site-packages/pymol/wizard/fedora.pyc' './usr/lib/python2.7/site-packages/pymol/wizard/dragging.pyo' => './usr/lib/python2.7/site-packages/pymol/wizard/dragging.pyc' './usr/lib/python2.7/site-packages/pymol/wizard/distance.pyo' => './usr/lib/python2.7/site-packages/pymol/wizard/distance.pyc' './usr/lib/python2.7/site-packages/pymol/wizard/density.pyo' => './usr/lib/python2.7/site-packages/pymol/wizard/density.pyc' './usr/lib/python2.7/site-packages/pymol/wizard/demo.pyo' => './usr/lib/python2.7/site-packages/pymol/wizard/demo.pyc' './usr/lib/python2.7/site-packages/pymol/wizard/command.pyo' => './usr/lib/python2.7/site-packages/pymol/wizard/command.pyc' './usr/lib/python2.7/site-packages/pymol/wizard/cleanup.pyo' => './usr/lib/python2.7/site-packages/pymol/wizard/cleanup.pyc' './usr/lib/python2.7/site-packages/pymol/wizard/charge.pyo' => './usr/lib/python2.7/site-packages/pymol/wizard/charge.pyc' './usr/lib/python2.7/site-packages/pymol/wizard/box.pyo' => './usr/lib/python2.7/site-packages/pymol/wizard/box.pyc' './usr/lib/python2.7/site-packages/pymol/wizard/benchmark.pyo' => './usr/lib/python2.7/site-packages/pymol/wizard/benchmark.pyc' './usr/lib/python2.7/site-packages/pymol/wizard/appearance.pyo' => './usr/lib/python2.7/site-packages/pymol/wizard/appearance.pyc' './usr/lib/python2.7/site-packages/pymol/wizard/annotation.pyo' => './usr/lib/python2.7/site-packages/pymol/wizard/annotation.pyc' './usr/lib/python2.7/site-packages/pymol/wizard/__init__.pyo' => './usr/lib/python2.7/site-packages/pymol/wizard/__init__.pyc' './usr/lib/python2.7/site-packages/pymol/plugins/managergui.pyo' => './usr/lib/python2.7/site-packages/pymol/plugins/managergui.pyc' './usr/lib/python2.7/site-packages/pymol/plugins/legacysupport.pyo' => './usr/lib/python2.7/site-packages/pymol/plugins/legacysupport.pyc' './usr/lib/python2.7/site-packages/pymol/plugins/installation.pyo' => './usr/lib/python2.7/site-packages/pymol/plugins/installation.pyc' './usr/lib/python2.7/site-packages/chempy/xyz.pyo' => './usr/lib/python2.7/site-packages/chempy/xyz.pyc' './usr/lib/python2.7/site-packages/chempy/water_residues.pyo' => './usr/lib/python2.7/site-packages/chempy/water_residues.pyc' './usr/lib/python2.7/site-packages/chempy/water_amber.pyo' => './usr/lib/python2.7/site-packages/chempy/water_amber.pyc' './usr/lib/python2.7/site-packages/chempy/solvate.pyo' => './usr/lib/python2.7/site-packages/chempy/solvate.pyc' './usr/lib/python2.7/site-packages/chempy/sdf.pyo' => './usr/lib/python2.7/site-packages/chempy/sdf.pyc' './usr/lib/python2.7/site-packages/chempy/protein_residues.pyo' => './usr/lib/python2.7/site-packages/chempy/protein_residues.pyc' './usr/lib/python2.7/site-packages/chempy/protein_mmff.pyo' => './usr/lib/python2.7/site-packages/chempy/protein_mmff.pyc' './usr/lib/python2.7/site-packages/chempy/protein_amber99.pyo' => './usr/lib/python2.7/site-packages/chempy/protein_amber99.pyc' './usr/lib/python2.7/site-packages/chempy/protein_amber.pyo' => './usr/lib/python2.7/site-packages/chempy/protein_amber.pyc' './usr/lib/python2.7/site-packages/chempy/protein.pyo' => './usr/lib/python2.7/site-packages/chempy/protein.pyc' './usr/lib/python2.7/site-packages/chempy/place.pyo' => './usr/lib/python2.7/site-packages/chempy/place.pyc' './usr/lib/python2.7/site-packages/chempy/pkl.pyo' => './usr/lib/python2.7/site-packages/chempy/pkl.pyc' './usr/lib/python2.7/site-packages/chempy/pdb.pyo' => './usr/lib/python2.7/site-packages/chempy/pdb.pyc' './usr/lib/python2.7/site-packages/chempy/neighbor.pyo' => './usr/lib/python2.7/site-packages/chempy/neighbor.pyc' './usr/lib/python2.7/site-packages/chempy/mol2.pyo' => './usr/lib/python2.7/site-packages/chempy/mol2.pyc' './usr/lib/python2.7/site-packages/chempy/mol.pyo' => './usr/lib/python2.7/site-packages/chempy/mol.pyc' './usr/lib/python2.7/site-packages/chempy/models.pyo' => './usr/lib/python2.7/site-packages/chempy/models.pyc' './usr/lib/python2.7/site-packages/chempy/mmd.pyo' => './usr/lib/python2.7/site-packages/chempy/mmd.pyc' './usr/lib/python2.7/site-packages/chempy/mass.pyo' => './usr/lib/python2.7/site-packages/chempy/mass.pyc' './usr/lib/python2.7/site-packages/chempy/map.pyo' => './usr/lib/python2.7/site-packages/chempy/map.pyc' './usr/lib/python2.7/site-packages/chempy/mae.pyo' => './usr/lib/python2.7/site-packages/chempy/mae.pyc' './usr/lib/python2.7/site-packages/chempy/lst.pyo' => './usr/lib/python2.7/site-packages/chempy/lst.pyc' './usr/lib/python2.7/site-packages/chempy/io.pyo' => './usr/lib/python2.7/site-packages/chempy/io.pyc' './usr/lib/python2.7/site-packages/chempy/hetatm.pyo' => './usr/lib/python2.7/site-packages/chempy/hetatm.pyc' './usr/lib/python2.7/site-packages/chempy/gms.pyo' => './usr/lib/python2.7/site-packages/chempy/gms.pyc' './usr/lib/python2.7/site-packages/chempy/gamess1.pyo' => './usr/lib/python2.7/site-packages/chempy/gamess1.pyc' './usr/lib/python2.7/site-packages/chempy/dictdb.pyo' => './usr/lib/python2.7/site-packages/chempy/dictdb.pyc' './usr/lib/python2.7/site-packages/chempy/cpv.pyo' => './usr/lib/python2.7/site-packages/chempy/cpv.pyc' './usr/lib/python2.7/site-packages/chempy/cif.pyo' => './usr/lib/python2.7/site-packages/chempy/cif.pyc' './usr/lib/python2.7/site-packages/chempy/charge.pyo' => './usr/lib/python2.7/site-packages/chempy/charge.pyc' './usr/lib/python2.7/site-packages/chempy/cex.pyo' => './usr/lib/python2.7/site-packages/chempy/cex.pyc' './usr/lib/python2.7/site-packages/chempy/cc1.pyo' => './usr/lib/python2.7/site-packages/chempy/cc1.pyc' './usr/lib/python2.7/site-packages/chempy/bonds.pyo' => './usr/lib/python2.7/site-packages/chempy/bonds.pyc' './usr/lib/python2.7/site-packages/chempy/bond_mmff.pyo' => './usr/lib/python2.7/site-packages/chempy/bond_mmff.pyc' './usr/lib/python2.7/site-packages/chempy/bond_amber.pyo' => './usr/lib/python2.7/site-packages/chempy/bond_amber.pyc' './usr/lib/python2.7/site-packages/chempy/arc.pyo' => './usr/lib/python2.7/site-packages/chempy/arc.pyc' './usr/lib/python2.7/site-packages/chempy/__init__.pyo' => './usr/lib/python2.7/site-packages/chempy/__init__.pyc' './usr/lib/python2.7/site-packages/chempy/tinker/state.pyo' => './usr/lib/python2.7/site-packages/chempy/tinker/state.pyc' './usr/lib/python2.7/site-packages/chempy/tinker/realtime.pyo' => './usr/lib/python2.7/site-packages/chempy/tinker/realtime.pyc' './usr/lib/python2.7/site-packages/chempy/tinker/keyword.pyo' => './usr/lib/python2.7/site-packages/chempy/tinker/keyword.pyc' './usr/lib/python2.7/site-packages/chempy/tinker/amber.pyo' => './usr/lib/python2.7/site-packages/chempy/tinker/amber.pyc' './usr/lib/python2.7/site-packages/chempy/tinker/__init__.pyo' => './usr/lib/python2.7/site-packages/chempy/tinker/__init__.pyc' './usr/lib/python2.7/site-packages/chempy/mmtf/io.pyo' => './usr/lib/python2.7/site-packages/chempy/mmtf/io.pyc' './usr/lib/python2.7/site-packages/chempy/mmtf/__init__.pyo' => './usr/lib/python2.7/site-packages/chempy/mmtf/__init__.pyc' './usr/lib/python2.7/site-packages/chempy/fast/__init__.pyo' => './usr/lib/python2.7/site-packages/chempy/fast/__init__.pyc' './usr/lib/python2.7/site-packages/chempy/fragments/__init__.pyo' => './usr/lib/python2.7/site-packages/chempy/fragments/__init__.pyc' './usr/lib/python2.7/site-packages/chempy/champ/formal_charges.pyo' => './usr/lib/python2.7/site-packages/chempy/champ/formal_charges.pyc' './usr/lib/python2.7/site-packages/chempy/champ/assign.pyo' => './usr/lib/python2.7/site-packages/chempy/champ/assign.pyc' './usr/lib/python2.7/site-packages/chempy/champ/amber99.pyo' => './usr/lib/python2.7/site-packages/chempy/champ/amber99.pyc' './usr/lib/python2.7/site-packages/chempy/champ/__init__.pyo' => './usr/lib/python2.7/site-packages/chempy/champ/__init__.pyc' './usr/lib/python2.7/site-packages/chempy/bmin/util.pyo' => './usr/lib/python2.7/site-packages/chempy/bmin/util.pyc' './usr/lib/python2.7/site-packages/chempy/bmin/state.pyo' => './usr/lib/python2.7/site-packages/chempy/bmin/state.pyc' './usr/lib/python2.7/site-packages/chempy/bmin/realtime.pyo' => './usr/lib/python2.7/site-packages/chempy/bmin/realtime.pyc' './usr/lib/python2.7/site-packages/chempy/bmin/commands.pyo' => './usr/lib/python2.7/site-packages/chempy/bmin/commands.pyc' './usr/lib/python2.7/site-packages/chempy/bmin/__init__.pyo' => './usr/lib/python2.7/site-packages/chempy/bmin/__init__.pyc' './usr/lib/python2.7/site-packages/pmg_tk/volume.pyo' => './usr/lib/python2.7/site-packages/pmg_tk/volume.pyc' './usr/lib/python2.7/site-packages/pmg_tk/__init__.pyo' => './usr/lib/python2.7/site-packages/pmg_tk/__init__.pyc' './usr/lib/python2.7/site-packages/pmg_tk/TextEditor.pyo' => './usr/lib/python2.7/site-packages/pmg_tk/TextEditor.pyc' './usr/lib/python2.7/site-packages/pmg_tk/Setting.pyo' => './usr/lib/python2.7/site-packages/pmg_tk/Setting.pyc' './usr/lib/python2.7/site-packages/pmg_tk/SetEditor.pyo' => './usr/lib/python2.7/site-packages/pmg_tk/SetEditor.pyc' './usr/lib/python2.7/site-packages/pmg_tk/PyMOLMapLoad.pyo' => './usr/lib/python2.7/site-packages/pmg_tk/PyMOLMapLoad.pyc' './usr/lib/python2.7/site-packages/pmg_tk/PMGApp.pyo' => './usr/lib/python2.7/site-packages/pmg_tk/PMGApp.pyc' './usr/lib/python2.7/site-packages/pmg_tk/Demo.pyo' => './usr/lib/python2.7/site-packages/pmg_tk/Demo.pyc' './usr/lib/python2.7/site-packages/pmg_tk/ColorEditor.pyo' => './usr/lib/python2.7/site-packages/pmg_tk/ColorEditor.pyc' './usr/lib/python2.7/site-packages/pmg_tk/skins/__init__.pyo' => './usr/lib/python2.7/site-packages/pmg_tk/skins/__init__.pyc' './usr/lib/python2.7/site-packages/pmg_tk/skins/demo/__init__.pyo' => './usr/lib/python2.7/site-packages/pmg_tk/skins/demo/__init__.pyc' './usr/lib/python2.7/site-packages/pmg_tk/skins/normal/builder.pyo' => './usr/lib/python2.7/site-packages/pmg_tk/skins/normal/builder.pyc' './usr/lib/python2.7/site-packages/pmg_tk/skins/normal/__init__.pyo' => './usr/lib/python2.7/site-packages/pmg_tk/skins/normal/__init__.pyc' './usr/lib/python2.7/site-packages/pmg_tk/skins/normal/ModalWindow.pyo' => './usr/lib/python2.7/site-packages/pmg_tk/skins/normal/ModalWindow.pyc' './usr/lib/python2.7/site-packages/pmg_tk/startup/remote_pdb_load.pyo' => './usr/lib/python2.7/site-packages/pmg_tk/startup/remote_pdb_load.pyc' './usr/lib/python2.7/site-packages/pmg_tk/startup/apbs_tools.pyo' => './usr/lib/python2.7/site-packages/pmg_tk/startup/apbs_tools.pyc' './usr/lib/python2.7/site-packages/pmg_tk/startup/__init__.pyo' => './usr/lib/python2.7/site-packages/pmg_tk/startup/__init__.pyc' './usr/lib/python2.7/site-packages/pmg_wx/__init__.pyo' => './usr/lib/python2.7/site-packages/pmg_wx/__init__.pyc' './usr/lib/python2.7/site-packages/web/pymolhttpd.pyo' => './usr/lib/python2.7/site-packages/web/pymolhttpd.pyc' './usr/lib/python2.7/site-packages/web/__init__.pyo' => './usr/lib/python2.7/site-packages/web/__init__.pyc' './usr/lib/python2.7/site-packages/web/examples/justhttpd.pyo' => './usr/lib/python2.7/site-packages/web/examples/justhttpd.pyc' './usr/lib/python2.7/site-packages/web/examples/__init__.pyo' => './usr/lib/python2.7/site-packages/web/examples/__init__.pyc' './usr/lib/python2.7/site-packages/pymol2/cmd2.pyo' => './usr/lib/python2.7/site-packages/pymol2/cmd2.pyc' './usr/lib/python2.7/site-packages/pymol2/__init__.pyo' => './usr/lib/python2.7/site-packages/pymol2/__init__.pyc' Processing files: pymol-1.8.6.0-alt1 Executing(%doc): /bin/sh -e /usr/src/tmp/rpm-tmp.75408 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd pymol-1.8.6.0 + DOCDIR=/usr/src/tmp/pymol-buildroot/usr/share/doc/pymol-1.8.6.0 + export DOCDIR + rm -rf /usr/src/tmp/pymol-buildroot/usr/share/doc/pymol-1.8.6.0 + /bin/mkdir -p /usr/src/tmp/pymol-buildroot/usr/share/doc/pymol-1.8.6.0 + cp -prL ChangeLog AUTHORS README LICENSE COPYING /usr/src/tmp/pymol-buildroot/usr/share/doc/pymol-1.8.6.0 + chmod -R go-w /usr/src/tmp/pymol-buildroot/usr/share/doc/pymol-1.8.6.0 + chmod -R a+rX /usr/src/tmp/pymol-buildroot/usr/share/doc/pymol-1.8.6.0 + exit 0 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.1ux5tG find-provides: running scripts (alternatives,debuginfo,gir,lib,pam,perl,pkgconfig,python,python3,shell,tcl,typelib) Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.MNcRkY find-requires: running scripts (cpp,debuginfo,files,gir-js,gir-python,gir,lib,pam,perl,pkgconfig,pkgconfiglib,python,python3,rpmlib,shebang,shell,static,symlinks,tcl,typelib) Requires: python-module-pymol = 1.8.6.0-alt1, /bin/sh, /usr/bin/python2.7 Finding debuginfo files (using /usr/lib/rpm/find-debuginfo-files) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.vOEkTY Processing files: pymol-devel-1.8.6.0-alt1 Executing(%doc): /bin/sh -e /usr/src/tmp/rpm-tmp.73107 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd pymol-1.8.6.0 + DOCDIR=/usr/src/tmp/pymol-buildroot/usr/share/doc/pymol-devel-1.8.6.0 + export DOCDIR + rm -rf /usr/src/tmp/pymol-buildroot/usr/share/doc/pymol-devel-1.8.6.0 + /bin/mkdir -p /usr/src/tmp/pymol-buildroot/usr/share/doc/pymol-devel-1.8.6.0 + cp -prL DEVELOPERS PACKAGING /usr/src/tmp/pymol-buildroot/usr/share/doc/pymol-devel-1.8.6.0 + chmod -R go-w /usr/src/tmp/pymol-buildroot/usr/share/doc/pymol-devel-1.8.6.0 + chmod -R a+rX /usr/src/tmp/pymol-buildroot/usr/share/doc/pymol-devel-1.8.6.0 + exit 0 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.Q1Wn8O find-provides: running scripts (alternatives,debuginfo,gir,lib,pam,perl,pkgconfig,python,python3,shell,tcl,typelib) Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.mj3G0v find-requires: running scripts (cpp,debuginfo,files,gir-js,gir-python,gir,lib,pam,perl,pkgconfig,pkgconfiglib,python,python3,rpmlib,shebang,shell,static,symlinks,tcl,typelib) /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/P.h:20:9: fatal error: os_python.h: No such file or directory #include"os_python.h" ^~~~~~~~~~~~~ compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/P.h: cpp failed, trying c++ mode /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/P.h:20:9: fatal error: os_python.h: No such file or directory #include"os_python.h" ^~~~~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/P.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Lex.h:11:10: fatal error: OVLexicon.h: No such file or directory #include "OVLexicon.h" ^~~~~~~~~~~~~ compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Lex.h: cpp failed, trying c++ mode /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Lex.h:11:10: fatal error: OVLexicon.h: No such file or directory #include "OVLexicon.h" ^~~~~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Lex.h: cpp failed In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Vector.h:21:0, from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Map.h:24: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:123:10: fatal error: ov_types.h: No such file or directory #include "ov_types.h" ^~~~~~~~~~~~ compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Map.h: cpp failed, trying c++ mode In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Vector.h:21:0, from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Map.h:24: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:123:10: fatal error: ov_types.h: No such file or directory #include "ov_types.h" ^~~~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Map.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/CGO.h:20:9: fatal error: Base.h: No such file or directory #include"Base.h" ^~~~~~~~ compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/CGO.h: cpp failed, trying c++ mode /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/CGO.h:20:9: fatal error: Base.h: No such file or directory #include"Base.h" ^~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/CGO.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Pop.h:20:9: fatal error: Block.h: No such file or directory #include"Block.h" ^~~~~~~~~ compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Pop.h: cpp failed, trying c++ mode /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Pop.h:20:9: fatal error: Block.h: No such file or directory #include"Block.h" ^~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Pop.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Ray.h:20:9: fatal error: Base.h: No such file or directory #include"Base.h" ^~~~~~~~ compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Ray.h: cpp failed, trying c++ mode /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Ray.h:20:9: fatal error: Base.h: No such file or directory #include"Base.h" ^~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Ray.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Rep.h:20:9: fatal error: Base.h: No such file or directory #include"Base.h" ^~~~~~~~ compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Rep.h: cpp failed, trying c++ mode /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Rep.h:20:9: fatal error: Base.h: No such file or directory #include"Base.h" ^~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Rep.h: cpp failed In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Seq.h:20:0: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Ortho.h:28:9: fatal error: os_gl.h: No such file or directory #include"os_gl.h" ^~~~~~~~~ compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Seq.h: cpp failed, trying c++ mode In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Seq.h:20:0: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Ortho.h:28:9: fatal error: os_gl.h: No such file or directory #include"os_gl.h" ^~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Seq.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer4/Cmd.h:20:9: fatal error: os_python.h: No such file or directory #include"os_python.h" ^~~~~~~~~~~~~ compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer4/Cmd.h: cpp failed, trying c++ mode /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer4/Cmd.h:20:9: fatal error: os_python.h: No such file or directory #include"os_python.h" ^~~~~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer4/Cmd.h: cpp failed In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_limits.h:21:0, from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Base.h:21: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:123:10: fatal error: ov_types.h: No such file or directory #include "ov_types.h" ^~~~~~~~~~~~ compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Base.h: cpp failed, trying c++ mode In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_limits.h:21:0, from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Base.h:21: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:123:10: fatal error: ov_types.h: No such file or directory #include "ov_types.h" ^~~~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Base.h: cpp failed In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Util.h:21:0: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:123:10: fatal error: ov_types.h: No such file or directory #include "ov_types.h" ^~~~~~~~~~~~ compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Util.h: cpp failed, trying c++ mode In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Util.h:21:0: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:123:10: fatal error: ov_types.h: No such file or directory #include "ov_types.h" ^~~~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Util.h: cpp failed In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Word.h:22:0: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Lex.h:11:10: fatal error: OVLexicon.h: No such file or directory #include "OVLexicon.h" ^~~~~~~~~~~~~ compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Word.h: cpp failed, trying c++ mode In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Word.h:22:0: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Lex.h:11:10: fatal error: OVLexicon.h: No such file or directory #include "OVLexicon.h" ^~~~~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Word.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Font.h:21:9: fatal error: PyMOLGlobals.h: No such file or directory #include"PyMOLGlobals.h" ^~~~~~~~~~~~~~~~ compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Font.h: cpp failed, trying c++ mode /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Font.h:21:9: fatal error: PyMOLGlobals.h: No such file or directory #include"PyMOLGlobals.h" ^~~~~~~~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Font.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Text.h:20:9: fatal error: PyMOLGlobals.h: No such file or directory #include"PyMOLGlobals.h" ^~~~~~~~~~~~~~~~ compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Text.h: cpp failed, trying c++ mode /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Text.h:20:9: fatal error: PyMOLGlobals.h: No such file or directory #include"PyMOLGlobals.h" ^~~~~~~~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Text.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/View.h:20:9: fatal error: os_python.h: No such file or directory #include"os_python.h" ^~~~~~~~~~~~~ compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/View.h: cpp failed, trying c++ mode /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/View.h:20:9: fatal error: os_python.h: No such file or directory #include"os_python.h" ^~~~~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/View.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer4/Menu.h:20:9: fatal error: os_python.h: No such file or directory #include"os_python.h" ^~~~~~~~~~~~~ compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer4/Menu.h: cpp failed, trying c++ mode /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer4/Menu.h:20:9: fatal error: os_python.h: No such file or directory #include"os_python.h" ^~~~~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer4/Menu.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer5/main.h:36:9: fatal error: os_python.h: No such file or directory #include"os_python.h" ^~~~~~~~~~~~~ compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer5/main.h: cpp failed, trying c++ mode /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer5/main.h:36:9: fatal error: os_python.h: No such file or directory #include"os_python.h" ^~~~~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer5/main.h: cpp failed In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Field.h:21:0: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_python.h:34:9: fatal error: Python.h: No such file or directory #include"Python.h" ^~~~~~~~~~ compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Field.h: cpp failed, trying c++ mode In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Field.h:21:0: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_python.h:34:9: fatal error: Python.h: No such file or directory #include"Python.h" ^~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Field.h: cpp failed In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_std.h:21:0, from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/MemoryDebug.h:21, from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/OOMac.h:22: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:123:10: fatal error: ov_types.h: No such file or directory #include "ov_types.h" ^~~~~~~~~~~~ compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/OOMac.h: cpp failed, trying c++ mode In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_std.h:21:0, from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/MemoryDebug.h:21, from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/OOMac.h:22: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:123:10: fatal error: ov_types.h: No such file or directory #include "ov_types.h" ^~~~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/OOMac.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Util2.h:7:10: fatal error: string: No such file or directory #include ^~~~~~~~ compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Util2.h: cpp failed, trying c++ mode In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_gl.h:4:0: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:123:10: fatal error: ov_types.h: No such file or directory #include "ov_types.h" ^~~~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_gl.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Basis.h:20:9: fatal error: Map.h: No such file or directory #include"Map.h" ^~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Basis.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Color.h:20:9: fatal error: os_python.h: No such file or directory #include"os_python.h" ^~~~~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Color.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Movie.h:20:9: fatal error: os_python.h: No such file or directory #include"os_python.h" ^~~~~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Movie.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Ortho.h:28:9: fatal error: os_gl.h: No such file or directory #include"os_gl.h" ^~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Ortho.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/PConv.h:20:9: fatal error: os_python.h: No such file or directory #include"os_python.h" ^~~~~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/PConv.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Scene.h:21:9: fatal error: Base.h: No such file or directory #include"Base.h" ^~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Scene.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/VFont.h:20:9: fatal error: os_python.h: No such file or directory #include"os_python.h" ^~~~~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/VFont.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer4/PopUp.h:20:9: fatal error: os_python.h: No such file or directory #include"os_python.h" ^~~~~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer4/PopUp.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer5/PyMOL.h:50:10: fatal error: OVreturns.h: No such file or directory #include "OVreturns.h" ^~~~~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer5/PyMOL.h: cpp failed In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Vector.h:21:0, from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Sphere.h:21: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:123:10: fatal error: ov_types.h: No such file or directory #include "ov_types.h" ^~~~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Sphere.h: cpp failed In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Vector.h:21:0: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:123:10: fatal error: ov_types.h: No such file or directory #include "ov_types.h" ^~~~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Vector.h: cpp failed In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_std.h:21:0: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:123:10: fatal error: ov_types.h: No such file or directory #include "ov_types.h" ^~~~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_std.h: cpp failed In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Wizard.h:20:0: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Ortho.h:28:9: fatal error: os_gl.h: No such file or directory #include"os_gl.h" ^~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Wizard.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepDot.h:20:9: fatal error: Rep.h: No such file or directory #include"Rep.h" ^~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepDot.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/Sculpt.h:20:9: fatal error: Shaker.h: No such file or directory #include"Shaker.h" ^~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/Sculpt.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer3/Editor.h:20:9: fatal error: Ortho.h: No such file or directory #include"Ortho.h" ^~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer3/Editor.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer3/Seeker.h:20:9: fatal error: Ortho.h: No such file or directory #include"Ortho.h" ^~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer3/Seeker.h: cpp failed In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Vector.h:21:0, from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Crystal.h:20: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:123:10: fatal error: ov_types.h: No such file or directory #include "ov_types.h" ^~~~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Crystal.h: cpp failed In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Vector.h:21:0, from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Map.h:24, from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Isosurf.h:21: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:123:10: fatal error: ov_types.h: No such file or directory #include "ov_types.h" ^~~~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Isosurf.h: cpp failed In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Vector.h:21:0, from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Map.h:24, from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Tetsurf.h:21: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:123:10: fatal error: ov_types.h: No such file or directory #include "ov_types.h" ^~~~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Tetsurf.h: cpp failed In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_time.h:21:0: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:123:10: fatal error: ov_types.h: No such file or directory #include "ov_types.h" ^~~~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_time.h: cpp failed In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_unix.h:21:0: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:123:10: fatal error: ov_types.h: No such file or directory #include "ov_types.h" ^~~~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_unix.h: cpp failed In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/ButMode.h:20:0: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Ortho.h:28:9: fatal error: os_gl.h: No such file or directory #include"os_gl.h" ^~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/ButMode.h: cpp failed In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Control.h:20:0: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Ortho.h:28:9: fatal error: os_gl.h: No such file or directory #include"os_gl.h" ^~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Control.h: cpp failed In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Extrude.h:20:0: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Ray.h:20:9: fatal error: Base.h: No such file or directory #include"Base.h" ^~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Extrude.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Setting.h:23:9: fatal error: os_python.h: No such file or directory #include"os_python.h" ^~~~~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Setting.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/DistSet.h:20:9: fatal error: Base.h: No such file or directory #include"Base.h" ^~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/DistSet.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepMesh.h:20:9: fatal error: Rep.h: No such file or directory #include"Rep.h" ^~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepMesh.h: cpp failed In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Vector.h:21:0, from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Triangle.h:21: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:123:10: fatal error: ov_types.h: No such file or directory #include "ov_types.h" ^~~~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Triangle.h: cpp failed In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_numpy.h:4:0: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_python.h:34:9: fatal error: Python.h: No such file or directory #include"Python.h" ^~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_numpy.h: cpp failed In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_types.h:21:0: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:123:10: fatal error: ov_types.h: No such file or directory #include "ov_types.h" ^~~~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_types.h: cpp failed In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/FontGLUT.h:21:0: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Font.h:21:9: fatal error: PyMOLGlobals.h: No such file or directory #include"PyMOLGlobals.h" ^~~~~~~~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/FontGLUT.h: cpp failed In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/FontType.h:21:0: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Font.h:21:9: fatal error: PyMOLGlobals.h: No such file or directory #include"PyMOLGlobals.h" ^~~~~~~~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/FontType.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Symmetry.h:23:9: fatal error: Crystal.h: No such file or directory #include"Crystal.h" ^~~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Symmetry.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/TypeFace.h:20:10: fatal error: PyMOLGlobals.h: No such file or directory #include "PyMOLGlobals.h" ^~~~~~~~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/TypeFace.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/AtomInfo.h:20:9: fatal error: Rep.h: No such file or directory #include"Rep.h" ^~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/AtomInfo.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/CoordSet.h:20:9: fatal error: os_python.h: No such file or directory #include"os_python.h" ^~~~~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/CoordSet.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/MolV3000.h:7:10: fatal error: PyMOLGlobals.h: No such file or directory #include "PyMOLGlobals.h" ^~~~~~~~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/MolV3000.h: cpp failed In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepAngle.h:20:0: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/DistSet.h:20:9: fatal error: Base.h: No such file or directory #include"Base.h" ^~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepAngle.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepLabel.h:20:9: fatal error: Rep.h: No such file or directory #include"Rep.h" ^~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepLabel.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer3/Selector.h:20:9: fatal error: os_python.h: No such file or directory #include"os_python.h" ^~~~~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer3/Selector.h: cpp failed In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_gl.h:4:0, from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/ShaderMgr.h:19: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:123:10: fatal error: ov_types.h: No such file or directory #include "ov_types.h" ^~~~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/ShaderMgr.h: cpp failed In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_limits.h:21:0: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:123:10: fatal error: ov_types.h: No such file or directory #include "ov_types.h" ^~~~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_limits.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:123:10: fatal error: ov_types.h: No such file or directory #include "ov_types.h" ^~~~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_python.h:34:9: fatal error: Python.h: No such file or directory #include"Python.h" ^~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_python.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/CGOStruct.h:20:9: fatal error: Base.h: No such file or directory #include"Base.h" ^~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/CGOStruct.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Character.h:20:10: fatal error: Pixmap.h: No such file or directory #include "Pixmap.h" ^~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Character.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/PConvArgs.h:11:10: fatal error: os_python.h: No such file or directory #include "os_python.h" ^~~~~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/PConvArgs.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/ScrollBar.h:20:10: fatal error: PyMOLGlobals.h: No such file or directory #include "PyMOLGlobals.h" ^~~~~~~~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/ScrollBar.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/GadgetSet.h:20:9: fatal error: Rep.h: No such file or directory #include"Rep.h" ^~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/GadgetSet.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectCGO.h:20:9: fatal error: os_python.h: No such file or directory #include"os_python.h" ^~~~~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectCGO.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectMap.h:20:9: fatal error: os_python.h: No such file or directory #include"os_python.h" ^~~~~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectMap.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepRibbon.h:20:9: fatal error: Rep.h: No such file or directory #include"Rep.h" ^~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepRibbon.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepSphere.h:20:9: fatal error: Rep.h: No such file or directory #include"Rep.h" ^~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepSphere.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer3/Executive.h:20:9: fatal error: os_python.h: No such file or directory #include"os_python.h" ^~~~~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer3/Executive.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer5/TestPyMOL.h:20:9: fatal error: PyMOLGlobals.h: No such file or directory #include"PyMOLGlobals.h" ^~~~~~~~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer5/TestPyMOL.h: cpp failed In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_std.h:21:0, from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/MemoryDebug.h:21, from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/ListMacros.h:24: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:123:10: fatal error: ov_types.h: No such file or directory #include "ov_types.h" ^~~~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/ListMacros.h: cpp failed In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/MmodTyping.h:7:0: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/AtomInfo.h:20:9: fatal error: Rep.h: No such file or directory #include"Rep.h" ^~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/MmodTyping.h: cpp failed In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/Mol2Typing.h:7:0: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectMolecule.h:20:9: fatal error: os_python.h: No such file or directory #include"os_python.h" ^~~~~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/Mol2Typing.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectDist.h:20:9: fatal error: PyMOLObject.h: No such file or directory #include"PyMOLObject.h" ^~~~~~~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectDist.h: cpp failed In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectMesh.h:20:0: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectMap.h:20:9: fatal error: os_python.h: No such file or directory #include"os_python.h" ^~~~~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectMesh.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepCartoon.h:20:9: fatal error: Rep.h: No such file or directory #include"Rep.h" ^~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepCartoon.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepCylBond.h:20:9: fatal error: Rep.h: No such file or directory #include"Rep.h" ^~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepCylBond.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepSurface.h:20:9: fatal error: Rep.h: No such file or directory #include"Rep.h" ^~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepSurface.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer3/MovieScene.h:10:10: fatal error: os_python.h: No such file or directory #include "os_python.h" ^~~~~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer3/MovieScene.h: cpp failed In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_std.h:21:0, from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/MemoryDebug.h:21: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:123:10: fatal error: ov_types.h: No such file or directory #include "ov_types.h" ^~~~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/MemoryDebug.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/PyMOLObject.h:23:9: fatal error: Base.h: No such file or directory #include"Base.h" ^~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/PyMOLObject.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/CifBondDict.h:18:10: fatal error: os_std.h: No such file or directory #include "os_std.h" ^~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/CifBondDict.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectGroup.h:20:9: fatal error: os_python.h: No such file or directory #include"os_python.h" ^~~~~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectGroup.h: cpp failed In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectSlice.h:20:0: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectMap.h:20:9: fatal error: os_python.h: No such file or directory #include"os_python.h" ^~~~~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectSlice.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepDihedral.h:20:9: fatal error: Rep.h: No such file or directory #include"Rep.h" ^~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepDihedral.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepDistDash.h:20:9: fatal error: Rep.h: No such file or directory #include"Rep.h" ^~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepDistDash.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepWireBond.h:20:9: fatal error: Rep.h: No such file or directory #include"Rep.h" ^~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepWireBond.h: cpp failed In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/SculptCache.h:20:0: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/Sculpt.h:20:9: fatal error: Shaker.h: No such file or directory #include"Shaker.h" ^~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/SculptCache.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer3/SelectorDef.h:9:10: fatal error: os_std.h: No such file or directory #include "os_std.h" ^~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer3/SelectorDef.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectGadget.h:20:9: fatal error: os_python.h: No such file or directory #include"os_python.h" ^~~~~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectGadget.h: cpp failed In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectVolume.h:19:0: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectMap.h:20:9: fatal error: os_python.h: No such file or directory #include"os_python.h" ^~~~~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectVolume.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepDistLabel.h:20:9: fatal error: Rep.h: No such file or directory #include"Rep.h" ^~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepDistLabel.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepEllipsoid.h:20:9: fatal error: Rep.h: No such file or directory #include"Rep.h" ^~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepEllipsoid.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepNonbonded.h:20:9: fatal error: Rep.h: No such file or directory #include"Rep.h" ^~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepNonbonded.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectSurface.h:20:9: fatal error: os_gl.h: No such file or directory #include"os_gl.h" ^~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectSurface.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer3/AtomIterators.h:10:10: fatal error: PyMOLGlobals.h: No such file or directory #include "PyMOLGlobals.h" ^~~~~~~~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer3/AtomIterators.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer3/PlugIOManager.h:21:10: fatal error: PyMOLGlobals.h: No such file or directory #include "PyMOLGlobals.h" ^~~~~~~~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer3/PlugIOManager.h: cpp failed In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_proprietary.h:20:0: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:123:10: fatal error: ov_types.h: No such file or directory #include "ov_types.h" ^~~~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_proprietary.h: cpp failed In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_std.h:21:0, from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/MemoryDebug.h:21, from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/unique_vla_ptr.h:9: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:123:10: fatal error: ov_types.h: No such file or directory #include "ov_types.h" ^~~~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/unique_vla_ptr.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectCallback.h:20:9: fatal error: os_python.h: No such file or directory #include"os_python.h" ^~~~~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectCallback.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectMolecule.h:20:9: fatal error: os_python.h: No such file or directory #include"os_python.h" ^~~~~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectMolecule.h: cpp failed In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/AssemblyHelpers.h:11:0: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/AtomInfo.h:20:9: fatal error: Rep.h: No such file or directory #include"Rep.h" ^~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/AssemblyHelpers.h: cpp failed In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/AtomInfoHistory.h:22:0: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/AtomInfo.h:20:9: fatal error: Rep.h: No such file or directory #include"Rep.h" ^~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/AtomInfoHistory.h: cpp failed In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/BondTypeHistory.h:20:0: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/AtomInfo.h:20:9: fatal error: Rep.h: No such file or directory #include"Rep.h" ^~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/BondTypeHistory.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectAlignment.h:20:9: fatal error: os_python.h: No such file or directory #include"os_python.h" ^~~~~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectAlignment.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/SideChainHelper.h:8:10: fatal error: PyMOLGlobals.h: No such file or directory #include "PyMOLGlobals.h" ^~~~~~~~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/SideChainHelper.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectGadgetRamp.h:20:9: fatal error: os_python.h: No such file or directory #include"os_python.h" ^~~~~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectGadgetRamp.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer3/MoleculeExporter.h:7:10: fatal error: os_std.h: No such file or directory #include "os_std.h" ^~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer3/MoleculeExporter.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepNonbondedSphere.h:20:9: fatal error: Rep.h: No such file or directory #include"Rep.h" ^~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepNonbondedSphere.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer3/CifDataValueFormatter.h:12:10: fatal error: os_std.h: No such file or directory #include "os_std.h" ^~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer3/CifDataValueFormatter.h: cpp failed In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/contrib/champ/champ.h:20:0: /usr/src/tmp/pymol-buildroot/usr/include/pymol/contrib/champ/os_python.h:19:9: fatal error: Python.h: No such file or directory #include"Python.h" ^~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/contrib/champ/champ.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/contrib/champ/os_python.h:19:9: fatal error: Python.h: No such file or directory #include"Python.h" ^~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/contrib/champ/os_python.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:49:10: fatal error: molfile_plugin.h: No such file or directory #include "molfile_plugin.h" // needed for molfile return codes etc ^~~~~~~~~~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:30:10: fatal error: molfile_plugin.h: No such file or directory #include "molfile_plugin.h" ^~~~~~~~~~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:46:10: fatal error: molfile_plugin.h: No such file or directory #include "molfile_plugin.h" // needed for molfile return codes etc ^~~~~~~~~~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h:16:10: fatal error: molfile_plugin.h: No such file or directory #include "molfile_plugin.h" ^~~~~~~~~~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/contrib/uiuc/plugins/molfile_plugin/src/gaussianplugin.h:27:10: fatal error: molfile_plugin.h: No such file or directory #include "molfile_plugin.h" ^~~~~~~~~~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/contrib/uiuc/plugins/molfile_plugin/src/gaussianplugin.h: cpp failed python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/test/cyg: skipping sys python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/test/headerTest.py: skipping headering python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/test/headerTest.py: skipping sys python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/B01.py: skipping sys python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/B02.py: skipping sys python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/B03.py: skipping sys python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/B04.py: skipping sys python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/B05.py: skipping sys python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/B06.py: skipping sys python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/B07.py: skipping sys python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/B08.py: skipping sys python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/B09.py: skipping sys python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/B10.py: skipping sys python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/B11.py: skipping sys python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/test/run: skipping sys python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/test/show: skipping sys python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/test/trim.py: skipping sys python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/test/win.py: skipping sys shebang.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/test/vdiff: /bin/csh -> /bin/csh (raw, not installed) Requires: python-module-pymol = 1.8.6.0-alt1, python2.7(pymol), /bin/csh, /usr/bin/python, /usr/lib/python2.7/site-packages, libmsgpack-devel, python-modules, python2.7(chempy) Obsoletes: libpymol-devel Finding debuginfo files (using /usr/lib/rpm/find-debuginfo-files) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.LORGcX Processing files: python-module-pymol-1.8.6.0-alt1 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.W3Gj33 find-provides: running scripts (alternatives,debuginfo,gir,lib,pam,perl,pkgconfig,python,python3,shell,tcl,typelib) Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.FHrLKT find-requires: running scripts (cpp,debuginfo,files,gir-js,gir-python,gir,lib,pam,perl,pkgconfig,pkgconfiglib,python,python3,rpmlib,shebang,shell,static,symlinks,tcl,typelib) python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_wx/__init__.py: skipping sys python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/__init__.py: skipping sys python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/__init__.py: hiding __main__, which SEEMS TO BE SELF-SATISFIED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/__init__.py: line=64 IGNORE (for REQ=slight and deep=8) module=pymol /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/__init__.py: line=72 IGNORE (for REQ=slight and deep=8) module=string /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/__init__.py: line=81 IGNORE (for REQ=slight and deep=8) module=_thread /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/__init__.py: line=83 IGNORE (for REQ=slight and deep=8) module=thread /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/__init__.py: line=92 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/__init__.py: line=249 IGNORE (for REQ=slight and deep=12) module=socket /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/__init__.py: line=254 IGNORE (for REQ=slight and deep=8) module=pymol /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/__init__.py: line=351 IGNORE (for REQ=slight and deep=12) module=multiprocessing /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/__init__.py: line=385 IGNORE (for REQ=slight and deep=16) module=pymol /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/__init__.py: line=389 IGNORE (for REQ=slight and deep=16) module=pymol /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/__init__.py: line=435 IGNORE (for REQ=slight and deep=8) module=pymol /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/__init__.py: line=530 possible relative import from ., UNIMPLEMENTED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/__init__.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/__init__.py: line=537 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/__init__.py: line=542 IGNORE (for REQ=slight and deep=8) module=epymol /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/__main__.py: line=9 IGNORE (for REQ=slight and deep=8) module=pymol /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/api.py: line=4 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/api.py: line=31 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/api.py: line=32 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/api.py: line=55 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/api.py: line=61 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/api.py: line=62 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/api.py: line=77 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/api.py: line=78 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/api.py: line=89 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/api.py: line=151 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/api.py: line=159 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/api.py: line=160 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/api.py: line=174 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/api.py: line=175 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/api.py: line=243 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/api.py: line=246 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/api.py: line=253 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/api.py: line=261 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/api.py: line=262 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/api.py: line=273 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/api.py: line=289 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/api.py: line=296 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/api.py: line=300 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/api.py: line=301 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/api.py: line=333 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/api.py: line=334 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/api.py: line=389 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/api.py: line=390 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/api.py: line=407 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/api.py: line=412 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/api.py: line=413 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/api.py: line=422 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/api.py: line=436 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/api.py: line=440 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/api.py: line=450 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/api.py: line=451 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/api.py: line=452 possible relative import from ., UNIMPLEMENTED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/cgo.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/cgo.py: line=22 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/cgo.py: line=179 IGNORE (for REQ=slight and deep=16) module=urllib /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/cgo.py: line=181 IGNORE (for REQ=slight and deep=16) module=urllib /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/cgo.py: line=398 IGNORE (for REQ=slight and deep=8) module=math /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/cgo.py: line=467 IGNORE (for REQ=slight and deep=8) module=sys /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/cgo.py: line=556 IGNORE (for REQ=slight and deep=12) module=functools /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/cmd.py: line=95 IGNORE (for REQ=slight and deep=8) module=traceback /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/cmd.py: line=96 IGNORE (for REQ=slight and deep=8) module=sys /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/cmd.py: line=100 IGNORE (for REQ=slight and deep=12) module=re /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/cmd.py: line=101 IGNORE (for REQ=slight and deep=12) module=pymol /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/cmd.py: line=102 IGNORE (for REQ=slight and deep=12) module=string /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/cmd.py: line=103 IGNORE (for REQ=slight and deep=12) module=threading /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/cmd.py: line=104 IGNORE (for REQ=slight and deep=12) module=pymol /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/cmd.py: line=105 IGNORE (for REQ=slight and deep=12) module=os /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/cmd.py: line=106 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/cmd.py: line=107 IGNORE (for REQ=slight and deep=12) module=time /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/cmd.py: line=111 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/cmd.py: line=113 IGNORE (for REQ=slight and deep=12) module=chempy /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/cmd.py: line=119 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/cmd.py: line=120 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/cmd.py: line=127 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/cmd.py: line=128 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/cmd.py: line=160 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/cmd.py: line=166 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/cmd.py: line=171 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/cmd.py: line=172 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/cmd.py: line=177 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/cmd.py: line=222 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/cmd.py: line=230 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/cmd.py: line=234 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/cmd.py: line=344 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/cmd.py: line=352 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/cmd.py: line=368 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/cmd.py: line=402 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/cmd.py: line=416 IGNORE (for REQ=slight and deep=8) module=pymol python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/colorramping.py: skipping sys /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/colorramping.py: line=98 IGNORE (for REQ=slight and deep=16) module=random /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/colorramping.py: line=148 IGNORE (for REQ=slight and deep=12) module=pymol /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/colorramping.py: line=151 IGNORE (for REQ=slight and deep=20) module=Tkinter /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/colorramping.py: line=153 IGNORE (for REQ=slight and deep=20) module=tkinter /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/colorramping.py: line=174 IGNORE (for REQ=slight and deep=8) module=pymol /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/colorramping.py: line=175 IGNORE (for REQ=slight and deep=8) module=pmg_tk /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/colorramping.py: line=177 IGNORE (for REQ=slight and deep=12) module=Tkinter /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/colorramping.py: line=179 IGNORE (for REQ=slight and deep=12) module=tkinter /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/commanding.py: line=19 IGNORE (for REQ=slight and deep=8) module=sys /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/commanding.py: line=21 IGNORE (for REQ=slight and deep=12) module=thread /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/commanding.py: line=23 IGNORE (for REQ=slight and deep=12) module=_thread /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/commanding.py: line=24 IGNORE (for REQ=slight and deep=12) module=io /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/commanding.py: line=26 IGNORE (for REQ=slight and deep=8) module=re /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/commanding.py: line=27 IGNORE (for REQ=slight and deep=8) module=os /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/commanding.py: line=28 IGNORE (for REQ=slight and deep=8) module=time /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/commanding.py: line=29 IGNORE (for REQ=slight and deep=8) module=threading /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/commanding.py: line=30 IGNORE (for REQ=slight and deep=8) module=traceback /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/commanding.py: line=31 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/commanding.py: line=33 IGNORE (for REQ=slight and deep=8) module=pymol /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/commanding.py: line=35 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/commanding.py: line=610 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/completing.py: line=27 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/completing.py: line=48 IGNORE (for REQ=slight and deep=8) module=os /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/completing.py: line=48 IGNORE (for REQ=slight and deep=8) module=pymol /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/computing.py: line=18 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/computing.py: line=28 IGNORE (for REQ=slight and deep=8) module=chempy /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/computing.py: line=96 IGNORE (for REQ=slight and deep=15) module=freemol /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/constants.py: line=6 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/constants.py: line=8 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/constants.py: line=234 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/contrib/__init__.py: line=11 IGNORE (for REQ=slight and deep=8) module=Image /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/controlling.py: line=19 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/controlling.py: line=20 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/controlling.py: line=22 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/controlling.py: line=26 IGNORE (for REQ=slight and deep=12) module=pymol /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/controlling.py: line=28 IGNORE (for REQ=slight and deep=12) module=shortcut /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/creating.py: line=19 IGNORE (for REQ=slight and deep=8) module=pymol /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/creating.py: line=20 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/creating.py: line=21 IGNORE (for REQ=slight and deep=8) module=traceback /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/creating.py: line=23 IGNORE (for REQ=slight and deep=8) module=re /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/creating.py: line=24 IGNORE (for REQ=slight and deep=8) module=gzip /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/creating.py: line=25 IGNORE (for REQ=slight and deep=8) module=os /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/creating.py: line=26 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/creating.py: line=30 IGNORE (for REQ=slight and deep=8) module=tempfile /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/creating.py: line=31 IGNORE (for REQ=slight and deep=8) module=sys /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/creating.py: line=33 IGNORE (for REQ=slight and deep=8) module=chempy /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/creating.py: line=231 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/editing.py: line=19 IGNORE (for REQ=slight and deep=8) module=pymol /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/editing.py: line=20 IGNORE (for REQ=slight and deep=8) module=math /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/editing.py: line=21 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/editing.py: line=23 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/editing.py: line=26 IGNORE (for REQ=slight and deep=8) module=chempy python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/editor.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/editor.py: line=6 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/editor.py: line=7 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/editor.py: line=10 possible relative import from ., UNIMPLEMENTED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/embed/__init__.py: hiding _cmd, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/embed/__init__.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/embed/epymol/__init__.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/embed/wxpymol/__init__.py: hiding _cmd, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/embed/wxpymol/__init__.py: hiding __main__, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/embed/wxpymol/__init__.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/embed/wxpymol/__init__.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/embed/wxpymol/__init__.py: line=296 IGNORE (for REQ=slight and deep=11) module=threading /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/experimenting.py: line=17 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/experimenting.py: line=18 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/experimenting.py: line=21 IGNORE (for REQ=slight and deep=8) module=threading /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/experimenting.py: line=22 IGNORE (for REQ=slight and deep=8) module=pymol /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/experimenting.py: line=23 IGNORE (for REQ=slight and deep=8) module=string /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/experimenting.py: line=89 IGNORE (for REQ=slight and deep=12) module=chempy /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/experimenting.py: line=121 IGNORE (for REQ=slight and deep=12) module=chempy /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/exporting.py: line=18 IGNORE (for REQ=slight and deep=8) module=os /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/exporting.py: line=19 IGNORE (for REQ=slight and deep=8) module=sys /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/exporting.py: line=21 IGNORE (for REQ=slight and deep=12) module=thread /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/exporting.py: line=22 IGNORE (for REQ=slight and deep=12) module=cPickle /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/exporting.py: line=24 IGNORE (for REQ=slight and deep=12) module=_thread /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/exporting.py: line=25 IGNORE (for REQ=slight and deep=12) module=pickle /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/exporting.py: line=26 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/exporting.py: line=27 IGNORE (for REQ=slight and deep=8) module=re /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/exporting.py: line=28 IGNORE (for REQ=slight and deep=8) module=copy /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/exporting.py: line=30 IGNORE (for REQ=slight and deep=8) module=pymol /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/exporting.py: line=32 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/exporting.py: line=33 IGNORE (for REQ=slight and deep=8) module=chempy /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/exporting.py: line=34 IGNORE (for REQ=slight and deep=8) module=chempy /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/exporting.py: line=35 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/exporting.py: line=38 IGNORE (for REQ=slight and deep=8) module=traceback /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/exporting.py: line=425 IGNORE (for REQ=slight and deep=20) module=zlib /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/exporting.py: line=566 IGNORE (for REQ=slight and deep=12) module=pymol /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/exporting.py: line=683 IGNORE (for REQ=slight and deep=12) module=pymol /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/exporting.py: line=725 IGNORE (for REQ=slight and deep=16) module=inspect /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/exporting.py: line=755 IGNORE (for REQ=slight and deep=20) module=gzip /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/exporting.py: line=760 IGNORE (for REQ=slight and deep=24) module=bz2 /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/exporting.py: line=824 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/externing.py: line=19 IGNORE (for REQ=slight and deep=8) module=os /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/externing.py: line=20 IGNORE (for REQ=slight and deep=8) module=pymol /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/externing.py: line=21 IGNORE (for REQ=slight and deep=8) module=string /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/externing.py: line=22 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/externing.py: line=23 IGNORE (for REQ=slight and deep=8) module=threading /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/externing.py: line=25 IGNORE (for REQ=slight and deep=8) module=traceback /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/externing.py: line=27 IGNORE (for REQ=slight and deep=8) module=glob /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/externing.py: line=28 possible relative import from ., UNIMPLEMENTED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/feedingback.py: skipping sys /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/feedingback.py: line=6 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/feedingback.py: line=7 possible relative import from ., UNIMPLEMENTED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/feedingback.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/fitting.py: line=20 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/fitting.py: line=21 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/fitting.py: line=22 IGNORE (for REQ=slight and deep=8) module=os /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/fitting.py: line=23 IGNORE (for REQ=slight and deep=8) module=pymol /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/fitting.py: line=25 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/fitting.py: line=106 IGNORE (for REQ=slight and deep=20) module=pprint /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/gui.py: line=19 IGNORE (for REQ=slight and deep=8) module=pymol /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/gui.py: line=26 IGNORE (for REQ=slight and deep=8) module=pymol python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/headering.py: skipping sys python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/headering.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/headering.py: line=9 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/headering.py: line=265 IGNORE (for REQ=slight and deep=11) module=shlex /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/helping.py: line=20 IGNORE (for REQ=slight and deep=8) module=pymol /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/helping.py: line=21 IGNORE (for REQ=slight and deep=8) module=pymol /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/helping.py: line=23 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/helping.py: line=306 IGNORE (for REQ=slight and deep=12) module=sys /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/importing.py: line=19 IGNORE (for REQ=slight and deep=8) module=re /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/importing.py: line=20 IGNORE (for REQ=slight and deep=8) module=os /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/importing.py: line=21 IGNORE (for REQ=slight and deep=8) module=sys /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/importing.py: line=22 IGNORE (for REQ=slight and deep=8) module=copy /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/importing.py: line=23 IGNORE (for REQ=slight and deep=8) module=traceback /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/importing.py: line=24 IGNORE (for REQ=slight and deep=8) module=pymol /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/importing.py: line=26 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/importing.py: line=27 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/importing.py: line=28 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/importing.py: line=32 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/importing.py: line=39 IGNORE (for REQ=slight and deep=12) module=pymol /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/importing.py: line=44 IGNORE (for REQ=slight and deep=8) module=chempy /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/importing.py: line=137 IGNORE (for REQ=slight and deep=16) module=zlib /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/importing.py: line=514 IGNORE (for REQ=slight and deep=16) module=urllib /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/importing.py: line=516 IGNORE (for REQ=slight and deep=16) module=urllib /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/importing.py: line=519 IGNORE (for REQ=slight and deep=16) module=web /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/importing.py: line=587 IGNORE (for REQ=slight and deep=24) module=webbrowser /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/importing.py: line=619 IGNORE (for REQ=slight and deep=20) module=epymol /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/importing.py: line=621 IGNORE (for REQ=slight and deep=20) module=epymol /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/importing.py: line=623 IGNORE (for REQ=slight and deep=20) module=epymol /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/importing.py: line=786 IGNORE (for REQ=slight and deep=16) module=inspect /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/importing.py: line=1272 IGNORE (for REQ=slight and deep=12) module=string /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/importing.py: line=1515 IGNORE (for REQ=slight and deep=12) module=glob /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/importing.py: line=1534 IGNORE (for REQ=slight and deep=16) module=lxml /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/importing.py: line=1536 IGNORE (for REQ=slight and deep=16) module=xml /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/importing.py: line=1546 IGNORE (for REQ=slight and deep=12) module=chempy /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/importing.py: line=1547 IGNORE (for REQ=slight and deep=12) module=collections /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/importing.py: line=1675 IGNORE (for REQ=slight and deep=12) module=chempy /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/importing.py: line=1743 IGNORE (for REQ=slight and deep=12) module=chempy /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/importing.py: line=1796 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/importing.py: line=1803 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/importing.py: line=1811 IGNORE (for REQ=slight and deep=8) module=pymol python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/internal.py: skipping sys python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/internal.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/internal.py: line=12 IGNORE (for REQ=slight and deep=8) module=thread /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/internal.py: line=13 IGNORE (for REQ=slight and deep=8) module=urllib2 /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/internal.py: line=15 IGNORE (for REQ=slight and deep=8) module=_thread /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/internal.py: line=16 IGNORE (for REQ=slight and deep=8) module=urllib python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/internal.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/internal.py: line=24 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/internal.py: line=330 IGNORE (for REQ=slight and deep=12) module=io /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/internal.py: line=330 IGNORE (for REQ=slight and deep=12) module=gzip /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/internal.py: line=335 IGNORE (for REQ=slight and deep=12) module=bz2 /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/invocation.py: line=116 IGNORE (for REQ=slight and deep=8) module=copy /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/invocation.py: line=117 IGNORE (for REQ=slight and deep=8) module=re /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/invocation.py: line=118 IGNORE (for REQ=slight and deep=8) module=os /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/invocation.py: line=119 IGNORE (for REQ=slight and deep=8) module=glob /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/invocation.py: line=120 IGNORE (for REQ=slight and deep=8) module=sys /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/invocation.py: line=121 IGNORE (for REQ=slight and deep=8) module=traceback /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/invocation.py: line=200 IGNORE (for REQ=slight and deep=24) module=_winreg /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/invocation.py: line=202 IGNORE (for REQ=slight and deep=24) module=winreg /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/invocation.py: line=263 IGNORE (for REQ=slight and deep=28) module=pymol /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/keyboard.py: line=1 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/keyboard.py: line=3 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/keyboard.py: line=143 IGNORE (for REQ=slight and deep=8) module=re /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/keywords.py: line=2 possible relative import from ., UNIMPLEMENTED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/locking.py: skipping sys /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/locking.py: line=4 IGNORE (for REQ=slight and deep=8) module=thread /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/locking.py: line=6 IGNORE (for REQ=slight and deep=8) module=_thread python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/locking.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/locking.py: line=12 possible relative import from ., UNIMPLEMENTED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/locking.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/m4x.py: line=26 possible relative import from ., UNIMPLEMENTED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/m4x.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/m4x.py: line=64 IGNORE (for REQ=slight and deep=8) module=os /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/menu.py: line=631 IGNORE (for REQ=slight and deep=8) module=pymol /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/menu.py: line=1278 IGNORE (for REQ=slight and deep=8) module=pymol /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/menu.py: line=1404 IGNORE (for REQ=slight and deep=8) module=pymol python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/monitoring.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/monitoring.py: skipping sys python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/morphing.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/movie.py: line=555 IGNORE (for REQ=slight and deep=8) module=time /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/movie.py: line=555 IGNORE (for REQ=slight and deep=8) module=os /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/movie.py: line=583 IGNORE (for REQ=slight and deep=8) module=os /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/movie.py: line=607 IGNORE (for REQ=slight and deep=16) module=freemol /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/movie.py: line=668 IGNORE (for REQ=slight and deep=12) module=freemol /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/moving.py: line=17 IGNORE (for REQ=slight and deep=8) module=sys /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/moving.py: line=19 IGNORE (for REQ=slight and deep=12) module=thread /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/moving.py: line=21 IGNORE (for REQ=slight and deep=12) module=_thread /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/moving.py: line=23 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/moving.py: line=24 IGNORE (for REQ=slight and deep=8) module=pymol /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/moving.py: line=25 IGNORE (for REQ=slight and deep=8) module=re /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/moving.py: line=27 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/parser.py: line=25 IGNORE (for REQ=slight and deep=8) module=pymol /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/parser.py: line=26 IGNORE (for REQ=slight and deep=8) module=traceback /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/parser.py: line=27 IGNORE (for REQ=slight and deep=8) module=re /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/parser.py: line=28 IGNORE (for REQ=slight and deep=8) module=glob /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/parser.py: line=29 IGNORE (for REQ=slight and deep=8) module=sys /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/parser.py: line=30 IGNORE (for REQ=slight and deep=8) module=os /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/parser.py: line=31 IGNORE (for REQ=slight and deep=8) module=__main__ /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/parser.py: line=33 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/parser.py: line=34 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/parser.py: line=465 IGNORE (for REQ=slight and deep=15) module=sys /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/parser.py: line=484 IGNORE (for REQ=slight and deep=23) module=time /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/parsing.py: line=68 IGNORE (for REQ=slight and deep=8) module=re /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/parsing.py: line=69 IGNORE (for REQ=slight and deep=8) module=sys /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/parsing.py: line=70 IGNORE (for REQ=slight and deep=8) module=threading /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/parsing.py: line=71 IGNORE (for REQ=slight and deep=8) module=types /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/parsing.py: line=72 IGNORE (for REQ=slight and deep=8) module=traceback /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/parsing.py: line=73 IGNORE (for REQ=slight and deep=8) module=inspect /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/parsing.py: line=473 IGNORE (for REQ=slight and deep=12) module=__main__ /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/parsing.py: line=474 IGNORE (for REQ=slight and deep=12) module=pymol /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/parsing.py: line=477 IGNORE (for REQ=slight and deep=16) module=pymol /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/parsing.py: line=526 IGNORE (for REQ=slight and deep=12) module=pymol /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/parsing.py: line=619 IGNORE (for REQ=slight and deep=8) module=pymol python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/__init__.py: skipping sys python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/__init__.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/__init__.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/__init__.py: line=15 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/__init__.py: line=60 IGNORE (for REQ=slight and deep=8) module=pprint /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/__init__.py: line=229 IGNORE (for REQ=slight and deep=11) module=time /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/__init__.py: line=263 IGNORE (for REQ=slight and deep=19) module=traceback /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/__init__.py: line=284 IGNORE (for REQ=slight and deep=11) module=types /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/__init__.py: line=302 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/__init__.py: line=317 IGNORE (for REQ=slight and deep=19) module=shutil /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/__init__.py: line=342 IGNORE (for REQ=slight and deep=8) module=time /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/__init__.py: line=388 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/__init__.py: line=394 IGNORE (for REQ=slight and deep=12) module=pymol /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/installation.py: line=60 IGNORE (for REQ=slight and deep=12) module=distutils /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/installation.py: line=74 IGNORE (for REQ=slight and deep=8) module=re /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/installation.py: line=97 IGNORE (for REQ=slight and deep=12) module=zipfile /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/installation.py: line=100 IGNORE (for REQ=slight and deep=12) module=tarfile /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/installation.py: line=138 IGNORE (for REQ=slight and deep=8) module=tempfile /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/installation.py: line=148 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/installation.py: line=160 IGNORE (for REQ=slight and deep=8) module=Pmw /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/installation.py: line=183 IGNORE (for REQ=slight and deep=8) module=shutil /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/installation.py: line=184 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/installation.py: line=185 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/installation.py: line=186 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/installation.py: line=246 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/installation.py: line=317 IGNORE (for REQ=slight and deep=16) module=traceback /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/installation.py: line=341 possible relative import from ., UNIMPLEMENTED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/legacysupport.py: skipping sys python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/legacysupport.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/legacysupport.py: line=58 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/legacysupport.py: line=72 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/legacysupport.py: line=84 IGNORE (for REQ=slight and deep=8) module=pymol /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/legacysupport.py: line=85 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/legacysupport.py: line=94 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/legacysupport.py: line=117 IGNORE (for REQ=slight and deep=16) module=Tkinter /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/legacysupport.py: line=119 IGNORE (for REQ=slight and deep=16) module=tkinter /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/legacysupport.py: line=124 IGNORE (for REQ=slight and deep=8) module=threading /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/legacysupport.py: line=129 IGNORE (for REQ=slight and deep=8) module=time /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/legacysupport.py: line=143 IGNORE (for REQ=slight and deep=15) module=tkMessageBox /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/legacysupport.py: line=145 IGNORE (for REQ=slight and deep=15) module=tkinter /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/legacysupport.py: line=146 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/legacysupport.py: line=160 IGNORE (for REQ=slight and deep=15) module=tkFileDialog /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/legacysupport.py: line=162 IGNORE (for REQ=slight and deep=15) module=tkinter python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui.py: skipping sys /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui.py: line=12 IGNORE (for REQ=slight and deep=8) module=Tkinter /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui.py: line=13 IGNORE (for REQ=slight and deep=8) module=tkSimpleDialog /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui.py: line=15 IGNORE (for REQ=slight and deep=8) module=tkinter /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui.py: line=16 IGNORE (for REQ=slight and deep=8) module=tkinter /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui.py: line=17 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui.py: line=18 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui.py: line=46 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui.py: line=118 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui.py: line=166 IGNORE (for REQ=slight and deep=11) module=pymol /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui.py: line=173 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui.py: line=194 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui.py: line=195 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui.py: line=199 IGNORE (for REQ=slight and deep=15) module=tempfile /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui.py: line=199 IGNORE (for REQ=slight and deep=15) module=shutil /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui.py: line=245 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui.py: line=261 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui.py: line=262 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui.py: line=266 IGNORE (for REQ=slight and deep=15) module=tempfile /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui.py: line=266 IGNORE (for REQ=slight and deep=15) module=shutil /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui.py: line=266 IGNORE (for REQ=slight and deep=15) module=os /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui.py: line=290 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui.py: line=297 IGNORE (for REQ=slight and deep=15) module=tempfile /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui.py: line=297 IGNORE (for REQ=slight and deep=15) module=shutil /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui.py: line=297 IGNORE (for REQ=slight and deep=15) module=os /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui.py: line=366 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui.py: line=378 IGNORE (for REQ=slight and deep=15) module=os /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui.py: line=379 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui.py: line=431 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui.py: line=473 possible relative import from ., UNIMPLEMENTED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/repository.py: skipping sys /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/repository.py: line=15 IGNORE (for REQ=slight and deep=8) module=urllib /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/repository.py: line=16 IGNORE (for REQ=slight and deep=8) module=urllib /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/repository.py: line=17 IGNORE (for REQ=slight and deep=8) module=urllib /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/repository.py: line=19 IGNORE (for REQ=slight and deep=8) module=urllib2 /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/repository.py: line=20 IGNORE (for REQ=slight and deep=8) module=urlparse /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/repository.py: line=21 IGNORE (for REQ=slight and deep=8) module=urllib2 /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/repository.py: line=23 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/repository.py: line=33 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/repository.py: line=73 IGNORE (for REQ=slight and deep=11) module=os /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/repository.py: line=94 IGNORE (for REQ=slight and deep=11) module=re /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/repository.py: line=103 IGNORE (for REQ=slight and deep=11) module=re /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/repository.py: line=141 IGNORE (for REQ=slight and deep=11) module=re /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/repository.py: line=158 IGNORE (for REQ=slight and deep=11) module=re /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/repository.py: line=193 IGNORE (for REQ=slight and deep=11) module=json /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/repository.py: line=203 IGNORE (for REQ=slight and deep=11) module=os /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/repository.py: line=215 IGNORE (for REQ=slight and deep=11) module=shutil /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/repository.py: line=221 IGNORE (for REQ=slight and deep=11) module=os /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/repository.py: line=252 IGNORE (for REQ=slight and deep=8) module=re /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/repository.py: line=252 IGNORE (for REQ=slight and deep=8) module=os /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/repository.py: line=253 IGNORE (for REQ=slight and deep=8) module=pymol /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/repository.py: line=352 IGNORE (for REQ=slight and deep=12) module=socket_hack /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/povray.py: line=17 IGNORE (for REQ=slight and deep=8) module=os /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/povray.py: line=18 IGNORE (for REQ=slight and deep=8) module=traceback /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/preset.py: line=16 possible relative import from ., UNIMPLEMENTED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/data/chempy/sidechains/generate1.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/data/chempy/sidechains/generate1.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/data/chempy/sidechains/generate1.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/data/chempy/tinker/make_simple.py: skipping sys python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/data/demo/cgo03.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/data/demo/cgo03.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/cookbook/build_peptide.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/cookbook/build_peptide.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/cookbook/dali.py: line=9 IGNORE (for REQ=slight and deep=8) module=urllib /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/cookbook/dali.py: line=10 IGNORE (for REQ=slight and deep=8) module=gzip /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/cookbook/dali.py: line=11 IGNORE (for REQ=slight and deep=8) module=os /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/cookbook/dali.py: line=12 IGNORE (for REQ=slight and deep=8) module=string python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/cookbook/dali.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/cookbook/symsph.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/cgo01.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/cgo01.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/cgo02.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/cgo02.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/cgo03.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/cgo03.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/cgo04.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/cgo05.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/cgo05.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/cgo06.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/cgo06.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/cgo07.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/cgo07.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/cgo08.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/cgo08.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/cgo_3Dtext01.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/cgo_3Dtext01.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/cgo_3Dtext01.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/cgo_axes.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/cgo_axes.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/cgo_label_hack.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/cgo_label_hack.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/cgo_plane.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/cgo_plane.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/chempy_model01.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/chempy_model02.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/chempy_model03.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/click_ordered_list.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/click_ordered_list.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/click_ordered_list.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/extend_demo01.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/gl01.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/gl01.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/gl02.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/gl02.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/gl03.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/gl03.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/importing.py: hiding __main__, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/importing.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/link_demo.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/link_demo.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/link_demo.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/link_demo.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/membrane.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/mutate02.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/particle01.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/particle01.py: line=49 IGNORE (for REQ=slight and deep=8) module=traceback python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/particle02.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/particle02.py: line=61 IGNORE (for REQ=slight and deep=8) module=traceback python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/pick_wiz.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/pick_wiz.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/pick_wiz.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/povray01.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/sele_wiz.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/sele_wiz.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/sele_wiz.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/start_pymol.py: hiding __main__, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/start_pymol.py: skipping __builtin__ python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/start_pymol.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/syncmol.py: skipping sys /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/syncmol.py: line=179 IGNORE (for REQ=slight and deep=8) module=os /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/syncmol.py: line=180 IGNORE (for REQ=slight and deep=8) module=pymol python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/tkwindow.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/webgui01.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/webgui01.py: line=180 IGNORE (for REQ=slight and deep=8) module=webbrowser python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/webgui02.py: skipping sys python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/webgui02.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/webgui02.py: line=314 IGNORE (for REQ=slight and deep=8) module=webbrowser python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/xmlrpc01.py: skipping sys /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/xmlrpc02.py: line=96 IGNORE (for REQ=slight and deep=8) module=sys python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/launching/launch.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/launching/launch_demo.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/launching/launch_demo.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/launching/launch_no_tk.py: hiding __main__, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/launching/launch_no_tk.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/launching/launch_viewer1.py: hiding __main__, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/launching/launch_viewer1.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/launching/launch_viewer2.py: hiding __main__, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/launching/launch_viewer2.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/querying.py: line=19 IGNORE (for REQ=slight and deep=8) module=time /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/querying.py: line=20 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/querying.py: line=21 IGNORE (for REQ=slight and deep=8) module=pymol /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/querying.py: line=23 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/querying.py: line=630 IGNORE (for REQ=slight and deep=20) module=re /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/querying.py: line=1670 IGNORE (for REQ=slight and deep=12) module=chempy python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/rpc.py: skipping sys /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/rpc.py: line=21 IGNORE (for REQ=slight and deep=8) module=SimpleXMLRPCServer /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/rpc.py: line=23 IGNORE (for REQ=slight and deep=8) module=xmlrpc python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/rpc.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/rpc.py: line=256 IGNORE (for REQ=slight and deep=8) module=pymol /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/rpc.py: line=280 IGNORE (for REQ=slight and deep=8) module=pymol /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/rpc.py: line=428 IGNORE (for REQ=slight and deep=12) module=os /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/rpc.py: line=445 IGNORE (for REQ=slight and deep=12) module=pymol /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/selecting.py: line=17 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/selecting.py: line=21 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/selecting.py: line=25 IGNORE (for REQ=slight and deep=8) module=pymol /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/setting.py: line=19 IGNORE (for REQ=slight and deep=8) module=traceback /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/setting.py: line=20 IGNORE (for REQ=slight and deep=8) module=string /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/setting.py: line=21 IGNORE (for REQ=slight and deep=8) module=types /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/setting.py: line=22 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/setting.py: line=23 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/setting.py: line=25 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/setting.py: line=29 IGNORE (for REQ=slight and deep=8) module=re /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/shortcut.py: line=18 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/shortcut.py: line=19 possible relative import from ., UNIMPLEMENTED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/util.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/util.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/util.py: line=137 IGNORE (for REQ=slight and deep=8) module=collections /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/util.py: line=222 IGNORE (for REQ=slight and deep=12) module=pymol /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/util.py: line=339 IGNORE (for REQ=slight and deep=8) module=chempy python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/util.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/util.py: line=816 IGNORE (for REQ=slight and deep=8) module=pymol /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/util.py: line=1569 IGNORE (for REQ=slight and deep=8) module=itertools /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/util.py: line=1628 IGNORE (for REQ=slight and deep=8) module=collections /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/viewing.py: line=19 IGNORE (for REQ=slight and deep=8) module=sys /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/viewing.py: line=21 IGNORE (for REQ=slight and deep=12) module=thread /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/viewing.py: line=23 IGNORE (for REQ=slight and deep=12) module=_thread /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/viewing.py: line=25 IGNORE (for REQ=slight and deep=8) module=threading /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/viewing.py: line=26 IGNORE (for REQ=slight and deep=8) module=types /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/viewing.py: line=27 IGNORE (for REQ=slight and deep=8) module=traceback /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/viewing.py: line=28 IGNORE (for REQ=slight and deep=8) module=pymol /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/viewing.py: line=29 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/viewing.py: line=30 IGNORE (for REQ=slight and deep=8) module=copy /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/viewing.py: line=31 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/viewing.py: line=32 IGNORE (for REQ=slight and deep=8) module=re /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/viewing.py: line=35 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/viewing.py: line=1087 IGNORE (for REQ=slight and deep=12) module=os /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/viewing.py: line=2214 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/viewing.py: line=2443 possible relative import from ., UNIMPLEMENTED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/__init__.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/annotation.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/annotation.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/annotation.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/appearance.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/appearance.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/appearance.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/benchmark.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/benchmark.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/benchmark.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/box.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/box.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/box.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/box.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/charge.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/charge.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/charge.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/cleanup.py: skipping sys python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/cleanup.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/cleanup.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/cleanup.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/command.py: line=4 IGNORE (for REQ=slight and deep=8) module=itertools /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/command.py: line=6 IGNORE (for REQ=slight and deep=8) module=itertools python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/command.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/command.py: line=19 IGNORE (for REQ=slight and deep=11) module=inspect python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/demo.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/demo.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/demo.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/demo.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/demo.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/density.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/density.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/density.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/distance.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/distance.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/distance.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/dragging.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/dragging.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/dragging.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/fedora.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/fedora.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/fedora.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/filter.py: skipping sys python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/filter.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/filter.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/label.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/label.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/label.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/measurement.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/measurement.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/measurement.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/message.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/message.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/message.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/mutagenesis.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/mutagenesis.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/mutagenesis.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/pair_fit.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/pair_fit.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/pair_fit.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/pseudoatom.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/pseudoatom.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/pseudoatom.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/renaming.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/renaming.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/renaming.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/sculpting.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/sculpting.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/sculpting.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/sculpting.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/security.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/security.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/security.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/stereodemo.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/stereodemo.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/stereodemo.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/stereodemo.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/stereodemo.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/stereodemo.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/stereodemo.py: line=99 IGNORE (for REQ=slight and deep=11) module=chempy python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/toggle.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/toggle.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/toggle.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizarding.py: line=19 IGNORE (for REQ=slight and deep=8) module=pymol /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizarding.py: line=20 IGNORE (for REQ=slight and deep=8) module=sys /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizarding.py: line=22 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizarding.py: line=27 IGNORE (for REQ=slight and deep=12) module=cPickle /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizarding.py: line=29 IGNORE (for REQ=slight and deep=12) module=pickle /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizarding.py: line=30 IGNORE (for REQ=slight and deep=8) module=traceback /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizarding.py: line=37 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizarding.py: line=53 IGNORE (for REQ=slight and deep=28) module=pymol /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizarding.py: line=190 IGNORE (for REQ=slight and deep=20) module=chempy /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/xray.py: line=23 IGNORE (for REQ=slight and deep=8) module=re /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/xray.py: line=46 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/xray.py: line=83 IGNORE (for REQ=slight and deep=8) module=re /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/xwin.py: line=7 IGNORE (for REQ=slight and deep=8) module=popen2 python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol2/__init__.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol2/__init__.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol2/__init__.py: skipping sys /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol2/__init__.py: line=80 possible relative import from ., UNIMPLEMENTED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol2/cmd2.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol2/cmd2.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol2/cmd2.py: line=63 IGNORE (for REQ=slight and deep=11) module=pymol /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol2/cmd2.py: line=91 IGNORE (for REQ=slight and deep=11) module=pymol /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/web/pymolhttpd.py: line=20 IGNORE (for REQ=slight and deep=8) module=simplejson /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/web/pymolhttpd.py: line=22 IGNORE (for REQ=slight and deep=8) module=json python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/web/pymolhttpd.py: skipping sys /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/web/pymolhttpd.py: line=433 IGNORE (for REQ=slight and deep=19) module=pymol /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/web/pymolhttpd.py: line=487 IGNORE (for REQ=slight and deep=19) module=urllib Provides: python2.7-module-pymol = 1.8.6.0-alt1, python2.7(pymol), python2.7(pmg_wx), python2.7(pymol.__main__), python2.7(pymol._cmd), python2.7(pymol.api), python2.7(pymol.callback), python2.7(pymol.cgo), python2.7(pymol.checking), python2.7(pymol.cmd), python2.7(pymol.colorramping), python2.7(pymol.commanding), python2.7(pymol.completing), python2.7(pymol.computing), python2.7(pymol.constants), python2.7(pymol.constants_palette), python2.7(pymol.contrib), python2.7(pymol.controlling), python2.7(pymol.creating), python2.7(pymol.editing), python2.7(pymol.editor), python2.7(pymol.embed), python2.7(pymol.embed.epymol), python2.7(pymol.embed.wxpymol), python2.7(pymol.experimenting), python2.7(pymol.exporting), python2.7(pymol.externing), python2.7(pymol.feedingback), python2.7(pymol.fitting), python2.7(pymol.gui), python2.7(pymol.headering), python2.7(pymol.helping), python2.7(pymol.importing), python2.7(pymol.internal), python2.7(pymol.invocation), python2.7(pymol.keyboard), python2.7(pymol.keywords), python2.7(pymol.locking), python2.7(pymol.m4x), python2.7(pymol.menu), python2.7(pymol.monitoring), python2.7(pymol.morphing), python2.7(pymol.movie), python2.7(pymol.moving), python2.7(pymol.opengl), python2.7(pymol.opengl.gl), python2.7(pymol.opengl.glu), python2.7(pymol.opengl.glut), python2.7(pymol.parser), python2.7(pymol.parsing), python2.7(pymol.plugins), python2.7(pymol.plugins.installation), python2.7(pymol.plugins.legacysupport), python2.7(pymol.plugins.managergui), python2.7(pymol.plugins.repository), python2.7(pymol.povray), python2.7(pymol.preset), python2.7(pymol.querying), python2.7(pymol.rpc), python2.7(pymol.selecting), python2.7(pymol.selector), python2.7(pymol.setting), python2.7(pymol.shortcut), python2.7(pymol.util), python2.7(pymol.vfont), python2.7(pymol.viewing), python2.7(pymol.wizard), python2.7(pymol.wizard.annotation), python2.7(pymol.wizard.appearance), python2.7(pymol.wizard.benchmark), python2.7(pymol.wizard.box), python2.7(pymol.wizard.charge), python2.7(pymol.wizard.cleanup), python2.7(pymol.wizard.command), python2.7(pymol.wizard.demo), python2.7(pymol.wizard.density), python2.7(pymol.wizard.distance), python2.7(pymol.wizard.dragging), python2.7(pymol.wizard.fedora), python2.7(pymol.wizard.filter), python2.7(pymol.wizard.label), python2.7(pymol.wizard.measurement), python2.7(pymol.wizard.message), python2.7(pymol.wizard.mutagenesis), python2.7(pymol.wizard.pair_fit), python2.7(pymol.wizard.pseudoatom), python2.7(pymol.wizard.renaming), python2.7(pymol.wizard.sculpting), python2.7(pymol.wizard.security), python2.7(pymol.wizard.stereodemo), python2.7(pymol.wizard.toggle), python2.7(pymol.wizarding), python2.7(pymol.xray), python2.7(pymol.xwin), python2.7(pymol2), python2.7(pymol2.cmd2), python2.7(web.pymolhttpd) Requires: python = 2.7, python-module-webpy, /usr/lib/python2.7/site-packages, libGL.so.1 >= set:piqUKwt1hejU3Pj9TL2Ntr99dgFaGXjCDD6F4kqnnrkd1lHTrA83yIxZJCqSkU792icn9jWpKjPw7OayrqFmFQiAY8ZqZuxi5Dlhgu3FVqbqGPuGigFJlUDfIE3Zbs22EUa8pICP4aJoW60wbcDeAAnF3w8sHJvHB5QQjKqZu6RoggbVDhdCw2QVeBgEylTv5OukrXxSCIPMzRPsCx4Rt7EjwIHVucM51j4rdQDP7mK9I6vw8bqriK5BdZqrgSjsXbQMoAlh, libGLEW.so.2.1 >= set:pjTPEI7u86tTfeffYoNS68ktMZkgsWKSFLPKgHEYdmv8QivwpMavv3ySNzz8mUWgkBPlP84nysBZiMK72yaTaPNBNl9mZ9XowbVEYigOfoBnPL7RE1tOiySHAW0tkGvQiZA9b8yI70nR7ZLo3dMPVHZFoTGqZuL90CPeftOUwWU4, libGLU.so.1 >= set:jhZbTkQ1, libc.so.6(GLIBC_2.0), libc.so.6(GLIBC_2.1), libc.so.6(GLIBC_2.1.3), libc.so.6(GLIBC_2.2), libc.so.6(GLIBC_2.3), libc.so.6(GLIBC_2.3.4), libc.so.6(GLIBC_2.4), libc.so.6(GLIBC_2.7), libfreetype.so.6 >= set:lhcEBwdAEvqYfVSRnZ8QGCkI4X2, libgcc_s.so.1(GCC_3.0), libgcc_s.so.1(GLIBC_2.0), libglut.so.3 >= set:lgGXH75jtYkAEQ05oRUwXEZrHGAoFJhs0cjRj12iUQbHzcsKQ22RFfhzcBxyk2bruym, libm.so.6(GLIBC_2.0), libm.so.6(GLIBC_2.15), libpng16.so.16 >= set:lgHMZqVB6LYmqGEnT4ZwZmEpuhias5giC1mHUudqYPqPorxfN0qmbIINhZIClPrm8fk, libpng16.so.16(PNG16_0), libpthread.so.0(GLIBC_2.0), libpthread.so.0(GLIBC_2.2), libpython2.7.so.1.0 >= set:oh5ga2oNfnavj1YOLqMVSh9GJKsernhAOFjT8K7iOlDGtBiTSQTnI0dqTlUVugOJ2k77U8GR4LabGRpnugzeD6iCpzTTfUZaxSug1TdFNAl7LYMS4qihZwCXDP7msc9hM4N9er6kAqjFI3a7x0wOxb56XwLgxJweDKdy6KK8glqwG4fZcJs1nQrHvjGjSgRIliqmdc0Iie8tas624MiQHJJ0Z8QL5BfHyo75ncyGOzcAwf, libstdc++.so.6(CXXABI_1.3), libstdc++.so.6(CXXABI_1.3.8), libstdc++.so.6(GLIBCXX_3.4), libstdc++.so.6(GLIBCXX_3.4.11), libstdc++.so.6(GLIBCXX_3.4.18), libstdc++.so.6(GLIBCXX_3.4.20), libstdc++.so.6(GLIBCXX_3.4.21), libstdc++.so.6(GLIBCXX_3.4.9), libxml2.so.2 >= set:ojVRp4WgntgoMbEZsBQJ5vsWrxQ6YbrAQaABPAgc5w8aoJwSM84, libxml2.so.2(LIBXML2_2.4.30), libxml2.so.2(LIBXML2_2.6.0), libxml2.so.2(LIBXML2_2.6.3), python-modules, python2.7(OpenGL), python2.7(Pmw), python2.7(Tkinter), python2.7(chempy), python2.7(inspect), python2.7(numpy), python2.7(pmg_tk), python2.7(tkFileDialog), python2.7(wxPython), rtld(GNU_HASH) Requires(rpmlib): rpmlib(SetVersions) Obsoletes: libpymol Finding debuginfo files (using /usr/lib/rpm/find-debuginfo-files) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.b0Kd4y Creating python-module-pymol-debuginfo package Processing files: python-module-chempy-1.8.6.0-alt1 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.6zYEnB find-provides: running scripts (alternatives,debuginfo,gir,lib,pam,perl,pkgconfig,python,python3,shell,tcl,typelib) Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.aYg7VG find-requires: running scripts (cpp,debuginfo,files,gir-js,gir-python,gir,lib,pam,perl,pkgconfig,pkgconfiglib,python,python3,rpmlib,shebang,shell,static,symlinks,tcl,typelib) lib.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/champ/_champ.so: underlinked libraries: /lib/libm.so.6 /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/__init__.py: line=144 IGNORE (for REQ=slight and deep=19) module=urllib /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/__init__.py: line=146 IGNORE (for REQ=slight and deep=19) module=urllib /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/__init__.py: line=149 IGNORE (for REQ=slight and deep=15) module=gzip python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/arc.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/arc.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/bmin/__init__.py: skipping sys python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/bmin/__init__.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/bmin/commands.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/bmin/realtime.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/bmin/realtime.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/bmin/realtime.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/bmin/realtime.py: line=18 IGNORE (for REQ=slight and deep=8) module=molobj /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/bmin/realtime.py: line=19 IGNORE (for REQ=slight and deep=8) module=typer /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/bmin/realtime.py: line=20 IGNORE (for REQ=slight and deep=8) module=rules python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/bmin/state.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/bmin/state.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/bmin/util.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/bmin/util.py: line=12 IGNORE (for REQ=slight and deep=8) module=pymol python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/cc1.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/cc1.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/cex.py: line=382 IGNORE (for REQ=slight and deep=12) module=StringIO /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/cex.py: line=384 IGNORE (for REQ=slight and deep=12) module=io /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/champ/__init__.py: line=18 possible relative import from ., UNIMPLEMENTED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/champ/assign.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/champ/assign.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/champ/assign.py: line=64 IGNORE (for REQ=slight and deep=12) module=chempy /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/champ/assign.py: line=168 IGNORE (for REQ=slight and deep=12) module=chempy python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/cif.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/cif.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/cif.py: line=681 IGNORE (for REQ=slight and deep=19) module=pymol python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/dictdb.py: skipping sys /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/dictdb.py: line=22 IGNORE (for REQ=slight and deep=8) module=cPickle /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/dictdb.py: line=23 IGNORE (for REQ=slight and deep=8) module=SocketServer /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/dictdb.py: line=25 IGNORE (for REQ=slight and deep=8) module=pickle /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/dictdb.py: line=26 IGNORE (for REQ=slight and deep=8) module=socketserver /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/dictdb.py: line=651 IGNORE (for REQ=slight and deep=8) module=os /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/dictdb.py: line=768 IGNORE (for REQ=slight and deep=8) module=random python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/fast/__init__.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/fast/__init__.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/fragments/__init__.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/fragments/__init__.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/gamess1.py: skipping sys python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/gamess1.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/gamess1.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/gamess1.py: line=366 IGNORE (for REQ=slight and deep=11) module=pymol /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/gamess1.py: line=367 possible relative import from ., UNIMPLEMENTED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/gms.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/gms.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/hetatm.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/hetatm.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/hetatm.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/hetatm.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/io.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/io.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/io.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/io.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/io.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/io.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/io.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/io.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/io.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/io.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/io.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/lst.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/mae.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/mae.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/mmd.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/mmd.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/mmtf/__init__.py: line=10 IGNORE (for REQ=slight and deep=8) module=itertools /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/mmtf/__init__.py: line=36 IGNORE (for REQ=slight and deep=8) module=itertools /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/mmtf/__init__.py: line=37 IGNORE (for REQ=slight and deep=8) module=chempy /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/mmtf/__init__.py: line=152 possible relative import from ., UNIMPLEMENTED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/mmtf/io.py: skipping sys /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/mmtf/io.py: line=16 IGNORE (for REQ=slight and deep=8) module=msgpack /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/mmtf/io.py: line=18 IGNORE (for REQ=slight and deep=8) module=umsgpack /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/mmtf/io.py: line=21 IGNORE (for REQ=slight and deep=8) module=urllib /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/mmtf/io.py: line=27 IGNORE (for REQ=slight and deep=8) module=urllib /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/mmtf/io.py: line=230 IGNORE (for REQ=slight and deep=15) module=io /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/mmtf/io.py: line=230 IGNORE (for REQ=slight and deep=15) module=gzip python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/models.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/models.py: line=19 possible relative import from ., UNIMPLEMENTED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/mol.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/mol.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/mol.py: line=19 IGNORE (for REQ=slight and deep=8) module=pymol python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/mol2.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/pdb.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/pdb.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/pkl.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/pkl.py: line=18 IGNORE (for REQ=slight and deep=8) module=cPickle /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/pkl.py: line=20 IGNORE (for REQ=slight and deep=8) module=pickle /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/place.py: line=20 possible relative import from ., UNIMPLEMENTED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/place.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/place.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/place.py: line=324 IGNORE (for REQ=slight and deep=8) module=random /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/place.py: line=325 IGNORE (for REQ=slight and deep=8) module=pymol /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/place.py: line=326 IGNORE (for REQ=slight and deep=8) module=chempy /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/protein.py: line=21 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/protein.py: line=22 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/protein.py: line=23 possible relative import from ., UNIMPLEMENTED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/protein.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/protein.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/protein.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/protein.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/sdf.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/sdf.py: line=148 IGNORE (for REQ=slight and deep=19) module=urllib /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/sdf.py: line=150 IGNORE (for REQ=slight and deep=19) module=urllib python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/solvate.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/solvate.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/solvate.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/tinker/__init__.py: skipping sys python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/tinker/__init__.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/tinker/amber.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/tinker/keyword.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/tinker/realtime.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/tinker/realtime.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/tinker/realtime.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/tinker/realtime.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/tinker/realtime.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/tinker/realtime.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/tinker/realtime.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/tinker/realtime.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/tinker/realtime.py: line=37 IGNORE (for REQ=slight and deep=8) module=molobj /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/tinker/realtime.py: line=38 IGNORE (for REQ=slight and deep=8) module=typer /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/tinker/realtime.py: line=39 IGNORE (for REQ=slight and deep=8) module=rules python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/tinker/state.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/tinker/state.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/xyz.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/xyz.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED Provides: python2.7-module-pymol = 1.8.6.0-alt1, python2.7(chempy), python2.7(chempy.arc), python2.7(chempy.bmin), python2.7(chempy.bmin.commands), python2.7(chempy.bmin.realtime), python2.7(chempy.bmin.state), python2.7(chempy.bmin.util), python2.7(chempy.bond_amber), python2.7(chempy.bond_mmff), python2.7(chempy.bonds), python2.7(chempy.brick), python2.7(chempy.cc1), python2.7(chempy.cex), python2.7(chempy.champ), python2.7(chempy.champ._champ), python2.7(chempy.champ.amber99), python2.7(chempy.champ.assign), python2.7(chempy.champ.formal_charges), python2.7(chempy.charge), python2.7(chempy.cif), python2.7(chempy.cpv), python2.7(chempy.dictdb), python2.7(chempy.fast), python2.7(chempy.fragments), python2.7(chempy.gamess1), python2.7(chempy.gms), python2.7(chempy.hetatm), python2.7(chempy.io), python2.7(chempy.lst), python2.7(chempy.mae), python2.7(chempy.map), python2.7(chempy.mass), python2.7(chempy.mmd), python2.7(chempy.mmtf), python2.7(chempy.mmtf.io), python2.7(chempy.models), python2.7(chempy.mol), python2.7(chempy.mol2), python2.7(chempy.neighbor), python2.7(chempy.pdb), python2.7(chempy.pkl), python2.7(chempy.place), python2.7(chempy.protein), python2.7(chempy.protein_amber), python2.7(chempy.protein_amber99), python2.7(chempy.protein_mmff), python2.7(chempy.protein_residues), python2.7(chempy.sdf), python2.7(chempy.solvate), python2.7(chempy.tinker), python2.7(chempy.tinker.amber), python2.7(chempy.tinker.keyword), python2.7(chempy.tinker.realtime), python2.7(chempy.tinker.state), python2.7(chempy.water_amber), python2.7(chempy.water_residues), python2.7(chempy.xyz) Requires: python-module-pymol = 1.8.6.0-alt1, python = 2.7, python2.7(pymol), /usr/lib/python2.7/site-packages, libc.so.6(GLIBC_2.0), libc.so.6(GLIBC_2.1.3), libc.so.6(GLIBC_2.3.4), libc.so.6(GLIBC_2.4), libpython2.7.so.1.0 >= set:ojlg5MxXZmrCxdSJ2MXxRMy3vnwlHD0Mvp7OOgKEyONgtV2thL4p8wW1ZBsZ7AeTy2alh, python-modules, python2.7(Numeric), python2.7(Precision), python2.7(numpy), rtld(GNU_HASH) Requires(rpmlib): rpmlib(SetVersions) Finding debuginfo files (using /usr/lib/rpm/find-debuginfo-files) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.tj6pMz Creating python-module-chempy-debuginfo package Processing files: python-module-pmg_tk-1.8.6.0-alt1 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.QDJ0Qb find-provides: running scripts (alternatives,debuginfo,gir,lib,pam,perl,pkgconfig,python,python3,shell,tcl,typelib) Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.maoo9l find-requires: running scripts (cpp,debuginfo,files,gir-js,gir-python,gir,lib,pam,perl,pkgconfig,pkgconfiglib,python,python3,rpmlib,shebang,shell,static,symlinks,tcl,typelib) python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/ColorEditor.py: skipping sys /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/ColorEditor.py: line=23 IGNORE (for REQ=slight and deep=8) module=Tkinter /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/ColorEditor.py: line=24 IGNORE (for REQ=slight and deep=8) module=tkColorChooser /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/ColorEditor.py: line=26 IGNORE (for REQ=slight and deep=8) module=tkinter /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/ColorEditor.py: line=27 IGNORE (for REQ=slight and deep=8) module=tkinter python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/PMGApp.py: skipping sys /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/PMGApp.py: line=25 IGNORE (for REQ=slight and deep=8) module=Queue /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/PMGApp.py: line=26 IGNORE (for REQ=slight and deep=8) module=Tkinter /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/PMGApp.py: line=27 IGNORE (for REQ=slight and deep=8) module=tkFileDialog /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/PMGApp.py: line=28 IGNORE (for REQ=slight and deep=8) module=tkMessageBox /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/PMGApp.py: line=30 IGNORE (for REQ=slight and deep=8) module=queue /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/PMGApp.py: line=31 IGNORE (for REQ=slight and deep=8) module=tkinter /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/PMGApp.py: line=32 IGNORE (for REQ=slight and deep=8) module=tkinter /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/PMGApp.py: line=33 IGNORE (for REQ=slight and deep=8) module=tkinter /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/PMGApp.py: line=38 IGNORE (for REQ=slight and deep=12) module=pymol /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/PMGApp.py: line=219 IGNORE (for REQ=slight and deep=15) module=time /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/PMGApp.py: line=256 IGNORE (for REQ=slight and deep=11) module=pymol /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/PMGApp.py: line=360 IGNORE (for REQ=slight and deep=15) module=platform /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/PyMOLMapLoad.py: line=353 IGNORE (for REQ=slight and deep=12) module=Tkinter /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/PyMOLMapLoad.py: line=355 IGNORE (for REQ=slight and deep=12) module=tkinter python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/SetEditor.py: skipping sys /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/SetEditor.py: line=19 IGNORE (for REQ=slight and deep=8) module=Tkinter /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/SetEditor.py: line=21 IGNORE (for REQ=slight and deep=8) module=tkinter python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/Setting.py: skipping sys /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/Setting.py: line=22 IGNORE (for REQ=slight and deep=8) module=Tkinter /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/Setting.py: line=23 IGNORE (for REQ=slight and deep=8) module=Tkinter /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/Setting.py: line=25 IGNORE (for REQ=slight and deep=8) module=tkinter /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/Setting.py: line=26 IGNORE (for REQ=slight and deep=8) module=tkinter python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/TextEditor.py: skipping sys /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/TextEditor.py: line=9 IGNORE (for REQ=slight and deep=8) module=Tkinter /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/TextEditor.py: line=10 IGNORE (for REQ=slight and deep=8) module=tkFileDialog /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/TextEditor.py: line=11 IGNORE (for REQ=slight and deep=8) module=tkMessageBox /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/TextEditor.py: line=12 IGNORE (for REQ=slight and deep=8) module=tkSimpleDialog /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/TextEditor.py: line=14 IGNORE (for REQ=slight and deep=8) module=tkinter /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/TextEditor.py: line=15 IGNORE (for REQ=slight and deep=8) module=tkinter /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/TextEditor.py: line=16 IGNORE (for REQ=slight and deep=8) module=tkinter /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/TextEditor.py: line=17 IGNORE (for REQ=slight and deep=8) module=tkinter /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/TextEditor.py: line=98 IGNORE (for REQ=slight and deep=8) module=Pmw /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/__init__.py: line=22 possible relative import from ., UNIMPLEMENTED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/__init__.py: skipping sys /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins/demo/__init__.py: line=8 IGNORE (for REQ=slight and deep=8) module=Tkinter /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins/demo/__init__.py: line=9 IGNORE (for REQ=slight and deep=8) module=tkFileDialog /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins/demo/__init__.py: line=11 IGNORE (for REQ=slight and deep=8) module=tkinter /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins/demo/__init__.py: line=12 IGNORE (for REQ=slight and deep=8) module=tkinter python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins/demo/__init__.py: hiding pmg_tk, which SEEMS TO BE SELF-SATISFIED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins/normal/ModalWindow.py: line=3 IGNORE (for REQ=slight and deep=8) module=Tkinter /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins/normal/ModalWindow.py: line=5 IGNORE (for REQ=slight and deep=8) module=tkinter python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins/normal/__init__.py: skipping sys /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins/normal/__init__.py: line=11 IGNORE (for REQ=slight and deep=8) module=Tkinter /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins/normal/__init__.py: line=12 IGNORE (for REQ=slight and deep=8) module=tkFileDialog /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins/normal/__init__.py: line=13 IGNORE (for REQ=slight and deep=8) module=tkMessageBox /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins/normal/__init__.py: line=14 IGNORE (for REQ=slight and deep=8) module=tkFont /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins/normal/__init__.py: line=16 IGNORE (for REQ=slight and deep=8) module=tkinter /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins/normal/__init__.py: line=17 IGNORE (for REQ=slight and deep=8) module=tkinter /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins/normal/__init__.py: line=18 IGNORE (for REQ=slight and deep=8) module=tkinter /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins/normal/__init__.py: line=19 IGNORE (for REQ=slight and deep=8) module=tkinter python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins/normal/__init__.py: hiding pmg_tk, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins/normal/__init__.py: hiding pmg_tk, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins/normal/__init__.py: hiding pmg_tk, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins/normal/__init__.py: hiding pmg_tk, which SEEMS TO BE SELF-SATISFIED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins/normal/__init__.py: line=30 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins/normal/__init__.py: line=942 IGNORE (for REQ=slight and deep=11) module=pmg_tk /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins/normal/__init__.py: line=1003 IGNORE (for REQ=slight and deep=15) module=freemol /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins/normal/__init__.py: line=1120 IGNORE (for REQ=slight and deep=15) module=webbrowser python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins/normal/builder.py: skipping sys /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins/normal/builder.py: line=11 IGNORE (for REQ=slight and deep=8) module=Tkinter /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins/normal/builder.py: line=12 IGNORE (for REQ=slight and deep=8) module=tkMessageBox /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins/normal/builder.py: line=14 IGNORE (for REQ=slight and deep=8) module=tkinter /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins/normal/builder.py: line=15 IGNORE (for REQ=slight and deep=8) module=tkinter /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/startup/apbs_tools.py: line=151 IGNORE (for REQ=slight and deep=8) module=Tkinter /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/startup/apbs_tools.py: line=152 IGNORE (for REQ=slight and deep=8) module=Tkinter /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/startup/apbs_tools.py: line=154 IGNORE (for REQ=slight and deep=8) module=tkinter /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/startup/apbs_tools.py: line=155 IGNORE (for REQ=slight and deep=8) module=tkinter /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/startup/apbs_tools.py: line=336 IGNORE (for REQ=slight and deep=8) module=subprocess /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/startup/apbs_tools.py: line=336 IGNORE (for REQ=slight and deep=8) module=tempfile /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/startup/apbs_tools.py: line=884 IGNORE (for REQ=slight and deep=15) module=freemol /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/startup/apbs_tools.py: line=1112 IGNORE (for REQ=slight and deep=15) module=webbrowser /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/startup/apbs_tools.py: line=1115 IGNORE (for REQ=slight and deep=15) module=webbrowser /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/startup/apbs_tools.py: line=1200 IGNORE (for REQ=slight and deep=15) module=imp /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/startup/apbs_tools.py: line=1677 IGNORE (for REQ=slight and deep=11) module=shlex /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/startup/apbs_tools.py: line=1681 IGNORE (for REQ=slight and deep=19) module=imp /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/startup/apbs_tools.py: line=1689 IGNORE (for REQ=slight and deep=23) module=pdb2pqr /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/startup/apbs_tools.py: line=1691 IGNORE (for REQ=slight and deep=15) module=pdb2pqr /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/startup/apbs_tools.py: line=1694 IGNORE (for REQ=slight and deep=15) module=pdb2pqr /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/startup/apbs_tools.py: line=1787 IGNORE (for REQ=slight and deep=11) module=chempy /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/startup/remote_pdb_load.py: line=8 IGNORE (for REQ=slight and deep=8) module=Tkinter /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/startup/remote_pdb_load.py: line=9 IGNORE (for REQ=slight and deep=8) module=Tkinter /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/startup/remote_pdb_load.py: line=10 IGNORE (for REQ=slight and deep=8) module=tkMessageBox /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/startup/remote_pdb_load.py: line=12 IGNORE (for REQ=slight and deep=8) module=tkinter /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/startup/remote_pdb_load.py: line=13 IGNORE (for REQ=slight and deep=8) module=tkinter /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/startup/remote_pdb_load.py: line=14 IGNORE (for REQ=slight and deep=8) module=tkinter /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/volume.py: line=11 IGNORE (for REQ=slight and deep=8) module=Tkinter /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/volume.py: line=13 IGNORE (for REQ=slight and deep=8) module=tkinter /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/volume.py: line=16 IGNORE (for REQ=slight and deep=8) module=pymol /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/volume.py: line=406 IGNORE (for REQ=slight and deep=11) module=random /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/volume.py: line=1018 IGNORE (for REQ=slight and deep=8) module=Pmw shebang.req.files: executable script /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/startup/apbs_tools.py is not executable Provides: python2.7-module-pymol = 1.8.6.0-alt1, python2.7(pmg_tk), python2.7(pmg_tk.ColorEditor), python2.7(pmg_tk.Demo), python2.7(pmg_tk.PMGApp), python2.7(pmg_tk.PyMOLMapLoad), python2.7(pmg_tk.SetEditor), python2.7(pmg_tk.Setting), python2.7(pmg_tk.TextEditor), python2.7(pmg_tk.skins), python2.7(pmg_tk.skins.demo), python2.7(pmg_tk.skins.normal), python2.7(pmg_tk.skins.normal.ModalWindow), python2.7(pmg_tk.skins.normal.builder), python2.7(pmg_tk.startup), python2.7(pmg_tk.startup.apbs_tools), python2.7(pmg_tk.startup.remote_pdb_load), python2.7(pmg_tk.volume) Requires: python-module-pymol = 1.8.6.0-alt1, python = 2.7, python2.7(pymol), /usr/lib/python2.7/site-packages, python-modules, python2.7(Pmw), python2.7(chempy), python2.7(distutils) Finding debuginfo files (using /usr/lib/rpm/find-debuginfo-files) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.VGfW3U Processing files: pymol-doc-1.8.6.0-alt1 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.r9c2rZ find-provides: running scripts (alternatives,debuginfo,gir,lib,pam,perl,pkgconfig,python,python3,shell,tcl,typelib) Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.Lc04Qr find-requires: running scripts (cpp,debuginfo,files,gir-js,gir-python,gir,lib,pam,perl,pkgconfig,pkgconfiglib,python,python3,rpmlib,shebang,shell,static,symlinks,tcl,typelib) Processing files: python-module-pymol-debuginfo-1.8.6.0-alt1 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.7dbpOs find-provides: running scripts (debuginfo) Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.SpF7a5 find-requires: running scripts (debuginfo) Requires: python-module-pymol = 1.8.6.0-alt1, debug(libGL.so.1), debug(libGLEW.so.2.1), debug(libGLU.so.1), debug(libc.so.6), debug(libfreetype.so.6), debug(libgcc_s.so.1), debug(libglut.so.3), debug(libm.so.6), debug(libpng16.so.16), debug(libpthread.so.0), debug(libpython2.7.so.1.0), debug(libstdc++.so.6), debug(libxml2.so.2) Processing files: python-module-chempy-debuginfo-1.8.6.0-alt1 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.VVgI1c find-provides: running scripts (debuginfo) Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.BNOCb5 find-requires: running scripts (debuginfo) Requires: python-module-chempy = 1.8.6.0-alt1, debug(libc.so.6), debug(libpython2.7.so.1.0) Adding to pymol-devel a strict dependency on python-module-chempy Adding to python-module-pymol a strict dependency on python-module-chempy Adding to python-module-pymol a strict dependency on python-module-pmg_tk Removing 1 extra deps from pymol-devel due to dependency on python-module-pymol Removing 1 extra deps from pymol-devel due to dependency on python-module-chempy Removing 1 extra deps from python-module-pymol due to dependency on python-module-chempy Removing 1 extra deps from python-module-chempy due to dependency on python-module-pymol Removing 1 extra deps from python-module-pymol due to dependency on python-module-pmg_tk Removing 1 extra deps from python-module-pmg_tk due to dependency on python-module-pymol Removing 1 extra deps from python-module-pmg_tk due to dependency on python-module-chempy Removing 2 extra deps from pymol-devel due to repentancy on python-module-pymol Removing 9 extra deps from python-module-pymol due to repentancy on python-module-chempy Removing 1 extra deps from python-module-pymol due to repentancy on python-module-pmg_tk Removing 2 extra deps from python-module-chempy due to repentancy on python-module-pmg_tk warning: Installed (but unpackaged) file(s) found: /usr/lib/python2.7/site-packages/web/__init__.py /usr/lib/python2.7/site-packages/web/__init__.pyc /usr/lib/python2.7/site-packages/web/__init__.pyo /usr/lib/python2.7/site-packages/web/examples/__init__.py /usr/lib/python2.7/site-packages/web/examples/__init__.pyc /usr/lib/python2.7/site-packages/web/examples/__init__.pyo /usr/lib/python2.7/site-packages/web/examples/justhttpd.py /usr/lib/python2.7/site-packages/web/examples/justhttpd.pyc /usr/lib/python2.7/site-packages/web/examples/justhttpd.pyo Wrote: /usr/src/RPM/RPMS/i586/pymol-1.8.6.0-alt1.i586.rpm Wrote: /usr/src/RPM/RPMS/i586/pymol-devel-1.8.6.0-alt1.i586.rpm Wrote: /usr/src/RPM/RPMS/i586/python-module-pymol-1.8.6.0-alt1.i586.rpm Wrote: /usr/src/RPM/RPMS/i586/python-module-chempy-1.8.6.0-alt1.i586.rpm Wrote: /usr/src/RPM/RPMS/i586/python-module-pmg_tk-1.8.6.0-alt1.i586.rpm Wrote: /usr/src/RPM/RPMS/noarch/pymol-doc-1.8.6.0-alt1.noarch.rpm Wrote: /usr/src/RPM/RPMS/i586/python-module-pymol-debuginfo-1.8.6.0-alt1.i586.rpm Wrote: /usr/src/RPM/RPMS/i586/python-module-chempy-debuginfo-1.8.6.0-alt1.i586.rpm 329.91user 15.55system 11:02.09elapsed 52%CPU (0avgtext+0avgdata 379800maxresident)k 0inputs+0outputs (0major+6176324minor)pagefaults 0swaps 355.00user 20.44system 11:52.70elapsed 52%CPU (0avgtext+0avgdata 379800maxresident)k 4344inputs+0outputs (0major+6885865minor)pagefaults 0swaps --- python-module-pymol-1.8.6.0-alt1.i586.rpm.repo 2018-03-13 15:48:19.000000000 +0000 +++ python-module-pymol-1.8.6.0-alt1.i586.rpm.hasher 2018-11-09 10:39:18.368503606 +0000 @@ -718,3 +718,3 @@ Requires: python-module-webpy -Requires: libGL.so.1 >= set:ohKMwXx7Ibejem9E2DR54Mj9XnxUKlii3k25RR9PpJ9qXnJIauk9EQKeIhRLCzHCTEPEQ632urBvrChdCwiGG0p3L3gjdrSkxs25Hub019CO5dT3FDNedVYKIZ0TCYpUN3qzUCCh46HFJMlmyATqAegD0pbw5T3Za3Pf5aeikLyH2ZHIVqrthD7bXFBwGJlhFhoVioJ31PyeWnZkoynQ4nxANeD9CZ29VearIly2sxIBi01LZ5g3zxIa2 +Requires: libGL.so.1 >= set:piqUKwt1hejU3Pj9TL2Ntr99dgFaGXjCDD6F4kqnnrkd1lHTrA83yIxZJCqSkU792icn9jWpKjPw7OayrqFmFQiAY8ZqZuxi5Dlhgu3FVqbqGPuGigFJlUDfIE3Zbs22EUa8pICP4aJoW60wbcDeAAnF3w8sHJvHB5QQjKqZu6RoggbVDhdCw2QVeBgEylTv5OukrXxSCIPMzRPsCx4Rt7EjwIHVucM51j4rdQDP7mK9I6vw8bqriK5BdZqrgSjsXbQMoAlh Requires: libGLEW.so.2.1 >= set:pjTPEI7u86tTfeffYoNS68ktMZkgsWKSFLPKgHEYdmv8QivwpMavv3ySNzz8mUWgkBPlP84nysBZiMK72yaTaPNBNl9mZ9XowbVEYigOfoBnPL7RE1tOiySHAW0tkGvQiZA9b8yI70nR7ZLo3dMPVHZFoTGqZuL90CPeftOUwWU4 @@ -728,3 +728,3 @@ Requires: libgcc_s.so.1(GLIBC_2.0) -Requires: libglut.so.3 >= set:kfkTL75jtuaikqKPZk12isWBRh6eXRgzznUxWAqWLrliB8Ogxk2DT6NRRR4d +Requires: libglut.so.3 >= set:lgGXH75jtYkAEQ05oRUwXEZrHGAoFJhs0cjRj12iUQbHzcsKQ22RFfhzcBxyk2bruym Requires: libm.so.6(GLIBC_2.0)